AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1215790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215790 MtrunA17_Chr4g0065081 96.694 242 8 0 2 243 4 245 1.32e-174 479
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215790 AT2G47910.1 64.435 239 75 3 10 238 7 245 2.88e-110 317
Msa1215790 AT2G47910.2 73.333 180 45 1 62 238 18 197 9.78e-99 286

Find 91 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATAGTCCTACAATTTC+AGG 0.123360 8_1:-77202398 None:intergenic
GAAACTGTATTAACCGTTTC+TGG 0.145020 8_1:+77200532 Msa1215790:five_prime_UTR
TTCACTCATGAATATAAATT+TGG 0.163140 8_1:+77202962 Msa1215790:three_prime_UTR
TATGCTAAGGATTTCTTTAT+TGG 0.192732 8_1:+77202869 Msa1215790:three_prime_UTR
CATACATTGGATCATATATT+AGG 0.194530 8_1:-77202723 None:intergenic
ACAATTTCAGGAATCAATTT+AGG 0.211821 8_1:-77202386 None:intergenic
CATTCCCAAACCTGAATTAA+AGG 0.229005 8_1:+77202274 Msa1215790:CDS
CCACGTTGATGACGAGAAAT+TGG 0.265812 8_1:-77200674 None:intergenic
GTTGCAGATGAATATGAAAA+TGG 0.279549 8_1:+77202169 Msa1215790:intron
ATGGCAAGAATGCTTGGTTT+TGG 0.299846 8_1:+77202305 Msa1215790:CDS
CTATATTCCAAAACGATCTA+TGG 0.300602 8_1:-77202578 None:intergenic
GAAGCAATGGTCTGAATCTA+AGG 0.301805 8_1:-77200592 None:intergenic
TGAATTAAAGGCAAATAATA+TGG 0.311105 8_1:+77202286 Msa1215790:CDS
AGAGGGGAAGTGGTTTGTTT+TGG 0.313531 8_1:-77200632 None:intergenic
ATATTATTTGCCTTTAATTC+AGG 0.322155 8_1:-77202284 None:intergenic
TTTGCCTTTAATTCAGGTTT+GGG 0.337376 8_1:-77202278 None:intergenic
ACTCTCCGATCTATCATAGA+AGG 0.340744 8_1:+77202663 Msa1215790:three_prime_UTR
ATTTGCCTTTAATTCAGGTT+TGG 0.341208 8_1:-77202279 None:intergenic
AAAGTGTAGAAACAAATTAA+TGG 0.343866 8_1:+77200562 Msa1215790:exon
TTGCGATCCATAGATCGTTT+TGG 0.361984 8_1:+77202571 Msa1215790:three_prime_UTR
GAATTTCTTGAGCGCTCAAT+TGG 0.362235 8_1:+77201702 Msa1215790:CDS
TAATCAAATTTGTCCCTTGT+TGG 0.374285 8_1:+77202474 Msa1215790:three_prime_UTR
TGTCCCTTGTTGGTATTTGT+AGG 0.390696 8_1:+77202484 Msa1215790:three_prime_UTR
AGTATCCTGATATTAGACTA+TGG 0.405584 8_1:+77201778 Msa1215790:CDS
ACAAACCATAGTCTAATATC+AGG 0.408448 8_1:-77201783 None:intergenic
AGGGAAAAGCATGAAGTTAG+AGG 0.409056 8_1:-77200650 None:intergenic
ATACATTGGATCATATATTA+GGG 0.410650 8_1:-77202722 None:intergenic
TTTGAAATATCAATAATGTA+AGG 0.411573 8_1:-77202427 None:intergenic
ATGCCAGTTGCAGCTTGAAA+AGG 0.412295 8_1:-77201544 None:intergenic
GTCCCTTGTTGGTATTTGTA+GGG 0.415304 8_1:+77202485 Msa1215790:three_prime_UTR
GATACAACCCTACAACTTCA+AGG 0.417218 8_1:+77202623 Msa1215790:three_prime_UTR
AATGTATGTCGAAGTGTATC+AGG 0.419732 8_1:+77202738 Msa1215790:three_prime_UTR
GCTCTCCAATCCAATAAAAC+TGG 0.419972 8_1:-77201834 None:intergenic
AAATTGATTCCTGAAATTGT+AGG 0.420619 8_1:+77202389 Msa1215790:three_prime_UTR
TGCCAGTTGCAGCTTGAAAA+GGG 0.422401 8_1:-77201543 None:intergenic
ATGATTTGCGTACCAGATAA+GGG 0.429757 8_1:-77201574 None:intergenic
AATAATATGGCAAGAATGCT+TGG 0.429980 8_1:+77202299 Msa1215790:CDS
AATGATTTGCGTACCAGATA+AGG 0.441596 8_1:-77201575 None:intergenic
TGCTATGTTAGTTCCGCATC+AGG 0.443793 8_1:+77201878 Msa1215790:CDS
GAAGTTTCCTTGTGGGTTGA+AGG 0.453295 8_1:-77200717 None:intergenic
TGGAATATAGATAATATATG+AGG 0.454585 8_1:+77202591 Msa1215790:three_prime_UTR
GTCTCTTTATTTGATGATGA+TGG 0.456703 8_1:+77200743 Msa1215790:CDS
GCATGAAGTTAGAGGGGAAG+TGG 0.457683 8_1:-77200642 None:intergenic
GGAATTGAAAACAAATAAAG+AGG 0.467012 8_1:+77202983 Msa1215790:three_prime_UTR
TCGAATCGGCCTTCAGTTGG+AGG 0.473327 8_1:-77201478 None:intergenic
ATCTTGTCGTGTATAGTTGA+TGG 0.474003 8_1:-77201730 None:intergenic
TCCAATAAAACTGGCAACCA+TGG 0.487310 8_1:-77201825 None:intergenic
ACAAACAGTTCCAATGCCTC+TGG 0.491209 8_1:-77202206 None:intergenic
GACTTGATGCTGCTTATCCA+TGG 0.492069 8_1:+77201808 Msa1215790:CDS
ACAACTTCAAGGACAAAACT+TGG 0.492128 8_1:+77202634 Msa1215790:three_prime_UTR
CGGCCTTCAGTTGGAGGCAT+AGG 0.503641 8_1:-77201472 None:intergenic
TATTCGTGATAGATAACATA+AGG 0.506430 8_1:+77200479 Msa1215790:five_prime_UTR
GGTATTTACTCTAGATCAAG+TGG 0.510971 8_1:-77202365 None:intergenic
ATATTGAGTTGGCAATATCA+TGG 0.512468 8_1:+77202517 Msa1215790:three_prime_UTR
TATCAATTACAACTTCGAAT+CGG 0.519861 8_1:-77201492 None:intergenic
GGACTAGAATGATATTGAGT+TGG 0.523066 8_1:+77202506 Msa1215790:three_prime_UTR
AGACATCGAAGTTTCCTTGT+GGG 0.528434 8_1:-77200724 None:intergenic
ACTTCGAATCGGCCTTCAGT+TGG 0.531614 8_1:-77201481 None:intergenic
TTGAAATATCAATAATGTAA+GGG 0.532341 8_1:-77202426 None:intergenic
TTTGGCAAAGGAGATGAAAG+TGG 0.539719 8_1:-77200614 None:intergenic
GGGAAAAGCATGAAGTTAGA+GGG 0.542061 8_1:-77200649 None:intergenic
CCTTCAGTTGGAGGCATAGG+AGG 0.545720 8_1:-77201469 None:intergenic
TTGCAGATGAATATGAAAAT+GGG 0.546953 8_1:+77202170 Msa1215790:intron
GGAATATAGATAATATATGA+GGG 0.554599 8_1:+77202592 Msa1215790:three_prime_UTR
TGATACACTTCGACATACAT+TGG 0.558435 8_1:-77202736 None:intergenic
GGAGAGCTGGAGAGCTAGCT+CGG 0.572069 8_1:+77201850 Msa1215790:CDS
TTGATGAAAGTAATATGCTA+AGG 0.572482 8_1:+77202856 Msa1215790:three_prime_UTR
ATTTATTGTATTACCTGATG+CGG 0.574151 8_1:-77201891 None:intergenic
GGAAAAGCATGAAGTTAGAG+GGG 0.574365 8_1:-77200648 None:intergenic
GATACCCTTCTATGATAGAT+CGG 0.575721 8_1:-77202668 None:intergenic
AGGGTACTAATGTGTCAAGC+TGG 0.576485 8_1:-77202703 None:intergenic
GGAGATGAAAGTGGAAGCAA+TGG 0.582269 8_1:-77200605 None:intergenic
CTCTCCGATCTATCATAGAA+GGG 0.591302 8_1:+77202664 Msa1215790:three_prime_UTR
CCTCCTATGCCTCCAACTGA+AGG 0.594495 8_1:+77201469 Msa1215790:CDS
GTTGATGACGAGAAATTGGA+AGG 0.599353 8_1:-77200670 None:intergenic
GCCAGTTGCAGCTTGAAAAG+GGG 0.608468 8_1:-77201542 None:intergenic
GAGACATCGAAGTTTCCTTG+TGG 0.622426 8_1:-77200725 None:intergenic
CTTGAAAAGGGGTTAAGTCA+AGG 0.630683 8_1:-77201531 None:intergenic
GAGCGCTCAAGAAATTCTTG+TGG 0.636416 8_1:-77201696 None:intergenic
TGAGATTAGCAGAACACAAG+GGG 0.638632 8_1:+77202794 Msa1215790:three_prime_UTR
TTGATGACGAGAAATTGGAA+GGG 0.641000 8_1:-77200669 None:intergenic
AAGCAATGGTCTGAATCTAA+GGG 0.645376 8_1:-77200591 None:intergenic
GGATACTCTGATAATTCTCG+AGG 0.647549 8_1:-77201762 None:intergenic
TCTGTTGCCTTCAACCCACA+AGG 0.648907 8_1:+77200710 Msa1215790:CDS
ACATGAACATTGCATACAGT+AGG 0.650769 8_1:-77202901 None:intergenic
GTCCCTACAAATACCAACAA+GGG 0.653485 8_1:-77202487 None:intergenic
CCAATTTCTCGTCATCAACG+TGG 0.655284 8_1:+77200674 Msa1215790:CDS
AGTCCCTACAAATACCAACA+AGG 0.656259 8_1:-77202488 None:intergenic
ATGAGATTAGCAGAACACAA+GGG 0.665939 8_1:+77202793 Msa1215790:three_prime_UTR
AATGAGATTAGCAGAACACA+AGG 0.675247 8_1:+77202792 Msa1215790:three_prime_UTR
GAGATTAGCAGAACACAAGG+GGG 0.749727 8_1:+77202795 Msa1215790:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATGATAAATGATATAAAAA+AGG - chr8_1:77200791-77200810 None:intergenic 15.0%
!!! AAGTTTTTATTGTATATTCA+TGG + chr8_1:77202237-77202256 Msa1215790:CDS 15.0%
!! TTGAAATATCAATAATGTAA+GGG - chr8_1:77202429-77202448 None:intergenic 15.0%
!!! TTTGAAATATCAATAATGTA+AGG - chr8_1:77202430-77202449 None:intergenic 15.0%
!! AAAGTGTAGAAACAAATTAA+TGG + chr8_1:77200562-77200581 Msa1215790:exon 20.0%
!!! TTCAATTTTATTCCTGTATT+TGG + chr8_1:77200909-77200928 Msa1215790:intron 20.0%
!!! TTAGATAAAAGTGTTCAAAT+TGG - chr8_1:77200970-77200989 None:intergenic 20.0%
!! TTCATTAACCTATAAGTATT+CGG + chr8_1:77201039-77201058 Msa1215790:intron 20.0%
!!! AAAAGATTAGTTCATTATGT+GGG + chr8_1:77201163-77201182 Msa1215790:intron 20.0%
!!! TGTACTAACTTTTACAATAA+AGG - chr8_1:77201255-77201274 None:intergenic 20.0%
!!! TGTCTTAATTGCTTTAATTT+TGG + chr8_1:77201611-77201630 Msa1215790:intron 20.0%
!!! AGTACTATGGTTTTAAATTA+CGG + chr8_1:77201932-77201951 Msa1215790:intron 20.0%
!! ACTTTATATAGGAAAATAAG+AGG + chr8_1:77202107-77202126 Msa1215790:intron 20.0%
!! CTTTATATAGGAAAATAAGA+GGG + chr8_1:77202108-77202127 Msa1215790:intron 20.0%
!! ATATTATTTGCCTTTAATTC+AGG - chr8_1:77202287-77202306 None:intergenic 20.0%
!! TGAATTAAAGGCAAATAATA+TGG + chr8_1:77202286-77202305 Msa1215790:CDS 20.0%
!! TGGAATATAGATAATATATG+AGG + chr8_1:77202591-77202610 Msa1215790:three_prime_UTR 20.0%
!! GGAATATAGATAATATATGA+GGG + chr8_1:77202592-77202611 Msa1215790:three_prime_UTR 20.0%
!! ATACATTGGATCATATATTA+GGG - chr8_1:77202725-77202744 None:intergenic 20.0%
!! TTCACTCATGAATATAAATT+TGG + chr8_1:77202962-77202981 Msa1215790:three_prime_UTR 20.0%
! TATTCGTGATAGATAACATA+AGG + chr8_1:77200479-77200498 Msa1215790:five_prime_UTR 25.0%
!! TGAACACTTTTATCTAAATG+TGG + chr8_1:77200973-77200992 Msa1215790:intron 25.0%
! TAACAATTACGGATTTCATT+GGG - chr8_1:77201113-77201132 None:intergenic 25.0%
!! CAAAAGATTAGTTCATTATG+TGG + chr8_1:77201162-77201181 Msa1215790:intron 25.0%
! TATCAATTACAACTTCGAAT+CGG - chr8_1:77201495-77201514 None:intergenic 25.0%
! ATTTATTGTATTACCTGATG+CGG - chr8_1:77201894-77201913 None:intergenic 25.0%
!!! ATGGTTTTAAATTACGGTTA+TGG + chr8_1:77201938-77201957 Msa1215790:intron 25.0%
! TTAAATTACGGTTATGGTTA+TGG + chr8_1:77201944-77201963 Msa1215790:intron 25.0%
!!! ACCTCTAAAATCTTTGTATT+AGG + chr8_1:77202042-77202061 Msa1215790:intron 25.0%
!!! CCTCTAAAATCTTTGTATTA+GGG + chr8_1:77202043-77202062 Msa1215790:intron 25.0%
! AACTCAGTAGTACTTTATAT+AGG + chr8_1:77202096-77202115 Msa1215790:intron 25.0%
! TTGCAGATGAATATGAAAAT+GGG + chr8_1:77202170-77202189 Msa1215790:intron 25.0%
! ACAATTTCAGGAATCAATTT+AGG - chr8_1:77202389-77202408 None:intergenic 25.0%
!! AAATTGATTCCTGAAATTGT+AGG + chr8_1:77202389-77202408 Msa1215790:three_prime_UTR 25.0%
! CATACATTGGATCATATATT+AGG - chr8_1:77202726-77202745 None:intergenic 25.0%
! TTGATGAAAGTAATATGCTA+AGG + chr8_1:77202856-77202875 Msa1215790:three_prime_UTR 25.0%
! TATGCTAAGGATTTCTTTAT+TGG + chr8_1:77202869-77202888 Msa1215790:three_prime_UTR 25.0%
! GGAATTGAAAACAAATAAAG+AGG + chr8_1:77202983-77203002 Msa1215790:three_prime_UTR 25.0%
!! GTCTCTTTATTTGATGATGA+TGG + chr8_1:77200743-77200762 Msa1215790:CDS 30.0%
TACTATAGTGTTCGATATGT+TGG + chr8_1:77200874-77200893 Msa1215790:intron 30.0%
ACAAACATTCATCCAAATAC+AGG - chr8_1:77200924-77200943 None:intergenic 30.0%
TGTTTGTCAAACATACCTTA+TGG + chr8_1:77200937-77200956 Msa1215790:intron 30.0%
CAAATTGGTATTAAGCCATA+AGG - chr8_1:77200955-77200974 None:intergenic 30.0%
ATTAACCTATAAGTATTCGG+TGG + chr8_1:77201042-77201061 Msa1215790:intron 30.0%
AGTACTTTAATTCAGCCTAT+AGG + chr8_1:77201065-77201084 Msa1215790:intron 30.0%
CTAACAATTACGGATTTCAT+TGG - chr8_1:77201114-77201133 None:intergenic 30.0%
CAATGAAATCCGTAATTGTT+AGG + chr8_1:77201112-77201131 Msa1215790:intron 30.0%
AGACACAATCAATTTGACAA+TGG + chr8_1:77201377-77201396 Msa1215790:intron 30.0%
GTAATTCTCTCTGCATTTAA+TGG + chr8_1:77201399-77201418 Msa1215790:intron 30.0%
GAGCTTATTATACTAAACGA+TGG + chr8_1:77201421-77201440 Msa1215790:intron 30.0%
AGTATCCTGATATTAGACTA+TGG + chr8_1:77201778-77201797 Msa1215790:CDS 30.0%
ACAAACCATAGTCTAATATC+AGG - chr8_1:77201786-77201805 None:intergenic 30.0%
TTTGTGTATGAGTAGTACTA+TGG + chr8_1:77201919-77201938 Msa1215790:intron 30.0%
! CCCTAATACAAAGATTTTAG+AGG - chr8_1:77202046-77202065 None:intergenic 30.0%
GTTGCAGATGAATATGAAAA+TGG + chr8_1:77202169-77202188 Msa1215790:intron 30.0%
! TTTGCCTTTAATTCAGGTTT+GGG - chr8_1:77202281-77202300 None:intergenic 30.0%
! ATTTGCCTTTAATTCAGGTT+TGG - chr8_1:77202282-77202301 None:intergenic 30.0%
AATAATATGGCAAGAATGCT+TGG + chr8_1:77202299-77202318 Msa1215790:CDS 30.0%
! TTTGATAGTCCTACAATTTC+AGG - chr8_1:77202401-77202420 None:intergenic 30.0%
TAATCAAATTTGTCCCTTGT+TGG + chr8_1:77202474-77202493 Msa1215790:three_prime_UTR 30.0%
!! ATATTGAGTTGGCAATATCA+TGG + chr8_1:77202517-77202536 Msa1215790:three_prime_UTR 30.0%
CTATATTCCAAAACGATCTA+TGG - chr8_1:77202581-77202600 None:intergenic 30.0%
GAAACTGTATTAACCGTTTC+TGG + chr8_1:77200532-77200551 Msa1215790:five_prime_UTR 35.0%
AAGCAATGGTCTGAATCTAA+GGG - chr8_1:77200594-77200613 None:intergenic 35.0%
!! TTGATGACGAGAAATTGGAA+GGG - chr8_1:77200672-77200691 None:intergenic 35.0%
!!! CTAAATGTGGATTTTTAGCC+TGG + chr8_1:77200986-77201005 Msa1215790:intron 35.0%
AGCTTCAGTCCTAACAATTA+CGG - chr8_1:77201124-77201143 None:intergenic 35.0%
! AGGTTAGAATTAGTCTCACA+AGG - chr8_1:77201235-77201254 None:intergenic 35.0%
! TTGACTCGATGTGAAAAAAG+TGG - chr8_1:77201302-77201321 None:intergenic 35.0%
TTTCACTGCTGAGATAACTT+AGG - chr8_1:77201326-77201345 None:intergenic 35.0%
! ATGATTTGCGTACCAGATAA+GGG - chr8_1:77201577-77201596 None:intergenic 35.0%
! AATGATTTGCGTACCAGATA+AGG - chr8_1:77201578-77201597 None:intergenic 35.0%
AAATGAACTTAGATGCTTCC+TGG + chr8_1:77201651-77201670 Msa1215790:intron 35.0%
ACTGTAGTAATGATAACACC+AGG - chr8_1:77201672-77201691 None:intergenic 35.0%
ATCTTGTCGTGTATAGTTGA+TGG - chr8_1:77201733-77201752 None:intergenic 35.0%
!! TACTACTGAGTTCTGAATTG+TGG - chr8_1:77202088-77202107 None:intergenic 35.0%
!! TGTTTTTAATCCAGAGGCAT+TGG + chr8_1:77202196-77202215 Msa1215790:CDS 35.0%
CATTCCCAAACCTGAATTAA+AGG + chr8_1:77202274-77202293 Msa1215790:CDS 35.0%
!!! AGAATGCTTGGTTTTGGAAT+TGG + chr8_1:77202311-77202330 Msa1215790:CDS 35.0%
GGTATTTACTCTAGATCAAG+TGG - chr8_1:77202368-77202387 None:intergenic 35.0%
GGACTAGAATGATATTGAGT+TGG + chr8_1:77202506-77202525 Msa1215790:three_prime_UTR 35.0%
! GTTTTGTCCTTGAAGTTGTA+GGG - chr8_1:77202633-77202652 None:intergenic 35.0%
!! AGTTTTGTCCTTGAAGTTGT+AGG - chr8_1:77202634-77202653 None:intergenic 35.0%
ACAACTTCAAGGACAAAACT+TGG + chr8_1:77202634-77202653 Msa1215790:three_prime_UTR 35.0%
GATACCCTTCTATGATAGAT+CGG - chr8_1:77202671-77202690 None:intergenic 35.0%
TGATACACTTCGACATACAT+TGG - chr8_1:77202739-77202758 None:intergenic 35.0%
AATGTATGTCGAAGTGTATC+AGG + chr8_1:77202738-77202757 Msa1215790:three_prime_UTR 35.0%
AATGAGATTAGCAGAACACA+AGG + chr8_1:77202792-77202811 Msa1215790:three_prime_UTR 35.0%
ATGAGATTAGCAGAACACAA+GGG + chr8_1:77202793-77202812 Msa1215790:three_prime_UTR 35.0%
ACATGAACATTGCATACAGT+AGG - chr8_1:77202904-77202923 None:intergenic 35.0%
GAAGCAATGGTCTGAATCTA+AGG - chr8_1:77200595-77200614 None:intergenic 40.0%
TTTGGCAAAGGAGATGAAAG+TGG - chr8_1:77200617-77200636 None:intergenic 40.0%
!!! GAAGTGGTTTGTTTTGGCAA+AGG - chr8_1:77200629-77200648 None:intergenic 40.0%
! GGAAAAGCATGAAGTTAGAG+GGG - chr8_1:77200651-77200670 None:intergenic 40.0%
! GGGAAAAGCATGAAGTTAGA+GGG - chr8_1:77200652-77200671 None:intergenic 40.0%
! AGGGAAAAGCATGAAGTTAG+AGG - chr8_1:77200653-77200672 None:intergenic 40.0%
!! GTTGATGACGAGAAATTGGA+AGG - chr8_1:77200673-77200692 None:intergenic 40.0%
AGACATCGAAGTTTCCTTGT+GGG - chr8_1:77200727-77200746 None:intergenic 40.0%
! AGTGTTCGATATGTTGGTCT+TGG + chr8_1:77200880-77200899 Msa1215790:intron 40.0%
ATGAAGCCGCCAAAAGAAAA+GGG - chr8_1:77201024-77201043 None:intergenic 40.0%
AATGAAGCCGCCAAAAGAAA+AGG - chr8_1:77201025-77201044 None:intergenic 40.0%
GTACTCCACCGAATACTTAT+AGG - chr8_1:77201050-77201069 None:intergenic 40.0%
CCACAAAAATGGCTACCTAT+AGG - chr8_1:77201083-77201102 None:intergenic 40.0%
!!! CCTATAGGTAGCCATTTTTG+TGG + chr8_1:77201080-77201099 Msa1215790:intron 40.0%
TGGGAATTGTGCCACAAAAA+TGG - chr8_1:77201094-77201113 None:intergenic 40.0%
CTTGAAAAGGGGTTAAGTCA+AGG - chr8_1:77201534-77201553 None:intergenic 40.0%
GGCATGAAAAATCCCTTATC+TGG + chr8_1:77201562-77201581 Msa1215790:CDS 40.0%
GAATTTCTTGAGCGCTCAAT+TGG + chr8_1:77201702-77201721 Msa1215790:CDS 40.0%
GGATACTCTGATAATTCTCG+AGG - chr8_1:77201765-77201784 None:intergenic 40.0%
!! TCCATGGTTGCCAGTTTTAT+TGG + chr8_1:77201824-77201843 Msa1215790:CDS 40.0%
TCCAATAAAACTGGCAACCA+TGG - chr8_1:77201828-77201847 None:intergenic 40.0%
!!! GGTTGCCAGTTTTATTGGAT+TGG + chr8_1:77201829-77201848 Msa1215790:CDS 40.0%
GCTCTCCAATCCAATAAAAC+TGG - chr8_1:77201837-77201856 None:intergenic 40.0%
!! GTTTTATTGGATTGGAGAGC+TGG + chr8_1:77201837-77201856 Msa1215790:CDS 40.0%
CGTTATCACAATCGCAATTG+TGG - chr8_1:77202014-77202033 None:intergenic 40.0%
!!! GGGAGTTGTTTTTAATCCAG+AGG + chr8_1:77202190-77202209 Msa1215790:CDS 40.0%
! ATGGCAAGAATGCTTGGTTT+TGG + chr8_1:77202305-77202324 Msa1215790:CDS 40.0%
TGTCCCTTGTTGGTATTTGT+AGG + chr8_1:77202484-77202503 Msa1215790:three_prime_UTR 40.0%
GTCCCTTGTTGGTATTTGTA+GGG + chr8_1:77202485-77202504 Msa1215790:three_prime_UTR 40.0%
GTCCCTACAAATACCAACAA+GGG - chr8_1:77202490-77202509 None:intergenic 40.0%
AGTCCCTACAAATACCAACA+AGG - chr8_1:77202491-77202510 None:intergenic 40.0%
! TTGCGATCCATAGATCGTTT+TGG + chr8_1:77202571-77202590 Msa1215790:three_prime_UTR 40.0%
GATACAACCCTACAACTTCA+AGG + chr8_1:77202623-77202642 Msa1215790:three_prime_UTR 40.0%
ACTCTCCGATCTATCATAGA+AGG + chr8_1:77202663-77202682 Msa1215790:three_prime_UTR 40.0%
CTCTCCGATCTATCATAGAA+GGG + chr8_1:77202664-77202683 Msa1215790:three_prime_UTR 40.0%
TGAGATTAGCAGAACACAAG+GGG + chr8_1:77202794-77202813 Msa1215790:three_prime_UTR 40.0%
! CACTTTTCAGCTGCCAGAAA+CGG - chr8_1:77200548-77200567 None:intergenic 45.0%
GGAGATGAAAGTGGAAGCAA+TGG - chr8_1:77200608-77200627 None:intergenic 45.0%
!!! AGAGGGGAAGTGGTTTGTTT+TGG - chr8_1:77200635-77200654 None:intergenic 45.0%
!! CCACGTTGATGACGAGAAAT+TGG - chr8_1:77200677-77200696 None:intergenic 45.0%
CCAATTTCTCGTCATCAACG+TGG + chr8_1:77200674-77200693 Msa1215790:CDS 45.0%
! GAAGTTTCCTTGTGGGTTGA+AGG - chr8_1:77200720-77200739 None:intergenic 45.0%
GAGACATCGAAGTTTCCTTG+TGG - chr8_1:77200728-77200747 None:intergenic 45.0%
!!! GTGGATTTTTAGCCTGGACT+TGG + chr8_1:77200992-77201011 Msa1215790:intron 45.0%
!!! GATTTTTAGCCTGGACTTGG+TGG + chr8_1:77200995-77201014 Msa1215790:intron 45.0%
! TGGTGGTAGCCCTTTTCTTT+TGG + chr8_1:77201012-77201031 Msa1215790:intron 45.0%
! TGGTAGCCCTTTTCTTTTGG+CGG + chr8_1:77201015-77201034 Msa1215790:intron 45.0%
TGCCAGTTGCAGCTTGAAAA+GGG - chr8_1:77201546-77201565 None:intergenic 45.0%
ATGCCAGTTGCAGCTTGAAA+AGG - chr8_1:77201547-77201566 None:intergenic 45.0%
GAGCGCTCAAGAAATTCTTG+TGG - chr8_1:77201699-77201718 None:intergenic 45.0%
! GACTTGATGCTGCTTATCCA+TGG + chr8_1:77201808-77201827 Msa1215790:CDS 45.0%
TGCTATGTTAGTTCCGCATC+AGG + chr8_1:77201878-77201897 Msa1215790:CDS 45.0%
ACAAACAGTTCCAATGCCTC+TGG - chr8_1:77202209-77202228 None:intergenic 45.0%
! AGGGTACTAATGTGTCAAGC+TGG - chr8_1:77202706-77202725 None:intergenic 45.0%
GAGATTAGCAGAACACAAGG+GGG + chr8_1:77202795-77202814 Msa1215790:three_prime_UTR 45.0%
CACAAGGGGGTCATTAAGAA+CGG + chr8_1:77202808-77202827 Msa1215790:three_prime_UTR 45.0%
GCATGAAGTTAGAGGGGAAG+TGG - chr8_1:77200645-77200664 None:intergenic 50.0%
TCTGTTGCCTTCAACCCACA+AGG + chr8_1:77200710-77200729 Msa1215790:CDS 50.0%
ACTTCGAATCGGCCTTCAGT+TGG - chr8_1:77201484-77201503 None:intergenic 50.0%
!! ACCCCTTTTCAAGCTGCAAC+TGG + chr8_1:77201541-77201560 Msa1215790:CDS 50.0%
GCCAGTTGCAGCTTGAAAAG+GGG - chr8_1:77201545-77201564 None:intergenic 50.0%
GATAATTCTCGAGGATCGCG+AGG - chr8_1:77201756-77201775 None:intergenic 50.0%
AAGGGGGTCATTAAGAACGG+AGG + chr8_1:77202811-77202830 Msa1215790:three_prime_UTR 50.0%
AAAGGGCTACCACCAAGTCC+AGG - chr8_1:77201007-77201026 None:intergenic 55.0%
! CCTTCAGTTGGAGGCATAGG+AGG - chr8_1:77201472-77201491 None:intergenic 55.0%
CCTCCTATGCCTCCAACTGA+AGG + chr8_1:77201469-77201488 Msa1215790:CDS 55.0%
TCGAATCGGCCTTCAGTTGG+AGG - chr8_1:77201481-77201500 None:intergenic 55.0%
TAGGGCCGCAATTGCGATTG+CGG + chr8_1:77202061-77202080 Msa1215790:intron 55.0%
GTGGTCCGCAATCGCAATTG+CGG - chr8_1:77202069-77202088 None:intergenic 55.0%
! CGGCCTTCAGTTGGAGGCAT+AGG - chr8_1:77201475-77201494 None:intergenic 60.0%
GGAGAGCTGGAGAGCTAGCT+CGG + chr8_1:77201850-77201869 Msa1215790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 77200467 77203025 77200467 ID=Msa1215790;Name=Msa1215790
chr8_1 mRNA 77200467 77203025 77200467 ID=Msa1215790-mRNA-1;Parent=Msa1215790;Name=Msa1215790-mRNA-1;_AED=0.04;_eAED=0.04;_QI=114|1|1|1|1|1|4|643|243
chr8_1 exon 77200467 77200764 77200467 ID=Msa1215790-mRNA-1:exon:26611;Parent=Msa1215790-mRNA-1
chr8_1 exon 77201452 77201583 77201452 ID=Msa1215790-mRNA-1:exon:26612;Parent=Msa1215790-mRNA-1
chr8_1 exon 77201691 77201899 77201691 ID=Msa1215790-mRNA-1:exon:26613;Parent=Msa1215790-mRNA-1
chr8_1 exon 77202176 77203025 77202176 ID=Msa1215790-mRNA-1:exon:26614;Parent=Msa1215790-mRNA-1
chr8_1 five_prime_UTR 77200467 77200580 77200467 ID=Msa1215790-mRNA-1:five_prime_utr;Parent=Msa1215790-mRNA-1
chr8_1 CDS 77200581 77200764 77200581 ID=Msa1215790-mRNA-1:cds;Parent=Msa1215790-mRNA-1
chr8_1 CDS 77201452 77201583 77201452 ID=Msa1215790-mRNA-1:cds;Parent=Msa1215790-mRNA-1
chr8_1 CDS 77201691 77201899 77201691 ID=Msa1215790-mRNA-1:cds;Parent=Msa1215790-mRNA-1
chr8_1 CDS 77202176 77202382 77202176 ID=Msa1215790-mRNA-1:cds;Parent=Msa1215790-mRNA-1
chr8_1 three_prime_UTR 77202383 77203025 77202383 ID=Msa1215790-mRNA-1:three_prime_utr;Parent=Msa1215790-mRNA-1
Gene Sequence

>Msa1215790

ATGGCTACTACCCTTAGATTCAGACCATTGCTTCCACTTTCATCTCCTTTGCCAAAACAAACCACTTCCCCTCTAACTTCATGCTTTTCCCTTCCAATTTCTCGTCATCAACGTGGAAATGTTGCTGTCTCTGTTGCCTTCAACCCACAAGGAAACTTCGATGTCTCTTTATTTGATGATGATGATGAGTCTAAAGTTTCACCTCCTATGCCTCCAACTGAAGGCCGATTCGAAGTTGTAATTGATAATGATGCTATTAGTCGCCTTGACTTAACCCCTTTTCAAGCTGCAACTGGCATGAAAAATCCCTTATCTGTTGAACCACAAGAATTTCTTGAGCGCTCAATTGGATTTACCATCAACTATACACGACAAGATCCTCGCGATCCTCGAGAATTATCAGAGTATCCTGATATTAGACTATGGTTTGTTAGACTTGATGCTGCTTATCCATGGTTGCCAGTTTTATTGGATTGGAGAGCTGGAGAGCTAGCTCGGTATGCTGCTATGTTAGTTCCGCATCAGATGAATATGAAAATGGGAGTTGTTTTTAATCCAGAGGCATTGGAACTGTTTGTTATGAATAAAGTTTTTATTGTATATTCATGGTTGAAGCATCACAACATTCCCAAACCTGAATTAAAGGCAAATAATATGGCAAGAATGCTTGGTTTTGGAATTGGAAGTGAACTATACGACTTAGTTGAGAATCATCCACTTGATCTAGAGTAA

Protein sequence

>Msa1215790

MATTLRFRPLLPLSSPLPKQTTSPLTSCFSLPISRHQRGNVAVSVAFNPQGNFDVSLFDDDDESKVSPPMPPTEGRFEVVIDNDAISRLDLTPFQAATGMKNPLSVEPQEFLERSIGFTINYTRQDPRDPRELSEYPDIRLWFVRLDAAYPWLPVLLDWRAGELARYAAMLVPHQMNMKMGVVFNPEALELFVMNKVFIVYSWLKHHNIPKPELKANNMARMLGFGIGSELYDLVENHPLDLE*