AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1282670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282670 MtrunA17_Chr8g0354121 98.225 169 3 0 3 171 126 294 1.56e-120 345
Msa1282670 MtrunA17_Chr3g0081511 64.497 169 57 1 3 171 130 295 3.44e-75 230
Msa1282670 MtrunA17_Chr3g0081421 61.538 169 65 0 3 171 130 298 5.87e-74 227
Msa1282670 MtrunA17_Chr7g0255561 58.824 170 67 3 3 171 127 294 9.54e-68 211
Msa1282670 MtrunA17_Chr7g0255581 58.824 170 67 3 3 171 127 294 9.54e-68 211
Msa1282670 MtrunA17_Chr1g0160171 43.787 169 90 2 3 171 129 292 3.00e-45 152
Msa1282670 MtrunA17_Chr3g0114691 41.420 169 96 2 3 171 133 298 8.69e-43 146
Msa1282670 MtrunA17_Chr3g0114701 44.444 171 91 4 3 172 122 289 5.05e-42 144
Msa1282670 MtrunA17_Chr1g0182291 43.529 170 88 3 3 171 128 290 3.23e-41 142
Msa1282670 MtrunA17_Chr1g0160181 41.143 175 91 4 3 172 131 298 5.50e-41 142
Msa1282670 MtrunA17_Chr3g0114731 42.012 169 91 3 3 171 131 292 6.14e-40 139
Msa1282670 MtrunA17_Chr7g0263101 42.353 170 92 3 3 171 126 290 8.79e-38 133
Msa1282670 MtrunA17_Chr3g0114711 35.784 204 92 5 3 171 127 326 1.01e-37 133
Msa1282670 MtrunA17_Chr1g0171301 37.647 170 100 3 3 171 129 293 2.28e-31 115
Msa1282670 MtrunA17_Chr3g0129571 33.333 171 109 3 3 171 122 289 9.36e-31 114
Msa1282670 MtrunA17_Chr8g0334761 34.503 171 107 3 1 171 122 287 7.10e-30 112
Msa1282670 MtrunA17_Chr3g0129591 34.682 173 108 3 1 171 118 287 9.14e-30 111
Msa1282670 MtrunA17_Chr1g0186611 36.257 171 101 3 3 172 129 292 1.21e-29 111
Msa1282670 MtrunA17_Chr3g0129581 34.503 171 107 3 3 171 120 287 2.04e-29 110
Msa1282670 MtrunA17_Chr4g0050881 36.257 171 99 6 5 171 123 287 2.71e-29 110
Msa1282670 MtrunA17_Chr3g0129601 35.057 174 101 4 3 171 142 308 1.85e-28 108
Msa1282670 MtrunA17_Chr1g0186571 36.471 170 100 4 3 171 126 288 3.20e-28 107
Msa1282670 MtrunA17_Chr1g0186601 35.882 170 101 3 3 171 129 291 4.46e-28 107
Msa1282670 MtrunA17_Chr6g0463971 33.136 169 109 3 4 171 129 294 2.95e-27 105
Msa1282670 MtrunA17_Chr1g0186641 34.118 170 104 3 3 171 126 288 6.59e-27 103
Msa1282670 MtrunA17_Chr2g0284261 33.333 168 105 3 4 171 122 282 5.43e-26 101
Msa1282670 MtrunA17_Chr2g0278541 33.333 174 105 6 5 171 127 296 9.95e-26 101
Msa1282670 MtrunA17_Chr6g0483401 32.353 170 114 1 3 172 123 291 2.17e-25 100
Msa1282670 MtrunA17_Chr8g0383731 32.768 177 104 5 3 171 118 287 2.34e-25 99.8
Msa1282670 MtrunA17_Chr2g0290611 31.737 167 111 3 5 171 127 290 3.85e-24 96.7
Msa1282670 MtrunA17_Chr1g0164831 30.409 171 109 4 4 171 115 278 4.77e-24 96.3
Msa1282670 MtrunA17_Chr1g0177221 36.170 141 81 4 3 141 131 264 5.84e-24 94.7
Msa1282670 MtrunA17_Chr4g0050891 30.814 172 113 4 4 172 127 295 6.73e-24 96.3
Msa1282670 MtrunA17_Chr2g0278551 33.533 167 108 3 5 171 127 290 3.50e-23 94.7
Msa1282670 MtrunA17_Chr5g0413941 30.726 179 105 4 1 172 118 284 3.56e-23 94.0
Msa1282670 MtrunA17_Chr2g0310441 31.792 173 104 4 4 172 126 288 6.61e-23 93.6
Msa1282670 MtrunA17_Chr4g0050931 31.214 173 113 3 4 172 87 257 1.33e-22 92.0
Msa1282670 MtrunA17_Chr5g0413951 29.050 179 108 4 1 172 118 284 1.43e-22 92.4
Msa1282670 MtrunA17_Chr2g0278561 34.302 172 103 4 4 171 129 294 1.47e-22 92.8
Msa1282670 MtrunA17_Chr5g0413921 31.977 172 110 3 1 171 118 283 2.12e-22 91.7
Msa1282670 MtrunA17_Chr1g0184221 29.586 169 110 2 3 171 143 302 3.30e-22 91.7
Msa1282670 MtrunA17_Chr4g0050941 33.714 175 108 5 3 172 126 297 3.35e-22 91.7
Msa1282670 MtrunA17_Chr1g0186561 37.427 171 98 5 3 171 129 292 5.01e-22 90.9
Msa1282670 MtrunA17_Chr8g0334751 33.929 168 106 3 4 171 126 288 1.08e-21 90.1
Msa1282670 MtrunA17_Chr7g0271561 28.902 173 119 2 3 172 120 291 3.44e-21 89.0
Msa1282670 MtrunA17_Chr4g0051001 30.409 171 113 4 3 171 144 310 4.59e-21 88.2
Msa1282670 MtrunA17_Chr3g0142131 29.050 179 117 2 3 172 133 310 4.68e-21 88.6
Msa1282670 MtrunA17_Chr2g0278021 36.000 175 100 5 4 171 1 170 4.83e-21 87.4
Msa1282670 MtrunA17_Chr8g0334771 31.765 170 107 3 4 171 125 287 4.93e-21 88.6
Msa1282670 MtrunA17_Chr4g0051021 29.412 170 115 3 3 171 127 292 4.97e-21 88.6
Msa1282670 MtrunA17_Chr4g0059311 29.070 172 111 3 3 171 125 288 8.69e-21 87.4
Msa1282670 MtrunA17_Chr1g0150151 29.310 174 112 3 3 172 125 291 1.46e-20 87.0
Msa1282670 MtrunA17_Chr1g0172881 31.507 146 78 5 1 141 21 149 4.25e-20 82.0
Msa1282670 MtrunA17_Chr5g0413931 31.034 174 111 4 1 172 117 283 4.27e-20 85.5
Msa1282670 MtrunA17_Chr7g0227921 32.948 173 104 7 3 172 124 287 4.56e-20 85.9
Msa1282670 MtrunA17_Chr1g0155761 27.807 187 114 3 3 172 134 316 1.09e-19 85.1
Msa1282670 MtrunA17_Chr2g0332001 27.429 175 108 5 4 171 152 314 7.50e-19 82.4
Msa1282670 MtrunA17_Chr4g0073241 28.824 170 107 4 5 171 126 284 1.35e-18 81.6
Msa1282670 MtrunA17_Chr8g0372571 68.182 44 14 0 121 164 2 45 1.82e-18 75.5
Msa1282670 MtrunA17_Chr4g0021721 68.182 44 14 0 121 164 2 45 2.61e-18 74.7
Msa1282670 MtrunA17_Chr6g0451261 35.260 173 99 5 3 171 124 287 9.31e-18 80.1
Msa1282670 MtrunA17_Chr5g0404811 28.070 171 118 3 3 172 6 172 2.18e-17 77.0
Msa1282670 MtrunA17_Chr1g0160111 22.093 172 131 2 3 172 120 290 6.12e-17 77.0
Msa1282670 MtrunA17_Chr3g0126101 30.178 169 111 3 3 171 118 279 7.01e-17 76.6
Msa1282670 MtrunA17_Chr6g0451191 26.036 169 117 2 4 172 1 161 2.46e-16 73.9
Msa1282670 MtrunA17_Chr5g0441761 24.852 169 117 2 3 171 127 285 3.19e-15 72.0
Msa1282670 MtrunA17_Chr5g0413961 27.647 170 113 4 3 171 126 286 1.37e-14 70.5
Msa1282670 MtrunA17_Chr6g0451171 25.882 170 118 3 3 172 125 286 2.36e-14 69.7
Msa1282670 MtrunA17_Chr6g0451201 25.882 170 118 3 3 172 123 284 3.27e-14 69.3
Msa1282670 MtrunA17_Chr1g0211801 28.986 138 94 3 4 141 123 256 1.16e-13 67.0
Msa1282670 MtrunA17_Chr5g0408001 28.495 186 114 4 1 172 121 301 1.65e-13 67.4
Msa1282670 MtrunA17_Chr3g0084091 23.077 169 126 2 3 171 43 207 1.85e-13 66.6
Msa1282670 MtrunA17_Chr5g0407971 28.022 182 112 6 5 172 126 302 3.32e-13 66.6
Msa1282670 MtrunA17_Chr6g0451251 25.146 171 118 3 3 172 126 287 1.71e-12 64.3
Msa1282670 MtrunA17_Chr1g0182261 45.946 74 37 3 100 170 94 167 1.99e-12 63.2
Msa1282670 MtrunA17_Chr6g0451211 27.647 170 116 3 3 172 127 289 1.17e-11 62.0
Msa1282670 MtrunA17_Chr4g0050921 35.802 81 51 1 92 172 3 82 1.87e-11 58.5
Msa1282670 MtrunA17_Chr5g0429001 23.529 170 128 2 3 171 64 232 2.47e-11 60.8
Msa1282670 MtrunA17_Chr8g0334711 39.286 84 47 2 4 87 124 203 2.93e-11 59.7
Msa1282670 MtrunA17_Chr1g0150651 31.765 85 56 1 4 88 1 83 3.40e-11 56.6
Msa1282670 MtrunA17_Chr5g0428881 23.669 169 127 2 3 171 131 297 4.20e-11 60.5
Msa1282670 MtrunA17_Chr3g0126091 21.893 169 127 2 3 171 127 290 5.85e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1282670 AT5G07050.1 62.791 172 61 1 3 171 130 301 2.39e-74 228
Msa1282670 AT2G40900.1 47.929 169 78 2 3 171 123 281 1.24e-54 177
Msa1282670 AT3G56620.1 47.337 169 80 3 3 171 123 282 2.50e-48 161
Msa1282670 AT4G08290.1 42.604 169 94 2 3 171 125 290 5.64e-48 160
Msa1282670 AT1G21890.2 41.954 174 95 2 3 171 123 295 3.41e-43 147
Msa1282670 AT1G21890.1 41.954 174 95 2 3 171 123 295 5.82e-43 147
Msa1282670 AT2G39510.1 40.588 170 95 4 3 171 120 284 1.45e-41 143
Msa1282670 AT2G37460.1 42.012 169 90 3 4 171 128 289 6.67e-41 142
Msa1282670 AT1G44800.1 39.053 169 98 2 3 171 123 286 1.06e-40 141
Msa1282670 AT4G08300.1 37.572 173 98 4 3 171 123 289 6.84e-36 128
Msa1282670 AT2G37450.3 40.588 170 93 3 3 171 28 190 1.80e-34 122
Msa1282670 AT2G37450.2 40.588 170 93 3 3 171 100 262 8.50e-34 122
Msa1282670 AT2G37450.1 39.766 171 95 3 2 171 60 223 1.33e-33 120
Msa1282670 AT5G13670.1 38.824 170 100 4 3 171 120 286 5.54e-33 120
Msa1282670 AT4G08290.2 38.406 138 82 2 3 140 125 259 4.41e-32 116
Msa1282670 AT5G64700.1 29.070 172 114 3 4 170 121 289 1.60e-29 111
Msa1282670 AT3G30340.1 33.529 170 107 3 3 171 123 287 1.83e-27 106
Msa1282670 AT4G30420.1 35.928 167 102 3 5 171 116 277 7.09e-27 104
Msa1282670 AT4G30420.2 35.928 167 102 3 5 171 126 287 7.60e-27 104
Msa1282670 AT1G75500.1 35.393 178 105 5 1 172 130 303 3.01e-25 100
Msa1282670 AT1G75500.2 35.393 178 105 5 1 172 130 303 3.01e-25 100
Msa1282670 AT1G09380.1 30.409 171 114 3 3 171 120 287 1.44e-24 98.6
Msa1282670 AT3G53210.2 30.178 169 114 2 4 172 66 230 2.19e-22 91.7
Msa1282670 AT3G53210.1 30.178 169 114 2 4 172 123 287 4.49e-22 91.7
Msa1282670 AT4G01440.5 28.824 170 114 3 3 171 14 177 5.27e-22 89.7
Msa1282670 AT4G01440.2 28.824 170 114 3 3 171 14 177 5.27e-22 89.7
Msa1282670 AT3G18200.1 33.140 172 104 5 3 172 17 179 9.22e-22 89.0
Msa1282670 AT4G01440.3 28.824 170 114 3 3 171 122 285 2.77e-21 89.0
Msa1282670 AT4G01440.1 28.824 170 114 3 3 171 122 285 3.02e-21 89.4
Msa1282670 AT3G18200.2 33.140 172 104 5 3 172 147 309 7.76e-21 88.2
Msa1282670 AT1G25270.1 29.412 170 117 3 3 172 115 281 3.08e-19 83.6
Msa1282670 AT3G28100.1 30.994 171 113 3 3 172 126 292 5.11e-19 83.2
Msa1282670 AT3G30340.2 31.169 154 97 4 3 155 123 268 5.39e-19 82.0
Msa1282670 AT1G68170.1 27.485 171 122 2 1 171 113 281 5.96e-19 82.8
Msa1282670 AT1G68170.2 27.811 169 120 2 3 171 125 291 5.98e-19 83.2
Msa1282670 AT4G01430.2 29.697 165 112 2 8 171 127 288 1.58e-18 81.3
Msa1282670 AT4G01430.1 29.697 165 112 2 8 171 127 288 1.91e-18 81.6
Msa1282670 AT5G40240.1 31.034 174 110 4 3 172 132 299 3.31e-18 80.9
Msa1282670 AT5G40240.3 31.034 174 110 4 3 172 132 299 3.31e-18 80.9
Msa1282670 AT5G40240.2 31.034 174 110 4 3 172 146 313 3.85e-18 80.9
Msa1282670 AT4G01430.3 29.870 154 104 2 19 171 1 151 7.53e-18 78.2
Msa1282670 AT5G64700.2 25.175 143 99 3 4 141 121 260 8.66e-18 78.6
Msa1282670 AT3G28070.2 29.412 170 117 2 3 172 37 203 1.04e-17 78.6
Msa1282670 AT3G28070.3 29.412 170 117 2 3 172 129 295 1.85e-17 78.6
Msa1282670 AT1G43650.1 27.811 169 114 3 3 171 119 279 2.72e-17 78.2
Msa1282670 AT3G28070.1 29.412 170 117 2 3 172 129 295 2.75e-17 78.2
Msa1282670 AT3G28070.5 28.994 169 117 2 4 172 1 166 5.25e-17 75.9
Msa1282670 AT3G28050.1 25.294 170 119 2 3 172 124 285 1.26e-16 76.6
Msa1282670 AT3G28130.5 32.184 174 107 7 3 172 39 205 3.83e-16 74.3
Msa1282670 AT3G28130.1 32.184 174 107 7 3 172 39 205 3.83e-16 74.3
Msa1282670 AT3G28080.5 28.655 171 117 3 3 172 37 203 4.20e-16 73.9
Msa1282670 AT3G28080.7 28.655 171 117 3 3 172 37 203 4.20e-16 73.9
Msa1282670 AT3G28080.8 28.655 171 117 3 3 172 37 203 4.20e-16 73.9
Msa1282670 AT3G28080.6 28.655 171 117 3 3 172 37 203 4.20e-16 73.9
Msa1282670 AT3G28130.2 32.184 174 107 7 3 172 125 291 7.03e-16 74.3
Msa1282670 AT3G28080.2 28.655 171 117 3 3 172 118 284 1.09e-15 73.9
Msa1282670 AT3G28080.1 28.655 171 117 3 3 172 126 292 1.11e-15 73.9
Msa1282670 AT4G28040.1 28.070 171 103 6 4 172 123 275 1.58e-15 73.6
Msa1282670 AT4G28040.5 28.070 171 103 6 4 172 123 275 1.58e-15 73.6
Msa1282670 AT4G28040.3 28.070 171 103 6 4 172 123 275 1.58e-15 73.6
Msa1282670 AT4G28040.4 28.070 171 103 6 4 172 123 275 1.58e-15 73.6
Msa1282670 AT4G28040.2 28.070 171 103 6 4 172 123 275 1.58e-15 73.6
Msa1282670 AT3G28080.9 28.402 169 116 3 4 171 1 165 2.01e-15 71.6
Msa1282670 AT3G28130.3 31.977 172 106 7 4 171 1 165 2.01e-15 71.6
Msa1282670 AT5G40230.1 29.412 170 118 2 3 172 133 300 2.01e-14 70.5
Msa1282670 AT1G70260.1 26.036 169 119 3 6 171 130 295 2.53e-14 70.1
Msa1282670 AT4G01440.4 27.857 140 94 3 3 141 122 255 3.99e-14 68.9
Msa1282670 AT3G45870.6 25.989 177 122 3 3 172 49 223 7.96e-14 67.8
Msa1282670 AT3G45870.7 25.989 177 122 3 3 172 49 223 7.96e-14 67.8
Msa1282670 AT3G28100.3 31.111 135 89 2 3 136 126 257 1.24e-13 67.4
Msa1282670 AT3G45870.5 25.989 177 122 3 3 172 49 223 1.37e-13 67.8
Msa1282670 AT3G53210.3 29.365 126 85 2 4 129 123 244 2.38e-13 66.6
Msa1282670 AT1G01070.2 25.882 170 121 3 3 171 81 246 2.77e-13 67.0
Msa1282670 AT5G40210.1 28.736 174 95 5 3 172 125 273 3.22e-13 66.6
Msa1282670 AT1G01070.1 27.011 174 114 5 3 171 128 293 3.85e-13 66.6
Msa1282670 AT4G15540.1 27.059 170 109 2 3 172 129 283 6.09e-13 65.9
Msa1282670 AT4G15540.2 27.059 170 109 2 3 172 129 283 6.09e-13 65.9
Msa1282670 AT3G45870.8 25.714 175 121 3 5 172 126 298 6.40e-13 65.9
Msa1282670 AT1G11450.1 26.012 173 117 4 3 172 36 200 1.00e-12 64.7
Msa1282670 AT3G45870.1 25.714 175 121 3 5 172 126 298 1.00e-12 65.5
Msa1282670 AT1G11450.2 26.012 173 117 4 3 172 77 241 1.74e-12 64.3
Msa1282670 AT1G11450.5 26.012 173 117 4 3 172 84 248 1.83e-12 64.3
Msa1282670 AT1G11450.3 26.012 173 117 4 3 172 128 292 1.86e-12 64.7
Msa1282670 AT1G11460.1 27.168 173 114 5 3 171 128 292 1.98e-12 64.7
Msa1282670 AT1G11450.4 26.012 173 117 4 3 172 128 292 2.15e-12 64.3
Msa1282670 AT4G19185.2 25.137 183 124 5 1 172 53 233 4.48e-11 60.5
Msa1282670 AT4G19185.1 25.137 183 124 5 1 172 131 311 6.44e-11 60.5
Msa1282670 AT3G28130.4 31.159 138 87 5 3 137 125 257 8.79e-11 59.3

Find 37 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTCACTTGTGGTCTTTAT+TGG 0.168621 8_3:+23397538 Msa1282670:CDS
AAGATGCCAATCAAAGATAT+TGG 0.282191 8_3:+23395740 Msa1282670:CDS
CATATTCCATTTCTCTTAAG+TGG 0.348028 8_3:-23398142 None:intergenic
TTTAGCCCACTTAAGAGAAA+TGG 0.359340 8_3:+23398136 Msa1282670:CDS
TTATCATTGCCACCTTTGCT+TGG 0.363715 8_3:+23395922 Msa1282670:CDS
CAGGATCTTCTGAAAGAGAT+TGG 0.374788 8_3:+23395880 Msa1282670:CDS
TATCATTGCCACCTTTGCTT+GGG 0.380505 8_3:+23395923 Msa1282670:CDS
ATGTACAAGGGCTAGTGATT+AGG 0.401274 8_3:+23398086 Msa1282670:CDS
ATGTTAATGACATTATATAA+AGG 0.410358 8_3:+23395789 Msa1282670:CDS
AGATGCCAATCAAAGATATT+GGG 0.412527 8_3:+23395741 Msa1282670:CDS
TTGTTCCCAATATCTTTGAT+TGG 0.432061 8_3:-23395746 None:intergenic
CTTCTGTATGGAGGATTGGT+TGG 0.434265 8_3:+23397605 Msa1282670:CDS
GTCCTATTGTGGAGATGGTA+TGG 0.436646 8_3:+23395811 Msa1282670:CDS
TTCTGTATGGAGGATTGGTT+GGG 0.449804 8_3:+23397606 Msa1282670:CDS
GCCCATACCATCTCCACAAT+AGG 0.458933 8_3:-23395813 None:intergenic
GATCCTTCTGTATGGAGGAT+TGG 0.467856 8_3:+23397601 Msa1282670:CDS
ATTTCTCTTAAGTGGGCTAA+AGG 0.489186 8_3:-23398134 None:intergenic
CTGAGCATGATCCTTCTGTA+TGG 0.494380 8_3:+23397593 Msa1282670:CDS
GGGAATTGTGACCTCAAGCT+TGG 0.497579 8_3:+23398057 Msa1282670:intron
CTAAAGGCAGTTGCAAAGAC+AGG 0.501855 8_3:-23398118 None:intergenic
ATATTCCATTTCTCTTAAGT+GGG 0.514598 8_3:-23398141 None:intergenic
AGCTTGGCATACTATGTACA+AGG 0.527654 8_3:+23398073 Msa1282670:CDS
TAAAGGTCCTATTGTGGAGA+TGG 0.529191 8_3:+23395806 Msa1282670:CDS
GGGCTAGTGATTAGGAAGAA+AGG 0.551748 8_3:+23398094 Msa1282670:CDS
ATTGAAAATACTTACAGCAT+AGG 0.556807 8_3:-23397650 None:intergenic
ATCTCTTTCAGAAGATCCTG+TGG 0.563505 8_3:-23395877 None:intergenic
ACCAAGTCTTACTTCACTTG+TGG 0.565906 8_3:+23397528 Msa1282670:CDS
TCCTATTGTGGAGATGGTAT+GGG 0.568336 8_3:+23395812 Msa1282670:CDS
GAGTGAAGCCCAAGCAAAGG+TGG 0.584171 8_3:-23395931 None:intergenic
ATTATATAAAGGTCCTATTG+TGG 0.588030 8_3:+23395800 Msa1282670:CDS
ACACATGAAACAACAACCAC+AGG 0.596729 8_3:+23395861 Msa1282670:CDS
ACCACAAGTGAAGTAAGACT+TGG 0.606215 8_3:-23397529 None:intergenic
TACATAGTATGCCAAGCTTG+AGG 0.608423 8_3:-23398068 None:intergenic
AAAGAGTGAAGCCCAAGCAA+AGG 0.613193 8_3:-23395934 None:intergenic
CAACCAATCCTCCATACAGA+AGG 0.613695 8_3:-23397604 None:intergenic
AGCATGATCCTTCTGTATGG+AGG 0.629537 8_3:+23397596 Msa1282670:CDS
GCTTGGCATACTATGTACAA+GGG 0.751986 8_3:+23398074 Msa1282670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTTTAAATATGAAA+AGG + chr8_3:23395691-23395710 Msa1282670:exon 10.0%
!!! TTTTTGTGAAAATTATTTAT+TGG + chr8_3:23397468-23397487 Msa1282670:intron 10.0%
!!! TTTTGTGAAAATTATTTATT+GGG + chr8_3:23397469-23397488 Msa1282670:intron 10.0%
!! TTAAAAAATTGTCAAAAAAA+TGG - chr8_3:23397892-23397911 None:intergenic 10.0%
!! CAAAAATAAAGTAAATTATT+AGG - chr8_3:23398034-23398053 None:intergenic 10.0%
!!! TAATTTACTTTATTTTTGTT+AGG + chr8_3:23398036-23398055 Msa1282670:intron 10.0%
!!! AATTTACTTTATTTTTGTTA+GGG + chr8_3:23398037-23398056 Msa1282670:intron 10.0%
!! ATGTTAATGACATTATATAA+AGG + chr8_3:23395789-23395808 Msa1282670:CDS 15.0%
!! TTTGTTACATATGAAAAATT+TGG - chr8_3:23396826-23396845 None:intergenic 15.0%
!!! ATGAAAAAAAGTATAAATGA+TGG - chr8_3:23397268-23397287 None:intergenic 15.0%
!!! ATCATTTATACTTTTTTTCA+TGG + chr8_3:23397267-23397286 Msa1282670:intron 15.0%
!!! AAATTATTTTTACAATTCGA+CGG + chr8_3:23397797-23397816 Msa1282670:intron 15.0%
!!! GTTTTTAAATATGAAAAGGA+TGG + chr8_3:23395695-23395714 Msa1282670:exon 20.0%
!!! GGTAATTTTGGAAAAAAATA+GGG - chr8_3:23396052-23396071 None:intergenic 20.0%
!!! GCTACAGATTTTAAAAATAA+CGG + chr8_3:23396167-23396186 Msa1282670:intron 20.0%
!!! ATGATGGAATTTTGAATTTT+GGG - chr8_3:23397252-23397271 None:intergenic 20.0%
!!! AATGATGGAATTTTGAATTT+TGG - chr8_3:23397253-23397272 None:intergenic 20.0%
!! TGAAAATTATTTATTGGGTT+AGG + chr8_3:23397474-23397493 Msa1282670:intron 20.0%
!!! GTGTTTTTACTCTATTATTT+TGG + chr8_3:23397933-23397952 Msa1282670:intron 20.0%
! ACAAAAATGAGCAATTATCA+AGG - chr8_3:23395677-23395696 None:intergenic 25.0%
! ATTATATAAAGGTCCTATTG+TGG + chr8_3:23395800-23395819 Msa1282670:CDS 25.0%
!!! ATTTTGAGGATGTCTATTTT+TGG - chr8_3:23395838-23395857 None:intergenic 25.0%
!!! GGGTAATTTTGGAAAAAAAT+AGG - chr8_3:23396053-23396072 None:intergenic 25.0%
!!! TTTTTTTCCAAAATTACCCT+CGG + chr8_3:23396054-23396073 Msa1282670:intron 25.0%
! ATTCTGTAAAAACATCATTC+CGG - chr8_3:23396100-23396119 None:intergenic 25.0%
! TCTTAATTTCTTTCTTCCAA+AGG + chr8_3:23396276-23396295 Msa1282670:intron 25.0%
!! GAAGTTTTCAAATACTTGTT+AGG + chr8_3:23396313-23396332 Msa1282670:intron 25.0%
! GAATTGCATAAAAAATGGTT+GGG - chr8_3:23396497-23396516 None:intergenic 25.0%
! TGAATTGCATAAAAAATGGT+TGG - chr8_3:23396498-23396517 None:intergenic 25.0%
!! GCTTTGAATTGCATAAAAAA+TGG - chr8_3:23396502-23396521 None:intergenic 25.0%
!!! TTGTTTCTGGAAAAAAGTAT+TGG + chr8_3:23396522-23396541 Msa1282670:intron 25.0%
!!! AATTTTGGGTGTAAAAATCA+TGG - chr8_3:23397238-23397257 None:intergenic 25.0%
!!! GCATTTTTGGAAAATTTACA+GGG + chr8_3:23397331-23397350 Msa1282670:intron 25.0%
! ATTGAAAATACTTACAGCAT+AGG - chr8_3:23397653-23397672 None:intergenic 25.0%
! ATATTCCATTTCTCTTAAGT+GGG - chr8_3:23398144-23398163 None:intergenic 25.0%
AAGATGCCAATCAAAGATAT+TGG + chr8_3:23395740-23395759 Msa1282670:CDS 30.0%
AGATGCCAATCAAAGATATT+GGG + chr8_3:23395741-23395760 Msa1282670:CDS 30.0%
TTGTTCCCAATATCTTTGAT+TGG - chr8_3:23395749-23395768 None:intergenic 30.0%
! GTTTCATGTGTTTCATTTTG+AGG - chr8_3:23395852-23395871 None:intergenic 30.0%
! TCTGAAAGAGATTGGATTTT+AGG + chr8_3:23395888-23395907 Msa1282670:CDS 30.0%
! CTGAAAGAGATTGGATTTTA+GGG + chr8_3:23395889-23395908 Msa1282670:CDS 30.0%
! GTTTTCCGGATTTTATAATC+CGG + chr8_3:23396078-23396097 Msa1282670:intron 30.0%
TCATTCCGGATTATAAAATC+CGG - chr8_3:23396086-23396105 None:intergenic 30.0%
! TTTTAAGCTTTCTATTGCTG+TGG + chr8_3:23396128-23396147 Msa1282670:intron 30.0%
! AATGGTTGGGATATTTTGTT+GGG - chr8_3:23396484-23396503 None:intergenic 30.0%
! AAATGGTTGGGATATTTTGT+TGG - chr8_3:23396485-23396504 None:intergenic 30.0%
TAATCCGGAATGTGATTATA+TGG - chr8_3:23396566-23396585 None:intergenic 30.0%
! ACAATTCGGATTTTGTAATC+CGG - chr8_3:23396581-23396600 None:intergenic 30.0%
ACGTTGAAAGTCAACAAATA+GGG - chr8_3:23396647-23396666 None:intergenic 30.0%
! TTTTTCCGGATTTTGTAATC+CGG + chr8_3:23396677-23396696 Msa1282670:intron 30.0%
!! ACATATGAAAAATTTGGTGC+TGG - chr8_3:23396820-23396839 None:intergenic 30.0%
TTGCAAATTCAACATCGTTA+AGG - chr8_3:23396911-23396930 None:intergenic 30.0%
AAATTCTAGATGCTCTAACA+TGG + chr8_3:23396964-23396983 Msa1282670:intron 30.0%
AGAAATAAGCTAAGAAGCTT+AGG + chr8_3:23397120-23397139 Msa1282670:intron 30.0%
!! GGCATTTTTGGAAAATTTAC+AGG + chr8_3:23397330-23397349 Msa1282670:intron 30.0%
ATCTTAAGTCCCTTGAATAT+AGG - chr8_3:23397973-23397992 None:intergenic 30.0%
CATATTCCATTTCTCTTAAG+TGG - chr8_3:23398145-23398164 None:intergenic 30.0%
AACGGTGCACTTAACATTTA+TGG + chr8_3:23396185-23396204 Msa1282670:intron 35.0%
CACTTAACATTTATGGAGAG+AGG + chr8_3:23396192-23396211 Msa1282670:intron 35.0%
CTCATTCATCACAAGAGTTA+TGG + chr8_3:23396380-23396399 Msa1282670:intron 35.0%
AGAAATAAGTACTCCAACAC+CGG + chr8_3:23396439-23396458 Msa1282670:intron 35.0%
AAGAATAAATCCTTGGAACC+CGG - chr8_3:23396461-23396480 None:intergenic 35.0%
TGTTGGGAAGAATAAATCCT+TGG - chr8_3:23396468-23396487 None:intergenic 35.0%
! TGCAATTCAAAGCTTGTTTC+TGG + chr8_3:23396509-23396528 Msa1282670:intron 35.0%
TCCTCCATATAATCACATTC+CGG + chr8_3:23396559-23396578 Msa1282670:intron 35.0%
CCGGAATACGTTAAACAATT+CGG - chr8_3:23396595-23396614 None:intergenic 35.0%
CCGAATTGTTTAACGTATTC+CGG + chr8_3:23396592-23396611 Msa1282670:intron 35.0%
GTATTCCGGATTATGTAATC+CGG + chr8_3:23396606-23396625 Msa1282670:intron 35.0%
TGTTTCCGGATTACATAATC+CGG - chr8_3:23396614-23396633 None:intergenic 35.0%
AGGGTGAAAAATGATGTTTC+CGG - chr8_3:23396628-23396647 None:intergenic 35.0%
CACGTTGAAAGTCAACAAAT+AGG - chr8_3:23396648-23396667 None:intergenic 35.0%
TTGACTTTCAACGTGAGTTA+CGG + chr8_3:23396653-23396672 Msa1282670:intron 35.0%
ATCCGGAAAGCTCAAAAAAT+AGG + chr8_3:23396694-23396713 Msa1282670:intron 35.0%
TCCGGAAAGCTCAAAAAATA+GGG + chr8_3:23396695-23396714 Msa1282670:intron 35.0%
!! ATGAAAAAAGGGTGTTTAGG+GGG - chr8_3:23396759-23396778 None:intergenic 35.0%
!! CATGAAAAAAGGGTGTTTAG+GGG - chr8_3:23396760-23396779 None:intergenic 35.0%
!! CCATGAAAAAAGGGTGTTTA+GGG - chr8_3:23396761-23396780 None:intergenic 35.0%
!! ACCATGAAAAAAGGGTGTTT+AGG - chr8_3:23396762-23396781 None:intergenic 35.0%
GCAATCCGGATTCTATATTA+CGG + chr8_3:23396788-23396807 Msa1282670:intron 35.0%
GCATTCCGTAATATAGAATC+CGG - chr8_3:23396796-23396815 None:intergenic 35.0%
GCATCTAAACTCTTAGAATC+AGG + chr8_3:23396864-23396883 Msa1282670:intron 35.0%
AGCATGCAATGAGTTTGATA+CGG - chr8_3:23396941-23396960 None:intergenic 35.0%
TCACCATCTGCAGATTATTA+AGG + chr8_3:23396991-23397010 Msa1282670:intron 35.0%
TTGCCTTAATAATCTGCAGA+TGG - chr8_3:23396997-23397016 None:intergenic 35.0%
ATAATAAGTTCAACCAAGCC+AGG + chr8_3:23397160-23397179 Msa1282670:intron 35.0%
AATCATGGAGCAAATGATAG+AGG - chr8_3:23397223-23397242 None:intergenic 35.0%
ACTTCACTTGTGGTCTTTAT+TGG + chr8_3:23397538-23397557 Msa1282670:CDS 35.0%
!!! AGCTATTGCTGTTACTTTTG+TGG + chr8_3:23397570-23397589 Msa1282670:CDS 35.0%
! TGTGTCGATACCTATATTCA+AGG + chr8_3:23397960-23397979 Msa1282670:intron 35.0%
! GTGTCGATACCTATATTCAA+GGG + chr8_3:23397961-23397980 Msa1282670:intron 35.0%
!! ATTTCTCTTAAGTGGGCTAA+AGG - chr8_3:23398137-23398156 None:intergenic 35.0%
TTTAGCCCACTTAAGAGAAA+TGG + chr8_3:23398136-23398155 Msa1282670:CDS 35.0%
!! GGAACAATTTTGACAGTAGC+TGG + chr8_3:23395762-23395781 Msa1282670:CDS 40.0%
TAAAGGTCCTATTGTGGAGA+TGG + chr8_3:23395806-23395825 Msa1282670:CDS 40.0%
TCCTATTGTGGAGATGGTAT+GGG + chr8_3:23395812-23395831 Msa1282670:CDS 40.0%
ACACATGAAACAACAACCAC+AGG + chr8_3:23395861-23395880 Msa1282670:CDS 40.0%
ATCTCTTTCAGAAGATCCTG+TGG - chr8_3:23395880-23395899 None:intergenic 40.0%
! CAGGATCTTCTGAAAGAGAT+TGG + chr8_3:23395880-23395899 Msa1282670:CDS 40.0%
TTATCATTGCCACCTTTGCT+TGG + chr8_3:23395922-23395941 Msa1282670:CDS 40.0%
TATCATTGCCACCTTTGCTT+GGG + chr8_3:23395923-23395942 Msa1282670:CDS 40.0%
! GAAAACTCCGAGGGTAATTT+TGG - chr8_3:23396064-23396083 None:intergenic 40.0%
! AAATTACCCTCGGAGTTTTC+CGG + chr8_3:23396064-23396083 Msa1282670:intron 40.0%
TAAAATCCGGAAAACTCCGA+GGG - chr8_3:23396073-23396092 None:intergenic 40.0%
ATAAAATCCGGAAAACTCCG+AGG - chr8_3:23396074-23396093 None:intergenic 40.0%
GCTTTCTATTGCTGTGGAAT+TGG + chr8_3:23396134-23396153 Msa1282670:intron 40.0%
GAAATAAGTACTCCAACACC+GGG + chr8_3:23396440-23396459 Msa1282670:intron 40.0%
TCCGGAATGTGATTATATGG+AGG - chr8_3:23396563-23396582 None:intergenic 40.0%
! ACGTGAGTTACGGATTTTTC+CGG + chr8_3:23396663-23396682 Msa1282670:intron 40.0%
GCTTTCCGGATTACAAAATC+CGG - chr8_3:23396685-23396704 None:intergenic 40.0%
!!! GCCCTATTTTTTGAGCTTTC+CGG - chr8_3:23396699-23396718 None:intergenic 40.0%
!!! GGCGCGTTACATGATTTTTT+CGG + chr8_3:23396716-23396735 Msa1282670:intron 40.0%
!!! CCCTAAACACCCTTTTTTCA+TGG + chr8_3:23396758-23396777 Msa1282670:intron 40.0%
GCATCAGCACCATGAAAAAA+GGG - chr8_3:23396770-23396789 None:intergenic 40.0%
TGCATCAGCACCATGAAAAA+AGG - chr8_3:23396771-23396790 None:intergenic 40.0%
TGAATGATCCGACACTTGTA+CGG + chr8_3:23397040-23397059 Msa1282670:intron 40.0%
! TGTTTCTACCGTACAAGTGT+CGG - chr8_3:23397051-23397070 None:intergenic 40.0%
! TTCATGGTGCTAATGCAATC+CGG + chr8_3:23397283-23397302 Msa1282670:intron 40.0%
GCAATCCGGATTCTATAATC+CGG + chr8_3:23397297-23397316 Msa1282670:intron 40.0%
GCATTCCGGATTATAGAATC+CGG - chr8_3:23397305-23397324 None:intergenic 40.0%
TCTATAATCCGGAATGCACA+AGG + chr8_3:23397308-23397327 Msa1282670:intron 40.0%
CTATAATCCGGAATGCACAA+GGG + chr8_3:23397309-23397328 Msa1282670:intron 40.0%
AAAAATGCCCTTGTGCATTC+CGG - chr8_3:23397319-23397338 None:intergenic 40.0%
!! GTATTACTTTTCCCACCCTA+TGG - chr8_3:23397369-23397388 None:intergenic 40.0%
ACCAAGTCTTACTTCACTTG+TGG + chr8_3:23397528-23397547 Msa1282670:CDS 40.0%
ACCACAAGTGAAGTAAGACT+TGG - chr8_3:23397532-23397551 None:intergenic 40.0%
!! TTCTGTATGGAGGATTGGTT+GGG + chr8_3:23397606-23397625 Msa1282670:CDS 40.0%
TACATAGTATGCCAAGCTTG+AGG - chr8_3:23398071-23398090 None:intergenic 40.0%
AGCTTGGCATACTATGTACA+AGG + chr8_3:23398073-23398092 Msa1282670:CDS 40.0%
GCTTGGCATACTATGTACAA+GGG + chr8_3:23398074-23398093 Msa1282670:CDS 40.0%
! ATGTACAAGGGCTAGTGATT+AGG + chr8_3:23398086-23398105 Msa1282670:CDS 40.0%
GTCCTATTGTGGAGATGGTA+TGG + chr8_3:23395811-23395830 Msa1282670:CDS 45.0%
AAAGAGTGAAGCCCAAGCAA+AGG - chr8_3:23395937-23395956 None:intergenic 45.0%
!! TCATTCAGTGCTGATGCCTT+TGG - chr8_3:23396295-23396314 None:intergenic 45.0%
!!! AAGGGTGTTTAGGGGGTTTT+CGG - chr8_3:23396752-23396771 None:intergenic 45.0%
!! TTCATGGTGCTGATGCAATC+CGG + chr8_3:23396774-23396793 Msa1282670:intron 45.0%
!!! GGAATGCACAAGGGCATTTT+TGG + chr8_3:23397318-23397337 Msa1282670:intron 45.0%
CTGAGCATGATCCTTCTGTA+TGG + chr8_3:23397593-23397612 Msa1282670:CDS 45.0%
AGCATGATCCTTCTGTATGG+AGG + chr8_3:23397596-23397615 Msa1282670:CDS 45.0%
GATCCTTCTGTATGGAGGAT+TGG + chr8_3:23397601-23397620 Msa1282670:CDS 45.0%
CAACCAATCCTCCATACAGA+AGG - chr8_3:23397607-23397626 None:intergenic 45.0%
! CTTCTGTATGGAGGATTGGT+TGG + chr8_3:23397605-23397624 Msa1282670:CDS 45.0%
! GGGCTAGTGATTAGGAAGAA+AGG + chr8_3:23398094-23398113 Msa1282670:CDS 45.0%
CTAAAGGCAGTTGCAAAGAC+AGG - chr8_3:23398121-23398140 None:intergenic 45.0%
GCCCATACCATCTCCACAAT+AGG - chr8_3:23395816-23395835 None:intergenic 50.0%
AAATCCTTGGAACCCGGTGT+TGG - chr8_3:23396455-23396474 None:intergenic 50.0%
GGGAATTGTGACCTCAAGCT+TGG + chr8_3:23398057-23398076 Msa1282670:intron 50.0%
GAGTGAAGCCCAAGCAAAGG+TGG - chr8_3:23395934-23395953 None:intergenic 55.0%
! CGCGAGGAAAGGCATAGGAT+GGG - chr8_3:23396027-23396046 None:intergenic 55.0%
AAAATAGGGCGCGCGAGGAA+AGG - chr8_3:23396038-23396057 None:intergenic 55.0%
GGAAAAAAATAGGGCGCGCG+AGG - chr8_3:23396043-23396062 None:intergenic 55.0%
TACTCCAACACCGGGTTCCA+AGG + chr8_3:23396448-23396467 Msa1282670:intron 55.0%
! CAACCAAGCCAGGAGCACAT+TGG + chr8_3:23397170-23397189 Msa1282670:intron 55.0%
ACTCCAATGTGCTCCTGGCT+TGG - chr8_3:23397176-23397195 None:intergenic 55.0%
AGTGCACTCCAATGTGCTCC+TGG - chr8_3:23397181-23397200 None:intergenic 55.0%
AGGGTGCGAGAGAAGACCAT+AGG + chr8_3:23397350-23397369 Msa1282670:intron 55.0%
GGGTGCGAGAGAAGACCATA+GGG + chr8_3:23397351-23397370 Msa1282670:intron 55.0%
TGCGAGAGAAGACCATAGGG+TGG + chr8_3:23397354-23397373 Msa1282670:intron 55.0%
GCGAGAGAAGACCATAGGGT+GGG + chr8_3:23397355-23397374 Msa1282670:intron 55.0%
! GCGCGAGGAAAGGCATAGGA+TGG - chr8_3:23396028-23396047 None:intergenic 60.0%
! GGGCGCGCGAGGAAAGGCAT+AGG - chr8_3:23396032-23396051 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 23395648 23398165 23395648 ID=Msa1282670;Name=Msa1282670
chr8_3 mRNA 23395648 23398165 23395648 ID=Msa1282670-mRNA-1;Parent=Msa1282670;Name=Msa1282670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=57|1|0.66|1|1|1|3|0|176
chr8_3 exon 23395648 23395965 23395648 ID=Msa1282670-mRNA-1:exon:8333;Parent=Msa1282670-mRNA-1
chr8_3 exon 23397496 23397657 23397496 ID=Msa1282670-mRNA-1:exon:8334;Parent=Msa1282670-mRNA-1
chr8_3 exon 23398058 23398165 23398058 ID=Msa1282670-mRNA-1:exon:8335;Parent=Msa1282670-mRNA-1
chr8_3 five_prime_UTR 23395648 23395704 23395648 ID=Msa1282670-mRNA-1:five_prime_utr;Parent=Msa1282670-mRNA-1
chr8_3 CDS 23395705 23395965 23395705 ID=Msa1282670-mRNA-1:cds;Parent=Msa1282670-mRNA-1
chr8_3 CDS 23397496 23397657 23397496 ID=Msa1282670-mRNA-1:cds;Parent=Msa1282670-mRNA-1
chr8_3 CDS 23398058 23398165 23398058 ID=Msa1282670-mRNA-1:cds;Parent=Msa1282670-mRNA-1
Gene Sequence

>Msa1282670

ATGAAAAGGATGGAGAAGATAAACATAAAGCAAGTAAGATGCCAATCAAAGATATTGGGAACAATTTTGACAGTAGCTGGTGCAATGTTAATGACATTATATAAAGGTCCTATTGTGGAGATGGTATGGGCCAAAAATAGACATCCTCAAAATGAAACACATGAAACAACAACCACAGGATCTTCTGAAAGAGATTGGATTTTAGGGTGCACTTTTCTTATCATTGCCACCTTTGCTTGGGCTTCACTCTTTGTTTTGCAAGCAAAAGTTATAGAGACGTACAAGCATCATCAACCAAGTCTTACTTCACTTGTGGTCTTTATTGGTACTCTTCAAGCTATTGCTGTTACTTTTGTGGCTGAGCATGATCCTTCTGTATGGAGGATTGGTTGGGATATGAGTTTACTTGCTTCAGCCTATGCTGGAATTGTGACCTCAAGCTTGGCATACTATGTACAAGGGCTAGTGATTAGGAAGAAAGGACCTGTCTTTGCAACTGCCTTTAGCCCACTTAAGAGAAATGGAATATGA
Protein sequence

>Msa1282670

MKRMEKINIKQVRCQSKILGTILTVAGAMLMTLYKGPIVEMVWAKNRHPQNETHETTTTGSSERDWILGCTFLIIATFAWASLFVLQAKVIETYKHHQPSLTSLVVFIGTLQAIAVTFVAEHDPSVWRIGWDMSLLASAYAGIVTSSLAYYVQGLVIRKKGPVFATAFSPLKRNGI*