Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286850 | XP_013445558.1 | 95.502 | 289 | 8 | 2 | 1 | 286 | 181 | 467 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286850 | sp|Q9FL69|AGD5_ARATH | 46.075 | 293 | 131 | 11 | 11 | 285 | 199 | 482 | 3.20e-49 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286850 | A0A072TPZ0 | 95.502 | 289 | 8 | 2 | 1 | 286 | 181 | 467 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001420 | Msa1286850 | -0.807168 | 5.765582e-50 | -8.615850e-47 |
| Msa0001540 | Msa1286850 | -0.800845 | 1.190701e-48 | -8.615850e-47 |
| Msa0024070 | Msa1286850 | -0.803527 | 3.340620e-49 | -8.615850e-47 |
| Msa0027090 | Msa1286850 | -0.819934 | 8.949571e-53 | -8.615850e-47 |
| Msa0033970 | Msa1286850 | 0.800425 | 1.449890e-48 | -8.615850e-47 |
| Msa0046800 | Msa1286850 | -0.804004 | 2.660284e-49 | -8.615850e-47 |
| Msa0056910 | Msa1286850 | 0.801133 | 1.039396e-48 | -8.615850e-47 |
| Msa0057340 | Msa1286850 | -0.800321 | 1.522728e-48 | -8.615850e-47 |
| Msa0060720 | Msa1286850 | -0.808615 | 2.838390e-50 | -8.615850e-47 |
| Msa0081400 | Msa1286850 | -0.819568 | 1.084927e-52 | -8.615850e-47 |
| Msa0081920 | Msa1286850 | 0.826506 | 2.613364e-54 | -8.615850e-47 |
| Msa0089700 | Msa1286850 | -0.813036 | 3.136127e-51 | -8.615850e-47 |
| Msa0606180 | Msa1286850 | -0.818340 | 2.063003e-52 | -8.615850e-47 |
| Msa0606230 | Msa1286850 | -0.804120 | 2.515440e-49 | -8.615850e-47 |
| Msa0606260 | Msa1286850 | -0.833732 | 4.504538e-56 | -8.615850e-47 |
| Msa0619450 | Msa1286850 | -0.832841 | 7.508543e-56 | -8.615850e-47 |
| Msa0619530 | Msa1286850 | -0.823255 | 1.528101e-53 | -8.615850e-47 |
| Msa0619960 | Msa1286850 | -0.803253 | 3.807684e-49 | -8.615850e-47 |
| Msa0620050 | Msa1286850 | -0.813845 | 2.082809e-51 | -8.615850e-47 |
| Msa0621870 | Msa1286850 | -0.802942 | 4.416258e-49 | -8.615850e-47 |
| Msa0623470 | Msa1286850 | -0.832235 | 1.061099e-55 | -8.615850e-47 |
| Msa0624700 | Msa1286850 | -0.830531 | 2.786453e-55 | -8.615850e-47 |
| Msa0633070 | Msa1286850 | 0.806258 | 8.977746e-50 | -8.615850e-47 |
| Msa0644340 | Msa1286850 | 0.808269 | 3.364899e-50 | -8.615850e-47 |
| Msa0645040 | Msa1286850 | -0.800319 | 1.523627e-48 | -8.615850e-47 |
| Msa0651000 | Msa1286850 | -0.809573 | 1.770326e-50 | -8.615850e-47 |
| Msa0651120 | Msa1286850 | -0.814475 | 1.512227e-51 | -8.615850e-47 |
| Msa0652360 | Msa1286850 | -0.818137 | 2.292796e-52 | -8.615850e-47 |
| Msa0659580 | Msa1286850 | -0.832245 | 1.055025e-55 | -8.615850e-47 |
| Msa0683610 | Msa1286850 | -0.809030 | 2.314804e-50 | -8.615850e-47 |
| Msa0693050 | Msa1286850 | -0.803782 | 2.958267e-49 | -8.615850e-47 |
| Msa0693150 | Msa1286850 | -0.812952 | 3.272353e-51 | -8.615850e-47 |
| Msa0695470 | Msa1286850 | -0.805586 | 1.242529e-49 | -8.615850e-47 |
| Msa0706450 | Msa1286850 | -0.815524 | 8.847988e-52 | -8.615850e-47 |
| Msa0706490 | Msa1286850 | -0.822218 | 2.664028e-53 | -8.615850e-47 |
| Msa0724120 | Msa1286850 | -0.834643 | 2.662237e-56 | -8.615850e-47 |
| Msa0729130 | Msa1286850 | -0.840412 | 8.832916e-58 | -8.615850e-47 |
| Msa0748890 | Msa1286850 | -0.807665 | 4.524815e-50 | -8.615850e-47 |
| Msa0788490 | Msa1286850 | -0.832358 | 9.892213e-56 | -8.615850e-47 |
| Msa0790380 | Msa1286850 | -0.809877 | 1.522394e-50 | -8.615850e-47 |
| Msa0796840 | Msa1286850 | -0.812413 | 4.293806e-51 | -8.615850e-47 |
| Msa0816390 | Msa1286850 | -0.801787 | 7.637101e-49 | -8.615850e-47 |
| Msa0823760 | Msa1286850 | -0.809548 | 1.791661e-50 | -8.615850e-47 |
| Msa0841570 | Msa1286850 | -0.806938 | 6.450908e-50 | -8.615850e-47 |
| Msa0123960 | Msa1286850 | -0.813286 | 2.764846e-51 | -8.615850e-47 |
| Msa0128030 | Msa1286850 | 0.809127 | 2.206444e-50 | -8.615850e-47 |
| Msa0141770 | Msa1286850 | -0.846062 | 2.750295e-59 | -8.615850e-47 |
| Msa0145590 | Msa1286850 | -0.800900 | 1.160074e-48 | -8.615850e-47 |
| Msa0151780 | Msa1286850 | -0.802054 | 6.730923e-49 | -8.615850e-47 |
| Msa0162170 | Msa1286850 | -0.805103 | 1.569082e-49 | -8.615850e-47 |
| Msa0181380 | Msa1286850 | -0.800811 | 1.209889e-48 | -8.615850e-47 |
| Msa0195810 | Msa1286850 | -0.811207 | 7.856037e-51 | -8.615850e-47 |
| Msa1225280 | Msa1286850 | -0.836183 | 1.086723e-56 | -8.615850e-47 |
| Msa1244940 | Msa1286850 | -0.811110 | 8.246297e-51 | -8.615850e-47 |
| Msa1250500 | Msa1286850 | -0.830847 | 2.331701e-55 | -8.615850e-47 |
| Msa1264670 | Msa1286850 | -0.814949 | 1.187034e-51 | -8.615850e-47 |
| Msa1267560 | Msa1286850 | -0.837379 | 5.382176e-57 | -8.615850e-47 |
| Msa1269550 | Msa1286850 | -0.834772 | 2.470598e-56 | -8.615850e-47 |
| Msa1286850 | Msa1295200 | 0.943167 | 1.959256e-102 | -8.615850e-47 |
| Msa1286850 | Msa1297490 | -0.806997 | 6.267575e-50 | -8.615850e-47 |
| Msa1286850 | Msa1297500 | -0.830410 | 2.983699e-55 | -8.615850e-47 |
| Msa1286850 | Msa1297550 | -0.803161 | 3.978687e-49 | -8.615850e-47 |
| Msa1286850 | Msa1297560 | -0.825805 | 3.835738e-54 | -8.615850e-47 |
| Msa1286850 | Msa1324940 | -0.809192 | 2.136943e-50 | -8.615850e-47 |
| Msa1286850 | Msa1325260 | -0.809007 | 2.341205e-50 | -8.615850e-47 |
| Msa1286850 | Msa1331490 | -0.801026 | 1.093072e-48 | -8.615850e-47 |
| Msa1286850 | Msa1337950 | -0.808968 | 2.386017e-50 | -8.615850e-47 |
| Msa1286850 | Msa1350130 | -0.810069 | 1.384553e-50 | -8.615850e-47 |
| Msa1286850 | Msa1350610 | -0.833926 | 4.028280e-56 | -8.615850e-47 |
| Msa1286850 | Msa1376560 | -0.801308 | 9.572874e-49 | -8.615850e-47 |
| Msa1286850 | Msa1388010 | -0.805625 | 1.219307e-49 | -8.615850e-47 |
| Msa1286850 | Msa1400830 | -0.821660 | 3.588507e-53 | -8.615850e-47 |
| Msa1286850 | Msa1403590 | -0.811022 | 8.616611e-51 | -8.615850e-47 |
| Msa1286850 | Msa1410360 | -0.820366 | 7.124228e-53 | -8.615850e-47 |
| Msa1286850 | Msa1414280 | -0.807999 | 3.842394e-50 | -8.615850e-47 |
| Msa1286850 | Msa1426880 | -0.831355 | 1.749907e-55 | -8.615850e-47 |
| Msa1286850 | Msa1429390 | -0.807792 | 4.251802e-50 | -8.615850e-47 |
| Msa1286850 | Msa1443280 | -0.811856 | 5.678732e-51 | -8.615850e-47 |
| Msa1286850 | Msa1444750 | -0.807948 | 3.938363e-50 | -8.615850e-47 |
| Msa1286850 | Msa1455560 | -0.813482 | 2.503027e-51 | -8.615850e-47 |
| Msa0365110 | Msa1286850 | -0.833546 | 5.011571e-56 | -8.615850e-47 |
| Msa0369770 | Msa1286850 | -0.814209 | 1.731289e-51 | -8.615850e-47 |
| Msa0383110 | Msa1286850 | -0.802584 | 5.234725e-49 | -8.615850e-47 |
| Msa0404840 | Msa1286850 | -0.801285 | 9.676710e-49 | -8.615850e-47 |
| Msa0409300 | Msa1286850 | 0.838564 | 2.668142e-57 | -8.615850e-47 |
| Msa0412470 | Msa1286850 | -0.866030 | 3.839304e-65 | -8.615850e-47 |
| Msa0415860 | Msa1286850 | -0.813339 | 2.690655e-51 | -8.615850e-47 |
| Msa0417140 | Msa1286850 | -0.807138 | 5.851187e-50 | -8.615850e-47 |
| Msa0429490 | Msa1286850 | -0.831187 | 1.923751e-55 | -8.615850e-47 |
| Msa0429560 | Msa1286850 | -0.850034 | 2.204066e-60 | -8.615850e-47 |
| Msa0436310 | Msa1286850 | -0.809764 | 1.610312e-50 | -8.615850e-47 |
| Msa0436430 | Msa1286850 | -0.801743 | 7.797880e-49 | -8.615850e-47 |
| Msa0443820 | Msa1286850 | 0.802271 | 6.071567e-49 | -8.615850e-47 |
| Msa0463980 | Msa1286850 | -0.819265 | 1.271487e-52 | -8.615850e-47 |
| Msa0474290 | Msa1286850 | -0.829474 | 5.044341e-55 | -8.615850e-47 |
| Msa1054620 | Msa1286850 | -0.824531 | 7.673704e-54 | -8.615850e-47 |
| Msa1076120 | Msa1286850 | -0.810217 | 1.286114e-50 | -8.615850e-47 |
| Msa0255770 | Msa1286850 | -0.813851 | 2.076464e-51 | -8.615850e-47 |
| Msa0270230 | Msa1286850 | -0.810922 | 9.060643e-51 | -8.615850e-47 |
| Msa0296490 | Msa1286850 | -0.835045 | 2.108450e-56 | -8.615850e-47 |
| Msa0307820 | Msa1286850 | -0.806569 | 7.719368e-50 | -8.615850e-47 |
| Msa0315720 | Msa1286850 | -0.806146 | 9.479327e-50 | -8.615850e-47 |
| Msa0335740 | Msa1286850 | -0.816869 | 4.427889e-52 | -8.615850e-47 |
| Msa1129540 | Msa1286850 | 0.834953 | 2.223663e-56 | -8.615850e-47 |
| Msa1144470 | Msa1286850 | -0.805757 | 1.144156e-49 | -8.615850e-47 |
| Msa1163130 | Msa1286850 | -0.807442 | 5.045655e-50 | -8.615850e-47 |
| Msa1163230 | Msa1286850 | -0.809821 | 1.565743e-50 | -8.615850e-47 |
| Msa1177960 | Msa1286850 | -0.814522 | 1.476315e-51 | -8.615850e-47 |
| Msa1190670 | Msa1286850 | -0.806576 | 7.692923e-50 | -8.615850e-47 |
| Msa1218310 | Msa1286850 | -0.804136 | 2.497314e-49 | -8.615850e-47 |
| Msa1218350 | Msa1286850 | -0.805501 | 1.295009e-49 | -8.615850e-47 |
| Msa1218740 | Msa1286850 | -0.841749 | 3.933414e-58 | -8.615850e-47 |
| Msa0486200 | Msa1286850 | -0.800088 | 1.698338e-48 | -8.615850e-47 |
| Msa0486240 | Msa1286850 | -0.814438 | 1.540689e-51 | -8.615850e-47 |
| Msa0497680 | Msa1286850 | 0.801875 | 7.325304e-49 | -8.615850e-47 |
| Msa0503220 | Msa1286850 | 0.860569 | 1.884777e-63 | -8.615850e-47 |
| Msa0509530 | Msa1286850 | -0.815823 | 7.586815e-52 | -8.615850e-47 |
| Msa0515730 | Msa1286850 | -0.834307 | 3.232741e-56 | -8.615850e-47 |
| Msa0518720 | Msa1286850 | -0.827846 | 1.248730e-54 | -8.615850e-47 |
| Msa0524570 | Msa1286850 | -0.802108 | 6.560521e-49 | -8.615850e-47 |
| Msa0550820 | Msa1286850 | -0.820106 | 8.171513e-53 | -8.615850e-47 |
| Msa0550840 | Msa1286850 | -0.804588 | 2.010072e-49 | -8.615850e-47 |
| Msa0550890 | Msa1286850 | -0.802584 | 5.234275e-49 | -8.615850e-47 |
| Msa0562040 | Msa1286850 | -0.805198 | 1.498992e-49 | -8.615850e-47 |
| Msa0866320 | Msa1286850 | -0.826958 | 2.038549e-54 | -8.615850e-47 |
| Msa0879820 | Msa1286850 | -0.818951 | 1.499538e-52 | -8.615850e-47 |
| Msa0893390 | Msa1286850 | -0.803607 | 3.216374e-49 | -8.615850e-47 |
| Msa0921200 | Msa1286850 | -0.802910 | 4.482136e-49 | -8.615850e-47 |
| Msa0933320 | Msa1286850 | -0.805584 | 1.244042e-49 | -8.615850e-47 |
| Msa0971100 | Msa1286850 | -0.802264 | 6.092634e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286850 | MtrunA17_Chr8g0360731 | 95.502 | 289 | 8 | 2 | 1 | 286 | 181 | 467 | 0.0 | 547 |
| Msa1286850 | MtrunA17_Chr2g0318391 | 64.014 | 289 | 93 | 6 | 1 | 285 | 192 | 473 | 6.18e-103 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1286850 | AT5G54310.1 | 46.075 | 293 | 131 | 11 | 11 | 285 | 199 | 482 | 3.26e-50 | 172 |
Find 92 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTCCTTATACATATTC+TGG | 0.174982 | 8_3:+35663741 | Msa1286850:three_prime_UTR |
| TGTACTCTCGACCGATTTCC+TGG | 0.205445 | 8_3:-35662289 | None:intergenic |
| CCGCAAGTTGCGCCAGTTAA+TGG | 0.208305 | 8_3:+35663331 | Msa1286850:CDS |
| CCTTTCCCTTGACTCATCCT+TGG | 0.291802 | 8_3:+35663565 | Msa1286850:three_prime_UTR |
| ACGGGCATTACTCCTGGAAT+TGG | 0.314592 | 8_3:-35662848 | None:intergenic |
| AGTCAAGGGAAAGGTGAAAA+AGG | 0.328429 | 8_3:-35663556 | None:intergenic |
| CTTTCCCTTGACTCATCCTT+GGG | 0.330265 | 8_3:+35663566 | Msa1286850:three_prime_UTR |
| GTTGTCGCTGTGCCATTAAC+TGG | 0.343122 | 8_3:-35663343 | None:intergenic |
| CCAACATTCCTTTCCAAAGT+TGG | 0.356202 | 8_3:+35662810 | Msa1286850:CDS |
| GCTGCTGCTGCAAAATCTGC+TGG | 0.359251 | 8_3:+35662746 | Msa1286850:CDS |
| AGTAATGCCCGTGGGTGGTC+AGG | 0.360119 | 8_3:+35662859 | Msa1286850:CDS |
| CGTAGTCCAGAATATGTATA+AGG | 0.365289 | 8_3:-35663747 | None:intergenic |
| CTGCTGACGATGATAACAAC+TGG | 0.390704 | 8_3:+35661013 | Msa1286850:CDS |
| GAAAACTGACCCCAGGAAAT+CGG | 0.390927 | 8_3:+35662278 | Msa1286850:CDS |
| TGTGTAGTGTTTGTCGATAC+CGG | 0.405690 | 8_3:-35663394 | None:intergenic |
| ATATTAAATAAAAGCCAATC+AGG | 0.406627 | 8_3:-35663470 | None:intergenic |
| CCTCAATTCCAGAGGTAGGC+TGG | 0.409988 | 8_3:-35662314 | None:intergenic |
| TATTCTGGACTACGGGTGTT+AGG | 0.411505 | 8_3:+35663756 | Msa1286850:three_prime_UTR |
| TATGGATGATCCAAATGAAA+AGG | 0.416593 | 8_3:+35660969 | Msa1286850:CDS |
| TCCGTCGCAAAGTCAACTTT+TGG | 0.418709 | 8_3:-35660928 | None:intergenic |
| GCTGCAAGCTACCCAATTCC+AGG | 0.421145 | 8_3:+35662836 | Msa1286850:CDS |
| CCACCCACGGGCATTACTCC+TGG | 0.430142 | 8_3:-35662854 | None:intergenic |
| AGCTTGCAGCTGGCCAACTT+TGG | 0.431420 | 8_3:-35662823 | None:intergenic |
| CCATAGACAACATGTCAAAA+AGG | 0.442474 | 8_3:-35660951 | None:intergenic |
| TCAACAACAGTTGGCTATGC+TGG | 0.447756 | 8_3:+35662688 | Msa1286850:CDS |
| GTACTCTCGACCGATTTCCT+GGG | 0.462466 | 8_3:-35662288 | None:intergenic |
| AGACTAGTGGCGTACCTAGA+TGG | 0.463412 | 8_3:-35663044 | None:intergenic |
| CTGCTGCAAAATCTGCTGGT+GGG | 0.464657 | 8_3:+35662750 | Msa1286850:CDS |
| AATGTTTGCGAAACCCTGAT+TGG | 0.467969 | 8_3:+35663456 | Msa1286850:exon |
| CGGGCATTACTCCTGGAATT+GGG | 0.471834 | 8_3:-35662847 | None:intergenic |
| AAACATTCCTTGTGTTAATG+AGG | 0.473328 | 8_3:-35663440 | None:intergenic |
| ACATCAGCATATTGAGAAAG+TGG | 0.473639 | 8_3:+35660840 | Msa1286850:CDS |
| ATGTATAAGGAAGGAAATAC+AGG | 0.479914 | 8_3:-35663734 | None:intergenic |
| GCTGCTGCAAAATCTGCTGG+TGG | 0.481042 | 8_3:+35662749 | Msa1286850:CDS |
| AGTACACCCCAGCCTACCTC+TGG | 0.482189 | 8_3:+35662306 | Msa1286850:CDS |
| CCAGGTTGCTGTACATTAGC+AGG | 0.486353 | 8_3:-35662785 | None:intergenic |
| AATTAGAGGACGAATCGAAC+TGG | 0.490372 | 8_3:-35663616 | None:intergenic |
| CCAACTTTGGAAAGGAATGT+TGG | 0.491986 | 8_3:-35662810 | None:intergenic |
| CCAGCCTACCTCTGGAATTG+AGG | 0.492503 | 8_3:+35662314 | Msa1286850:CDS |
| CTTATACATATTCTGGACTA+CGG | 0.493043 | 8_3:+35663748 | Msa1286850:three_prime_UTR |
| CTCAATTCCAGAGGTAGGCT+GGG | 0.494670 | 8_3:-35662313 | None:intergenic |
| TGCTATGCATCAACAACAGT+TGG | 0.495669 | 8_3:+35662679 | Msa1286850:CDS |
| TGGCTTAGTAGCTCTACAAA+TGG | 0.499521 | 8_3:-35663596 | None:intergenic |
| CAGTTCAGTATCCACCATCT+AGG | 0.500344 | 8_3:+35663030 | Msa1286850:CDS |
| GGAATTGGGTAGCTTGCAGC+TGG | 0.500912 | 8_3:-35662833 | None:intergenic |
| TGCTGCAAAATCTGCTGGTG+GGG | 0.503930 | 8_3:+35662751 | Msa1286850:CDS |
| TGGTATGTATGACCCACAAA+GGG | 0.506779 | 8_3:-35663498 | None:intergenic |
| CAATTCTCCCTGACCACCCA+CGG | 0.508449 | 8_3:-35662867 | None:intergenic |
| ATCGACAAACACTACACAAA+CGG | 0.512264 | 8_3:+35663399 | Msa1286850:CDS |
| ATATGCTGATGTTTAGCCAC+TGG | 0.517255 | 8_3:-35660829 | None:intergenic |
| TACTGAACTGAGCTCACCGC+TGG | 0.520904 | 8_3:-35663017 | None:intergenic |
| ATGGATGATCCAAATGAAAA+GGG | 0.524780 | 8_3:+35660970 | Msa1286850:CDS |
| TATTGAGAAAGTGGAACCTC+TGG | 0.525851 | 8_3:+35660849 | Msa1286850:CDS |
| CCTGCTAATGTACAGCAACC+TGG | 0.526340 | 8_3:+35662785 | Msa1286850:CDS |
| ATTGCTTCATTTGTATCGAT+AGG | 0.527327 | 8_3:+35663671 | Msa1286850:three_prime_UTR |
| CCATTAACTGGCGCAACTTG+CGG | 0.528352 | 8_3:-35663331 | None:intergenic |
| GATGTTTCAGCTTGCACTTG+TGG | 0.530155 | 8_3:-35660874 | None:intergenic |
| TGATTGAGGTTTACTTGCTA+CGG | 0.534731 | 8_3:-35663365 | None:intergenic |
| GCTTGCACTTGTGGCACCAG+AGG | 0.537743 | 8_3:-35660865 | None:intergenic |
| TTATACATATTCTGGACTAC+GGG | 0.538210 | 8_3:+35663749 | Msa1286850:three_prime_UTR |
| GACGATGATAACAACTGGGC+AGG | 0.544541 | 8_3:+35661018 | Msa1286850:CDS |
| GATACCGGAGTTGCTGATTG+AGG | 0.545397 | 8_3:-35663379 | None:intergenic |
| GTAATGCCCGTGGGTGGTCA+GGG | 0.549952 | 8_3:+35662860 | Msa1286850:CDS |
| AGAATTGCAGAAAATTATGC+AGG | 0.550290 | 8_3:+35662883 | Msa1286850:CDS |
| TACAAATGGTTTACAACCCA+AGG | 0.551590 | 8_3:-35663582 | None:intergenic |
| TGTTGTTGATGCATAGCAAA+TGG | 0.556232 | 8_3:-35662674 | None:intergenic |
| TGAGCTCACCGCTGGATGAG+TGG | 0.562556 | 8_3:-35663009 | None:intergenic |
| GTCCAGAATATGTATAAGGA+AGG | 0.562929 | 8_3:-35663743 | None:intergenic |
| TGGAAAGGAATGTTGGAACC+AGG | 0.563056 | 8_3:-35662803 | None:intergenic |
| GCAGCTGGCCAACTTTGGAA+AGG | 0.567381 | 8_3:-35662818 | None:intergenic |
| AATTCTCCCTGACCACCCAC+GGG | 0.570940 | 8_3:-35662866 | None:intergenic |
| ACAGCAACAGTCTCTTCTGA+TGG | 0.586759 | 8_3:+35662712 | Msa1286850:CDS |
| TAAACCTCAATCAGCAACTC+CGG | 0.598628 | 8_3:+35663375 | Msa1286850:CDS |
| AGATCCTCAATTCCAGAGGT+AGG | 0.599401 | 8_3:-35662318 | None:intergenic |
| ATGGTATGTATGACCCACAA+AGG | 0.599857 | 8_3:-35663499 | None:intergenic |
| TATTAAATAAAAGCCAATCA+GGG | 0.602573 | 8_3:-35663469 | None:intergenic |
| TCCAAAAGTTGACTTTGCGA+CGG | 0.606093 | 8_3:+35660927 | Msa1286850:CDS |
| TACAACCCAAGGATGAGTCA+AGG | 0.608459 | 8_3:-35663571 | None:intergenic |
| TCAATTCCAGAGGTAGGCTG+GGG | 0.609487 | 8_3:-35662312 | None:intergenic |
| ACAACCCAAGGATGAGTCAA+GGG | 0.618423 | 8_3:-35663570 | None:intergenic |
| TTTGTGGGTCATACATACCA+TGG | 0.629710 | 8_3:+35663501 | Msa1286850:three_prime_UTR |
| CAGCCGAGAAAACTGACCCC+AGG | 0.631124 | 8_3:+35662271 | Msa1286850:CDS |
| CCAAGGATGAGTCAAGGGAA+AGG | 0.632708 | 8_3:-35663565 | None:intergenic |
| TACTCTCGACCGATTTCCTG+GGG | 0.637706 | 8_3:-35662287 | None:intergenic |
| TGCTGACGATGATAACAACT+GGG | 0.640607 | 8_3:+35661014 | Msa1286850:CDS |
| CTAGTGGCGTACCTAGATGG+TGG | 0.652267 | 8_3:-35663041 | None:intergenic |
| TCTAAAACAGGTAACTCCAG+TGG | 0.660587 | 8_3:+35660813 | None:intergenic |
| AATTCCAGGAGTAATGCCCG+TGG | 0.673377 | 8_3:+35662850 | Msa1286850:CDS |
| ATTCCAGGAGTAATGCCCGT+GGG | 0.678335 | 8_3:+35662851 | Msa1286850:CDS |
| AAACAGATCCTCAATTCCAG+AGG | 0.685682 | 8_3:-35662322 | None:intergenic |
| CATGACATCCACTCATCCAG+CGG | 0.704013 | 8_3:+35663001 | Msa1286850:CDS |
| GGTATGTATGACCCACAAAG+GGG | 0.738633 | 8_3:-35663497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAATATTTTAAATAT+TGG | + | chr8_3:35663832-35663851 | Msa1286850:three_prime_UTR | 0.0% |
| !!! | TCTTATATTTTAAACTTATT+TGG | + | chr8_3:35661294-35661313 | Msa1286850:intron | 10.0% |
| !! | TATATAAATTTACTATTAAC+GGG | - | chr8_3:35661483-35661502 | None:intergenic | 10.0% |
| !!! | TTATAGAATTTTTTGTTTAA+TGG | + | chr8_3:35661886-35661905 | Msa1286850:intron | 10.0% |
| !!! | TATAGAATTTTTTGTTTAAT+GGG | + | chr8_3:35661887-35661906 | Msa1286850:intron | 10.0% |
| !!! | AATTTAGTGTTATTTTTATA+TGG | + | chr8_3:35663710-35663729 | Msa1286850:three_prime_UTR | 10.0% |
| !!! | ACTTTTCTTAAATAATTTGT+TGG | + | chr8_3:35661684-35661703 | Msa1286850:intron | 15.0% |
| !! | AAACTTCATATAAAAATTAG+AGG | - | chr8_3:35663633-35663652 | None:intergenic | 15.0% |
| !! | ATTATAATATGAGCTAGAAT+AGG | + | chr8_3:35661137-35661156 | Msa1286850:intron | 20.0% |
| !!! | GTTTAAAATATAAGATACTG+CGG | - | chr8_3:35661289-35661308 | None:intergenic | 20.0% |
| !!! | AAATGAAGAATGTCTAAAAT+AGG | + | chr8_3:35661725-35661744 | Msa1286850:intron | 20.0% |
| !! | TGTTAGTACAAAATGAAATT+AGG | + | chr8_3:35661758-35661777 | Msa1286850:intron | 20.0% |
| !! | ATTATCTATAACTAACTTAG+TGG | + | chr8_3:35661820-35661839 | Msa1286850:intron | 20.0% |
| !!! | TTTTGTATATGTTGTAATGA+AGG | + | chr8_3:35661860-35661879 | Msa1286850:intron | 20.0% |
| !! | TTTGTATATGTTGTAATGAA+GGG | + | chr8_3:35661861-35661880 | Msa1286850:intron | 20.0% |
| !! | TAGACAATAGTTTATAGATA+TGG | + | chr8_3:35662131-35662150 | Msa1286850:intron | 20.0% |
| !! | AGACAATAGTTTATAGATAT+GGG | + | chr8_3:35662132-35662151 | Msa1286850:intron | 20.0% |
| !!! | TCATTTTTTACATCTTTTTG+TGG | - | chr8_3:35662390-35662409 | None:intergenic | 20.0% |
| !! | TGAATAATCTTATGTAAAGT+TGG | + | chr8_3:35663151-35663170 | Msa1286850:intron | 20.0% |
| !! | TATTAAATAAAAGCCAATCA+GGG | - | chr8_3:35663472-35663491 | None:intergenic | 20.0% |
| !! | ATATTAAATAAAAGCCAATC+AGG | - | chr8_3:35663473-35663492 | None:intergenic | 20.0% |
| !!! | TAAATTTAACTAGTTTTCCA+TGG | - | chr8_3:35663521-35663540 | None:intergenic | 20.0% |
| !!! | TGAAGTTTTTTATCTTCTTT+CGG | + | chr8_3:35663645-35663664 | Msa1286850:three_prime_UTR | 20.0% |
| !! | GTTCAATTATGTATAAAAAC+TGG | + | chr8_3:35663805-35663824 | Msa1286850:three_prime_UTR | 20.0% |
| ! | AGAATAGGTATATGAAGTTA+TGG | + | chr8_3:35661152-35661171 | Msa1286850:intron | 25.0% |
| ! | GAATAGGTATATGAAGTTAT+GGG | + | chr8_3:35661153-35661172 | Msa1286850:intron | 25.0% |
| ! | TATTGAAGTGATTAGAGATT+GGG | - | chr8_3:35661323-35661342 | None:intergenic | 25.0% |
| ! | ATATTGAAGTGATTAGAGAT+TGG | - | chr8_3:35661324-35661343 | None:intergenic | 25.0% |
| ! | CCAAAGTTCTATAATTATAC+AGG | - | chr8_3:35661371-35661390 | None:intergenic | 25.0% |
| ! | CCTGTATAATTATAGAACTT+TGG | + | chr8_3:35661368-35661387 | Msa1286850:intron | 25.0% |
| ! | TCTTTAAGTGATTAGAGATT+GGG | - | chr8_3:35661397-35661416 | None:intergenic | 25.0% |
| ! | TTCTTTAAGTGATTAGAGAT+TGG | - | chr8_3:35661398-35661417 | None:intergenic | 25.0% |
| !!! | CTATAAGATACTGCTATTTT+AGG | - | chr8_3:35661452-35661471 | None:intergenic | 25.0% |
| ! | TAGTTATAGATAATGATCGA+AGG | - | chr8_3:35661814-35661833 | None:intergenic | 25.0% |
| ! | CATATACAAAATCTTACTGA+TGG | - | chr8_3:35661851-35661870 | None:intergenic | 25.0% |
| !! | TTGATGCTACATTTTCAAAA+TGG | + | chr8_3:35661921-35661940 | Msa1286850:intron | 25.0% |
| !! | ATTTTCAAAATGGAAAAGAG+AGG | + | chr8_3:35661931-35661950 | Msa1286850:intron | 25.0% |
| ! | ATAGTTTATAGATATGGGAA+TGG | + | chr8_3:35662137-35662156 | Msa1286850:intron | 25.0% |
| ! | TAGTTTATAGATATGGGAAT+GGG | + | chr8_3:35662138-35662157 | Msa1286850:intron | 25.0% |
| !!! | TATTATGAGCCTTTTTGAAA+AGG | + | chr8_3:35662410-35662429 | Msa1286850:CDS | 25.0% |
| !! | TTGTACTAACCTTTTCAAAA+AGG | - | chr8_3:35662422-35662441 | None:intergenic | 25.0% |
| !! | ACCTTTTATATGACTTGATA+TGG | + | chr8_3:35662461-35662480 | Msa1286850:intron | 25.0% |
| ! | ACCATATCAAGTCATATAAA+AGG | - | chr8_3:35662465-35662484 | None:intergenic | 25.0% |
| !! | ATTTTACCTTACACAGTAAA+TGG | + | chr8_3:35662622-35662641 | Msa1286850:intron | 25.0% |
| !! | TTTTACCTTACACAGTAAAT+GGG | + | chr8_3:35662623-35662642 | Msa1286850:intron | 25.0% |
| !!! | TTTAAGTATTGATAGCTGAT+AGG | + | chr8_3:35663087-35663106 | Msa1286850:intron | 25.0% |
| !!! | TTAAGTATTGATAGCTGATA+GGG | + | chr8_3:35663088-35663107 | Msa1286850:intron | 25.0% |
| ! | TGTAAAAAAACTGCAACAAT+GGG | - | chr8_3:35663308-35663327 | None:intergenic | 25.0% |
| ! | TTGTAAAAAAACTGCAACAA+TGG | - | chr8_3:35663309-35663328 | None:intergenic | 25.0% |
| !! | TTTAATATTTTTCCCCTTTG+TGG | + | chr8_3:35663485-35663504 | Msa1286850:three_prime_UTR | 25.0% |
| !! | TTAATATTTTTCCCCTTTGT+GGG | + | chr8_3:35663486-35663505 | Msa1286850:three_prime_UTR | 25.0% |
| !!! | GAAGTTTTTTATCTTCTTTC+GGG | + | chr8_3:35663646-35663665 | Msa1286850:three_prime_UTR | 25.0% |
| !! | CAAGTTTTTATACATCATAG+TGG | - | chr8_3:35663786-35663805 | None:intergenic | 25.0% |
| TATGGATGATCCAAATGAAA+AGG | + | chr8_3:35660969-35660988 | Msa1286850:CDS | 30.0% | |
| ATGGATGATCCAAATGAAAA+GGG | + | chr8_3:35660970-35660989 | Msa1286850:CDS | 30.0% | |
| CAGCAGAAATGTTCTTTAAT+TGG | - | chr8_3:35661239-35661258 | None:intergenic | 30.0% | |
| ATTTCTGCTGATGAAAAATC+AGG | + | chr8_3:35661249-35661268 | Msa1286850:intron | 30.0% | |
| TTATACAGGAAAGTGATTAG+AGG | - | chr8_3:35661357-35661376 | None:intergenic | 30.0% | |
| TATTCACACTCGACATTATT+CGG | - | chr8_3:35661608-35661627 | None:intergenic | 30.0% | |
| TCCATTTCTCATATCTAACT+CGG | - | chr8_3:35662004-35662023 | None:intergenic | 30.0% | |
| ! | CATTTTATGATGTGCAGTAT+AGG | + | chr8_3:35662052-35662071 | Msa1286850:intron | 30.0% |
| GGTGTCAATCAATTGTAATT+TGG | + | chr8_3:35662081-35662100 | Msa1286850:intron | 30.0% | |
| TCTGAAAACACTATTGTGAT+GGG | - | chr8_3:35662167-35662186 | None:intergenic | 30.0% | |
| !!! | GTTTTCAGACATTGTTTTTG+AGG | + | chr8_3:35662178-35662197 | Msa1286850:intron | 30.0% |
| !!! | AGACATTGTTTTTGAGGATT+TGG | + | chr8_3:35662184-35662203 | Msa1286850:intron | 30.0% |
| !!! | ACAGATAGCTTGTTTTGTTT+TGG | + | chr8_3:35662587-35662606 | Msa1286850:intron | 30.0% |
| TATATCCCATTTACTGTGTA+AGG | - | chr8_3:35662631-35662650 | None:intergenic | 30.0% | |
| AGAATTGCAGAAAATTATGC+AGG | + | chr8_3:35662883-35662902 | Msa1286850:CDS | 30.0% | |
| TCATTAAACTAAAGCTCACA+TGG | - | chr8_3:35662916-35662935 | None:intergenic | 30.0% | |
| ! | TTGTTTAACTTCTTCCTTCT+TGG | + | chr8_3:35662966-35662985 | Msa1286850:intron | 30.0% |
| ! | GATTTTTCCTCATTAACACA+AGG | + | chr8_3:35663433-35663452 | Msa1286850:CDS | 30.0% |
| AAACATTCCTTGTGTTAATG+AGG | - | chr8_3:35663443-35663462 | None:intergenic | 30.0% | |
| ! | ATTGCTTCATTTGTATCGAT+AGG | + | chr8_3:35663671-35663690 | Msa1286850:three_prime_UTR | 30.0% |
| ATGTATAAGGAAGGAAATAC+AGG | - | chr8_3:35663737-35663756 | None:intergenic | 30.0% | |
| TTCCTTCCTTATACATATTC+TGG | + | chr8_3:35663741-35663760 | Msa1286850:three_prime_UTR | 30.0% | |
| CTTATACATATTCTGGACTA+CGG | + | chr8_3:35663748-35663767 | Msa1286850:three_prime_UTR | 30.0% | |
| TTATACATATTCTGGACTAC+GGG | + | chr8_3:35663749-35663768 | Msa1286850:three_prime_UTR | 30.0% | |
| ACATCAGCATATTGAGAAAG+TGG | + | chr8_3:35660840-35660859 | Msa1286850:CDS | 35.0% | |
| CCATAGACAACATGTCAAAA+AGG | - | chr8_3:35660954-35660973 | None:intergenic | 35.0% | |
| ! | CCTTTTTGACATGTTGTCTA+TGG | + | chr8_3:35660951-35660970 | Msa1286850:CDS | 35.0% |
| ! | AGGTTTTCAGTGTATGTTCT+CGG | + | chr8_3:35661038-35661057 | Msa1286850:intron | 35.0% |
| TAGTGATGTCTTTGAATGAG+AGG | + | chr8_3:35661197-35661216 | Msa1286850:intron | 35.0% | |
| AGTTACTGTACGAGAAAACT+TGG | + | chr8_3:35661636-35661655 | Msa1286850:intron | 35.0% | |
| CGAGAAAACTTGGAAGAAAA+TGG | + | chr8_3:35661646-35661665 | Msa1286850:intron | 35.0% | |
| AAAATGATGCGATGTGATCA+TGG | - | chr8_3:35662038-35662057 | None:intergenic | 35.0% | |
| CTGAAAACACTATTGTGATG+GGG | - | chr8_3:35662166-35662185 | None:intergenic | 35.0% | |
| GTCTGAAAACACTATTGTGA+TGG | - | chr8_3:35662168-35662187 | None:intergenic | 35.0% | |
| !!! | GGTTTTTCAAGAGAAGAACT+TGG | - | chr8_3:35662369-35662388 | None:intergenic | 35.0% |
| AAGAACAACTTCACTCGAAA+TGG | - | chr8_3:35662520-35662539 | None:intergenic | 35.0% | |
| TGTTGTTGATGCATAGCAAA+TGG | - | chr8_3:35662677-35662696 | None:intergenic | 35.0% | |
| TGTTTATTGTCTGACCAAGA+AGG | - | chr8_3:35662983-35663002 | None:intergenic | 35.0% | |
| CCTTTAAATACACAGACTAG+TGG | - | chr8_3:35663060-35663079 | None:intergenic | 35.0% | |
| ! | CCACTAGTCTGTGTATTTAA+AGG | + | chr8_3:35663057-35663076 | Msa1286850:intron | 35.0% |
| GAAGTACAAGGATTAACACT+GGG | - | chr8_3:35663203-35663222 | None:intergenic | 35.0% | |
| TGAAGTACAAGGATTAACAC+TGG | - | chr8_3:35663204-35663223 | None:intergenic | 35.0% | |
| CCATGACTAAATGAAGTACA+AGG | - | chr8_3:35663215-35663234 | None:intergenic | 35.0% | |
| CCTTGTACTTCATTTAGTCA+TGG | + | chr8_3:35663212-35663231 | Msa1286850:intron | 35.0% | |
| CAACTTGGTTAAACAAAAGG+AGG | - | chr8_3:35663285-35663304 | None:intergenic | 35.0% | |
| ! | TGATTGAGGTTTACTTGCTA+CGG | - | chr8_3:35663368-35663387 | None:intergenic | 35.0% |
| ATCGACAAACACTACACAAA+CGG | + | chr8_3:35663399-35663418 | Msa1286850:CDS | 35.0% | |
| TACAAATGGTTTACAACCCA+AGG | - | chr8_3:35663585-35663604 | None:intergenic | 35.0% | |
| GTCCAGAATATGTATAAGGA+AGG | - | chr8_3:35663746-35663765 | None:intergenic | 35.0% | |
| CGTAGTCCAGAATATGTATA+AGG | - | chr8_3:35663750-35663769 | None:intergenic | 35.0% | |
| ATATGCTGATGTTTAGCCAC+TGG | - | chr8_3:35660832-35660851 | None:intergenic | 40.0% | |
| TATTGAGAAAGTGGAACCTC+TGG | + | chr8_3:35660849-35660868 | Msa1286850:CDS | 40.0% | |
| ! | TCGCAAAGTCAACTTTTGGA+GGG | - | chr8_3:35660927-35660946 | None:intergenic | 40.0% |
| ! | TCCAAAAGTTGACTTTGCGA+CGG | + | chr8_3:35660927-35660946 | Msa1286850:CDS | 40.0% |
| TGCTGACGATGATAACAACT+GGG | + | chr8_3:35661014-35661033 | Msa1286850:CDS | 40.0% | |
| TGGAAAAGAGAGGAGACAAA+AGG | + | chr8_3:35661941-35661960 | Msa1286850:intron | 40.0% | |
| GGAAAAGAGAGGAGACAAAA+GGG | + | chr8_3:35661942-35661961 | Msa1286850:intron | 40.0% | |
| GCCGAGTTAGATATGAGAAA+TGG | + | chr8_3:35662000-35662019 | Msa1286850:intron | 40.0% | |
| GATGTGCAGTATAGGTGATT+TGG | + | chr8_3:35662060-35662079 | Msa1286850:intron | 40.0% | |
| AAACAGATCCTCAATTCCAG+AGG | - | chr8_3:35662325-35662344 | None:intergenic | 40.0% | |
| TGCTATGCATCAACAACAGT+TGG | + | chr8_3:35662679-35662698 | Msa1286850:CDS | 40.0% | |
| ! | CCAACTTTGGAAAGGAATGT+TGG | - | chr8_3:35662813-35662832 | None:intergenic | 40.0% |
| CCAACATTCCTTTCCAAAGT+TGG | + | chr8_3:35662810-35662829 | Msa1286850:CDS | 40.0% | |
| CTGATAGGGATTTGATCTGA+TGG | + | chr8_3:35663102-35663121 | Msa1286850:intron | 40.0% | |
| GGGCAACTTGGTTAAACAAA+AGG | - | chr8_3:35663288-35663307 | None:intergenic | 40.0% | |
| TAAACCTCAATCAGCAACTC+CGG | + | chr8_3:35663375-35663394 | Msa1286850:CDS | 40.0% | |
| TGTGTAGTGTTTGTCGATAC+CGG | - | chr8_3:35663397-35663416 | None:intergenic | 40.0% | |
| AATGTTTGCGAAACCCTGAT+TGG | + | chr8_3:35663456-35663475 | Msa1286850:exon | 40.0% | |
| TGGTATGTATGACCCACAAA+GGG | - | chr8_3:35663501-35663520 | None:intergenic | 40.0% | |
| ATGGTATGTATGACCCACAA+AGG | - | chr8_3:35663502-35663521 | None:intergenic | 40.0% | |
| TTTGTGGGTCATACATACCA+TGG | + | chr8_3:35663501-35663520 | Msa1286850:three_prime_UTR | 40.0% | |
| AGTCAAGGGAAAGGTGAAAA+AGG | - | chr8_3:35663559-35663578 | None:intergenic | 40.0% | |
| ! | TGGCTTAGTAGCTCTACAAA+TGG | - | chr8_3:35663599-35663618 | None:intergenic | 40.0% |
| AATTAGAGGACGAATCGAAC+TGG | - | chr8_3:35663619-35663638 | None:intergenic | 40.0% | |
| GATGTTTCAGCTTGCACTTG+TGG | - | chr8_3:35660877-35660896 | None:intergenic | 45.0% | |
| !! | GCAAAGTCAACTTTTGGAGG+GGG | - | chr8_3:35660925-35660944 | None:intergenic | 45.0% |
| !! | CGCAAAGTCAACTTTTGGAG+GGG | - | chr8_3:35660926-35660945 | None:intergenic | 45.0% |
| ! | GTCGCAAAGTCAACTTTTGG+AGG | - | chr8_3:35660928-35660947 | None:intergenic | 45.0% |
| ! | TCCGTCGCAAAGTCAACTTT+TGG | - | chr8_3:35660931-35660950 | None:intergenic | 45.0% |
| CTGCTGACGATGATAACAAC+TGG | + | chr8_3:35661013-35661032 | Msa1286850:CDS | 45.0% | |
| AGATGATGATCCGCATTTCG+CGG | + | chr8_3:35661083-35661102 | Msa1286850:intron | 45.0% | |
| TAAATTCCAGCCGCGAAATG+CGG | - | chr8_3:35661096-35661115 | None:intergenic | 45.0% | |
| AAGAGAGGAGACAAAAGGGT+AGG | + | chr8_3:35661946-35661965 | Msa1286850:intron | 45.0% | |
| AGGAGACAAAAGGGTAGGTA+AGG | + | chr8_3:35661951-35661970 | Msa1286850:intron | 45.0% | |
| GGAGACAAAAGGGTAGGTAA+GGG | + | chr8_3:35661952-35661971 | Msa1286850:intron | 45.0% | |
| ! | TTTCCTGGGGTCAGTTTTCT+CGG | - | chr8_3:35662277-35662296 | None:intergenic | 45.0% |
| GAAAACTGACCCCAGGAAAT+CGG | + | chr8_3:35662278-35662297 | Msa1286850:CDS | 45.0% | |
| AGATCCTCAATTCCAGAGGT+AGG | - | chr8_3:35662321-35662340 | None:intergenic | 45.0% | |
| GCAGCTAAATTCACTCGTAC+TGG | - | chr8_3:35662557-35662576 | None:intergenic | 45.0% | |
| TCAACAACAGTTGGCTATGC+TGG | + | chr8_3:35662688-35662707 | Msa1286850:CDS | 45.0% | |
| ACAGCAACAGTCTCTTCTGA+TGG | + | chr8_3:35662712-35662731 | Msa1286850:CDS | 45.0% | |
| TGGAAAGGAATGTTGGAACC+AGG | - | chr8_3:35662806-35662825 | None:intergenic | 45.0% | |
| CAGTTCAGTATCCACCATCT+AGG | + | chr8_3:35663030-35663049 | Msa1286850:CDS | 45.0% | |
| AACTGCAACAATGGGCAACT+TGG | - | chr8_3:35663300-35663319 | None:intergenic | 45.0% | |
| GGTATGTATGACCCACAAAG+GGG | - | chr8_3:35663500-35663519 | None:intergenic | 45.0% | |
| CTTTCCCTTGACTCATCCTT+GGG | + | chr8_3:35663566-35663585 | Msa1286850:three_prime_UTR | 45.0% | |
| ACAACCCAAGGATGAGTCAA+GGG | - | chr8_3:35663573-35663592 | None:intergenic | 45.0% | |
| TACAACCCAAGGATGAGTCA+AGG | - | chr8_3:35663574-35663593 | None:intergenic | 45.0% | |
| TATTCTGGACTACGGGTGTT+AGG | + | chr8_3:35663756-35663775 | Msa1286850:three_prime_UTR | 45.0% | |
| !! | ATATATAAATTTACTATTAA+CGG | - | chr8_3:35661484-35661503 | None:intergenic | 5.0% |
| ! | GCGTCAGAGCCCTTTTCATT+TGG | - | chr8_3:35660982-35661001 | None:intergenic | 50.0% |
| GACGATGATAACAACTGGGC+AGG | + | chr8_3:35661018-35661037 | Msa1286850:CDS | 50.0% | |
| AGGTAAGGGATGAGAGAGGT+TGG | + | chr8_3:35661966-35661985 | Msa1286850:intron | 50.0% | |
| GGTAAGGGATGAGAGAGGTT+GGG | + | chr8_3:35661967-35661986 | Msa1286850:intron | 50.0% | |
| GTAAGGGATGAGAGAGGTTG+GGG | + | chr8_3:35661968-35661987 | Msa1286850:intron | 50.0% | |
| ! | TACTCTCGACCGATTTCCTG+GGG | - | chr8_3:35662290-35662309 | None:intergenic | 50.0% |
| ! | GTACTCTCGACCGATTTCCT+GGG | - | chr8_3:35662291-35662310 | None:intergenic | 50.0% |
| ! | TGTACTCTCGACCGATTTCC+TGG | - | chr8_3:35662292-35662311 | None:intergenic | 50.0% |
| TCAATTCCAGAGGTAGGCTG+GGG | - | chr8_3:35662315-35662334 | None:intergenic | 50.0% | |
| CTCAATTCCAGAGGTAGGCT+GGG | - | chr8_3:35662316-35662335 | None:intergenic | 50.0% | |
| CTGCTGCAAAATCTGCTGGT+GGG | + | chr8_3:35662750-35662769 | Msa1286850:CDS | 50.0% | |
| TGCTGCAAAATCTGCTGGTG+GGG | + | chr8_3:35662751-35662770 | Msa1286850:CDS | 50.0% | |
| CCAGGTTGCTGTACATTAGC+AGG | - | chr8_3:35662788-35662807 | None:intergenic | 50.0% | |
| CCTGCTAATGTACAGCAACC+TGG | + | chr8_3:35662785-35662804 | Msa1286850:CDS | 50.0% | |
| CGGGCATTACTCCTGGAATT+GGG | - | chr8_3:35662850-35662869 | None:intergenic | 50.0% | |
| ACGGGCATTACTCCTGGAAT+TGG | - | chr8_3:35662851-35662870 | None:intergenic | 50.0% | |
| AATTCCAGGAGTAATGCCCG+TGG | + | chr8_3:35662850-35662869 | Msa1286850:CDS | 50.0% | |
| ATTCCAGGAGTAATGCCCGT+GGG | + | chr8_3:35662851-35662870 | Msa1286850:CDS | 50.0% | |
| CATGACATCCACTCATCCAG+CGG | + | chr8_3:35663001-35663020 | Msa1286850:CDS | 50.0% | |
| AGACTAGTGGCGTACCTAGA+TGG | - | chr8_3:35663047-35663066 | None:intergenic | 50.0% | |
| CCATTAACTGGCGCAACTTG+CGG | - | chr8_3:35663334-35663353 | None:intergenic | 50.0% | |
| ! | GTTGTCGCTGTGCCATTAAC+TGG | - | chr8_3:35663346-35663365 | None:intergenic | 50.0% |
| ! | GATACCGGAGTTGCTGATTG+AGG | - | chr8_3:35663382-35663401 | None:intergenic | 50.0% |
| CCAAGGATGAGTCAAGGGAA+AGG | - | chr8_3:35663568-35663587 | None:intergenic | 50.0% | |
| CCTTTCCCTTGACTCATCCT+TGG | + | chr8_3:35663565-35663584 | Msa1286850:three_prime_UTR | 50.0% | |
| GGGTAGGTAAGGGATGAGAG+AGG | + | chr8_3:35661962-35661981 | Msa1286850:intron | 55.0% | |
| CCTCAATTCCAGAGGTAGGC+TGG | - | chr8_3:35662317-35662336 | None:intergenic | 55.0% | |
| !! | CCAGCCTACCTCTGGAATTG+AGG | + | chr8_3:35662314-35662333 | Msa1286850:CDS | 55.0% |
| GCTGCTGCTGCAAAATCTGC+TGG | + | chr8_3:35662746-35662765 | Msa1286850:CDS | 55.0% | |
| GCTGCTGCAAAATCTGCTGG+TGG | + | chr8_3:35662749-35662768 | Msa1286850:CDS | 55.0% | |
| ! | GCAGCTGGCCAACTTTGGAA+AGG | - | chr8_3:35662821-35662840 | None:intergenic | 55.0% |
| AGCTTGCAGCTGGCCAACTT+TGG | - | chr8_3:35662826-35662845 | None:intergenic | 55.0% | |
| ! | GGAATTGGGTAGCTTGCAGC+TGG | - | chr8_3:35662836-35662855 | None:intergenic | 55.0% |
| GCTGCAAGCTACCCAATTCC+AGG | + | chr8_3:35662836-35662855 | Msa1286850:CDS | 55.0% | |
| AATTCTCCCTGACCACCCAC+GGG | - | chr8_3:35662869-35662888 | None:intergenic | 55.0% | |
| CAATTCTCCCTGACCACCCA+CGG | - | chr8_3:35662870-35662889 | None:intergenic | 55.0% | |
| TACTGAACTGAGCTCACCGC+TGG | - | chr8_3:35663020-35663039 | None:intergenic | 55.0% | |
| CTAGTGGCGTACCTAGATGG+TGG | - | chr8_3:35663044-35663063 | None:intergenic | 55.0% | |
| CCGCAAGTTGCGCCAGTTAA+TGG | + | chr8_3:35663331-35663350 | Msa1286850:CDS | 55.0% | |
| GCTTGCACTTGTGGCACCAG+AGG | - | chr8_3:35660868-35660887 | None:intergenic | 60.0% | |
| GATGATCCGCATTTCGCGGC+TGG | + | chr8_3:35661087-35661106 | Msa1286850:intron | 60.0% | |
| CAGCCGAGAAAACTGACCCC+AGG | + | chr8_3:35662271-35662290 | Msa1286850:CDS | 60.0% | |
| AGTACACCCCAGCCTACCTC+TGG | + | chr8_3:35662306-35662325 | Msa1286850:CDS | 60.0% | |
| AGTAATGCCCGTGGGTGGTC+AGG | + | chr8_3:35662859-35662878 | Msa1286850:CDS | 60.0% | |
| GTAATGCCCGTGGGTGGTCA+GGG | + | chr8_3:35662860-35662879 | Msa1286850:CDS | 60.0% | |
| TGAGCTCACCGCTGGATGAG+TGG | - | chr8_3:35663012-35663031 | None:intergenic | 60.0% | |
| CCACCCACGGGCATTACTCC+TGG | - | chr8_3:35662857-35662876 | None:intergenic | 65.0% | |
| CCAGGAGTAATGCCCGTGGG+TGG | + | chr8_3:35662854-35662873 | Msa1286850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 35660823 | 35663876 | 35660823 | ID=Msa1286850;Name=Msa1286850 |
| chr8_3 | mRNA | 35660823 | 35663876 | 35660823 | ID=Msa1286850-mRNA-1;Parent=Msa1286850;Name=Msa1286850-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.75|0.8|1|1|1|5|402|286 |
| chr8_3 | exon | 35660823 | 35661039 | 35660823 | ID=Msa1286850-mRNA-1:exon:10490;Parent=Msa1286850-mRNA-1 |
| chr8_3 | exon | 35662253 | 35662431 | 35662253 | ID=Msa1286850-mRNA-1:exon:10491;Parent=Msa1286850-mRNA-1 |
| chr8_3 | exon | 35662656 | 35662904 | 35662656 | ID=Msa1286850-mRNA-1:exon:10492;Parent=Msa1286850-mRNA-1 |
| chr8_3 | exon | 35662993 | 35663051 | 35662993 | ID=Msa1286850-mRNA-1:exon:10493;Parent=Msa1286850-mRNA-1 |
| chr8_3 | exon | 35663318 | 35663876 | 35663318 | ID=Msa1286850-mRNA-1:exon:10494;Parent=Msa1286850-mRNA-1 |
| chr8_3 | CDS | 35660823 | 35661039 | 35660823 | ID=Msa1286850-mRNA-1:cds;Parent=Msa1286850-mRNA-1 |
| chr8_3 | CDS | 35662253 | 35662431 | 35662253 | ID=Msa1286850-mRNA-1:cds;Parent=Msa1286850-mRNA-1 |
| chr8_3 | CDS | 35662656 | 35662904 | 35662656 | ID=Msa1286850-mRNA-1:cds;Parent=Msa1286850-mRNA-1 |
| chr8_3 | CDS | 35662993 | 35663051 | 35662993 | ID=Msa1286850-mRNA-1:cds;Parent=Msa1286850-mRNA-1 |
| chr8_3 | CDS | 35663318 | 35663474 | 35663318 | ID=Msa1286850-mRNA-1:cds;Parent=Msa1286850-mRNA-1 |
| chr8_3 | three_prime_UTR | 35663475 | 35663876 | 35663475 | ID=Msa1286850-mRNA-1:three_prime_utr;Parent=Msa1286850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
