AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0027090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027090 MtrunA17_Chr1g0183021 92.176 409 23 3 1 406 64 466 0.0 738
Msa0027090 MtrunA17_Chr7g0262551 73.626 364 96 0 43 406 1 364 0.0 567
Msa0027090 MtrunA17_Chr7g0262571 62.785 395 140 2 14 405 28 418 0.0 512
Msa0027090 MtrunA17_Chr1g0183031 65.833 360 123 0 47 406 9 368 1.91e-176 496
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0027090 AT4G28706.3 67.042 355 117 0 51 405 48 402 0.0 512
Msa0027090 AT4G28706.1 67.042 355 117 0 51 405 46 400 0.0 512
Msa0027090 AT4G28706.4 67.135 356 116 1 51 405 48 403 0.0 511
Msa0027090 AT4G28706.2 67.135 356 116 1 51 405 48 403 0.0 511
Msa0027090 AT5G43910.2 54.670 364 159 3 44 405 4 363 8.71e-140 403
Msa0027090 AT5G43910.4 54.769 325 141 3 44 366 4 324 2.02e-122 358
Msa0027090 AT5G43910.1 53.957 278 126 2 44 319 4 281 3.02e-104 310
Msa0027090 AT5G43910.5 54.745 274 122 2 44 315 4 277 3.51e-104 310
Msa0027090 AT5G43910.3 54.745 274 122 2 44 315 4 277 7.03e-104 309

Find 127 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCACTTCACTCACTTTA+TGG 0.132342 1_1:-51362519 Msa0027090:five_prime_UTR
TTACGTTGGGTAACCTTAAA+AGG 0.186047 1_1:+51358351 None:intergenic
ATTTACCCTCTTAGATGTTT+TGG 0.230744 1_1:-51356903 Msa0027090:three_prime_UTR
AAAATTTGTGGCTGTAACTT+TGG 0.249227 1_1:-51358330 Msa0027090:CDS
ATCAGTCACCGTCGATTTCT+TGG 0.299106 1_1:-51362054 Msa0027090:CDS
GGTGCCGGGGATGCATTTAT+TGG 0.310291 1_1:-51357538 Msa0027090:CDS
TTGACTGAGTTGTTTATTGA+TGG 0.314095 1_1:-51356943 Msa0027090:three_prime_UTR
CCAGTCAGTGGCAAAATTAA+AGG 0.324818 1_1:-51357644 Msa0027090:intron
GGTGGATGTAGACAACTTAT+TGG 0.326212 1_1:-51358158 Msa0027090:CDS
CAACATAATCAGCTAATTTC+AGG 0.326463 1_1:+51358929 None:intergenic
TTAACCTGCCTTGCTCGTTT+AGG 0.328379 1_1:-51361635 Msa0027090:CDS
AAACACAAGGCTCGTTTCTA+AGG 0.332845 1_1:-51361609 Msa0027090:intron
CCCTTGTATTGGCTCAATAC+TGG 0.333218 1_1:+51356984 None:intergenic
AACTCGATTCTGAAAGATCT+TGG 0.350613 1_1:+51359792 None:intergenic
GAAGGAATAGGGACGGTTAT+CGG 0.357570 1_1:-51357619 Msa0027090:CDS
AAATTTGTGGCTGTAACTTT+GGG 0.365260 1_1:-51358329 Msa0027090:CDS
TTTATTGGATCTGTGATCTA+TGG 0.367712 1_1:-51357523 Msa0027090:intron
TCATCTAATATGCCCCTGCC+TGG 0.371108 1_1:+51361165 None:intergenic
CTGGAAAATCTACTGAATAA+AGG 0.373453 1_1:+51357003 None:intergenic
AAATTAAAGGCAGAAGGAAT+AGG 0.388757 1_1:-51357631 Msa0027090:CDS
ACTCGATTCTGAAAGATCTT+GGG 0.390681 1_1:+51359793 None:intergenic
GAAAGATCTTGGGGTATCAT+TGG 0.390891 1_1:+51359803 None:intergenic
AATCAGAACAACCGCTTTGA+AGG 0.391087 1_1:-51361997 Msa0027090:intron
ATCGAGTTTGTTATCTGCAT+TGG 0.395357 1_1:-51359777 Msa0027090:CDS
CCTTTCTGCATCAATTAAGA+TGG 0.396655 1_1:+51358975 None:intergenic
TTTCAATGAAGTTTCAATCA+TGG 0.397353 1_1:-51356808 Msa0027090:three_prime_UTR
AAGAAACCAAAACATCTAAG+AGG 0.398040 1_1:+51356897 None:intergenic
GGTGCCAAGTGCAGAGATCT+AGG 0.414691 1_1:-51357070 Msa0027090:CDS
AAGGCAGGTTAAAGCATTGC+CGG 0.419139 1_1:+51361646 None:intergenic
AAGGAATAGGGACGGTTATC+GGG 0.427277 1_1:-51357618 Msa0027090:CDS
CGCACAACGGTGGCGCTTTG+AGG 0.441473 1_1:+51362177 None:intergenic
AGCTGAGAGCATTCCGCCCT+CGG 0.443652 1_1:-51357578 Msa0027090:CDS
GGTATCATTGGAGGATATCC+AGG 0.445056 1_1:+51359815 None:intergenic
GTTACCCAACGTAAAATTTG+TGG 0.460980 1_1:-51358342 Msa0027090:CDS
GCAGAGATTCGACATGGTTA+CGG 0.461264 1_1:+51362419 None:intergenic
AATTAAAGGCAGAAGGAATA+GGG 0.464539 1_1:-51357630 Msa0027090:CDS
AGGCGTGGGTCTGCGCGGTA+TGG 0.464792 1_1:+51357031 None:intergenic
GTGCTTATGCAGGTGGGTTG+CGG 0.466739 1_1:-51362077 Msa0027090:intron
CTTGTTGATACCACTGGTGC+CGG 0.467767 1_1:-51357553 Msa0027090:CDS
TCCACAATAATGTACGTAAA+CGG 0.467777 1_1:+51360633 None:intergenic
TCCAGTATTGAGCCAATACA+AGG 0.470329 1_1:-51356985 Msa0027090:three_prime_UTR
TTGCATTACCGATGATATGC+AGG 0.482989 1_1:+51358093 None:intergenic
ACTGAAGCCATCCCTTGTAT+TGG 0.483875 1_1:+51356973 None:intergenic
GGTTGAAATGAATGAATGAA+TGG 0.484791 1_1:+51362489 None:intergenic
TTGCGGATGACAGCCCAGGC+AGG 0.492500 1_1:-51361179 Msa0027090:CDS
TTGTTGATACCACTGGTGCC+GGG 0.498753 1_1:-51357552 Msa0027090:CDS
ATGAATGAATGAATGGTGAT+TGG 0.504020 1_1:+51362496 None:intergenic
TGCGGATGACAGCCCAGGCA+GGG 0.505235 1_1:-51361178 Msa0027090:CDS
TTATTTGCAGGTATCTAAAG+AGG 0.508769 1_1:-51360664 Msa0027090:intron
TAGACCTAAACGAGCAAGGC+AGG 0.509005 1_1:+51361631 None:intergenic
AGACAACTTATTGGAATCGC+TGG 0.516469 1_1:-51358149 Msa0027090:CDS
TCGGAGCTTGTTGATACCAC+TGG 0.518281 1_1:-51357559 Msa0027090:CDS
GCGGATGACAGCCCAGGCAG+GGG 0.519058 1_1:-51361177 Msa0027090:CDS
CATCTAATATGCCCCTGCCT+GGG 0.522457 1_1:+51361166 None:intergenic
TAGATTGCGGATGACAGCCC+AGG 0.525196 1_1:-51361183 Msa0027090:CDS
GCAAAGGGTAGCATTGTCTC+TGG 0.526457 1_1:+51357345 None:intergenic
CATTTATGTAAGAGAGAGGA+TGG 0.529081 1_1:-51356855 Msa0027090:three_prime_UTR
CTTTCTGCATCAATTAAGAT+GGG 0.529991 1_1:+51358976 None:intergenic
TCATCGCAGTAGAAATTTGA+AGG 0.531166 1_1:-51362223 Msa0027090:CDS
CTCGTTTAGGTCTAAACACA+AGG 0.531596 1_1:-51361622 Msa0027090:CDS
TAATTGATGCAGAAAGGCCA+AGG 0.534906 1_1:-51358969 Msa0027090:CDS
GTTCAAGGAGGTGGTAATGC+CGG 0.539538 1_1:-51361665 Msa0027090:CDS
AGATCATCTAACCCTTCCCT+TGG 0.542681 1_1:+51358952 None:intergenic
TGCTCCTAGATCTCTGCACT+TGG 0.543238 1_1:+51357066 None:intergenic
AACGGTGGCGCTTTGAGGAA+CGG 0.543705 1_1:+51362182 None:intergenic
CGAACTTGTATACATACCCC+TGG 0.546807 1_1:-51359833 Msa0027090:CDS
TCTACTGAATAAAGGACGCT+AGG 0.547805 1_1:+51357011 None:intergenic
ACATACCACATTAGCAGCAA+AGG 0.549212 1_1:+51357329 None:intergenic
AGTTTGTTATCTGCATTGGA+TGG 0.549990 1_1:-51359773 Msa0027090:CDS
CTCGATTCTGAAAGATCTTG+GGG 0.550007 1_1:+51359794 None:intergenic
GCTGTAACTTTGGGAAAAGA+TGG 0.551573 1_1:-51358320 Msa0027090:CDS
GGCGCTTTGAGGAACGGAGG+AGG 0.552389 1_1:+51362188 None:intergenic
GGAATCGCTGGAGTTAAGAA+AGG 0.553449 1_1:-51358137 Msa0027090:CDS
TTCACATTTATGTAAGAGAG+AGG 0.555722 1_1:-51356859 Msa0027090:three_prime_UTR
ACCGTTTACGTACATTATTG+TGG 0.557011 1_1:-51360634 Msa0027090:CDS
CCATCTTAATTGATGCAGAA+AGG 0.560154 1_1:-51358975 Msa0027090:CDS
AGGATAGAAACAAGCGCTCG+CGG 0.560505 1_1:+51358371 None:intergenic
CATACCACATTAGCAGCAAA+GGG 0.560550 1_1:+51357330 None:intergenic
AATACAAGGGATGGCTTCAG+TGG 0.561337 1_1:-51356971 Msa0027090:three_prime_UTR
GCTACCCTTTGCTGCTAATG+TGG 0.565502 1_1:-51357334 Msa0027090:intron
ACATCCACCTCTTCTGTGGT+AGG 0.565690 1_1:+51358172 None:intergenic
AGATCCAATAAATGCATCCC+CGG 0.570608 1_1:+51357534 None:intergenic
GTCTACATCCACCTCTTCTG+TGG 0.570769 1_1:+51358168 None:intergenic
AGAAACCAAAACATCTAAGA+GGG 0.573537 1_1:+51356898 None:intergenic
TGAATAAAGGACGCTAGGCG+TGG 0.574504 1_1:+51357016 None:intergenic
GTGGCAAAATTAAAGGCAGA+AGG 0.575500 1_1:-51357637 Msa0027090:CDS
TTGTTTAATTTCAGTTAACA+AGG 0.576890 1_1:-51362248 Msa0027090:intron
AGATCTTGGGGTATCATTGG+AGG 0.580008 1_1:+51359806 None:intergenic
ATGCAGAAAGGCCAAGGGAA+GGG 0.586552 1_1:-51358963 Msa0027090:CDS
ATACAAGGGATGGCTTCAGT+GGG 0.591668 1_1:-51356970 Msa0027090:three_prime_UTR
TATTGAGCCAATACAAGGGA+TGG 0.592143 1_1:-51356980 Msa0027090:three_prime_UTR
AAATGCATCCCCGGCACCAG+TGG 0.595424 1_1:+51357543 None:intergenic
AATTCCAACCTGCATATCAT+CGG 0.597038 1_1:-51358101 Msa0027090:intron
TGCTCTAGTTGTTGCCCACG+AGG 0.599306 1_1:-51359711 Msa0027090:intron
TTTATAGGTGATAACCTCGT+GGG 0.604370 1_1:+51359697 None:intergenic
GTGGTATCAACAAGCTCCGA+GGG 0.610523 1_1:+51357562 None:intergenic
TGTTTAGACCTAAACGAGCA+AGG 0.611501 1_1:+51361627 None:intergenic
TATTTGCAGGTATCTAAAGA+GGG 0.612549 1_1:-51360663 Msa0027090:intron
GAATAAAGGACGCTAGGCGT+GGG 0.613508 1_1:+51357017 None:intergenic
ATTACCGATGATATGCAGGT+TGG 0.615097 1_1:+51358097 None:intergenic
GATGCAGAAAGGCCAAGGGA+AGG 0.616991 1_1:-51358964 Msa0027090:CDS
TTAGATGAGCTACAGACTGA+TGG 0.621642 1_1:-51361150 Msa0027090:CDS
AGCAAGTCCTACCACAGAAG+AGG 0.623266 1_1:-51358179 Msa0027090:CDS
TTGCTGACAGGCATGGACAG+AGG 0.624956 1_1:-51358405 Msa0027090:intron
AAGTCCTACCACAGAAGAGG+TGG 0.625523 1_1:-51358176 Msa0027090:CDS
ATGCTCAGCTAAGTTTCCAA+AGG 0.628024 1_1:-51358905 Msa0027090:intron
GAGAGGGAAACGCACAACGG+TGG 0.647307 1_1:+51362167 None:intergenic
GTATCATTGGAGGATATCCA+GGG 0.655895 1_1:+51359816 None:intergenic
TGTTGATACCACTGGTGCCG+GGG 0.657221 1_1:-51357551 Msa0027090:CDS
TGGCTTAGGATAAGCAGCAA+CGG 0.657813 1_1:+51362028 None:intergenic
AAAGGCAGAAGGAATAGGGA+CGG 0.658683 1_1:-51357626 Msa0027090:CDS
TGAGCTACAGACTGATGGCG+TGG 0.660123 1_1:-51361145 Msa0027090:CDS
ACGCTAGGCGTGGGTCTGCG+CGG 0.665905 1_1:+51357026 None:intergenic
AATTGATGCAGAAAGGCCAA+GGG 0.667892 1_1:-51358968 Msa0027090:CDS
CTGCTCGAGAGAAGTGTCAG+TGG 0.668499 1_1:-51358290 Msa0027090:intron
TGGCCATAAAGTGAGTGAAG+TGG 0.672106 1_1:+51362516 None:intergenic
AACGGTAGCCAAGAAATCGA+CGG 0.675256 1_1:+51362046 None:intergenic
CCAGTATTGAGCCAATACAA+GGG 0.675756 1_1:-51356984 Msa0027090:three_prime_UTR
AAAAGTGCAGAGATTCGACA+TGG 0.688208 1_1:+51362413 None:intergenic
GTATCAACAAGCTCCGAGGG+CGG 0.694955 1_1:+51357565 None:intergenic
AGTGGTATCAACAAGCTCCG+AGG 0.709683 1_1:+51357561 None:intergenic
GGTGGCGCTTTGAGGAACGG+AGG 0.717893 1_1:+51362185 None:intergenic
TACAAGGGATGGCTTCAGTG+GGG 0.728644 1_1:-51356969 Msa0027090:three_prime_UTR
AAAGGAAGCAACCTTCAAAG+CGG 0.741809 1_1:+51361986 None:intergenic
GTTATCGGGAAACTATACAT+CGG 0.752848 1_1:-51357604 Msa0027090:CDS
TATCATTGGAGGATATCCAG+GGG 0.762329 1_1:+51359817 None:intergenic
AGAGATCTAGGAGCACGAAG+CGG 0.771967 1_1:-51357058 Msa0027090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATGTAAAATGTTTTTTTT+TGG - chr1_1:51357352-51357371 Msa0027090:CDS 10.0%
!!! AATTATTTAGTTTTAATTTC+TGG - chr1_1:51357691-51357710 Msa0027090:intron 10.0%
!! TTAAATAAACTGAATAAAAT+AGG - chr1_1:51357959-51357978 Msa0027090:intron 10.0%
!!! TATTAATACTTTTTTTTTTG+TGG - chr1_1:51358539-51358558 Msa0027090:intron 10.0%
!! TATTAGTATTAATAAAAAGT+TGG + chr1_1:51359678-51359697 None:intergenic 10.0%
!!! ATCTAAAATTCAAAAAATTA+GGG + chr1_1:51360710-51360729 None:intergenic 10.0%
!!! TATCTAAAATTCAAAAAATT+AGG + chr1_1:51360711-51360730 None:intergenic 10.0%
!!! ATTTTTTTCAGTAAAAAAAA+TGG + chr1_1:51360743-51360762 None:intergenic 10.0%
!!! AAATTTGATTTTTGTGTTTT+GGG + chr1_1:51356773-51356792 None:intergenic 15.0%
!!! TAATTAATTTTAATTCTCGA+TGG + chr1_1:51358484-51358503 None:intergenic 15.0%
!! GAGAATTAAAATTAATTAGT+GGG - chr1_1:51358486-51358505 Msa0027090:intron 15.0%
!! AGAATTAAAATTAATTAGTG+GGG - chr1_1:51358487-51358506 Msa0027090:intron 15.0%
!! AAGTATTAATAAAATAGTAG+AGG + chr1_1:51358530-51358549 None:intergenic 15.0%
!! AATTCTGATGTTAATTATAA+GGG - chr1_1:51359574-51359593 Msa0027090:intron 15.0%
!! GTAAGAAATATATAATACTA+TGG - chr1_1:51360386-51360405 Msa0027090:intron 15.0%
!!! ATCTTACATAATTGATATTT+TGG + chr1_1:51361398-51361417 None:intergenic 15.0%
!!! TTTGTTATATTTTTCTCTTA+TGG - chr1_1:51361750-51361769 Msa0027090:intron 15.0%
!!! GAAATTTGATTTTTGTGTTT+TGG + chr1_1:51356774-51356793 None:intergenic 20.0%
!!! TTGTTTAATTTCAGTTAACA+AGG - chr1_1:51356990-51357009 Msa0027090:three_prime_UTR 20.0%
!! CATAAAAAAACCTCAAAATT+TGG + chr1_1:51357120-51357139 None:intergenic 20.0%
!!! ATTATGCATTTGTAATTTTC+AGG - chr1_1:51357551-51357570 Msa0027090:CDS 20.0%
!!! ATATTTAATTGATAACCCTT+GGG + chr1_1:51358406-51358425 None:intergenic 20.0%
!! AATCGAAATGTAGTTAATTA+AGG - chr1_1:51358435-51358454 Msa0027090:intron 20.0%
!! CGAGAATTAAAATTAATTAG+TGG - chr1_1:51358485-51358504 Msa0027090:intron 20.0%
!! GAATTGCAAGTAAAATTTAT+AGG + chr1_1:51359559-51359578 None:intergenic 20.0%
!! CAATTCTGATGTTAATTATA+AGG - chr1_1:51359573-51359592 Msa0027090:intron 20.0%
!!! TTTGATTTCTAAATATGACT+GGG + chr1_1:51359600-51359619 None:intergenic 20.0%
!! ATGTTTATTTGATAAAATCC+TGG + chr1_1:51359627-51359646 None:intergenic 20.0%
!! ATCATGTAACAATTTCTTAT+AGG + chr1_1:51359959-51359978 None:intergenic 20.0%
!!! TTTTTGCATAATAAACTCAA+GGG + chr1_1:51360099-51360118 None:intergenic 20.0%
!!! TTATTTTCTTTTGCTTGTAA+AGG - chr1_1:51360148-51360167 Msa0027090:intron 20.0%
!! GTATATTAAAACATAGAGAA+TGG + chr1_1:51361277-51361296 None:intergenic 20.0%
!!! AAAAAGCTTATGCATTTTAA+TGG - chr1_1:51362133-51362152 Msa0027090:intron 20.0%
!!! AAAAGCTTATGCATTTTAAT+GGG - chr1_1:51362134-51362153 Msa0027090:intron 20.0%
!! GAAAGTAAAAATTATAAGCA+GGG + chr1_1:51362414-51362433 None:intergenic 20.0%
!! TGAAAGTAAAAATTATAAGC+AGG + chr1_1:51362415-51362434 None:intergenic 20.0%
! AAAAAAACCTCAAAATTTGG+CGG + chr1_1:51357117-51357136 None:intergenic 25.0%
!!! ATTTGTAATTTTCAGGTTCA+AGG - chr1_1:51357558-51357577 Msa0027090:CDS 25.0%
! TTTATAAGCACTTAAACAAG+TGG + chr1_1:51357755-51357774 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG - chr1_1:51357878-51357897 Msa0027090:intron 25.0%
!! TACATCTTTTATTGTGGTAA+TGG - chr1_1:51358117-51358136 Msa0027090:CDS 25.0%
!! GAAATTTGGTTTATTGCATT+TGG - chr1_1:51358189-51358208 Msa0027090:intron 25.0%
! AAATTATACTTCGAATCAGT+TGG + chr1_1:51358383-51358402 None:intergenic 25.0%
!! CATATTTAATTGATAACCCT+TGG + chr1_1:51358407-51358426 None:intergenic 25.0%
!!! AATGGTCATTTTCTTACATA+TGG - chr1_1:51358639-51358658 Msa0027090:intron 25.0%
! TGATCTAAATTTCAAAAGAG+AGG - chr1_1:51358697-51358716 Msa0027090:intron 25.0%
! GATCTAAATTTCAAAAGAGA+GGG - chr1_1:51358698-51358717 Msa0027090:intron 25.0%
! ATCTAAATTTCAAAAGAGAG+GGG - chr1_1:51358699-51358718 Msa0027090:intron 25.0%
! ACTTGAATCATTCTAAGTTA+AGG - chr1_1:51358974-51358993 Msa0027090:CDS 25.0%
! CTTGAATCATTCTAAGTTAA+GGG - chr1_1:51358975-51358994 Msa0027090:CDS 25.0%
! TTGAATCATTCTAAGTTAAG+GGG - chr1_1:51358976-51358995 Msa0027090:CDS 25.0%
!!! TATAAAGTGTTGTCAAACAA+AGG + chr1_1:51359124-51359143 None:intergenic 25.0%
! TTATACTAAATCGCATATCA+CGG - chr1_1:51359139-51359158 Msa0027090:intron 25.0%
! ACTCATATAGGATATATTGT+AGG + chr1_1:51359290-51359309 None:intergenic 25.0%
!! CTTTGATTTCTAAATATGAC+TGG + chr1_1:51359601-51359620 None:intergenic 25.0%
!! ATGTAATCTAAAATCCATAG+TGG - chr1_1:51359812-51359831 Msa0027090:CDS 25.0%
! AAGAAAAAGAACGAATGTTA+GGG + chr1_1:51359890-51359909 None:intergenic 25.0%
! AATTCTTCACCAAAAACATA+AGG + chr1_1:51359990-51360009 None:intergenic 25.0%
! GTGAAGAATTTCAAAATTCT+AGG - chr1_1:51360000-51360019 Msa0027090:intron 25.0%
!! TTCTAGGAAATTGAAATTAC+AGG - chr1_1:51360016-51360035 Msa0027090:intron 25.0%
! TCTAGGAAATTGAAATTACA+GGG - chr1_1:51360017-51360036 Msa0027090:intron 25.0%
!!! AAGGGAATGTAATTTTTTTG+AGG + chr1_1:51360081-51360100 None:intergenic 25.0%
!! GTTTTTGCATAATAAACTCA+AGG + chr1_1:51360100-51360119 None:intergenic 25.0%
! ATATGATGTCTTAAATGACT+TGG - chr1_1:51360515-51360534 Msa0027090:intron 25.0%
!!! AAGAAAAGACTAGTTTTTTG+TGG - chr1_1:51360543-51360562 Msa0027090:intron 25.0%
!! ACAACTTAACATGTATTTTG+GGG + chr1_1:51360575-51360594 None:intergenic 25.0%
!! CACAACTTAACATGTATTTT+GGG + chr1_1:51360576-51360595 None:intergenic 25.0%
!! TCACAACTTAACATGTATTT+TGG + chr1_1:51360577-51360596 None:intergenic 25.0%
!! AAGCTATATTCTTTTTGTTG+TGG - chr1_1:51360619-51360638 Msa0027090:intron 25.0%
!!! ATTATTTTTACTCTTCTCTG+TGG - chr1_1:51360761-51360780 Msa0027090:intron 25.0%
!!! TTATTTTTACTCTTCTCTGT+GGG - chr1_1:51360762-51360781 Msa0027090:intron 25.0%
!! TTTAATCATTTGACCTTTTC+TGG - chr1_1:51361035-51361054 Msa0027090:intron 25.0%
! CATCATTATACACTAACATA+TGG + chr1_1:51361980-51361999 None:intergenic 25.0%
! AATTTATGTATTGAACCTGT+TGG - chr1_1:51362090-51362109 Msa0027090:intron 25.0%
!!! AAAGCTTATGCATTTTAATG+GGG - chr1_1:51362135-51362154 Msa0027090:intron 25.0%
! TTTCAATGAAGTTTCAATCA+TGG - chr1_1:51362430-51362449 Msa0027090:exon 25.0%
ATGAATGAATGAATGGTGAT+TGG + chr1_1:51356745-51356764 None:intergenic 30.0%
GGTTGAAATGAATGAATGAA+TGG + chr1_1:51356752-51356771 None:intergenic 30.0%
AAAAAACCTCAAAATTTGGC+GGG + chr1_1:51357116-51357135 None:intergenic 30.0%
! GTTGTTCTGATTTTATCATC+TGG + chr1_1:51357233-51357252 None:intergenic 30.0%
AAGCTAGTATAGTGCATATT+TGG - chr1_1:51357293-51357312 Msa0027090:intron 30.0%
TTAAATAAGCAATGTCGAGA+GGG + chr1_1:51357673-51357692 None:intergenic 30.0%
ATTAAATAAGCAATGTCGAG+AGG + chr1_1:51357674-51357693 None:intergenic 30.0%
!! CTGGAAGTATTTAACAGTTT+AGG - chr1_1:51357710-51357729 Msa0027090:intron 30.0%
CACTTAAACAAGTGGTTTAT+CGG + chr1_1:51357747-51357766 None:intergenic 30.0%
! ACTCTTTTCATAGACTATTG+TGG - chr1_1:51357842-51357861 Msa0027090:intron 30.0%
ACAATGGTTTCAAAAAACTC+AGG + chr1_1:51357999-51358018 None:intergenic 30.0%
! GTGCATTTTACTAATGTGTT+TGG - chr1_1:51358025-51358044 Msa0027090:intron 30.0%
TCTTCATGAAGCTTGAAATT+TGG - chr1_1:51358175-51358194 Msa0027090:CDS 30.0%
TATTGTTGCCCATAACTAAA+AGG + chr1_1:51358248-51358267 None:intergenic 30.0%
AAAATACTGAGATTTGAGAG+TGG + chr1_1:51358346-51358365 None:intergenic 30.0%
ATTCGAAGTATAATTTCCCA+AGG - chr1_1:51358387-51358406 Msa0027090:CDS 30.0%
TTCGAAGTATAATTTCCCAA+GGG - chr1_1:51358388-51358407 Msa0027090:CDS 30.0%
! TAACTACATTTCGATTTGTC+TGG + chr1_1:51358431-51358450 None:intergenic 30.0%
AAAATTAATTAGTGGGGTTC+TGG - chr1_1:51358493-51358512 Msa0027090:intron 30.0%
AATAAAATAGTAGAGGCCAT+TGG + chr1_1:51358523-51358542 None:intergenic 30.0%
TTAGATACCTGCAAATAACA+GGG + chr1_1:51358572-51358591 None:intergenic 30.0%
TTTAGATACCTGCAAATAAC+AGG + chr1_1:51358573-51358592 None:intergenic 30.0%
TTATTTGCAGGTATCTAAAG+AGG - chr1_1:51358574-51358593 Msa0027090:intron 30.0%
TATTTGCAGGTATCTAAAGA+GGG - chr1_1:51358575-51358594 Msa0027090:intron 30.0%
TCCACAATAATGTACGTAAA+CGG + chr1_1:51358608-51358627 None:intergenic 30.0%
TCTAAATTTCAAAAGAGAGG+GGG - chr1_1:51358700-51358719 Msa0027090:intron 30.0%
TAATTCAGTGTTGTCAATTG+TGG - chr1_1:51359036-51359055 Msa0027090:intron 30.0%
AGTAGTTAGAATGAGTCAAA+GGG + chr1_1:51359371-51359390 None:intergenic 30.0%
AAGTAGTTAGAATGAGTCAA+AGG + chr1_1:51359372-51359391 None:intergenic 30.0%
!!! CTCATTCTAACTACTTTTTC+AGG - chr1_1:51359376-51359395 Msa0027090:intron 30.0%
!! GCAAGCATTGTATATTTTGA+CGG - chr1_1:51359489-51359508 Msa0027090:intron 30.0%
!!! CAAGCATTGTATATTTTGAC+GGG - chr1_1:51359490-51359509 Msa0027090:intron 30.0%
! ATTTAGAAATCAAAGCATCC+AGG - chr1_1:51359606-51359625 Msa0027090:intron 30.0%
GAAGAAAAAGAACGAATGTT+AGG + chr1_1:51359891-51359910 None:intergenic 30.0%
AATGCACTTAGCATACATAA+TGG + chr1_1:51359916-51359935 None:intergenic 30.0%
AAATGATTCATAAAACACCC+TGG + chr1_1:51360050-51360069 None:intergenic 30.0%
! TTTTCTTTTGCTTGTAAAGG+AGG - chr1_1:51360151-51360170 Msa0027090:intron 30.0%
CTTTCTGCATCAATTAAGAT+GGG + chr1_1:51360265-51360284 None:intergenic 30.0%
CAACATAATCAGCTAATTTC+AGG + chr1_1:51360312-51360331 None:intergenic 30.0%
AAAAACAATGCATTCACCTT+TGG + chr1_1:51360352-51360371 None:intergenic 30.0%
CATTTATGCACATGTAAACA+AGG + chr1_1:51360422-51360441 None:intergenic 30.0%
TAAATAGTACATTTACTGCC+TGG + chr1_1:51360484-51360503 None:intergenic 30.0%
! ACATATCGTTTTACCTTTTC+TGG - chr1_1:51360681-51360700 Msa0027090:intron 30.0%
!! TATTTTTACTCTTCTCTGTG+GGG - chr1_1:51360763-51360782 Msa0027090:intron 30.0%
!! TGCATTTGATGATGCTTAAA+AGG + chr1_1:51360796-51360815 None:intergenic 30.0%
AAAATTTGTGGCTGTAACTT+TGG - chr1_1:51360908-51360927 Msa0027090:intron 30.0%
AAATTTGTGGCTGTAACTTT+GGG - chr1_1:51360909-51360928 Msa0027090:intron 30.0%
GTATGTGTAGATATGATTGT+GGG - chr1_1:51360970-51360989 Msa0027090:intron 30.0%
!! CATCTGCTTTTAATGTAAAC+AGG - chr1_1:51361011-51361030 Msa0027090:intron 30.0%
TTAAAACATAGAGAATGGCA+GGG + chr1_1:51361272-51361291 None:intergenic 30.0%
ATTAAAACATAGAGAATGGC+AGG + chr1_1:51361273-51361292 None:intergenic 30.0%
!!! CTACAATGTTTGACCTTTTT+TGG - chr1_1:51361314-51361333 Msa0027090:intron 30.0%
ACACTGTATTTGTCCAAAAA+AGG + chr1_1:51361330-51361349 None:intergenic 30.0%
ATTAACGTCTAGTAGAGATT+AGG + chr1_1:51361357-51361376 None:intergenic 30.0%
!!! CATAATTGATATTTTGGCTC+AGG + chr1_1:51361392-51361411 None:intergenic 30.0%
AAATTAAAGGCAGAAGGAAT+AGG - chr1_1:51361607-51361626 Msa0027090:intron 30.0%
AATTAAAGGCAGAAGGAATA+GGG - chr1_1:51361608-51361627 Msa0027090:intron 30.0%
TTTATTGGATCTGTGATCTA+TGG - chr1_1:51361715-51361734 Msa0027090:intron 30.0%
TTTCTCTTATGGTCTTCAAT+AGG - chr1_1:51361761-51361780 Msa0027090:intron 30.0%
! ATAAGTTTGTTTGAGGTTAG+AGG + chr1_1:51362018-51362037 None:intergenic 30.0%
CTATACACACGATACAAATT+AGG + chr1_1:51362060-51362079 None:intergenic 30.0%
CTGGAAAATCTACTGAATAA+AGG + chr1_1:51362238-51362257 None:intergenic 30.0%
TTGACTGAGTTGTTTATTGA+TGG - chr1_1:51362295-51362314 Msa0027090:intron 30.0%
! ATTTACCCTCTTAGATGTTT+TGG - chr1_1:51362335-51362354 Msa0027090:intron 30.0%
AGAAACCAAAACATCTAAGA+GGG + chr1_1:51362343-51362362 None:intergenic 30.0%
AAGAAACCAAAACATCTAAG+AGG + chr1_1:51362344-51362363 None:intergenic 30.0%
TTCACATTTATGTAAGAGAG+AGG - chr1_1:51362379-51362398 Msa0027090:CDS 30.0%
TCATCGCAGTAGAAATTTGA+AGG - chr1_1:51357015-51357034 Msa0027090:CDS 35.0%
GAAAGAAAGAGAGAAAGAGA+GGG + chr1_1:51357090-51357109 None:intergenic 35.0%
TGAAAGAAAGAGAGAAAGAG+AGG + chr1_1:51357091-51357110 None:intergenic 35.0%
!! CTGATTTTATCATCTGGCTT+AGG + chr1_1:51357227-51357246 None:intergenic 35.0%
!! AAGCCACTCTTTAAAGCATT+TGG + chr1_1:51357529-51357548 None:intergenic 35.0%
!!! TGTAATTTTCAGGTTCAAGG+AGG - chr1_1:51357561-51357580 Msa0027090:CDS 35.0%
! TCAAAAAACTCAGGCTTGTT+TGG + chr1_1:51357990-51358009 None:intergenic 35.0%
TAAAATGCACGCATACACAA+TGG + chr1_1:51358015-51358034 None:intergenic 35.0%
GTTTGGTACTCATTAGATTG+CGG - chr1_1:51358042-51358061 Msa0027090:intron 35.0%
! CGTGGATACATCTTTTATTG+TGG - chr1_1:51358111-51358130 Msa0027090:CDS 35.0%
!! TTGCTCATGCCTTTTAGTTA+TGG - chr1_1:51358236-51358255 Msa0027090:intron 35.0%
!! TGCTCATGCCTTTTAGTTAT+GGG - chr1_1:51358237-51358256 Msa0027090:intron 35.0%
TATACTTCGAATCAGTTGGT+GGG + chr1_1:51358379-51358398 None:intergenic 35.0%
TTATACTTCGAATCAGTTGG+TGG + chr1_1:51358380-51358399 None:intergenic 35.0%
ACCGTTTACGTACATTATTG+TGG - chr1_1:51358604-51358623 Msa0027090:intron 35.0%
TTGTGGACAATGAAACGTAA+TGG - chr1_1:51358621-51358640 Msa0027090:intron 35.0%
TACTATCTTGACTTCTTCTC+TGG - chr1_1:51358665-51358684 Msa0027090:intron 35.0%
TGTGCAAAGATGATAAAGAC+AGG + chr1_1:51358784-51358803 None:intergenic 35.0%
AATGCGATGCATAAATTGGA+AGG - chr1_1:51358836-51358855 Msa0027090:intron 35.0%
TGAAGATCTTCAAGCATTTC+TGG - chr1_1:51358922-51358941 Msa0027090:CDS 35.0%
ACATCAGTGTTGTCAAATAG+TGG + chr1_1:51359212-51359231 None:intergenic 35.0%
!! GAGACTAATTGTTCAAGTTG+TGG - chr1_1:51359238-51359257 Msa0027090:intron 35.0%
AAGAAGGGTCATACTCATAT+AGG + chr1_1:51359302-51359321 None:intergenic 35.0%
! ACTCGATTCTGAAAGATCTT+GGG + chr1_1:51359448-51359467 None:intergenic 35.0%
! AACTCGATTCTGAAAGATCT+TGG + chr1_1:51359449-51359468 None:intergenic 35.0%
!! ATCGAGTTTGTTATCTGCAT+TGG - chr1_1:51359461-51359480 Msa0027090:intron 35.0%
!! AGTTTGTTATCTGCATTGGA+TGG - chr1_1:51359465-51359484 Msa0027090:intron 35.0%
TTTATAGGTGATAACCTCGT+GGG + chr1_1:51359544-51359563 None:intergenic 35.0%
ATTTATAGGTGATAACCTCG+TGG + chr1_1:51359545-51359564 None:intergenic 35.0%
ACTATCTCATGTTCAACCAT+TGG + chr1_1:51359739-51359758 None:intergenic 35.0%
TCACACTTTATCGTCTAAGT+TGG + chr1_1:51359770-51359789 None:intergenic 35.0%
GGGTGAAAAAAAGAAACAAC+AGG + chr1_1:51359870-51359889 None:intergenic 35.0%
! TTTCGCTTGCCTTATGTTTT+TGG - chr1_1:51359978-51359997 Msa0027090:intron 35.0%
! TTTTGCTTGTAAAGGAGGTT+GGG - chr1_1:51360156-51360175 Msa0027090:intron 35.0%
GGGAAAATAAAAGAGCTTCA+CGG - chr1_1:51360184-51360203 Msa0027090:intron 35.0%
AAAATAAAAGAGCTTCACGG+AGG - chr1_1:51360187-51360206 Msa0027090:intron 35.0%
AAATAAAAGAGCTTCACGGA+GGG - chr1_1:51360188-51360207 Msa0027090:intron 35.0%
! ATCTTGTATTTTTCCAGTGC+AGG - chr1_1:51360222-51360241 Msa0027090:intron 35.0%
CCTTTCTGCATCAATTAAGA+TGG + chr1_1:51360266-51360285 None:intergenic 35.0%
CCATCTTAATTGATGCAGAA+AGG - chr1_1:51360263-51360282 Msa0027090:intron 35.0%
!!! ACTTTTTGTTTCTATACGCC+AGG - chr1_1:51360463-51360482 Msa0027090:intron 35.0%
!!! TAACATGTATTTTGGGGCAA+GGG + chr1_1:51360569-51360588 None:intergenic 35.0%
!!! TTAACATGTATTTTGGGGCA+AGG + chr1_1:51360570-51360589 None:intergenic 35.0%
TTTATGACTGCTGAAACCAA+TGG - chr1_1:51360657-51360676 Msa0027090:CDS 35.0%
GGTAAAACGATATGTACCAT+TGG + chr1_1:51360676-51360695 None:intergenic 35.0%
AAAATTAGGGCAACCAGAAA+AGG + chr1_1:51360697-51360716 None:intergenic 35.0%
!!! CGCTTGTTTCTATCCTTTTA+AGG - chr1_1:51360874-51360893 Msa0027090:intron 35.0%
TTACGTTGGGTAACCTTAAA+AGG + chr1_1:51360890-51360909 None:intergenic 35.0%
GTTACCCAACGTAAAATTTG+TGG - chr1_1:51360896-51360915 Msa0027090:intron 35.0%
! ACAGCCACAAATTTTACGTT+GGG + chr1_1:51360903-51360922 None:intergenic 35.0%
! TACAGCCACAAATTTTACGT+TGG + chr1_1:51360904-51360923 None:intergenic 35.0%
GGTATGTGTAGATATGATTG+TGG - chr1_1:51360969-51360988 Msa0027090:intron 35.0%
AATTCCAACCTGCATATCAT+CGG - chr1_1:51361137-51361156 Msa0027090:CDS 35.0%
CTGCTTGTAGACCATAAAAA+TGG + chr1_1:51361235-51361254 None:intergenic 35.0%
!! CTTTAATTTTGCCACTGACT+GGG + chr1_1:51361596-51361615 None:intergenic 35.0%
GTTATCGGGAAACTATACAT+CGG - chr1_1:51361634-51361653 Msa0027090:CDS 35.0%
CTGCTAATGTGGTATGTTAA+TGG - chr1_1:51361915-51361934 Msa0027090:intron 35.0%
! TGCTTGGATAAGTTTGTTTG+AGG + chr1_1:51362025-51362044 None:intergenic 35.0%
! TAGGATACATTTGAAGTGCT+TGG + chr1_1:51362041-51362060 None:intergenic 35.0%
!! TGCATTTTAATGGGGATTTC+AGG - chr1_1:51362143-51362162 Msa0027090:intron 35.0%
CATTTATGTAAGAGAGAGGA+TGG - chr1_1:51362383-51362402 Msa0027090:CDS 35.0%
GATCCACTTCACTCACTTTA+TGG - chr1_1:51356719-51356738 Msa0027090:three_prime_UTR 40.0%
! AAAAGTGCAGAGATTCGACA+TGG + chr1_1:51356828-51356847 None:intergenic 40.0%
! TTCATTCCCGCCAAATTTTG+AGG - chr1_1:51357107-51357126 Msa0027090:intron 40.0%
AATCAGAACAACCGCTTTGA+AGG - chr1_1:51357241-51357260 Msa0027090:intron 40.0%
AAAGGAAGCAACCTTCAAAG+CGG + chr1_1:51357255-51357274 None:intergenic 40.0%
GCTGCTAGAATTGATTATGG+AGG + chr1_1:51357505-51357524 None:intergenic 40.0%
GGAGCTGCTAGAATTGATTA+TGG + chr1_1:51357508-51357527 None:intergenic 40.0%
!! GCTCCAAATGCTTTAAAGAG+TGG - chr1_1:51357523-51357542 Msa0027090:intron 40.0%
!!! AATTTTCAGGTTCAAGGAGG+TGG - chr1_1:51357564-51357583 Msa0027090:CDS 40.0%
TGTTTAGACCTAAACGAGCA+AGG + chr1_1:51357614-51357633 None:intergenic 40.0%
CTCGTTTAGGTCTAAACACA+AGG - chr1_1:51357616-51357635 Msa0027090:CDS 40.0%
AAACACAAGGCTCGTTTCTA+AGG - chr1_1:51357629-51357648 Msa0027090:CDS 40.0%
! TTAACAGTTTAGGCGCTGTT+TGG - chr1_1:51357720-51357739 Msa0027090:intron 40.0%
! AGATACCTGTGAGACTGTTT+TGG + chr1_1:51357933-51357952 None:intergenic 40.0%
TTAGATGAGCTACAGACTGA+TGG - chr1_1:51358088-51358107 Msa0027090:intron 40.0%
CAAGAAATCAGGTACAGACT+TGG + chr1_1:51358318-51358337 None:intergenic 40.0%
! ATACTTCGAATCAGTTGGTG+GGG + chr1_1:51358378-51358397 None:intergenic 40.0%
! TTATGCTCCCTGTTATTTGC+AGG - chr1_1:51358562-51358581 Msa0027090:intron 40.0%
AAATTTCAAAAGAGAGGGGG+AGG - chr1_1:51358703-51358722 Msa0027090:intron 40.0%
AATTTCAAAAGAGAGGGGGA+GGG - chr1_1:51358704-51358723 Msa0027090:intron 40.0%
CAATTTATGCATCGCATTGC+TGG + chr1_1:51358834-51358853 None:intergenic 40.0%
CAGCAATGCGATGCATAAAT+TGG - chr1_1:51358832-51358851 Msa0027090:intron 40.0%
TTGTGGATCGCAAGAAATAG+CGG - chr1_1:51359053-51359072 Msa0027090:intron 40.0%
AATAGCCTCTTGCAATTGCA+AGG - chr1_1:51359261-51359280 Msa0027090:intron 40.0%
CCATGGCAGGATATAAAGAA+GGG + chr1_1:51359317-51359336 None:intergenic 40.0%
GATCCATACTTTATAGCACC+AGG - chr1_1:51359342-51359361 Msa0027090:intron 40.0%
!! CAACCTGGTGCTATAAAGTA+TGG + chr1_1:51359348-51359367 None:intergenic 40.0%
TATCATTGGAGGATATCCAG+GGG + chr1_1:51359424-51359443 None:intergenic 40.0%
GTATCATTGGAGGATATCCA+GGG + chr1_1:51359425-51359444 None:intergenic 40.0%
! GAAAGATCTTGGGGTATCAT+TGG + chr1_1:51359438-51359457 None:intergenic 40.0%
! CTCGATTCTGAAAGATCTTG+GGG + chr1_1:51359447-51359466 None:intergenic 40.0%
CATGTTCAACCATTGGCATT+GGG + chr1_1:51359732-51359751 None:intergenic 40.0%
TCATGTTCAACCATTGGCAT+TGG + chr1_1:51359733-51359752 None:intergenic 40.0%
TGCACTTGCAATATCCACTA+TGG + chr1_1:51359829-51359848 None:intergenic 40.0%
! AAATTACAGGGTATCCAACC+AGG - chr1_1:51360029-51360048 Msa0027090:intron 40.0%
! AATTACAGGGTATCCAACCA+GGG - chr1_1:51360030-51360049 Msa0027090:intron 40.0%
GATTCATAAAACACCCTGGT+TGG + chr1_1:51360046-51360065 None:intergenic 40.0%
! CTTTTGCTTGTAAAGGAGGT+TGG - chr1_1:51360155-51360174 Msa0027090:intron 40.0%
TAATTGATGCAGAAAGGCCA+AGG - chr1_1:51360269-51360288 Msa0027090:intron 40.0%
AATTGATGCAGAAAGGCCAA+GGG - chr1_1:51360270-51360289 Msa0027090:intron 40.0%
ATGCTCAGCTAAGTTTCCAA+AGG - chr1_1:51360333-51360352 Msa0027090:intron 40.0%
GATAACCTTTCTTTGCTGAC+AGG - chr1_1:51360821-51360840 Msa0027090:intron 40.0%
! GCTGTAACTTTGGGAAAAGA+TGG - chr1_1:51360918-51360937 Msa0027090:intron 40.0%
GGTGGATGTAGACAACTTAT+TGG - chr1_1:51361080-51361099 Msa0027090:intron 40.0%
AGACAACTTATTGGAATCGC+TGG - chr1_1:51361089-51361108 Msa0027090:intron 40.0%
ATTACCGATGATATGCAGGT+TGG + chr1_1:51361144-51361163 None:intergenic 40.0%
TTGCATTACCGATGATATGC+AGG + chr1_1:51361148-51361167 None:intergenic 40.0%
CTTGGCAGAAAGATTTGGAA+TGG + chr1_1:51361211-51361230 None:intergenic 40.0%
CATTCCAAATCTTTCTGCCA+AGG - chr1_1:51361209-51361228 Msa0027090:intron 40.0%
!!! TTCTGCCAAGGCCATTTTTA+TGG - chr1_1:51361221-51361240 Msa0027090:intron 40.0%
GTAGACCATAAAAATGGCCT+TGG + chr1_1:51361229-51361248 None:intergenic 40.0%
! TACGTGTCACTATGAATGTC+TGG + chr1_1:51361460-51361479 None:intergenic 40.0%
!! ATCCCTGAAGTTCTAGAAAC+AGG - chr1_1:51361493-51361512 Msa0027090:intron 40.0%
!! TCCCTGAAGTTCTAGAAACA+GGG - chr1_1:51361494-51361513 Msa0027090:intron 40.0%
!! TCCCTGTTTCTAGAACTTCA+GGG + chr1_1:51361498-51361517 None:intergenic 40.0%
!! ATCCCTGTTTCTAGAACTTC+AGG + chr1_1:51361499-51361518 None:intergenic 40.0%
!! CCTTTAATTTTGCCACTGAC+TGG + chr1_1:51361597-51361616 None:intergenic 40.0%
CCAGTCAGTGGCAAAATTAA+AGG - chr1_1:51361594-51361613 Msa0027090:intron 40.0%
GTGGCAAAATTAAAGGCAGA+AGG - chr1_1:51361601-51361620 Msa0027090:intron 40.0%
TTGCGAAAGACACAAATTGG+TGG + chr1_1:51361787-51361806 None:intergenic 40.0%
CCTTTGCGAAAGACACAAAT+TGG + chr1_1:51361790-51361809 None:intergenic 40.0%
CCAATTTGTGTCTTTCGCAA+AGG - chr1_1:51361787-51361806 Msa0027090:intron 40.0%
CATACCACATTAGCAGCAAA+GGG + chr1_1:51361911-51361930 None:intergenic 40.0%
ACATACCACATTAGCAGCAA+AGG + chr1_1:51361912-51361931 None:intergenic 40.0%
ACCTGTTGGAGATATGAGTT+AGG - chr1_1:51362104-51362123 Msa0027090:intron 40.0%
ACCTAACTCATATCTCCAAC+AGG + chr1_1:51362108-51362127 None:intergenic 40.0%
! TTTTAATGGGGATTTCAGGC+AGG - chr1_1:51362147-51362166 Msa0027090:intron 40.0%
TCTACTGAATAAAGGACGCT+AGG + chr1_1:51362230-51362249 None:intergenic 40.0%
! TCCAGTATTGAGCCAATACA+AGG - chr1_1:51362253-51362272 Msa0027090:intron 40.0%
! CCAGTATTGAGCCAATACAA+GGG - chr1_1:51362254-51362273 Msa0027090:intron 40.0%
TATTGAGCCAATACAAGGGA+TGG - chr1_1:51362258-51362277 Msa0027090:intron 40.0%
TGGCCATAAAGTGAGTGAAG+TGG + chr1_1:51356725-51356744 None:intergenic 45.0%
GCAGAGATTCGACATGGTTA+CGG + chr1_1:51356822-51356841 None:intergenic 45.0%
AAAGAGAGGGAAACGCACAA+CGG + chr1_1:51357077-51357096 None:intergenic 45.0%
!! ATCAGTCACCGTCGATTTCT+TGG - chr1_1:51357184-51357203 Msa0027090:intron 45.0%
AACGGTAGCCAAGAAATCGA+CGG + chr1_1:51357195-51357214 None:intergenic 45.0%
TGGCTTAGGATAAGCAGCAA+CGG + chr1_1:51357213-51357232 None:intergenic 45.0%
!! CACTGATTCTACTTGACGCT+AGG + chr1_1:51357438-51357457 None:intergenic 45.0%
!! AAGGCAGGTTAAAGCATTGC+CGG + chr1_1:51357595-51357614 None:intergenic 45.0%
TTAACCTGCCTTGCTCGTTT+AGG - chr1_1:51357603-51357622 Msa0027090:CDS 45.0%
GAGAAATCAGCTGCAGACTA+GGG + chr1_1:51358296-51358315 None:intergenic 45.0%
GAGTGGATGTGCAAGAAATC+AGG + chr1_1:51358329-51358348 None:intergenic 45.0%
ATTTCAAAAGAGAGGGGGAG+GGG - chr1_1:51358705-51358724 Msa0027090:intron 45.0%
GAGTTAGGTGGATCTAGTTG+AGG - chr1_1:51358735-51358754 Msa0027090:intron 45.0%
CAACTCTGCGAGTTATGCTA+AGG + chr1_1:51359004-51359023 None:intergenic 45.0%
TATGCTGTAGTGCTAGAGTG+CGG - chr1_1:51359092-51359111 Msa0027090:intron 45.0%
GCTATAGTGCTATAGAGTGG+CGG + chr1_1:51359188-51359207 None:intergenic 45.0%
! GGTGCTATAGTGCTATAGAG+TGG + chr1_1:51359191-51359210 None:intergenic 45.0%
CCCTTCTTTATATCCTGCCA+TGG - chr1_1:51359314-51359333 Msa0027090:intron 45.0%
GCCATGGCAGGATATAAAGA+AGG + chr1_1:51359318-51359337 None:intergenic 45.0%
TCTTTATATCCTGCCATGGC+AGG - chr1_1:51359318-51359337 Msa0027090:intron 45.0%
AAAGTATGGATCTCCTGCCA+TGG + chr1_1:51359334-51359353 None:intergenic 45.0%
CGAACTTGTATACATACCCC+TGG - chr1_1:51359405-51359424 Msa0027090:intron 45.0%
GGTATCATTGGAGGATATCC+AGG + chr1_1:51359426-51359445 None:intergenic 45.0%
! AGATCTTGGGGTATCATTGG+AGG + chr1_1:51359435-51359454 None:intergenic 45.0%
TTGTAAAGGAGGTTGGGAGT+GGG - chr1_1:51360162-51360181 Msa0027090:intron 45.0%
AGATCATCTAACCCTTCCCT+TGG + chr1_1:51360289-51360308 None:intergenic 45.0%
GGAATCGCTGGAGTTAAGAA+AGG - chr1_1:51361101-51361120 Msa0027090:intron 45.0%
! ATGGCCTTGGCAGAAAGATT+TGG + chr1_1:51361216-51361235 None:intergenic 45.0%
GTGACACGTACTGAATGACT+TGG - chr1_1:51361470-51361489 Msa0027090:intron 45.0%
AAAGGCAGAAGGAATAGGGA+CGG - chr1_1:51361612-51361631 Msa0027090:CDS 45.0%
GAAGGAATAGGGACGGTTAT+CGG - chr1_1:51361619-51361638 Msa0027090:CDS 45.0%
AAGGAATAGGGACGGTTATC+GGG - chr1_1:51361620-51361639 Msa0027090:CDS 45.0%
!! CCCTTGTATTGGCTCAATAC+TGG + chr1_1:51362257-51362276 None:intergenic 45.0%
ACTGAAGCCATCCCTTGTAT+TGG + chr1_1:51362268-51362287 None:intergenic 45.0%
AATACAAGGGATGGCTTCAG+TGG - chr1_1:51362267-51362286 Msa0027090:intron 45.0%
ATACAAGGGATGGCTTCAGT+GGG - chr1_1:51362268-51362287 Msa0027090:intron 45.0%
!! AAAACTATTAAAAAAAAAAA+AGG + chr1_1:51357273-51357292 None:intergenic 5.0%
ATACACGCACGTGCTTATGC+AGG - chr1_1:51357151-51357170 Msa0027090:intron 50.0%
GCGTCAAGTAGAATCAGTGC+TGG - chr1_1:51357439-51357458 Msa0027090:intron 50.0%
! GTTCAAGGAGGTGGTAATGC+CGG - chr1_1:51357573-51357592 Msa0027090:CDS 50.0%
TAGACCTAAACGAGCAAGGC+AGG + chr1_1:51357610-51357629 None:intergenic 50.0%
GCTCTCCAAAACAGTCTCAC+AGG - chr1_1:51357925-51357944 Msa0027090:intron 50.0%
CATCTAATATGCCCCTGCCT+GGG + chr1_1:51358075-51358094 None:intergenic 50.0%
TCATCTAATATGCCCCTGCC+TGG + chr1_1:51358076-51358095 None:intergenic 50.0%
GGAGAAATCAGCTGCAGACT+AGG + chr1_1:51358297-51358316 None:intergenic 50.0%
TTTCAAAAGAGAGGGGGAGG+GGG - chr1_1:51358706-51358725 Msa0027090:intron 50.0%
GGAAGCCTTGCAATTGCAAG+AGG + chr1_1:51359269-51359288 None:intergenic 50.0%
GAATGAGTCAAAGGGCAACC+TGG + chr1_1:51359363-51359382 None:intergenic 50.0%
! TTGGCATTGGGATGATGAGC+TGG + chr1_1:51359720-51359739 None:intergenic 50.0%
GCTCATCATCCCAATGCCAA+TGG - chr1_1:51359720-51359739 Msa0027090:CDS 50.0%
CTTGTAAAGGAGGTTGGGAG+TGG - chr1_1:51360161-51360180 Msa0027090:intron 50.0%
TGTAAAGGAGGTTGGGAGTG+GGG - chr1_1:51360163-51360182 Msa0027090:intron 50.0%
! TTTTTCCAGTGCAGGCAGCT+AGG - chr1_1:51360230-51360249 Msa0027090:intron 50.0%
ATGCAGAAAGGCCAAGGGAA+GGG - chr1_1:51360275-51360294 Msa0027090:intron 50.0%
CCATGCCTGTCAGCAAAGAA+AGG + chr1_1:51360829-51360848 None:intergenic 50.0%
CCTTTCTTTGCTGACAGGCA+TGG - chr1_1:51360826-51360845 Msa0027090:intron 50.0%
AGGATAGAAACAAGCGCTCG+CGG + chr1_1:51360870-51360889 None:intergenic 50.0%
!! GTAGGACTTGCTGCCAGAAA+AGG + chr1_1:51361051-51361070 None:intergenic 50.0%
AGCAAGTCCTACCACAGAAG+AGG - chr1_1:51361059-51361078 Msa0027090:intron 50.0%
AAGTCCTACCACAGAAGAGG+TGG - chr1_1:51361062-51361081 Msa0027090:intron 50.0%
ACATCCACCTCTTCTGTGGT+AGG + chr1_1:51361069-51361088 None:intergenic 50.0%
GTCTACATCCACCTCTTCTG+TGG + chr1_1:51361073-51361092 None:intergenic 50.0%
TGTAGACTTGTAGCGCGAAC+TGG + chr1_1:51361299-51361318 None:intergenic 50.0%
GTGGTATCAACAAGCTCCGA+GGG + chr1_1:51361679-51361698 None:intergenic 50.0%
AGTGGTATCAACAAGCTCCG+AGG + chr1_1:51361680-51361699 None:intergenic 50.0%
!! TCGGAGCTTGTTGATACCAC+TGG - chr1_1:51361679-51361698 Msa0027090:intron 50.0%
CTTGTTGATACCACTGGTGC+CGG - chr1_1:51361685-51361704 Msa0027090:intron 50.0%
TTGTTGATACCACTGGTGCC+GGG - chr1_1:51361686-51361705 Msa0027090:intron 50.0%
GCAAAGGGTAGCATTGTCTC+TGG + chr1_1:51361896-51361915 None:intergenic 50.0%
GCTACCCTTTGCTGCTAATG+TGG - chr1_1:51361904-51361923 Msa0027090:intron 50.0%
TGCTCCTAGATCTCTGCACT+TGG + chr1_1:51362175-51362194 None:intergenic 50.0%
! AGAGATCTAGGAGCACGAAG+CGG - chr1_1:51362180-51362199 Msa0027090:intron 50.0%
GAATAAAGGACGCTAGGCGT+GGG + chr1_1:51362224-51362243 None:intergenic 50.0%
TGAATAAAGGACGCTAGGCG+TGG + chr1_1:51362225-51362244 None:intergenic 50.0%
TACAAGGGATGGCTTCAGTG+GGG - chr1_1:51362269-51362288 Msa0027090:intron 50.0%
!! AACGGTGGCGCTTTGAGGAA+CGG + chr1_1:51357059-51357078 None:intergenic 55.0%
ACGCACGTGCTTATGCAGGT+GGG - chr1_1:51357155-51357174 Msa0027090:intron 55.0%
!! GTGCTTATGCAGGTGGGTTG+CGG - chr1_1:51357161-51357180 Msa0027090:intron 55.0%
TAGATTGCGGATGACAGCCC+AGG - chr1_1:51358055-51358074 Msa0027090:intron 55.0%
! TGAGCTACAGACTGATGGCG+TGG - chr1_1:51358093-51358112 Msa0027090:intron 55.0%
TTCAAAAGAGAGGGGGAGGG+GGG - chr1_1:51358707-51358726 Msa0027090:intron 55.0%
TATGGATCTCCTGCCATGGC+AGG + chr1_1:51359330-51359349 None:intergenic 55.0%
TGCTCTAGTTGTTGCCCACG+AGG - chr1_1:51359527-51359546 Msa0027090:intron 55.0%
GTAAAGGAGGTTGGGAGTGG+GGG - chr1_1:51360164-51360183 Msa0027090:intron 55.0%
TTCTTCCTAGCTGCCTGCAC+TGG + chr1_1:51360238-51360257 None:intergenic 55.0%
GATGCAGAAAGGCCAAGGGA+AGG - chr1_1:51360274-51360293 Msa0027090:intron 55.0%
TTGCTGACAGGCATGGACAG+AGG - chr1_1:51360833-51360852 Msa0027090:intron 55.0%
!! CTGCTCGAGAGAAGTGTCAG+TGG - chr1_1:51360948-51360967 Msa0027090:intron 55.0%
CTGACTGGGTGCAAGGGAAA+AGG + chr1_1:51361582-51361601 None:intergenic 55.0%
TTTCCCTTGCACCCAGTCAG+TGG - chr1_1:51361582-51361601 Msa0027090:intron 55.0%
! TTGCCACTGACTGGGTGCAA+GGG + chr1_1:51361588-51361607 None:intergenic 55.0%
! TTTGCCACTGACTGGGTGCA+AGG + chr1_1:51361589-51361608 None:intergenic 55.0%
GTATCAACAAGCTCCGAGGG+CGG + chr1_1:51361676-51361695 None:intergenic 55.0%
GGTGCCAAGTGCAGAGATCT+AGG - chr1_1:51362168-51362187 Msa0027090:intron 55.0%
GAGAGGGAAACGCACAACGG+TGG + chr1_1:51357074-51357093 None:intergenic 60.0%
CACGCACGTGCTTATGCAGG+TGG - chr1_1:51357154-51357173 Msa0027090:intron 60.0%
!! GTGGGGTTCTGGACTGCCAA+TGG - chr1_1:51358504-51358523 Msa0027090:intron 60.0%
! AGGGGGGAGCATGAGTTAGG+TGG - chr1_1:51358723-51358742 Msa0027090:intron 60.0%
!! AGCTGAGAGCATTCCGCCCT+CGG - chr1_1:51361660-51361679 Msa0027090:CDS 60.0%
!! GGCGCTTTGAGGAACGGAGG+AGG + chr1_1:51357053-51357072 None:intergenic 65.0%
!! GGTGGCGCTTTGAGGAACGG+AGG + chr1_1:51357056-51357075 None:intergenic 65.0%
CGCACAACGGTGGCGCTTTG+AGG + chr1_1:51357064-51357083 None:intergenic 65.0%
TTGCGGATGACAGCCCAGGC+AGG - chr1_1:51358059-51358078 Msa0027090:intron 65.0%
TGCGGATGACAGCCCAGGCA+GGG - chr1_1:51358060-51358079 Msa0027090:intron 65.0%
! GGGAGGGGGGAGCATGAGTT+AGG - chr1_1:51358720-51358739 Msa0027090:intron 65.0%
GCGGATGACAGCCCAGGCAG+GGG - chr1_1:51358061-51358080 Msa0027090:intron 70.0%
AGGCGTGGGTCTGCGCGGTA+TGG + chr1_1:51362210-51362229 None:intergenic 70.0%
ACGCTAGGCGTGGGTCTGCG+CGG + chr1_1:51362215-51362234 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 51356710 51362550 51356710 ID=Msa0027090;Name=Msa0027090
chr1_1 mRNA 51356710 51362550 51356710 ID=Msa0027090-mRNA-1;Parent=Msa0027090;Name=Msa0027090-mRNA-1;_AED=0.32;_eAED=0.32;_QI=117|1|1|1|1|1|13|302|406
chr1_1 exon 51356710 51357095 51356710 ID=Msa0027090-mRNA-1:exon:15002;Parent=Msa0027090-mRNA-1
chr1_1 exon 51357335 51357387 51357335 ID=Msa0027090-mRNA-1:exon:15001;Parent=Msa0027090-mRNA-1
chr1_1 exon 51357524 51357662 51357524 ID=Msa0027090-mRNA-1:exon:15000;Parent=Msa0027090-mRNA-1
chr1_1 exon 51358102 51358199 51358102 ID=Msa0027090-mRNA-1:exon:14999;Parent=Msa0027090-mRNA-1
chr1_1 exon 51358291 51358417 51358291 ID=Msa0027090-mRNA-1:exon:14998;Parent=Msa0027090-mRNA-1
chr1_1 exon 51358906 51359016 51358906 ID=Msa0027090-mRNA-1:exon:14997;Parent=Msa0027090-mRNA-1
chr1_1 exon 51359712 51359862 51359712 ID=Msa0027090-mRNA-1:exon:14996;Parent=Msa0027090-mRNA-1
chr1_1 exon 51360624 51360676 51360624 ID=Msa0027090-mRNA-1:exon:14995;Parent=Msa0027090-mRNA-1
chr1_1 exon 51361128 51361202 51361128 ID=Msa0027090-mRNA-1:exon:14994;Parent=Msa0027090-mRNA-1
chr1_1 exon 51361610 51361687 51361610 ID=Msa0027090-mRNA-1:exon:14993;Parent=Msa0027090-mRNA-1
chr1_1 exon 51361998 51362087 51361998 ID=Msa0027090-mRNA-1:exon:14992;Parent=Msa0027090-mRNA-1
chr1_1 exon 51362182 51362256 51362182 ID=Msa0027090-mRNA-1:exon:14991;Parent=Msa0027090-mRNA-1
chr1_1 exon 51362347 51362550 51362347 ID=Msa0027090-mRNA-1:exon:14990;Parent=Msa0027090-mRNA-1
chr1_1 five_prime_UTR 51362434 51362550 51362434 ID=Msa0027090-mRNA-1:five_prime_utr;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51362347 51362433 51362347 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51362182 51362256 51362182 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51361998 51362087 51361998 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51361610 51361687 51361610 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51361128 51361202 51361128 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51360624 51360676 51360624 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51359712 51359862 51359712 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51358906 51359016 51358906 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51358291 51358417 51358291 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51358102 51358199 51358102 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51357524 51357662 51357524 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51357335 51357387 51357335 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 CDS 51357012 51357095 51357012 ID=Msa0027090-mRNA-1:cds;Parent=Msa0027090-mRNA-1
chr1_1 three_prime_UTR 51356710 51357011 51356710 ID=Msa0027090-mRNA-1:three_prime_utr;Parent=Msa0027090-mRNA-1
Gene Sequence

>Msa0027090

ATGTCGAATCTCTGCACTTTTTCTTCTAATATTTCTGCTTCTTCAACTTTCATCTTCAACAATATTCAACATCTCAAATTCTACAATTTAACAAGGAATCATCGCAGTAGAAATTTGAAGGTCAAAATGTGCTCCTCCTCCGTTCCTCAAAGCGCCACCGTTGTGGGTTGCGGATCAGTCACCGTCGATTTCTTGGCTACCGTTGCTGCTTATCCTAAGCCAGATGATAAAATCAGAACAACCGCTTTGAAGGTTCAAGGAGGTGGTAATGCCGGCAATGCTTTAACCTGCCTTGCTCGTTTAGGTCTAAACACAAGGCTCGTTTCTAAGATTGCGGATGACAGCCCAGGCAGGGGCATATTAGATGAGCTACAGACTGATGGCGTGGATACATCTTTTATTGTGGTATCTAAAGAGGGAACTTCACCGTTTACGTACATTATTGTGGACAATGAAACGAAGACTCGAACTTGTATACATACCCCTGGATATCCTCCAATGATACCCCAAGATCTTTCAGAATCGAGTTTGTTATCTGCATTGGATGGAGCAAGCATTGTATATTTTGACGGGAGATTGTATGAAACTGCTCTAGTTGTTGCCCACGAGGCAGCTAGGAAGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTAGATGATCTCCTGAAATTAGCTGATTATGTTGTATGCTCAGCTAAGTTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCGCGAGCGCTTGTTTCTATCCTTTTAAGGTTACCCAACGTAAAATTTGTGGCTGTAACTTTGGGAAAAGATGGTTGTATACTGCTCGAGAGAAGTGTCAGTGCAAGTCCTACCACAGAAGAGGTGGATGTAGACAACTTATTGGAATCGCTGGAGTTAAGAAAGGATAAGAGTGCATCAATTCCAACCTGCATATCATCGTCAGTGGCAAAATTAAAGGCAGAAGGAATAGGGACGGTTATCGGGAAACTATACATCGGTACAGCTGAGAGCATTCCGCCCTCGGAGCTTGTTGATACCACTGGTGCCGGGGATGCATTTATTGGATCTGTGATCTATGCTATTTGTTTGAAGTTCTCACCAGAGACAATGCTACCCTTTGCTGCTAATGTGGCAGGTGCCAAGTGCAGAGATCTAGGAGCACGAAGCGGTCTTCCATACCGCGCAGACCCACGCCTAGCGTCCTTTATTCAGTAG

Protein sequence

>Msa0027090

MSNLCTFSSNISASSTFIFNNIQHLKFYNLTRNHRSRNLKVKMCSSSVPQSATVVGCGSVTVDFLATVAAYPKPDDKIRTTALKVQGGGNAGNALTCLARLGLNTRLVSKIADDSPGRGILDELQTDGVDTSFIVVSKEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPQDLSESSLLSALDGASIVYFDGRLYETALVVAHEAARKNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPRALVSILLRLPNVKFVAVTLGKDGCILLERSVSASPTTEEVDVDNLLESLELRKDKSASIPTCISSSVAKLKAEGIGTVIGKLYIGTAESIPPSELVDTTGAGDAFIGSVIYAICLKFSPETMLPFAANVAGAKCRDLGARSGLPYRADPRLASFIQ*