AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0683610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683610 MtrunA17_Chr4g0030011 73.684 228 6 2 1 183 1 219 1.22e-109 312
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0683610 AT5G59770.1 47.573 206 55 2 9 170 8 204 1.17e-52 167

Find 68 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGAGAAATACCTTATATTT+AGG 0.112101 4_4:+46244745 Msa0683610:three_prime_UTR
TGGAATTAGCTTTGAGAATT+AGG 0.162526 4_4:+46244725 Msa0683610:three_prime_UTR
TGAGGTTCCATTCTATTATA+TGG 0.190904 4_4:+46242286 Msa0683610:CDS
TTTGTCCTTGCCATTGTTAA+TGG 0.212937 4_4:+46242257 Msa0683610:CDS
AGGAAATCATAATAACTAAA+TGG 0.223354 4_4:-46243953 None:intergenic
GAGAGCCATTGTTGTTATTA+TGG 0.226900 4_4:-46241816 None:intergenic
CTGCACAGATTTCTACCTTA+TGG 0.243764 4_4:-46244421 None:intergenic
ATATTCTTCTCCTTTATAAT+TGG 0.246163 4_4:-46243905 None:intergenic
TCTACTAACTTTGATTCATT+GGG 0.249834 4_4:-46241729 None:intergenic
GGAGAAATACCTTATATTTA+GGG 0.264068 4_4:+46244746 Msa0683610:three_prime_UTR
TTCTACTAACTTTGATTCAT+TGG 0.266010 4_4:-46241730 None:intergenic
AACAATCAAATGGTGCAAAT+TGG 0.273132 4_4:+46241696 None:intergenic
CGAAGTCATACATACTAAAA+TGG 0.275021 4_4:-46244622 None:intergenic
TCTAAAATATTTCCTTTGAT+TGG 0.298079 4_4:-46244536 None:intergenic
AACTCTTCAAATACAGGCTT+GGG 0.300741 4_4:-46244595 None:intergenic
GGAATGGATAAACTATAATT+AGG 0.324528 4_4:-46244234 None:intergenic
TACTGAGTACTGACTAATTA+AGG 0.334013 4_4:-46241969 None:intergenic
CTTTCTGTACCATTGTTACT+AGG 0.336549 4_4:+46244378 Msa0683610:three_prime_UTR
ATAACAATTGTACGAAATAA+TGG 0.346907 4_4:-46244513 None:intergenic
CCACTGCTACCCTAAATATA+AGG 0.350505 4_4:-46244755 None:intergenic
CGTTGCTTCCTTTGATGCAA+TGG 0.387638 4_4:+46242219 Msa0683610:CDS
GTTGCTTCCTTTGATGCAAT+GGG 0.387839 4_4:+46242220 Msa0683610:CDS
CCAGGCGCTTCCAATTATAA+AGG 0.426455 4_4:+46243895 Msa0683610:intron
CTCTCCACTTCCTCCATCAC+TGG 0.426494 4_4:+46241926 Msa0683610:CDS
TAGTTATTATGATTTCCTTA+AGG 0.432805 4_4:+46243958 Msa0683610:CDS
GGAAATCATAATAACTAAAT+GGG 0.435335 4_4:-46243952 None:intergenic
GGAATAAACTCTTCAAATAC+AGG 0.446971 4_4:-46244601 None:intergenic
AAACTCTTCAAATACAGGCT+TGG 0.455897 4_4:-46244596 None:intergenic
CTTCCTCCCCATTGCATCAA+AGG 0.457528 4_4:-46242227 None:intergenic
TTATAGTTTATCCATTCCTC+TGG 0.461684 4_4:+46244239 Msa0683610:CDS
CTTTGATGCAATGGGGAGGA+AGG 0.495138 4_4:+46242228 Msa0683610:CDS
TACAATTGTTATCCAATCAA+AGG 0.497645 4_4:+46244524 Msa0683610:three_prime_UTR
GCAATATCCATATAATAGAA+TGG 0.506236 4_4:-46242293 None:intergenic
AGTTCCAGTGATGGAGGAAG+TGG 0.507585 4_4:-46241930 None:intergenic
AATCAAAGTTAGTAGAAGAG+AGG 0.511792 4_4:+46241736 Msa0683610:five_prime_UTR
CCTTATATTTAGGGTAGCAG+TGG 0.512899 4_4:+46244755 Msa0683610:three_prime_UTR
GAAGTTATACACGGTGCCAT+TGG 0.520344 4_4:+46242100 Msa0683610:CDS
ACTAAATGGGAGGCTTGAAA+AGG 0.523268 4_4:-46243939 None:intergenic
GCCGCTGCTTGAACAAATGC+AGG 0.533526 4_4:-46244273 None:intergenic
GTGTCCTATTAAAATCCATA+AGG 0.535651 4_4:+46244406 Msa0683610:three_prime_UTR
AAAGGAAGCAACGCTCCGCT+CGG 0.561925 4_4:-46242209 None:intergenic
CTACTAACTTTGATTCATTG+GGG 0.563044 4_4:-46241728 None:intergenic
AAATCTGTGCAGAATAATGC+AGG 0.564159 4_4:+46244432 Msa0683610:three_prime_UTR
AGCATAAGTTCCAGTGATGG+AGG 0.564797 4_4:-46241936 None:intergenic
ACTGGAACTTATGCTTCTGC+CGG 0.569567 4_4:+46241944 Msa0683610:CDS
ACTAACTTTGATTCATTGGG+GGG 0.572060 4_4:-46241726 None:intergenic
ACCTGCATTTGTTCAAGCAG+CGG 0.572458 4_4:+46244272 Msa0683610:CDS
CATTGTTAATGGAATTCATG+AGG 0.578874 4_4:+46242268 Msa0683610:CDS
GTACTGACTAATTAAGGTGC+CGG 0.579270 4_4:-46241963 None:intergenic
GAAGAGAGGAGAGAATCCAT+TGG 0.582790 4_4:+46241750 Msa0683610:five_prime_UTR
TATAGTTTGAACCAGAGGAA+TGG 0.586252 4_4:-46244250 None:intergenic
CTTGAAAAGAGTTGTAAGCA+AGG 0.590281 4_4:-46241859 None:intergenic
TACTAACTTTGATTCATTGG+GGG 0.591664 4_4:-46241727 None:intergenic
CTAATCCATAATAACAACAA+TGG 0.598645 4_4:+46241811 Msa0683610:exon
CTCATGAATTCCATTAACAA+TGG 0.598925 4_4:-46242267 None:intergenic
ATACAGGCTTGGGGTGACAC+AGG 0.606804 4_4:-46244585 None:intergenic
GCAGGTATAGTTTGAACCAG+AGG 0.617176 4_4:-46244255 None:intergenic
CTTCCTTTGATGCAATGGGG+AGG 0.617578 4_4:+46242224 Msa0683610:CDS
GAATTCCATTAACAATGGCA+AGG 0.629089 4_4:-46242262 None:intergenic
CCGTGACAAGAAAAGAGCAT+AGG 0.630857 4_4:+46244315 Msa0683610:CDS
AATCATAATAACTAAATGGG+AGG 0.632223 4_4:-46243949 None:intergenic
ACACTTTGGCCTAGTAACAA+TGG 0.643283 4_4:-46244387 None:intergenic
AGAAGCATAAGTTCCAGTGA+TGG 0.646845 4_4:-46241939 None:intergenic
ACTCTTCAAATACAGGCTTG+GGG 0.648938 4_4:-46244594 None:intergenic
TTGCTTCCTTTGATGCAATG+GGG 0.657708 4_4:+46242221 Msa0683610:CDS
TCTTGCGTGGAGTATAGGCG+AGG 0.684008 4_4:+46242582 Msa0683610:CDS
GCATTCTTAGAAGTTATACA+CGG 0.719740 4_4:+46242091 Msa0683610:CDS
ATTTCAGGACTGGTGCCGAG+CGG 0.729266 4_4:+46242194 Msa0683610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATTGAATTAATGATT+AGG - chr4_4:46242044-46242063 None:intergenic 15.0%
!! AATTCAATAATCTAAACTAA+CGG - chr4_4:46242318-46242337 None:intergenic 15.0%
!! GGTAATTTATTCAATTGAAT+TGG + chr4_4:46242603-46242622 Msa0683610:intron 20.0%
!! TATGACTTATATTCAGAAAT+TGG + chr4_4:46242647-46242666 Msa0683610:intron 20.0%
!! TAAGCAAAAAGAAAAAGAAA+AGG - chr4_4:46243213-46243232 None:intergenic 20.0%
!! CTAATAATCAAAAGATAAAG+AGG - chr4_4:46243667-46243686 None:intergenic 20.0%
!!! CTCTTTATCTTTTGATTATT+AGG + chr4_4:46243665-46243684 Msa0683610:intron 20.0%
!! ATATTCTTCTCCTTTATAAT+TGG - chr4_4:46243908-46243927 None:intergenic 20.0%
!! GGAAATCATAATAACTAAAT+GGG - chr4_4:46243955-46243974 None:intergenic 20.0%
!! AGGAAATCATAATAACTAAA+TGG - chr4_4:46243956-46243975 None:intergenic 20.0%
!! TAGTTATTATGATTTCCTTA+AGG + chr4_4:46243958-46243977 Msa0683610:CDS 20.0%
!! ACATATAAAATGTTACCTTA+AGG - chr4_4:46243976-46243995 None:intergenic 20.0%
!!! AAACAACATTTTATATCACA+GGG - chr4_4:46244086-46244105 None:intergenic 20.0%
!!! AAAACAACATTTTATATCAC+AGG - chr4_4:46244087-46244106 None:intergenic 20.0%
!! TGTAATAATCTACAATTCAT+AGG - chr4_4:46244186-46244205 None:intergenic 20.0%
!!! TCAGTAATGATTAAGATTTT+AGG - chr4_4:46244482-46244501 None:intergenic 20.0%
!! ATAACAATTGTACGAAATAA+TGG - chr4_4:46244516-46244535 None:intergenic 20.0%
!!! TCTAAAATATTTCCTTTGAT+TGG - chr4_4:46244539-46244558 None:intergenic 20.0%
! TCTACTAACTTTGATTCATT+GGG - chr4_4:46241732-46241751 None:intergenic 25.0%
! TTCTACTAACTTTGATTCAT+TGG - chr4_4:46241733-46241752 None:intergenic 25.0%
! CTAATCCATAATAACAACAA+TGG + chr4_4:46241811-46241830 Msa0683610:exon 25.0%
! ATTCAATATTTCATCGTTGA+AGG + chr4_4:46242052-46242071 Msa0683610:intron 25.0%
! AAATTTCAACTACAGTTAGA+AGG - chr4_4:46242153-46242172 None:intergenic 25.0%
! GCAATATCCATATAATAGAA+TGG - chr4_4:46242296-46242315 None:intergenic 25.0%
!!! ATCAGAAGTATTTATACGAT+AGG + chr4_4:46242434-46242453 Msa0683610:intron 25.0%
! ACTTATATTCAGAAATTGGT+TGG + chr4_4:46242651-46242670 Msa0683610:intron 25.0%
!!! GTAGTTTTTCAATTATCCAA+TGG - chr4_4:46242738-46242757 None:intergenic 25.0%
!!! TGTATCTGTTATTTTAGAGT+TGG + chr4_4:46242840-46242859 Msa0683610:intron 25.0%
! ATTCATCAAGGAGAAAAAAA+AGG + chr4_4:46242976-46242995 Msa0683610:intron 25.0%
!! TTTTCTCGAATTATTAACAG+TGG - chr4_4:46243279-46243298 None:intergenic 25.0%
! TTATACCTAACTCATGTTTA+TGG + chr4_4:46243376-46243395 Msa0683610:intron 25.0%
! TTTATTGTGATTTATCCTGT+GGG + chr4_4:46243697-46243716 Msa0683610:intron 25.0%
! AACAAAACTTAACGATAAGA+GGG - chr4_4:46243762-46243781 None:intergenic 25.0%
! AAACAAAACTTAACGATAAG+AGG - chr4_4:46243763-46243782 None:intergenic 25.0%
! AATCATAATAACTAAATGGG+AGG - chr4_4:46243952-46243971 None:intergenic 25.0%
!! TATATGTAACTGATTAGTCA+TGG + chr4_4:46243989-46244008 Msa0683610:intron 25.0%
! TCAAACATAATTGAGTAGAA+AGG - chr4_4:46244113-46244132 None:intergenic 25.0%
! GGAATGGATAAACTATAATT+AGG - chr4_4:46244237-46244256 None:intergenic 25.0%
!!! TCTACCTTATGGATTTTAAT+AGG - chr4_4:46244413-46244432 None:intergenic 25.0%
! TACAATTGTTATCCAATCAA+AGG + chr4_4:46244524-46244543 Msa0683610:three_prime_UTR 25.0%
!!! CATTTTAGTATGTATGACTT+CGG + chr4_4:46244623-46244642 Msa0683610:three_prime_UTR 25.0%
! AGGAGAAATACCTTATATTT+AGG + chr4_4:46244745-46244764 Msa0683610:three_prime_UTR 25.0%
! GGAGAAATACCTTATATTTA+GGG + chr4_4:46244746-46244765 Msa0683610:three_prime_UTR 25.0%
TACTAACTTTGATTCATTGG+GGG - chr4_4:46241730-46241749 None:intergenic 30.0%
CTACTAACTTTGATTCATTG+GGG - chr4_4:46241731-46241750 None:intergenic 30.0%
AATCAAAGTTAGTAGAAGAG+AGG + chr4_4:46241736-46241755 Msa0683610:five_prime_UTR 30.0%
!! TACAACTCTTTTCAAGCAAT+TGG + chr4_4:46241866-46241885 Msa0683610:CDS 30.0%
!! TACTGAGTACTGACTAATTA+AGG - chr4_4:46241972-46241991 None:intergenic 30.0%
GCATTCTTAGAAGTTATACA+CGG + chr4_4:46242091-46242110 Msa0683610:CDS 30.0%
CAAGTCTTGAAATGAATTTC+AGG + chr4_4:46242179-46242198 Msa0683610:intron 30.0%
CTCATGAATTCCATTAACAA+TGG - chr4_4:46242270-46242289 None:intergenic 30.0%
CATTGTTAATGGAATTCATG+AGG + chr4_4:46242268-46242287 Msa0683610:CDS 30.0%
TGAGGTTCCATTCTATTATA+TGG + chr4_4:46242286-46242305 Msa0683610:CDS 30.0%
AACTGTTAATGTAACTCTTC+TGG + chr4_4:46242475-46242494 Msa0683610:intron 30.0%
GCAAGAAAAGTGATAAAAAC+GGG - chr4_4:46242568-46242587 None:intergenic 30.0%
CGCAAGAAAAGTGATAAAAA+CGG - chr4_4:46242569-46242588 None:intergenic 30.0%
!! TTTTTATCACTTTTCTTGCG+TGG + chr4_4:46242569-46242588 Msa0683610:CDS 30.0%
TACTCTATATCTCTAACCAT+TGG + chr4_4:46242719-46242738 Msa0683610:intron 30.0%
AACAGTTTAAACAGAAAGCA+AGG - chr4_4:46242896-46242915 None:intergenic 30.0%
CAATTTATGATAAGCAGTGT+TGG + chr4_4:46242939-46242958 Msa0683610:intron 30.0%
TTAGGTACTCATATTCATCA+AGG + chr4_4:46242964-46242983 Msa0683610:intron 30.0%
! ATTCTCTAAAAACAAGGGAA+GGG - chr4_4:46243158-46243177 None:intergenic 30.0%
! CTGACATTCTCTAAAAACAA+GGG - chr4_4:46243163-46243182 None:intergenic 30.0%
AGTTAGGTATAAATGAAGCA+CGG - chr4_4:46243368-46243387 None:intergenic 30.0%
GTATACCATAAACATGAGTT+AGG - chr4_4:46243384-46243403 None:intergenic 30.0%
TGACACAGTATTTATGGATT+TGG - chr4_4:46243419-46243438 None:intergenic 30.0%
! GATGATTTTGCTTCAATCTT+TGG + chr4_4:46243464-46243483 Msa0683610:intron 30.0%
GATAGAAAAATGCCTGATAT+AGG - chr4_4:46243556-46243575 None:intergenic 30.0%
TTCTATATTCTCCATAGTGA+TGG + chr4_4:46243582-46243601 Msa0683610:intron 30.0%
AGGATAAATCACAATAAACG+CGG - chr4_4:46243695-46243714 None:intergenic 30.0%
GTTTATTGTGATTTATCCTG+TGG + chr4_4:46243696-46243715 Msa0683610:intron 30.0%
TTATAGTTTATCCATTCCTC+TGG + chr4_4:46244239-46244258 Msa0683610:CDS 30.0%
!! TGGATTTTAATAGGACACTT+TGG - chr4_4:46244404-46244423 None:intergenic 30.0%
GTGTCCTATTAAAATCCATA+AGG + chr4_4:46244406-46244425 Msa0683610:three_prime_UTR 30.0%
GGAATAAACTCTTCAAATAC+AGG - chr4_4:46244604-46244623 None:intergenic 30.0%
CGAAGTCATACATACTAAAA+TGG - chr4_4:46244625-46244644 None:intergenic 30.0%
! TTTTAATCTTGCAAGTCGAA+AGG + chr4_4:46244646-46244665 Msa0683610:three_prime_UTR 30.0%
TTCTTCAAAGCAAAAACAAG+AGG - chr4_4:46244686-46244705 None:intergenic 30.0%
!! ACTACTCACTGTATTTTTGT+TGG + chr4_4:46244705-46244724 Msa0683610:three_prime_UTR 30.0%
!! TGGAATTAGCTTTGAGAATT+AGG + chr4_4:46244725-46244744 Msa0683610:three_prime_UTR 30.0%
ACTAACTTTGATTCATTGGG+GGG - chr4_4:46241729-46241748 None:intergenic 35.0%
!! CCTTTTTCACAAAACACCAA+TGG - chr4_4:46241769-46241788 None:intergenic 35.0%
!! CCATTGGTGTTTTGTGAAAA+AGG + chr4_4:46241766-46241785 Msa0683610:five_prime_UTR 35.0%
! GAGAGCCATTGTTGTTATTA+TGG - chr4_4:46241819-46241838 None:intergenic 35.0%
CTTGAAAAGAGTTGTAAGCA+AGG - chr4_4:46241862-46241881 None:intergenic 35.0%
!! ACTCTTTTCAAGCAATTGGA+TGG + chr4_4:46241870-46241889 Msa0683610:CDS 35.0%
! TTAATGATTAGGAGTGTGTG+AGG - chr4_4:46242033-46242052 None:intergenic 35.0%
ATGACAGTAAAACCTACCAA+TGG - chr4_4:46242119-46242138 None:intergenic 35.0%
CTTGAAATGAATTTCAGGAC+TGG + chr4_4:46242184-46242203 Msa0683610:intron 35.0%
TTTGTCCTTGCCATTGTTAA+TGG + chr4_4:46242257-46242276 Msa0683610:CDS 35.0%
GAATTCCATTAACAATGGCA+AGG - chr4_4:46242265-46242284 None:intergenic 35.0%
! TTGATGCATCTTGATGACAT+AGG + chr4_4:46242352-46242371 Msa0683610:intron 35.0%
AATTCTCTAACTCGTGTCTT+TGG + chr4_4:46242510-46242529 Msa0683610:intron 35.0%
AGAAAAGTGATAAAAACGGG+AGG - chr4_4:46242565-46242584 None:intergenic 35.0%
TACATCAGACACTATACTGT+CGG + chr4_4:46242755-46242774 Msa0683610:intron 35.0%
GGAATACATACGATTGATCA+TGG - chr4_4:46242806-46242825 None:intergenic 35.0%
AGATACAAAAAAACGCAGAC+AGG - chr4_4:46242827-46242846 None:intergenic 35.0%
TTAAACAGAAAGCAAGGTCA+AGG - chr4_4:46242890-46242909 None:intergenic 35.0%
! TTCTCTAAAAACAAGGGAAG+GGG - chr4_4:46243157-46243176 None:intergenic 35.0%
! CATTCTCTAAAAACAAGGGA+AGG - chr4_4:46243159-46243178 None:intergenic 35.0%
! CCTGACATTCTCTAAAAACA+AGG - chr4_4:46243164-46243183 None:intergenic 35.0%
!!! CCTTGTTTTTAGAGAATGTC+AGG + chr4_4:46243161-46243180 Msa0683610:intron 35.0%
TCTCGAATTATTAACAGTGG+CGG - chr4_4:46243276-46243295 None:intergenic 35.0%
CCTCTATGACACAGTATTTA+TGG - chr4_4:46243425-46243444 None:intergenic 35.0%
CCATAAATACTGTGTCATAG+AGG + chr4_4:46243422-46243441 Msa0683610:intron 35.0%
CATTATGCTTTCAGTTGCTT+GGG + chr4_4:46243510-46243529 Msa0683610:intron 35.0%
! TCCATAGTGATGGAAAAATG+AGG + chr4_4:46243592-46243611 Msa0683610:intron 35.0%
!! ACCTCATTTTTCCATCACTA+TGG - chr4_4:46243596-46243615 None:intergenic 35.0%
TTAGTCGATACAATGCAGTA+TGG + chr4_4:46243864-46243883 Msa0683610:intron 35.0%
TTCTTCTATAACCTCACTCT+TGG + chr4_4:46244022-46244041 Msa0683610:intron 35.0%
TATAGTTTGAACCAGAGGAA+TGG - chr4_4:46244253-46244272 None:intergenic 35.0%
CTTTCTGTACCATTGTTACT+AGG + chr4_4:46244378-46244397 Msa0683610:three_prime_UTR 35.0%
AAATCTGTGCAGAATAATGC+AGG + chr4_4:46244432-46244451 Msa0683610:three_prime_UTR 35.0%
AACTCTTCAAATACAGGCTT+GGG - chr4_4:46244598-46244617 None:intergenic 35.0%
AAACTCTTCAAATACAGGCT+TGG - chr4_4:46244599-46244618 None:intergenic 35.0%
! AGAAGCATAAGTTCCAGTGA+TGG - chr4_4:46241942-46241961 None:intergenic 40.0%
!! GTACTGACTAATTAAGGTGC+CGG - chr4_4:46241966-46241985 None:intergenic 40.0%
GTTGCTTCCTTTGATGCAAT+GGG + chr4_4:46242220-46242239 Msa0683610:CDS 40.0%
TTGCTTCCTTTGATGCAATG+GGG + chr4_4:46242221-46242240 Msa0683610:CDS 40.0%
! ACTTTTCTTGCGTGGAGTAT+AGG + chr4_4:46242577-46242596 Msa0683610:CDS 40.0%
! TGATAAGCAGTGTTGGAGTT+AGG + chr4_4:46242946-46242965 Msa0683610:intron 40.0%
TGCTTATACCCTATGAAGCA+CGG + chr4_4:46243227-46243246 Msa0683610:intron 40.0%
GCATTATGCTTTCAGTTGCT+TGG + chr4_4:46243509-46243528 Msa0683610:intron 40.0%
CTGATATAGGTGATCCATGA+AGG - chr4_4:46243543-46243562 None:intergenic 40.0%
CTTCATGGATCACCTATATC+AGG + chr4_4:46243541-46243560 Msa0683610:intron 40.0%
CATATGAACTCACTTTCTCC+AGG - chr4_4:46243730-46243749 None:intergenic 40.0%
ACTAAATGGGAGGCTTGAAA+AGG - chr4_4:46243942-46243961 None:intergenic 40.0%
TGAGTCAATTTCCAAGAGTG+AGG - chr4_4:46244036-46244055 None:intergenic 40.0%
! CCTATGCTCTTTTCTTGTCA+CGG - chr4_4:46244318-46244337 None:intergenic 40.0%
ACACTTTGGCCTAGTAACAA+TGG - chr4_4:46244390-46244409 None:intergenic 40.0%
CTGCACAGATTTCTACCTTA+TGG - chr4_4:46244424-46244443 None:intergenic 40.0%
ACTCTTCAAATACAGGCTTG+GGG - chr4_4:46244597-46244616 None:intergenic 40.0%
CCACTGCTACCCTAAATATA+AGG - chr4_4:46244758-46244777 None:intergenic 40.0%
! CCTTATATTTAGGGTAGCAG+TGG + chr4_4:46244755-46244774 Msa0683610:three_prime_UTR 40.0%
AACTTTGATTCATTGGGGGG+AGG - chr4_4:46241726-46241745 None:intergenic 45.0%
GAAGAGAGGAGAGAATCCAT+TGG + chr4_4:46241750-46241769 Msa0683610:five_prime_UTR 45.0%
AGCATAAGTTCCAGTGATGG+AGG - chr4_4:46241939-46241958 None:intergenic 45.0%
ACTGGAACTTATGCTTCTGC+CGG + chr4_4:46241944-46241963 Msa0683610:CDS 45.0%
!! GAAGTTATACACGGTGCCAT+TGG + chr4_4:46242100-46242119 Msa0683610:CDS 45.0%
!! TTATACACGGTGCCATTGGT+AGG + chr4_4:46242104-46242123 Msa0683610:intron 45.0%
CGTTGCTTCCTTTGATGCAA+TGG + chr4_4:46242219-46242238 Msa0683610:CDS 45.0%
TTTGGTTGAGTGCTTTCTCC+AGG + chr4_4:46242528-46242547 Msa0683610:intron 45.0%
TAAAAACGGGAGGTAACTCC+TGG - chr4_4:46242555-46242574 None:intergenic 45.0%
GAAATCAATCGCAGAACGCT+AGG - chr4_4:46243093-46243112 None:intergenic 45.0%
CAAGGGAAGGGGTTTGTAAA+GGG - chr4_4:46243146-46243165 None:intergenic 45.0%
ACAAGGGAAGGGGTTTGTAA+AGG - chr4_4:46243147-46243166 None:intergenic 45.0%
TACCCTATGAAGCACGGATA+CGG + chr4_4:46243233-46243252 Msa0683610:intron 45.0%
AATGAAGCACGGATACTCCT+CGG - chr4_4:46243357-46243376 None:intergenic 45.0%
! TGCAGTATGGTTGATGTACC+AGG + chr4_4:46243877-46243896 Msa0683610:intron 45.0%
!! CCTTTATAATTGGAAGCGCC+TGG - chr4_4:46243898-46243917 None:intergenic 45.0%
CCAGGCGCTTCCAATTATAA+AGG + chr4_4:46243895-46243914 Msa0683610:intron 45.0%
ATGCTTCATTTCTCTCGAGC+AGG + chr4_4:46244210-46244229 Msa0683610:intron 45.0%
GCAGGTATAGTTTGAACCAG+AGG - chr4_4:46244258-46244277 None:intergenic 45.0%
ACCTGCATTTGTTCAAGCAG+CGG + chr4_4:46244272-46244291 Msa0683610:CDS 45.0%
! CCGTGACAAGAAAAGAGCAT+AGG + chr4_4:46244315-46244334 Msa0683610:CDS 45.0%
TTTGATTCATTGGGGGGAGG+TGG - chr4_4:46241723-46241742 None:intergenic 50.0%
! AGTTCCAGTGATGGAGGAAG+TGG - chr4_4:46241933-46241952 None:intergenic 50.0%
CTTCCTTTGATGCAATGGGG+AGG + chr4_4:46242224-46242243 Msa0683610:CDS 50.0%
CTTCCTCCCCATTGCATCAA+AGG - chr4_4:46242230-46242249 None:intergenic 50.0%
CTTTGATGCAATGGGGAGGA+AGG + chr4_4:46242228-46242247 Msa0683610:CDS 50.0%
CACTATACTGTCGGAGACGT+AGG + chr4_4:46242764-46242783 Msa0683610:intron 50.0%
GTCCGTATCCGTGCTTCATA+GGG - chr4_4:46243238-46243257 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAT+AGG - chr4_4:46243239-46243258 None:intergenic 50.0%
ATGAAGCACGGATACGGACA+TGG + chr4_4:46243239-46243258 Msa0683610:intron 50.0%
TATGTGACATGTCCGACACC+AGG + chr4_4:46243320-46243339 Msa0683610:intron 50.0%
GCTTGGGAAACTGTCCTTCA+TGG + chr4_4:46243526-46243545 Msa0683610:intron 50.0%
!! TATCCTGTGGGAGTGTTTCC+TGG + chr4_4:46243709-46243728 Msa0683610:intron 50.0%
CTCTCCACTTCCTCCATCAC+TGG + chr4_4:46241926-46241945 Msa0683610:CDS 55.0%
! ATTTCAGGACTGGTGCCGAG+CGG + chr4_4:46242194-46242213 Msa0683610:intron 55.0%
AAAGGAAGCAACGCTCCGCT+CGG - chr4_4:46242212-46242231 None:intergenic 55.0%
TGAGTGCTTTCTCCAGGTCC+AGG + chr4_4:46242534-46242553 Msa0683610:intron 55.0%
TCTTGCGTGGAGTATAGGCG+AGG + chr4_4:46242582-46242601 Msa0683610:CDS 55.0%
GTCGGAGACGTAGGCACAAT+TGG + chr4_4:46242773-46242792 Msa0683610:intron 55.0%
GATTAGGCGTGTCCTGGTGT+CGG - chr4_4:46243335-46243354 None:intergenic 55.0%
GCACGGATACTCCTCGGATT+AGG - chr4_4:46243351-46243370 None:intergenic 55.0%
TCTCCAGGAAACACTCCCAC+AGG - chr4_4:46243715-46243734 None:intergenic 55.0%
GCCGCTGCTTGAACAAATGC+AGG - chr4_4:46244276-46244295 None:intergenic 55.0%
ATACAGGCTTGGGGTGACAC+AGG - chr4_4:46244588-46244607 None:intergenic 55.0%
ACCAGGACACGCCTAATCCG+AGG + chr4_4:46243337-46243356 Msa0683610:intron 60.0%
! TCCTCGGATTAGGCGTGTCC+TGG - chr4_4:46243341-46243360 None:intergenic 60.0%
CGGGAGGTAACTCCTGGACC+TGG - chr4_4:46242549-46242568 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 46241707 46244778 46241707 ID=Msa0683610;Name=Msa0683610
chr4_4 mRNA 46241707 46244778 46241707 ID=Msa0683610-mRNA-1;Parent=Msa0683610;Name=Msa0683610-mRNA-1;_AED=0.18;_eAED=0.18;_QI=123|0.6|0.66|1|1|1|6|442|183
chr4_4 exon 46241707 46241977 46241707 ID=Msa0683610-mRNA-1:exon:11409;Parent=Msa0683610-mRNA-1
chr4_4 exon 46242074 46242121 46242074 ID=Msa0683610-mRNA-1:exon:11410;Parent=Msa0683610-mRNA-1
chr4_4 exon 46242201 46242316 46242201 ID=Msa0683610-mRNA-1:exon:11411;Parent=Msa0683610-mRNA-1
chr4_4 exon 46242550 46242603 46242550 ID=Msa0683610-mRNA-1:exon:11412;Parent=Msa0683610-mRNA-1
chr4_4 exon 46243899 46243979 46243899 ID=Msa0683610-mRNA-1:exon:11413;Parent=Msa0683610-mRNA-1
chr4_4 exon 46244232 46244778 46244232 ID=Msa0683610-mRNA-1:exon:11414;Parent=Msa0683610-mRNA-1
chr4_4 five_prime_UTR 46241707 46241829 46241707 ID=Msa0683610-mRNA-1:five_prime_utr;Parent=Msa0683610-mRNA-1
chr4_4 CDS 46241830 46241977 46241830 ID=Msa0683610-mRNA-1:cds;Parent=Msa0683610-mRNA-1
chr4_4 CDS 46242074 46242121 46242074 ID=Msa0683610-mRNA-1:cds;Parent=Msa0683610-mRNA-1
chr4_4 CDS 46242201 46242316 46242201 ID=Msa0683610-mRNA-1:cds;Parent=Msa0683610-mRNA-1
chr4_4 CDS 46242550 46242603 46242550 ID=Msa0683610-mRNA-1:cds;Parent=Msa0683610-mRNA-1
chr4_4 CDS 46243899 46243979 46243899 ID=Msa0683610-mRNA-1:cds;Parent=Msa0683610-mRNA-1
chr4_4 CDS 46244232 46244336 46244232 ID=Msa0683610-mRNA-1:cds;Parent=Msa0683610-mRNA-1
chr4_4 three_prime_UTR 46244337 46244778 46244337 ID=Msa0683610-mRNA-1:three_prime_utr;Parent=Msa0683610-mRNA-1
Gene Sequence

>Msa0683610

ATGGCTCTCAAACTATCAACACTTTATCTCCTTGCTTACAACTCTTTTCAAGCAATTGGATGGTTCGTATCATTAATCATCATTTTGTACAATCTTCTCTCCACTTCCTCCATCACTGGAACTTATGCTTCTGCCGGCACCTTAATTAGCTTTCTGCAATGTGCTGCATTCTTAGAAGTTATACACGGTGCCATTGGACTGGTGCCGAGCGGAGCGTTGCTTCCTTTGATGCAATGGGGAGGAAGGACTCACTTTGTCCTTGCCATTGTTAATGGAATTCATGAGGTTCCATTCTATTATATGGATATTGCCGTCCAGGAGTTACCTCCCGTTTTTATCACTTTTCTTGCGTGGAGTATAGGCGAGGCGCTTCCAATTATAAAGGAGAAGAATATCTATGCAGATTCCTTTTCAAGCCTCCCATTTAGTTATTATGATTTCCTTAAGGTCCTAATTATAGTTTATCCATTCCTCTGGTTCAAACTATACCTGCATTTGTTCAAGCAGCGGCGTTCAAAACTTTATAAACGCCGTGACAAGAAAAGAGCATAG

Protein sequence

>Msa0683610

MALKLSTLYLLAYNSFQAIGWFVSLIIILYNLLSTSSITGTYASAGTLISFLQCAAFLEVIHGAIGLVPSGALLPLMQWGGRTHFVLAIVNGIHEVPFYYMDIAVQELPPVFITFLAWSIGEALPIIKEKNIYADSFSSLPFSYYDFLKVLIIVYPFLWFKLYLHLFKQRRSKLYKRRDKKRA*