AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606180 MtrunA17_Chr4g0035691 96.911 259 8 0 222 480 19 277 0.0 514
Msa0606180 MtrunA17_Chr4g0035681 89.610 231 18 4 1 227 1 229 9.99e-143 408
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606180 AT2G21370.1 72.104 423 118 0 56 478 53 475 0.0 649
Msa0606180 AT2G21370.2 73.947 380 99 0 99 478 3 382 0.0 596
Msa0606180 AT2G21370.4 72.905 358 97 0 56 413 53 410 0.0 556
Msa0606180 AT2G21370.3 75.238 315 78 0 99 413 3 317 5.57e-179 504

Find 120 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATACTTGCATGGAATTT+TGG 0.172318 4_2:+52311237 Msa0606180:CDS
CTTATTAACTACAATTAATT+AGG 0.186545 4_2:+52312269 Msa0606180:three_prime_UTR
GCGCAGAATGTTCCTGAAAA+TGG 0.227014 4_2:+52306990 None:intergenic
GAGGAACTTATAAATAAATT+TGG 0.234194 4_2:+52308523 Msa0606180:CDS
AACTCCAATTGCTTGTTTAA+AGG 0.241909 4_2:+52308501 Msa0606180:CDS
AGAGACATTGATACTGTTCT+TGG 0.256310 4_2:-52307281 None:intergenic
AGAATCGAGGATTCTCGTTT+TGG 0.275984 4_2:+52309625 Msa0606180:CDS
CCTGAAGTTCCCTTATCCTT+TGG 0.278580 4_2:+52307058 Msa0606180:five_prime_UTR
TGATTCTTAGGTTACATCAT+TGG 0.316523 4_2:+52309567 Msa0606180:intron
GGGTTGGACTTTGGCACTTC+CGG 0.317976 4_2:+52307359 Msa0606180:CDS
CTGAAGTTCCCTTATCCTTT+GGG 0.319442 4_2:+52307059 Msa0606180:five_prime_UTR
AAACAAGCAATTGGAGTTCC+AGG 0.322393 4_2:-52308496 None:intergenic
GTCATCGCCTTGATGATAAA+TGG 0.338306 4_2:+52309656 Msa0606180:CDS
CAGTACCTTGGAGCCAAATC+TGG 0.341368 4_2:-52309838 None:intergenic
GTTGGTGGTGCTTCAAATAC+TGG 0.348663 4_2:+52309682 Msa0606180:CDS
GGAAATCTTTCACCAGCTTT+TGG 0.354679 4_2:-52309805 None:intergenic
TCTTATCTTCCCAAAGGATA+AGG 0.357228 4_2:-52307068 None:intergenic
GATTCTTAGGTTACATCATT+GGG 0.360067 4_2:+52309568 Msa0606180:intron
ATTGTGTCGATTTCTATTGA+TGG 0.365963 4_2:+52307720 Msa0606180:CDS
TCCTCCTTTAAACAAGCAAT+TGG 0.368678 4_2:-52308505 None:intergenic
TCCGGTTGCAGATCCAGATT+TGG 0.369397 4_2:+52309825 Msa0606180:CDS
ATATGTGAAAGATGTTAAAA+TGG 0.372712 4_2:-52307130 None:intergenic
GACGGTAAAAGATGAGAATA+TGG 0.373140 4_2:-52308463 None:intergenic
TGGCAGAGGATAGTAGTCTA+AGG 0.378260 4_2:-52309785 None:intergenic
CTTATCTTCCCAAAGGATAA+GGG 0.378527 4_2:-52307067 None:intergenic
AAAAGCTGGTGAAAGATTTC+CGG 0.379132 4_2:+52309807 Msa0606180:CDS
CCAAAGGATAAGGGAACTTC+AGG 0.380729 4_2:-52307058 None:intergenic
CCTTTGGGAAGATAAGAAAA+TGG 0.381391 4_2:+52307074 Msa0606180:exon
GATGGATATGAGTCCACTTC+AGG 0.389322 4_2:-52308424 None:intergenic
TGGCTTCTTCATGGAAAGCT+TGG 0.398484 4_2:+52308249 Msa0606180:CDS
CAACTACTATCATTGTTGAT+AGG 0.411174 4_2:+52307751 Msa0606180:CDS
TGCATACGGAACTGCATTGT+TGG 0.411658 4_2:+52312089 Msa0606180:CDS
AGCTATACTGTCAGTGGTTC+CGG 0.412191 4_2:-52309102 None:intergenic
CGCAGAATGTTCCTGAAAAT+GGG 0.417963 4_2:+52306991 None:intergenic
GATGTTAAAATGGTGCTTGC+TGG 0.419025 4_2:-52307120 None:intergenic
TTCCGTATGCAGCTTCTGTT+TGG 0.420105 4_2:-52312077 None:intergenic
TAGTTAATAAGTAGTTAAGT+TGG 0.421232 4_2:-52312257 None:intergenic
GGAATCCATTGCACGTATAG+AGG 0.422783 4_2:+52311258 Msa0606180:CDS
GGAAACAGGTTATTACTGTT+AGG 0.425830 4_2:+52307251 Msa0606180:intron
TGGTGGTAAAGTTGCGGACT+GGG 0.426221 4_2:-52307027 None:intergenic
TTACCGTCCGTTCTTGCACC+TGG 0.429144 4_2:+52308478 Msa0606180:CDS
GCAGAGCATACTGTATGGTT+TGG 0.432761 4_2:-52308132 None:intergenic
AACTGCATTGTTGGCAATGA+AGG 0.435765 4_2:+52312098 Msa0606180:CDS
GGGAACTTCAGGAACAATAA+TGG 0.440452 4_2:-52307047 None:intergenic
CTTGATGATAAATGGCTTGT+TGG 0.440900 4_2:+52309664 Msa0606180:CDS
TTTACAGCAGGTAGTGCATC+AGG 0.446244 4_2:-52308096 None:intergenic
GAAAATGATACCGAGTATAG+TGG 0.453765 4_2:-52307443 None:intergenic
CTGTATCTCGGGTTGGACTT+TGG 0.462776 4_2:+52307350 Msa0606180:CDS
TGTTATTGCACCAAGCAGAT+TGG 0.463073 4_2:+52308220 Msa0606180:CDS
GCCAAATCTGGATCTGCAAC+CGG 0.465717 4_2:-52309826 None:intergenic
GAATGGAGAGTCACATGATT+GGG 0.467158 4_2:+52307632 Msa0606180:intron
ATCTATTAGATACGATATCT+AGG 0.480531 4_2:-52312201 None:intergenic
TATGGGTTGCTAAAGGATCT+AGG 0.488772 4_2:+52311949 Msa0606180:CDS
GCCACAAAAGCCAATCTGCT+TGG 0.490266 4_2:-52308230 None:intergenic
CAGGTGAAAGGCTGTATCTC+GGG 0.490454 4_2:+52307339 Msa0606180:CDS
AGAATGGAGAGTCACATGAT+TGG 0.492505 4_2:+52307631 Msa0606180:intron
CAACTCTCATTGTAAAGTAA+AGG 0.495280 4_2:-52308072 None:intergenic
TGATGCATTTGCCCTTAAGT+TGG 0.497875 4_2:-52312144 None:intergenic
ATGTGTTTGCGAAGGTTAAG+TGG 0.500385 4_2:-52307699 None:intergenic
TACTATCCTCTGCCAAAAGC+TGG 0.504038 4_2:+52309793 Msa0606180:CDS
GATGATAAATGGCTTGTTGG+TGG 0.509846 4_2:+52309667 Msa0606180:CDS
TTCACATATAGTCGAAAACT+TGG 0.512881 4_2:+52307144 Msa0606180:CDS
TGATACCGAGTATAGTGGAT+AGG 0.519047 4_2:-52307438 None:intergenic
GCAGGTGAAAGGCTGTATCT+CGG 0.519687 4_2:+52307338 Msa0606180:CDS
GTTTGGTTTGCACGACTCAC+AGG 0.521003 4_2:-52312060 None:intergenic
TCTTACCTCTATACGTGCAA+TGG 0.527339 4_2:-52311263 None:intergenic
TTTGCTATCATTGACATTGG+TGG 0.527618 4_2:+52307389 Msa0606180:CDS
TAAAATGGTGCTTGCTGGGT+GGG 0.528829 4_2:-52307115 None:intergenic
TCCAATTGCTTGTTTAAAGG+AGG 0.535092 4_2:+52308504 Msa0606180:CDS
ATGGTGGTAAAGTTGCGGAC+TGG 0.536305 4_2:-52307028 None:intergenic
AAGATACGAGAAAGGGTGCT+TGG 0.539627 4_2:+52312033 Msa0606180:CDS
AGATTATAATAATGCTCTGA+AGG 0.544841 4_2:+52308278 Msa0606180:CDS
GCAGCTCGTGCTACTCAACC+TGG 0.545958 4_2:+52309134 Msa0606180:CDS
TGGAGTTCCAGGTGCAAGAA+CGG 0.546664 4_2:-52308485 None:intergenic
GGTTGAGAGACTAGCCATGA+TGG 0.547884 4_2:-52308442 None:intergenic
GATACCGAGTATAGTGGATA+GGG 0.550490 4_2:-52307437 None:intergenic
CAGTTTCTCTAGTTGATCAT+CGG 0.550710 4_2:-52309731 None:intergenic
AAAGGGATATGGGTTGCTAA+AGG 0.551626 4_2:+52311942 Msa0606180:CDS
CAACAAGCCATTTATCATCA+AGG 0.552580 4_2:-52309663 None:intergenic
AGTGGACAAAGATACGAGAA+AGG 0.554823 4_2:+52312025 Msa0606180:CDS
TGGATAGGGTCGCTTTGCCT+CGG 0.555768 4_2:-52307423 None:intergenic
ATGTTAAAATGGTGCTTGCT+GGG 0.557496 4_2:-52307119 None:intergenic
CAGATCCAGATTTGGCTCCA+AGG 0.557605 4_2:+52309833 Msa0606180:CDS
CACATGATTGGGTACGCTCG+TGG 0.559882 4_2:+52307643 Msa0606180:CDS
AATGATGTTGAATACTTGCA+TGG 0.562603 4_2:+52311229 Msa0606180:CDS
AAGTGGACTCATATCCATCA+TGG 0.572768 4_2:+52308428 Msa0606180:CDS
AAGGAGTGTGTTGTATGCAC+CGG 0.573060 4_2:+52309083 Msa0606180:CDS
TGAAAGGCTGTATCTCGGGT+TGG 0.578609 4_2:+52307343 Msa0606180:CDS
CTCTGTGTAAGCTCGTGTCA+TGG 0.583558 4_2:+52308163 Msa0606180:CDS
TGGGAAGATAAGAAAATGGT+AGG 0.584118 4_2:+52307078 Msa0606180:exon
GAGCATACTGTATGGTTTGG+AGG 0.585331 4_2:-52308129 None:intergenic
AGATTTGCTATCATTGACAT+TGG 0.585612 4_2:+52307386 Msa0606180:CDS
AACCAAACAGAAGCTGCATA+CGG 0.586418 4_2:+52312075 Msa0606180:CDS
TGTGTTTGCGAAGGTTAAGT+GGG 0.587553 4_2:-52307698 None:intergenic
TGTATGGTTTGGAGGTGCAA+TGG 0.588665 4_2:-52308121 None:intergenic
GTAGTGTGGGAGCAGGTGAA+AGG 0.597368 4_2:+52307327 Msa0606180:CDS
GTCTAAGGAAGATATTTGTG+AGG 0.598899 4_2:-52309770 None:intergenic
TTAAAATGGTGCTTGCTGGG+TGG 0.598985 4_2:-52307116 None:intergenic
ACGATGCAGAGCATACTGTA+TGG 0.600239 4_2:-52308137 None:intergenic
AATGATAGCAAATCTTGCAC+CGG 0.609625 4_2:-52307378 None:intergenic
CAATAATGGTGGTAAAGTTG+CGG 0.609824 4_2:-52307033 None:intergenic
ATGTTGTACTGCAGTGACAC+AGG 0.614244 4_2:+52308033 Msa0606180:intron
TGTGAAAACTTGATCCACTA+CGG 0.615420 4_2:-52311977 None:intergenic
TCTAAGGAAGATATTTGTGA+GGG 0.615510 4_2:-52309769 None:intergenic
TCGACACAATGTGTTTGCGA+AGG 0.617735 4_2:-52307707 None:intergenic
GGATCTAGGTGCAACCGTAG+TGG 0.620019 4_2:+52311963 Msa0606180:CDS
AAACGCAGCTATACTGTCAG+TGG 0.632976 4_2:-52309108 None:intergenic
GTGACACAGGAGAACCGTTG+TGG 0.635099 4_2:+52308046 Msa0606180:intron
GCGACCCTATCCACTATACT+CGG 0.636506 4_2:+52307433 Msa0606180:CDS
GTGTCATGGTGGAATCGTGA+TGG 0.637856 4_2:+52308177 Msa0606180:CDS
ACTGCATTGTTGGCAATGAA+GGG 0.646066 4_2:+52312099 Msa0606180:CDS
TGGTGGCACAATTCAAGCCG+AGG 0.648456 4_2:+52307406 Msa0606180:CDS
GTGGACAAAGATACGAGAAA+GGG 0.650371 4_2:+52312026 Msa0606180:CDS
GTTCCAGGTGCAAGAACGGA+CGG 0.651034 4_2:-52308481 None:intergenic
ATTAAGCAACTCAAGAATCG+AGG 0.655962 4_2:+52309612 Msa0606180:CDS
GGTTGGGTATGATCCTGAAG+TGG 0.669877 4_2:+52308411 Msa0606180:intron
TAAAGTAAAGGTCTCCACAA+CGG 0.675201 4_2:-52308060 None:intergenic
AACTTCAGGAACAATAATGG+TGG 0.680820 4_2:-52307044 None:intergenic
TGTGTAAGCTCGTGTCATGG+TGG 0.682794 4_2:+52308166 Msa0606180:CDS
GGTGGTGCTTCAAATACTGG+AGG 0.715567 4_2:+52309685 Msa0606180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAGATTTATTTTAATA+CGG + chr4_2:52310133-52310152 Msa0606180:intron 10.0%
!! CATGAATAAATAATTAAAGA+AGG - chr4_2:52309188-52309207 None:intergenic 15.0%
!!! AAATTAAGATTTTCAAAAGA+TGG + chr4_2:52309231-52309250 Msa0606180:intron 15.0%
!!! AGAGCATTTAAATTATATTT+TGG - chr4_2:52309389-52309408 None:intergenic 15.0%
!! TATACAAGCTAATATTATAA+GGG - chr4_2:52309916-52309935 None:intergenic 15.0%
!! TTTATAAAATTAACTCACTT+GGG + chr4_2:52309942-52309961 Msa0606180:intron 15.0%
!!! ATCTAGATTTATTTTAATAC+GGG + chr4_2:52310134-52310153 Msa0606180:intron 15.0%
!! AATAAAAAACTATTATTGAC+AGG - chr4_2:52310180-52310199 None:intergenic 15.0%
!!! AATAGTATTCTAAAAACAAA+AGG - chr4_2:52310203-52310222 None:intergenic 15.0%
!! ATTAAATCTGATTCTTTATA+TGG - chr4_2:52311031-52311050 None:intergenic 15.0%
!!! AATTTTACTTCATATAATGA+TGG - chr4_2:52311313-52311332 None:intergenic 15.0%
!! TGTAAAAAAAAAAAATGAGT+TGG - chr4_2:52311828-52311847 None:intergenic 15.0%
!! CTTATTAACTACAATTAATT+AGG + chr4_2:52312269-52312288 Msa0606180:three_prime_UTR 15.0%
!! ATATGTGAAAGATGTTAAAA+TGG - chr4_2:52307133-52307152 None:intergenic 20.0%
!!! TAATGTGATTGAGAATATTT+TGG + chr4_2:52307511-52307530 Msa0606180:intron 20.0%
!! AGTACAAAATATTGTCAAAT+TGG + chr4_2:52307886-52307905 Msa0606180:intron 20.0%
!! GTACAAAATATTGTCAAATT+GGG + chr4_2:52307887-52307906 Msa0606180:intron 20.0%
!! TACAAAATATTGTCAAATTG+GGG + chr4_2:52307888-52307907 Msa0606180:intron 20.0%
!!! TATTATCTATTTTTCTAGCT+AGG + chr4_2:52308323-52308342 Msa0606180:intron 20.0%
!! TGCAAAACATAAAAAAATTG+TGG - chr4_2:52308391-52308410 None:intergenic 20.0%
!!! ACAATTTTTTTATGTTTTGC+AGG + chr4_2:52308390-52308409 Msa0606180:intron 20.0%
!! GAGGAACTTATAAATAAATT+TGG + chr4_2:52308523-52308542 Msa0606180:CDS 20.0%
!! TAAAAAGTTTATATGTGAGT+TGG - chr4_2:52308710-52308729 None:intergenic 20.0%
!! GAAATTGAAAATCATATACA+CGG + chr4_2:52309037-52309056 Msa0606180:intron 20.0%
!! TTATTTATTCATGATCTGTT+AGG + chr4_2:52309195-52309214 Msa0606180:intron 20.0%
!! ATCTTATTATAAATACAGTG+TGG - chr4_2:52309293-52309312 None:intergenic 20.0%
!! ACTGTATTTATAATAAGATC+AGG + chr4_2:52309294-52309313 Msa0606180:intron 20.0%
!! AATATAATTTAAATGCTCTG+TGG + chr4_2:52309390-52309409 Msa0606180:intron 20.0%
!! CTTATTAATTCAAAACCTTA+AGG + chr4_2:52309477-52309496 Msa0606180:intron 20.0%
!! CTATACAAGCTAATATTATA+AGG - chr4_2:52309917-52309936 None:intergenic 20.0%
!!! GTGAGTTAATTTTATAAAGA+AGG - chr4_2:52309940-52309959 None:intergenic 20.0%
!! CTTTATAAAATTAACTCACT+TGG + chr4_2:52309941-52309960 Msa0606180:intron 20.0%
!!! TTAGAATACTATTTTTTCTC+CGG + chr4_2:52310210-52310229 Msa0606180:intron 20.0%
!! TTGTAGATTTAATGAAATAC+CGG - chr4_2:52310232-52310251 None:intergenic 20.0%
!!! CTACTACTATTTTAGAATTT+AGG + chr4_2:52310431-52310450 Msa0606180:intron 20.0%
!! AATAAATATACTCCAATGTA+AGG - chr4_2:52310815-52310834 None:intergenic 20.0%
!! TACATTGGAGTATATTTATT+AGG + chr4_2:52310815-52310834 Msa0606180:intron 20.0%
!!! ATTTATTAGGAGCTTTAAAA+AGG + chr4_2:52310765-52310784 Msa0606180:intron 20.0%
!!! TATTTCCTTTTCTTTCTAAA+AGG - chr4_2:52310911-52310930 None:intergenic 20.0%
!! TAAAGAATCAGATTTAATGT+TGG + chr4_2:52311033-52311052 Msa0606180:intron 20.0%
!!! TTATTTTGCATAATGACTAA+TGG + chr4_2:52311168-52311187 Msa0606180:intron 20.0%
!! TCCAATAAAGTTTATGAAAA+TGG - chr4_2:52311534-52311553 None:intergenic 20.0%
!!! TGAGTTGAACAATAAATTTA+AGG - chr4_2:52311719-52311738 None:intergenic 20.0%
!!! TATTTTGCTCTTACATTTTT+TGG + chr4_2:52311860-52311879 Msa0606180:intron 20.0%
!! AGTAGTAATAAAAATTAGGA+TGG + chr4_2:52312174-52312193 Msa0606180:three_prime_UTR 20.0%
!! TAGTTAATAAGTAGTTAAGT+TGG - chr4_2:52312260-52312279 None:intergenic 20.0%
!! AAAAATGGTGTCAAAATAAG+TGG - chr4_2:52307205-52307224 None:intergenic 25.0%
!! GTAGCATGAAAGTATAAAAA+TGG - chr4_2:52307220-52307239 None:intergenic 25.0%
! AGATAACAAAAAAAGTAGTG+TGG + chr4_2:52307313-52307332 Msa0606180:CDS 25.0%
! GATAACAAAAAAAGTAGTGT+GGG + chr4_2:52307314-52307333 Msa0606180:CDS 25.0%
!!! TTGACAATGTTCTAAAATTG+TGG + chr4_2:52307549-52307568 Msa0606180:intron 25.0%
!! ATTGTATTTGAATTCTGAAG+TGG + chr4_2:52308008-52308027 Msa0606180:intron 25.0%
!!! TTGTATTTGAATTCTGAAGT+GGG + chr4_2:52308009-52308028 Msa0606180:intron 25.0%
! AGATTATAATAATGCTCTGA+AGG + chr4_2:52308278-52308297 Msa0606180:CDS 25.0%
!!! TTTTTTTATGTTTTGCAGGT+TGG + chr4_2:52308394-52308413 Msa0606180:intron 25.0%
!!! TTTTTTATGTTTTGCAGGTT+GGG + chr4_2:52308395-52308414 Msa0606180:intron 25.0%
! AAGCATTATCCCTATAAAAT+GGG - chr4_2:52308779-52308798 None:intergenic 25.0%
! TAAGCATTATCCCTATAAAA+TGG - chr4_2:52308780-52308799 None:intergenic 25.0%
! AGGGATAATGCTTATTAATA+TGG + chr4_2:52308786-52308805 Msa0606180:intron 25.0%
! GAAAGAAGAATATTGAGATA+AGG - chr4_2:52308843-52308862 None:intergenic 25.0%
! TCTCAATATTCTTCTTTCTT+TGG + chr4_2:52308845-52308864 Msa0606180:intron 25.0%
!!! CAAAGATTTTAACCAAGTTA+AGG - chr4_2:52309010-52309029 None:intergenic 25.0%
! CCATAGCAATCATATATATT+AGG - chr4_2:52309332-52309351 None:intergenic 25.0%
! CCTAATATATATGATTGCTA+TGG + chr4_2:52309329-52309348 Msa0606180:intron 25.0%
!!! AAATTATATTTTGGTAGACC+AGG - chr4_2:52309380-52309399 None:intergenic 25.0%
! ACATTATGAGAAACAAAACA+AGG - chr4_2:52309546-52309565 None:intergenic 25.0%
! TCTCATAATGTTTGATTCTT+AGG + chr4_2:52309555-52309574 Msa0606180:intron 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG - chr4_2:52310109-52310128 None:intergenic 25.0%
! ATCTACAAATCATCATGTTA+AGG + chr4_2:52310244-52310263 Msa0606180:intron 25.0%
! CAAAATTCTAAACTAAGCAT+TGG - chr4_2:52310357-52310376 None:intergenic 25.0%
!!! CAATGCTTAGTTTAGAATTT+TGG + chr4_2:52310355-52310374 Msa0606180:intron 25.0%
! CAAGAACAAACTTGAATATA+CGG - chr4_2:52310587-52310606 None:intergenic 25.0%
! AGTATTTCTTAACTACCTAA+CGG - chr4_2:52310715-52310734 None:intergenic 25.0%
! GATATCTTCAACAAAAGAAA+AGG + chr4_2:52310737-52310756 Msa0606180:intron 25.0%
! AGAAAAGGACAGTATTTATT+AGG + chr4_2:52310752-52310771 Msa0606180:intron 25.0%
!!! ATTAGGAGCTTTAAAATCAT+TGG + chr4_2:52310769-52310788 Msa0606180:intron 25.0%
! GAAATAAAAAATGTCCCAAA+AGG + chr4_2:52310925-52310944 Msa0606180:intron 25.0%
!! AAATGTCAAATAGTCCTTTT+GGG - chr4_2:52310942-52310961 None:intergenic 25.0%
! AAAATAAAAAGAGTCTTGGT+TGG - chr4_2:52311155-52311174 None:intergenic 25.0%
! ATGCAAAATAAAAAGAGTCT+TGG - chr4_2:52311159-52311178 None:intergenic 25.0%
!!! ACTAATGGAATTTGATTTTC+TGG + chr4_2:52311183-52311202 Msa0606180:intron 25.0%
!!! CTAATGGAATTTGATTTTCT+GGG + chr4_2:52311184-52311203 Msa0606180:intron 25.0%
!! AAGTATTCAACATCATTTTC+TGG - chr4_2:52311226-52311245 None:intergenic 25.0%
!!! GCCATTTTCATAAACTTTAT+TGG + chr4_2:52311530-52311549 Msa0606180:intron 25.0%
!!! TGTTTTCAGCTTATTTTCAT+TGG - chr4_2:52311560-52311579 None:intergenic 25.0%
! TAAGTTATGTGAGACTATTT+GGG - chr4_2:52311615-52311634 None:intergenic 25.0%
! ATAAGTTATGTGAGACTATT+TGG - chr4_2:52311616-52311635 None:intergenic 25.0%
!! CTCTTGAAATATGGTATTTT+AGG + chr4_2:52311918-52311937 Msa0606180:intron 25.0%
!!! AAATATGGTATTTTAGGCAA+AGG + chr4_2:52311924-52311943 Msa0606180:intron 25.0%
!!! AATATGGTATTTTAGGCAAA+GGG + chr4_2:52311925-52311944 Msa0606180:intron 25.0%
!! AATATTTTGTGACCAACTTA+AGG + chr4_2:52312132-52312151 Msa0606180:exon 25.0%
!! ATATTTTGTGACCAACTTAA+GGG + chr4_2:52312133-52312152 Msa0606180:exon 25.0%
! TCGCAGTAGTAATAAAAATT+AGG + chr4_2:52312170-52312189 Msa0606180:three_prime_UTR 25.0%
! ATCTATTAGATACGATATCT+AGG - chr4_2:52312204-52312223 None:intergenic 25.0%
TTCACATATAGTCGAAAACT+TGG + chr4_2:52307144-52307163 Msa0606180:CDS 30.0%
!!! TTCATGCTACTTTTCTTATC+AGG + chr4_2:52307230-52307249 Msa0606180:intron 30.0%
! TACTTTTCTTATCAGGAAAC+AGG + chr4_2:52307237-52307256 Msa0606180:intron 30.0%
GTATCAATGTCTCTCAAAAA+CGG + chr4_2:52307290-52307309 Msa0606180:CDS 30.0%
!! AGATTTGCTATCATTGACAT+TGG + chr4_2:52307386-52307405 Msa0606180:CDS 30.0%
ACAAAAATCTCAGCATACTT+TGG - chr4_2:52307596-52307615 None:intergenic 30.0%
TTTCTCTTGTCTAGAAAGAA+TGG + chr4_2:52307615-52307634 Msa0606180:intron 30.0%
!! ATTGTGTCGATTTCTATTGA+TGG + chr4_2:52307720-52307739 Msa0606180:CDS 30.0%
CAACTACTATCATTGTTGAT+AGG + chr4_2:52307751-52307770 Msa0606180:CDS 30.0%
CACTATTTAACAACACTGAT+TGG - chr4_2:52307801-52307820 None:intergenic 30.0%
! CAATCAGTGTTGTTAAATAG+TGG + chr4_2:52307799-52307818 Msa0606180:intron 30.0%
CAACTCTCATTGTAAAGTAA+AGG - chr4_2:52308075-52308094 None:intergenic 30.0%
! TGTGGATAAATTTTCCAACT+CGG - chr4_2:52308373-52308392 None:intergenic 30.0%
AACTCCAATTGCTTGTTTAA+AGG + chr4_2:52308501-52308520 Msa0606180:CDS 30.0%
GCTTAATATAGTTGTTTGGA+AGG - chr4_2:52308635-52308654 None:intergenic 30.0%
TGGTGCTTAATATAGTTGTT+TGG - chr4_2:52308639-52308658 None:intergenic 30.0%
AACAACTATATTAAGCACCA+CGG + chr4_2:52308639-52308658 Msa0606180:intron 30.0%
! TTTATATGTGAGTTGGCTAT+CGG - chr4_2:52308703-52308722 None:intergenic 30.0%
AGCATTATCCCTATAAAATG+GGG - chr4_2:52308778-52308797 None:intergenic 30.0%
TAAGGTTGCACTATTCAAAT+TGG - chr4_2:52308825-52308844 None:intergenic 30.0%
! TTGTGCATCAATTTTACTTG+TGG - chr4_2:52308931-52308950 None:intergenic 30.0%
TATATATTGCTGTGTTGCAA+TGG + chr4_2:52308973-52308992 Msa0606180:intron 30.0%
!!! TATCCTTTCAGGTTTTCAAA+AGG + chr4_2:52309064-52309083 Msa0606180:intron 30.0%
!! ATCTTAATTTGTCTATCACG+AGG - chr4_2:52309221-52309240 None:intergenic 30.0%
!! ATAAGCTTTGGAGCTTATAT+AGG + chr4_2:52309427-52309446 Msa0606180:intron 30.0%
AATTAATAAGCACCAACCAT+AGG - chr4_2:52309467-52309486 None:intergenic 30.0%
TGATTCTTAGGTTACATCAT+TGG + chr4_2:52309567-52309586 Msa0606180:intron 30.0%
GATTCTTAGGTTACATCATT+GGG + chr4_2:52309568-52309587 Msa0606180:intron 30.0%
TCTAAGGAAGATATTTGTGA+GGG - chr4_2:52309772-52309791 None:intergenic 30.0%
TAAAATTAACTCACTTGGGT+TGG + chr4_2:52309946-52309965 Msa0606180:intron 30.0%
CTTCATGATTTCAACAATGT+GGG - chr4_2:52310311-52310330 None:intergenic 30.0%
ACTTCATGATTTCAACAATG+TGG - chr4_2:52310312-52310331 None:intergenic 30.0%
! TTGGTTATTTCAACAATGTG+AGG - chr4_2:52310338-52310357 None:intergenic 30.0%
!! GCTTAGTTTAGAATTTTGGT+TGG + chr4_2:52310359-52310378 Msa0606180:intron 30.0%
!! CTCATAAGTCAGTTTTGTAA+GGG - chr4_2:52310472-52310491 None:intergenic 30.0%
!! TCTCATAAGTCAGTTTTGTA+AGG - chr4_2:52310473-52310492 None:intergenic 30.0%
CTCACTTATAAACACATTGT+TGG + chr4_2:52310504-52310523 Msa0606180:intron 30.0%
GGATTATATATCTACCAATG+TGG + chr4_2:52310525-52310544 Msa0606180:intron 30.0%
AAGTGTTAAAAGTTCCACAT+TGG - chr4_2:52310542-52310561 None:intergenic 30.0%
! ATTCAAGTTTGTTCTTGATG+AGG + chr4_2:52310590-52310609 Msa0606180:intron 30.0%
! TTGACTTGAGTGACAATATT+AGG + chr4_2:52310664-52310683 Msa0606180:intron 30.0%
! TTCTTTCTAAAAGGCCATTT+GGG - chr4_2:52310902-52310921 None:intergenic 30.0%
! TTTCTTTCTAAAAGGCCATT+TGG - chr4_2:52310903-52310922 None:intergenic 30.0%
!! AATGGCCTTTTAGAAAGAAA+AGG + chr4_2:52310903-52310922 Msa0606180:intron 30.0%
! GAAATGTCAAATAGTCCTTT+TGG - chr4_2:52310943-52310962 None:intergenic 30.0%
TTTCCTTGTCTTTAGTACTT+AGG + chr4_2:52310959-52310978 Msa0606180:intron 30.0%
TTCCTTGTCTTTAGTACTTA+GGG + chr4_2:52310960-52310979 Msa0606180:intron 30.0%
!! ATGTTGGTTCATTTATGTTC+AGG + chr4_2:52311049-52311068 Msa0606180:intron 30.0%
!! TGTTGGTTCATTTATGTTCA+GGG + chr4_2:52311050-52311069 Msa0606180:intron 30.0%
ACAGATAACAGAACCAAATT+TGG - chr4_2:52311082-52311101 None:intergenic 30.0%
! AGTTTGCTTTGATTGTGTTA+TGG - chr4_2:52311114-52311133 None:intergenic 30.0%
AATGATGTTGAATACTTGCA+TGG + chr4_2:52311229-52311248 Msa0606180:CDS 30.0%
! TGAATACTTGCATGGAATTT+TGG + chr4_2:52311237-52311256 Msa0606180:CDS 30.0%
!! ATTGATTTTGTTCCAAGAAC+TGG + chr4_2:52311364-52311383 Msa0606180:intron 30.0%
TTAAGTTAGAAACCAGTTCT+TGG - chr4_2:52311379-52311398 None:intergenic 30.0%
! AAGAACTGGTTTCTAACTTA+AGG + chr4_2:52311378-52311397 Msa0606180:intron 30.0%
TTCTAACTTAAGGCTATGTT+TGG + chr4_2:52311388-52311407 Msa0606180:intron 30.0%
GAACTCATGAAAACAACTTA+CGG - chr4_2:52311591-52311610 None:intergenic 30.0%
TCAAACAAGTCAATCTAAAC+AGG + chr4_2:52311645-52311664 Msa0606180:intron 30.0%
ACTCCAAATTCTAACTTCAT+GGG - chr4_2:52311671-52311690 None:intergenic 30.0%
AACTCCAAATTCTAACTTCA+TGG - chr4_2:52311672-52311691 None:intergenic 30.0%
!! TATTTTAGGCAAAGGGATAT+GGG + chr4_2:52311932-52311951 Msa0606180:intron 30.0%
CAATAATGGTGGTAAAGTTG+CGG - chr4_2:52307036-52307055 None:intergenic 35.0%
AACTTCAGGAACAATAATGG+TGG - chr4_2:52307047-52307066 None:intergenic 35.0%
CTTATCTTCCCAAAGGATAA+GGG - chr4_2:52307070-52307089 None:intergenic 35.0%
TCTTATCTTCCCAAAGGATA+AGG - chr4_2:52307071-52307090 None:intergenic 35.0%
! CCATTTTCTTATCTTCCCAA+AGG - chr4_2:52307077-52307096 None:intergenic 35.0%
! CCTTTGGGAAGATAAGAAAA+TGG + chr4_2:52307074-52307093 Msa0606180:exon 35.0%
TGGGAAGATAAGAAAATGGT+AGG + chr4_2:52307078-52307097 Msa0606180:exon 35.0%
ATGTTAAAATGGTGCTTGCT+GGG - chr4_2:52307122-52307141 None:intergenic 35.0%
GGAAACAGGTTATTACTGTT+AGG + chr4_2:52307251-52307270 Msa0606180:intron 35.0%
AGAGACATTGATACTGTTCT+TGG - chr4_2:52307284-52307303 None:intergenic 35.0%
AATGATAGCAAATCTTGCAC+CGG - chr4_2:52307381-52307400 None:intergenic 35.0%
! TTTGCTATCATTGACATTGG+TGG + chr4_2:52307389-52307408 Msa0606180:CDS 35.0%
GAAAATGATACCGAGTATAG+TGG - chr4_2:52307446-52307465 None:intergenic 35.0%
! GTGTTGTTAAATAGTGGCTA+TGG + chr4_2:52307805-52307824 Msa0606180:intron 35.0%
TAAAGTAAAGGTCTCCACAA+CGG - chr4_2:52308063-52308082 None:intergenic 35.0%
GACGGTAAAAGATGAGAATA+TGG - chr4_2:52308466-52308485 None:intergenic 35.0%
TCCAATTGCTTGTTTAAAGG+AGG + chr4_2:52308504-52308523 Msa0606180:CDS 35.0%
TCCTCCTTTAAACAAGCAAT+TGG - chr4_2:52308508-52308527 None:intergenic 35.0%
! TTATATGTGAGTTGGCTATC+GGG - chr4_2:52308702-52308721 None:intergenic 35.0%
! AAGTTCCAACCCCATTTTAT+AGG + chr4_2:52308766-52308785 Msa0606180:intron 35.0%
! AGTTCCAACCCCATTTTATA+GGG + chr4_2:52308767-52308786 Msa0606180:intron 35.0%
TTATCCCTATAAAATGGGGT+TGG - chr4_2:52308774-52308793 None:intergenic 35.0%
! AATTTTACTTGTGGCACAAC+TGG - chr4_2:52308922-52308941 None:intergenic 35.0%
! GCATTGGATTTTCCTTAACT+TGG + chr4_2:52308995-52309014 Msa0606180:intron 35.0%
!! ACTCCTTTTGAAAACCTGAA+AGG - chr4_2:52309070-52309089 None:intergenic 35.0%
! CAAGAAATTACAGCTTTTCC+AGG - chr4_2:52309155-52309174 None:intergenic 35.0%
GGATGCATTTAAATACAGTG+TGG - chr4_2:52309359-52309378 None:intergenic 35.0%
CACTGTATTTAAATGCATCC+TGG + chr4_2:52309359-52309378 Msa0606180:intron 35.0%
GCATAAAAAGCTATCCACAA+TGG - chr4_2:52309524-52309543 None:intergenic 35.0%
ATTAAGCAACTCAAGAATCG+AGG + chr4_2:52309612-52309631 Msa0606180:CDS 35.0%
CAACAAGCCATTTATCATCA+AGG - chr4_2:52309666-52309685 None:intergenic 35.0%
! CTTGATGATAAATGGCTTGT+TGG + chr4_2:52309664-52309683 Msa0606180:CDS 35.0%
CAGTTTCTCTAGTTGATCAT+CGG - chr4_2:52309734-52309753 None:intergenic 35.0%
GTCTAAGGAAGATATTTGTG+AGG - chr4_2:52309773-52309792 None:intergenic 35.0%
AAAAGCTGGTGAAAGATTTC+CGG + chr4_2:52309807-52309826 Msa0606180:CDS 35.0%
ATATAACGTGAGATGTCAAG+AGG - chr4_2:52310001-52310020 None:intergenic 35.0%
ATCTCACGTTATATTCTCCT+TGG + chr4_2:52310007-52310026 Msa0606180:intron 35.0%
GACAGGATTTCAACTTCATT+TGG - chr4_2:52310163-52310182 None:intergenic 35.0%
ACAACAAGATGTCCAGAATT+GGG - chr4_2:52310404-52310423 None:intergenic 35.0%
TACAACAAGATGTCCAGAAT+TGG - chr4_2:52310405-52310424 None:intergenic 35.0%
! TTCTGGACATCTTGTTGTAT+AGG + chr4_2:52310406-52310425 Msa0606180:intron 35.0%
! CAAAACTGACTTATGAGATG+AGG + chr4_2:52310475-52310494 Msa0606180:intron 35.0%
! TCATTGGAGTACTTCTCATT+TGG + chr4_2:52310785-52310804 Msa0606180:intron 35.0%
TCATTTGGCAATCCTTACAT+TGG + chr4_2:52310800-52310819 Msa0606180:intron 35.0%
!! TTAGGAGCTTTAAAAAGGAC+AGG + chr4_2:52310833-52310852 Msa0606180:intron 35.0%
TTGCTTTGATTGTGTTATGG+TGG - chr4_2:52311111-52311130 None:intergenic 35.0%
!! AGGCTTTTAACTAACTGTGA+AGG - chr4_2:52311699-52311718 None:intergenic 35.0%
ATTCATCCACTAGATCCTAA+TGG + chr4_2:52311889-52311908 Msa0606180:intron 35.0%
!! TTTCAAGAGTGCTTACCATT+AGG - chr4_2:52311907-52311926 None:intergenic 35.0%
TGGTAAGCACTCTTGAAATA+TGG + chr4_2:52311909-52311928 Msa0606180:intron 35.0%
!! GTATTTTAGGCAAAGGGATA+TGG + chr4_2:52311931-52311950 Msa0606180:intron 35.0%
TGTGAAAACTTGATCCACTA+CGG - chr4_2:52311980-52311999 None:intergenic 35.0%
GGGAACTTCAGGAACAATAA+TGG - chr4_2:52307050-52307069 None:intergenic 40.0%
CTGAAGTTCCCTTATCCTTT+GGG + chr4_2:52307059-52307078 Msa0606180:five_prime_UTR 40.0%
GATGTTAAAATGGTGCTTGC+TGG - chr4_2:52307123-52307142 None:intergenic 40.0%
AAAAAAAGTAGTGTGGGAGC+AGG + chr4_2:52307320-52307339 Msa0606180:CDS 40.0%
!! GATACCGAGTATAGTGGATA+GGG - chr4_2:52307440-52307459 None:intergenic 40.0%
!! TGATACCGAGTATAGTGGAT+AGG - chr4_2:52307441-52307460 None:intergenic 40.0%
AGAATGGAGAGTCACATGAT+TGG + chr4_2:52307631-52307650 Msa0606180:intron 40.0%
GAATGGAGAGTCACATGATT+GGG + chr4_2:52307632-52307651 Msa0606180:intron 40.0%
TGTGTTTGCGAAGGTTAAGT+GGG - chr4_2:52307701-52307720 None:intergenic 40.0%
ATGTGTTTGCGAAGGTTAAG+TGG - chr4_2:52307702-52307721 None:intergenic 40.0%
TGTTATTGCACCAAGCAGAT+TGG + chr4_2:52308220-52308239 Msa0606180:CDS 40.0%
! AAGTGGACTCATATCCATCA+TGG + chr4_2:52308428-52308447 Msa0606180:CDS 40.0%
AAACAAGCAATTGGAGTTCC+AGG - chr4_2:52308499-52308518 None:intergenic 40.0%
ATCTGTACCAAGCAACACTT+TGG + chr4_2:52308585-52308604 Msa0606180:intron 40.0%
TCTGTACCAAGCAACACTTT+GGG + chr4_2:52308586-52308605 Msa0606180:intron 40.0%
!! TATTACCCCAAAGTGTTGCT+TGG - chr4_2:52308595-52308614 None:intergenic 40.0%
! TATATGTGAGTTGGCTATCG+GGG - chr4_2:52308701-52308720 None:intergenic 40.0%
GCACAAGTAACACAACTTTC+TGG + chr4_2:52308945-52308964 Msa0606180:intron 40.0%
TTCTCATGGGAGATAAGCTT+TGG + chr4_2:52309415-52309434 Msa0606180:intron 40.0%
CCACAATGGTGAATCTAAAG+AGG - chr4_2:52309510-52309529 None:intergenic 40.0%
CCTCTTTAGATTCACCATTG+TGG + chr4_2:52309507-52309526 Msa0606180:intron 40.0%
! AGAATCGAGGATTCTCGTTT+TGG + chr4_2:52309625-52309644 Msa0606180:CDS 40.0%
! GAATCGAGGATTCTCGTTTT+GGG + chr4_2:52309626-52309645 Msa0606180:CDS 40.0%
! AATCGAGGATTCTCGTTTTG+GGG + chr4_2:52309627-52309646 Msa0606180:CDS 40.0%
! GTCATCGCCTTGATGATAAA+TGG + chr4_2:52309656-52309675 Msa0606180:CDS 40.0%
!! GATGATAAATGGCTTGTTGG+TGG + chr4_2:52309667-52309686 Msa0606180:CDS 40.0%
! GGAAATCTTTCACCAGCTTT+TGG - chr4_2:52309808-52309827 None:intergenic 40.0%
AATGGATCCATTCAGTACCT+TGG - chr4_2:52309853-52309872 None:intergenic 40.0%
! AAAGACTAGCCCAACGAAAT+TGG - chr4_2:52310035-52310054 None:intergenic 40.0%
!! ATTGGATCCCTTGGATTAGT+CGG + chr4_2:52310076-52310095 Msa0606180:intron 40.0%
CTTAAGACCGACTAATCCAA+GGG - chr4_2:52310086-52310105 None:intergenic 40.0%
CAATGTGGGAACTTATGCTT+TGG - chr4_2:52310297-52310316 None:intergenic 40.0%
ATGTCCAGAATTGGGCATAA+GGG - chr4_2:52310396-52310415 None:intergenic 40.0%
TTTCTTGAGAAGTCACCGTT+AGG + chr4_2:52310697-52310716 Msa0606180:intron 40.0%
TCCTTAACAAGTGTCCCAAA+TGG + chr4_2:52310885-52310904 Msa0606180:intron 40.0%
AGCCCTAAGTACTAAAGACA+AGG - chr4_2:52310965-52310984 None:intergenic 40.0%
TTCAGGGACAAAGCCAAATT+TGG + chr4_2:52311066-52311085 Msa0606180:intron 40.0%
!! TGGAATTTGATTTTCTGGGC+AGG + chr4_2:52311188-52311207 Msa0606180:intron 40.0%
! TCAACATCATTTTCTGGACG+TGG - chr4_2:52311220-52311239 None:intergenic 40.0%
TCTTACCTCTATACGTGCAA+TGG - chr4_2:52311266-52311285 None:intergenic 40.0%
AGGCCCATGAAGTTAGAATT+TGG + chr4_2:52311665-52311684 Msa0606180:intron 40.0%
TGCTTACCATTAGGATCTAG+TGG - chr4_2:52311898-52311917 None:intergenic 40.0%
! AAAGGGATATGGGTTGCTAA+AGG + chr4_2:52311942-52311961 Msa0606180:CDS 40.0%
! TATGGGTTGCTAAAGGATCT+AGG + chr4_2:52311949-52311968 Msa0606180:CDS 40.0%
AGTGGACAAAGATACGAGAA+AGG + chr4_2:52312025-52312044 Msa0606180:CDS 40.0%
GTGGACAAAGATACGAGAAA+GGG + chr4_2:52312026-52312045 Msa0606180:CDS 40.0%
AACCAAACAGAAGCTGCATA+CGG + chr4_2:52312075-52312094 Msa0606180:CDS 40.0%
AACTGCATTGTTGGCAATGA+AGG + chr4_2:52312098-52312117 Msa0606180:CDS 40.0%
ACTGCATTGTTGGCAATGAA+GGG + chr4_2:52312099-52312118 Msa0606180:CDS 40.0%
TGATGCATTTGCCCTTAAGT+TGG - chr4_2:52312147-52312166 None:intergenic 40.0%
CCAAAGGATAAGGGAACTTC+AGG - chr4_2:52307061-52307080 None:intergenic 45.0%
CCTGAAGTTCCCTTATCCTT+TGG + chr4_2:52307058-52307077 Msa0606180:five_prime_UTR 45.0%
! TAAAATGGTGCTTGCTGGGT+GGG - chr4_2:52307118-52307137 None:intergenic 45.0%
! TTAAAATGGTGCTTGCTGGG+TGG - chr4_2:52307119-52307138 None:intergenic 45.0%
TCGACACAATGTGTTTGCGA+AGG - chr4_2:52307710-52307729 None:intergenic 45.0%
ATGTTGTACTGCAGTGACAC+AGG + chr4_2:52308033-52308052 Msa0606180:intron 45.0%
TTTACAGCAGGTAGTGCATC+AGG - chr4_2:52308099-52308118 None:intergenic 45.0%
!! GGTGCAATGGATTTTACAGC+AGG - chr4_2:52308111-52308130 None:intergenic 45.0%
! TGTATGGTTTGGAGGTGCAA+TGG - chr4_2:52308124-52308143 None:intergenic 45.0%
! GAGCATACTGTATGGTTTGG+AGG - chr4_2:52308132-52308151 None:intergenic 45.0%
GCAGAGCATACTGTATGGTT+TGG - chr4_2:52308135-52308154 None:intergenic 45.0%
ACGATGCAGAGCATACTGTA+TGG - chr4_2:52308140-52308159 None:intergenic 45.0%
!!! ACCAAGCAGATTGGCTTTTG+TGG + chr4_2:52308229-52308248 Msa0606180:CDS 45.0%
! TGGCTTTTGTGGCTTCTTCA+TGG + chr4_2:52308240-52308259 Msa0606180:CDS 45.0%
TGGCTTCTTCATGGAAAGCT+TGG + chr4_2:52308249-52308268 Msa0606180:CDS 45.0%
GATGGATATGAGTCCACTTC+AGG - chr4_2:52308427-52308446 None:intergenic 45.0%
CTGTACCAAGCAACACTTTG+GGG + chr4_2:52308587-52308606 Msa0606180:intron 45.0%
TCAAGTCTCAACGCTCAAGA+AGG - chr4_2:52308878-52308897 None:intergenic 45.0%
CTTGTGGCACAACTGGAATT+TGG - chr4_2:52308915-52308934 None:intergenic 45.0%
TTGCTGTGTTGCAATGGCAT+TGG + chr4_2:52308979-52308998 Msa0606180:intron 45.0%
TACACGGTGCATATCCTTTC+AGG + chr4_2:52309053-52309072 Msa0606180:intron 45.0%
! AAGGAGTGTGTTGTATGCAC+CGG + chr4_2:52309083-52309102 Msa0606180:CDS 45.0%
AGCTATACTGTCAGTGGTTC+CGG - chr4_2:52309105-52309124 None:intergenic 45.0%
AAACGCAGCTATACTGTCAG+TGG - chr4_2:52309111-52309130 None:intergenic 45.0%
AATGCTCTGTGGTCTTCTCA+TGG + chr4_2:52309401-52309420 Msa0606180:intron 45.0%
ATGCTCTGTGGTCTTCTCAT+GGG + chr4_2:52309402-52309421 Msa0606180:intron 45.0%
CCAACCATAGGAACGAACAA+AGG - chr4_2:52309455-52309474 None:intergenic 45.0%
CCTTTGTTCGTTCCTATGGT+TGG + chr4_2:52309452-52309471 Msa0606180:intron 45.0%
!! TAAAGAGGTGCTTGGCCTTA+AGG - chr4_2:52309495-52309514 None:intergenic 45.0%
!! GGTGAATCTAAAGAGGTGCT+TGG - chr4_2:52309503-52309522 None:intergenic 45.0%
!! GTTGGTGGTGCTTCAAATAC+TGG + chr4_2:52309682-52309701 Msa0606180:CDS 45.0%
TGGCAGAGGATAGTAGTCTA+AGG - chr4_2:52309788-52309807 None:intergenic 45.0%
TACTATCCTCTGCCAAAAGC+TGG + chr4_2:52309793-52309812 Msa0606180:CDS 45.0%
!! TTTGGCTCCAAGGTACTGAA+TGG + chr4_2:52309843-52309862 Msa0606180:intron 45.0%
! GGATCCATTTTGCTCTCTGT+TGG + chr4_2:52309864-52309883 Msa0606180:intron 45.0%
CGTTCCAACAGAGAGCAAAA+TGG - chr4_2:52309871-52309890 None:intergenic 45.0%
!! TTGGGTTGGCATGATGATGT+TGG + chr4_2:52309960-52309979 Msa0606180:intron 45.0%
! TTGGCATGATGATGTTGGCT+TGG + chr4_2:52309965-52309984 Msa0606180:intron 45.0%
!! TGGCATGATGATGTTGGCTT+GGG + chr4_2:52309966-52309985 Msa0606180:intron 45.0%
!! TCCTTGGTGCCAATTTCGTT+GGG + chr4_2:52310023-52310042 Msa0606180:intron 45.0%
!! GCTAGTCTTTAACCTGCAAG+TGG + chr4_2:52310045-52310064 Msa0606180:intron 45.0%
TTTAACCTGCAAGTGGACGA+TGG + chr4_2:52310052-52310071 Msa0606180:intron 45.0%
TTAACCTGCAAGTGGACGAT+GGG + chr4_2:52310053-52310072 Msa0606180:intron 45.0%
GCTTAAGACCGACTAATCCA+AGG - chr4_2:52310087-52310106 None:intergenic 45.0%
!! TGGATTAGTCGGTCTTAAGC+CGG + chr4_2:52310087-52310106 Msa0606180:intron 45.0%
TGTGGGAACTTATGCTTTGG+AGG - chr4_2:52310294-52310313 None:intergenic 45.0%
TCAACCCTTATGCCCAATTC+TGG + chr4_2:52310389-52310408 Msa0606180:intron 45.0%
GATGTCCAGAATTGGGCATA+AGG - chr4_2:52310397-52310416 None:intergenic 45.0%
! GCCATTTGGGACACTTGTTA+AGG - chr4_2:52310889-52310908 None:intergenic 45.0%
GGAATCCATTGCACGTATAG+AGG + chr4_2:52311258-52311277 Msa0606180:CDS 45.0%
! GTGGATCAAGTTTTCACAGC+CGG + chr4_2:52311982-52312001 Msa0606180:CDS 45.0%
GAGGAGCGAAAAATGAGAAG+TGG + chr4_2:52312007-52312026 Msa0606180:CDS 45.0%
!! AAGATACGAGAAAGGGTGCT+TGG + chr4_2:52312033-52312052 Msa0606180:CDS 45.0%
TTCCGTATGCAGCTTCTGTT+TGG - chr4_2:52312080-52312099 None:intergenic 45.0%
TGCATACGGAACTGCATTGT+TGG + chr4_2:52312089-52312108 Msa0606180:CDS 45.0%
!!! ATTTTTTTTTTTTTAAAACT+CGG - chr4_2:52310116-52310135 None:intergenic 5.0%
TGGTGGTAAAGTTGCGGACT+GGG - chr4_2:52307030-52307049 None:intergenic 50.0%
ATGGTGGTAAAGTTGCGGAC+TGG - chr4_2:52307031-52307050 None:intergenic 50.0%
GCAGGTGAAAGGCTGTATCT+CGG + chr4_2:52307338-52307357 Msa0606180:CDS 50.0%
CAGGTGAAAGGCTGTATCTC+GGG + chr4_2:52307339-52307358 Msa0606180:CDS 50.0%
TGAAAGGCTGTATCTCGGGT+TGG + chr4_2:52307343-52307362 Msa0606180:CDS 50.0%
!! CTGTATCTCGGGTTGGACTT+TGG + chr4_2:52307350-52307369 Msa0606180:CDS 50.0%
GCGACCCTATCCACTATACT+CGG + chr4_2:52307433-52307452 Msa0606180:CDS 50.0%
CTCTGTGTAAGCTCGTGTCA+TGG + chr4_2:52308163-52308182 Msa0606180:CDS 50.0%
TGTGTAAGCTCGTGTCATGG+TGG + chr4_2:52308166-52308185 Msa0606180:CDS 50.0%
! GTGTCATGGTGGAATCGTGA+TGG + chr4_2:52308177-52308196 Msa0606180:CDS 50.0%
GCCACAAAAGCCAATCTGCT+TGG - chr4_2:52308233-52308252 None:intergenic 50.0%
CTCTGTTGCGATATCCGAGT+TGG + chr4_2:52308356-52308375 Msa0606180:intron 50.0%
GGTTGGGTATGATCCTGAAG+TGG + chr4_2:52308411-52308430 Msa0606180:intron 50.0%
! GGTTGAGAGACTAGCCATGA+TGG - chr4_2:52308445-52308464 None:intergenic 50.0%
TGGAGTTCCAGGTGCAAGAA+CGG - chr4_2:52308488-52308507 None:intergenic 50.0%
GCGTTGAGACTTGAGACACA+CGG + chr4_2:52308884-52308903 Msa0606180:intron 50.0%
GGCTCCTTTGTTCGTTCCTA+TGG + chr4_2:52309448-52309467 Msa0606180:intron 50.0%
GGTGGTGCTTCAAATACTGG+AGG + chr4_2:52309685-52309704 Msa0606180:CDS 50.0%
! CTTTCACCAGCTTTTGGCAG+AGG - chr4_2:52309802-52309821 None:intergenic 50.0%
TCCGGTTGCAGATCCAGATT+TGG + chr4_2:52309825-52309844 Msa0606180:CDS 50.0%
GCCAAATCTGGATCTGCAAC+CGG - chr4_2:52309829-52309848 None:intergenic 50.0%
! CAGATCCAGATTTGGCTCCA+AGG + chr4_2:52309833-52309852 Msa0606180:CDS 50.0%
CAGTACCTTGGAGCCAAATC+TGG - chr4_2:52309841-52309860 None:intergenic 50.0%
!! CTCCTTGGTGCCAATTTCGT+TGG + chr4_2:52310022-52310041 Msa0606180:intron 50.0%
! GATCAAGTTTTCACAGCCGG+TGG + chr4_2:52311985-52312004 Msa0606180:CDS 50.0%
!! CTCATTTTTCGCTCCTCCAC+CGG - chr4_2:52312004-52312023 None:intergenic 50.0%
!! GTTTGGTTTGCACGACTCAC+AGG - chr4_2:52312063-52312082 None:intergenic 50.0%
!! TGCGGACTGGGAGCGAAAAA+AGG - chr4_2:52307018-52307037 None:intergenic 55.0%
GTAGTGTGGGAGCAGGTGAA+AGG + chr4_2:52307327-52307346 Msa0606180:CDS 55.0%
GGGTTGGACTTTGGCACTTC+CGG + chr4_2:52307359-52307378 Msa0606180:CDS 55.0%
TGGTGGCACAATTCAAGCCG+AGG + chr4_2:52307406-52307425 Msa0606180:CDS 55.0%
! TGGATAGGGTCGCTTTGCCT+CGG - chr4_2:52307426-52307445 None:intergenic 55.0%
CACATGATTGGGTACGCTCG+TGG + chr4_2:52307643-52307662 Msa0606180:CDS 55.0%
GTGACACAGGAGAACCGTTG+TGG + chr4_2:52308046-52308065 Msa0606180:intron 55.0%
TTACCGTCCGTTCTTGCACC+TGG + chr4_2:52308478-52308497 Msa0606180:CDS 55.0%
GTTCCAGGTGCAAGAACGGA+CGG - chr4_2:52308484-52308503 None:intergenic 55.0%
GCCCAACGAAATTGGCACCA+AGG - chr4_2:52310027-52310046 None:intergenic 55.0%
CAATCCCATCGTCCACTTGC+AGG - chr4_2:52310060-52310079 None:intergenic 55.0%
CTGCAAGTGGACGATGGGAT+TGG + chr4_2:52310058-52310077 Msa0606180:intron 55.0%
GACGATGGGATTGGATCCCT+TGG + chr4_2:52310067-52310086 Msa0606180:intron 55.0%
GGATCTAGGTGCAACCGTAG+TGG + chr4_2:52311963-52311982 Msa0606180:CDS 55.0%
! CAAGTTTTCACAGCCGGTGG+AGG + chr4_2:52311988-52312007 Msa0606180:CDS 55.0%
! GCAGCTCGTGCTACTCAACC+TGG + chr4_2:52309134-52309153 Msa0606180:CDS 60.0%
CGCTCTCTGAGCCTTGAGCC+TGG + chr4_2:52308666-52308685 Msa0606180:intron 65.0%
TCTGAGCCTTGAGCCTGGCC+TGG + chr4_2:52308671-52308690 Msa0606180:intron 65.0%
GTTGGCTATCGGGGCTCACC+AGG - chr4_2:52308692-52308711 None:intergenic 65.0%
!! GGCTCAGAGAGCGCTGACCG+TGG - chr4_2:52308659-52308678 None:intergenic 70.0%
GGCTCACCAGGCCAGGCTCA+AGG - chr4_2:52308680-52308699 None:intergenic 70.0%
CTATCGGGGCTCACCAGGCC+AGG - chr4_2:52308687-52308706 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52307003 52312352 52307003 ID=Msa0606180;Name=Msa0606180
chr4_2 mRNA 52307003 52312352 52307003 ID=Msa0606180-mRNA-1;Parent=Msa0606180;Name=Msa0606180-mRNA-1;_AED=0.25;_eAED=0.25;_QI=90|1|1|1|1|1|9|209|480
chr4_2 exon 52307003 52307165 52307003 ID=Msa0606180-mRNA-1:exon:12774;Parent=Msa0606180-mRNA-1
chr4_2 exon 52307252 52307454 52307252 ID=Msa0606180-mRNA-1:exon:12775;Parent=Msa0606180-mRNA-1
chr4_2 exon 52307633 52307772 52307633 ID=Msa0606180-mRNA-1:exon:12776;Parent=Msa0606180-mRNA-1
chr4_2 exon 52308047 52308299 52308047 ID=Msa0606180-mRNA-1:exon:12777;Parent=Msa0606180-mRNA-1
chr4_2 exon 52308412 52308544 52308412 ID=Msa0606180-mRNA-1:exon:12778;Parent=Msa0606180-mRNA-1
chr4_2 exon 52309075 52309163 52309075 ID=Msa0606180-mRNA-1:exon:12779;Parent=Msa0606180-mRNA-1
chr4_2 exon 52309577 52309854 52309577 ID=Msa0606180-mRNA-1:exon:12780;Parent=Msa0606180-mRNA-1
chr4_2 exon 52311210 52311279 52311210 ID=Msa0606180-mRNA-1:exon:12781;Parent=Msa0606180-mRNA-1
chr4_2 exon 52311940 52312352 52311940 ID=Msa0606180-mRNA-1:exon:12782;Parent=Msa0606180-mRNA-1
chr4_2 five_prime_UTR 52307003 52307092 52307003 ID=Msa0606180-mRNA-1:five_prime_utr;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52307093 52307165 52307093 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52307252 52307454 52307252 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52307633 52307772 52307633 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52308047 52308299 52308047 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52308412 52308544 52308412 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52309075 52309163 52309075 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52309577 52309854 52309577 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52311210 52311279 52311210 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 CDS 52311940 52312143 52311940 ID=Msa0606180-mRNA-1:cds;Parent=Msa0606180-mRNA-1
chr4_2 three_prime_UTR 52312144 52312352 52312144 ID=Msa0606180-mRNA-1:three_prime_utr;Parent=Msa0606180-mRNA-1
Gene Sequence

>Msa0606180

ATGGTAGGCACTGTTTCAGTAACCCACCCAGCAAGCACCATTTTAACATCTTTCACATATAGTCGAAAACTTGGAAACAGGTTATTACTGTTAGGTAACAAACCAAGAACAGTATCAATGTCTCTCAAAAACGGAGATAACAAAAAAAGTAGTGTGGGAGCAGGTGAAAGGCTGTATCTCGGGTTGGACTTTGGCACTTCCGGTGCAAGATTTGCTATCATTGACATTGGTGGCACAATTCAAGCCGAGGCAAAGCGACCCTATCCACTATACTCGAATGGAGAGTCACATGATTGGGTACGCTCGTGGAAAGAGACACTTTTTTTGTTGCTTGAAGATATCCCACTTAACCTTCGCAAACACATTGTGTCGATTTCTATTGATGGCACATCTGCAACTACTATCATTGTTGATAGTGACACAGGAGAACCGTTGTGGAGACCTTTACTTTACAATGAGAGTTGTCCTGATGCACTACCTGCTGTAAAATCCATTGCACCTCCAAACCATACAGTATGCTCTGCATCGTCGACTCTGTGTAAGCTCGTGTCATGGTGGAATCGTGATGGTTCAAACAAAAAATCTGCTCTGTTATTGCACCAAGCAGATTGGCTTTTGTGGCTTCTTCATGGAAAGCTTGGAGTTTCAGATTATAATAATGCTCTGAAGGTTGGGTATGATCCTGAAGTGGACTCATATCCATCATGGCTAGTCTCTCAACCATATTCTCATCTTTTACCGTCCGTTCTTGCACCTGGAACTCCAATTGCTTGTTTAAAGGAGGAACTTATAAATAAATTTGGTTTTCAAAAGGAGTGTGTTGTATGCACCGGAACCACTGACAGTATAGCTGCGTTTCTTGCAGCTCGTGCTACTCAACCTGGAAAAGCTGTTACATCATTGGGTTCAACACTTGCTATTAAACTATTAAGCAACTCAAGAATCGAGGATTCTCGTTTTGGGGTGTATAGTCATCGCCTTGATGATAAATGGCTTGTTGGTGGTGCTTCAAATACTGGAGGAGTTGTTCTTAGACAGCTTTTCACCGATGATCAACTAGAGAAACTGAGTGAACAAATCAATCCCTCACAAATATCTTCCTTAGACTACTATCCTCTGCCAAAAGCTGGTGAAAGATTTCCGGTTGCAGATCCAGATTTGGCTCCAAGGCTACTTCCACGTCCAGAAAATGATGTTGAATACTTGCATGGAATTTTGGAATCCATTGCACGTATAGAGGCAAAGGGATATGGGTTGCTAAAGGATCTAGGTGCAACCGTAGTGGATCAAGTTTTCACAGCCGGTGGAGGAGCGAAAAATGAGAAGTGGACAAAGATACGAGAAAGGGTGCTTGGTTTACCTGTGAGTCGTGCAAACCAAACAGAAGCTGCATACGGAACTGCATTGTTGGCAATGAAGGGTGATCAACAAAATATTTTGTGA

Protein sequence

>Msa0606180

MVGTVSVTHPASTILTSFTYSRKLGNRLLLLGNKPRTVSMSLKNGDNKKSSVGAGERLYLGLDFGTSGARFAIIDIGGTIQAEAKRPYPLYSNGESHDWVRSWKETLFLLLEDIPLNLRKHIVSISIDGTSATTIIVDSDTGEPLWRPLLYNESCPDALPAVKSIAPPNHTVCSASSTLCKLVSWWNRDGSNKKSALLLHQADWLLWLLHGKLGVSDYNNALKVGYDPEVDSYPSWLVSQPYSHLLPSVLAPGTPIACLKEELINKFGFQKECVVCTGTTDSIAAFLAARATQPGKAVTSLGSTLAIKLLSNSRIEDSRFGVYSHRLDDKWLVGGASNTGGVVLRQLFTDDQLEKLSEQINPSQISSLDYYPLPKAGERFPVADPDLAPRLLPRPENDVEYLHGILESIARIEAKGYGLLKDLGATVVDQVFTAGGGAKNEKWTKIRERVLGLPVSRANQTEAAYGTALLAMKGDQQNIL*