AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331490 MtrunA17_Chr4g0062381 95.963 322 13 0 1 322 1 322 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331490 AT1G74070.1 59.582 287 105 3 39 322 35 313 2.74e-109 321
Msa1331490 AT1G74070.2 55.906 254 101 3 39 289 35 280 8.11e-86 259

Find 93 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTGCTTGCTGCTTCTTT+TGG 0.163725 8_4:-51047657 Msa1331490:CDS
GTAATGACAACTTTGGAATA+AGG 0.264096 8_4:+51046733 None:intergenic
GTCTGCCACATGATTGTAAA+TGG 0.266936 8_4:-51046585 Msa1331490:three_prime_UTR
TGTTATACTCACCTAAAATA+TGG 0.299921 8_4:+51046972 None:intergenic
GATGCTTCGTCTCTGGTAAT+TGG 0.300640 8_4:-51047068 Msa1331490:CDS
TAACAAAACAGGAAGCAATT+TGG 0.303924 8_4:-51047315 Msa1331490:CDS
CGCGTTACTATAGAGCTTTA+TGG 0.332569 8_4:-51047488 Msa1331490:CDS
TAATGACAACTTTGGAATAA+GGG 0.342912 8_4:+51046734 None:intergenic
AACTTAGGAGGTGGCTTTGA+TGG 0.344521 8_4:+51047197 None:intergenic
TGTTGGCACTGCTTAGGAAT+TGG 0.350527 8_4:+51047862 None:intergenic
GTCTTCTTCTGCTCTTGCTC+TGG 0.354844 8_4:+51047625 None:intergenic
AACAGGGTGGCGAAGCTTAT+AGG 0.358689 8_4:-51046796 Msa1331490:intron
TAATCAGCTACCTAACAAAA+AGG 0.360584 8_4:-51047928 Msa1331490:five_prime_UTR
AGCATTTCACTGCTTATTGT+TGG 0.363804 8_4:+51047845 None:intergenic
GCCACCTCCTAAGTTTAAAC+TGG 0.368651 8_4:-51047189 Msa1331490:CDS
CATCCACCCCATAGGATCTA+AGG 0.376647 8_4:+51047348 None:intergenic
CTGCATTGCTGTTTGAGGTT+CGG 0.381738 8_4:+51047713 None:intergenic
CCGCCATGTTGGACGTAATT+CGG 0.383851 8_4:+51047371 None:intergenic
CATGGCGGCCTTAGATCCTA+TGG 0.389798 8_4:-51047356 Msa1331490:CDS
GAAGTTGGAACCGATCCTAA+TGG 0.394106 8_4:-51047131 Msa1331490:CDS
AGGGAACTTCGCAGTACTCT+TGG 0.405840 8_4:+51047815 None:intergenic
ACAATCTGCATTGCTGTTTG+AGG 0.408519 8_4:+51047708 None:intergenic
CTTGCAACCAGTTTAAACTT+AGG 0.413428 8_4:+51047182 None:intergenic
ACCAACTGGTTCCCGATCAA+TGG 0.415669 8_4:+51047511 None:intergenic
ATGACAAATTCTGTCCCATT+AGG 0.423603 8_4:+51047116 None:intergenic
CTTTGACGTATCCATTGATC+GGG 0.436764 8_4:-51047522 Msa1331490:CDS
GCTTATTGTTGGCACTGCTT+AGG 0.442150 8_4:+51047856 None:intergenic
ATGAAGGGTTGAAGGGTTGA+AGG 0.443047 8_4:+51047795 None:intergenic
AGAATGTATGAGAAATGTCC+TGG 0.443238 8_4:-51047263 Msa1331490:CDS
GCAGAGCTTGCTAACAAAAC+AGG 0.444691 8_4:-51047326 Msa1331490:CDS
ACAGTTTGTAATGACAACTT+TGG 0.444850 8_4:+51046726 None:intergenic
GGAACTAGATGCTTCGTCTC+TGG 0.450535 8_4:-51047075 Msa1331490:CDS
ATCTCCTAGTTTGTCACTGT+TGG 0.453205 8_4:+51047598 None:intergenic
TTTAAACTGGTTGCAAGACT+AGG 0.453783 8_4:-51047176 Msa1331490:CDS
TCTGCCACATGATTGTAAAT+GGG 0.462386 8_4:-51046584 Msa1331490:three_prime_UTR
AGGATACTTTAGAGATTTCG+TGG 0.466773 8_4:+51047999 None:intergenic
TGGAAGGGTGGTAGGAGGAA+TGG 0.470072 8_4:-51047048 Msa1331490:CDS
TCTATAGTAACGCGACCAAC+TGG 0.483195 8_4:+51047497 None:intergenic
GAGATTGATCAAGAAGAAGT+TGG 0.483673 8_4:-51047146 Msa1331490:CDS
AAGTTGGAACCGATCCTAAT+GGG 0.484967 8_4:-51047130 Msa1331490:CDS
TTCGGAAAATGTGGTGTAGT+TGG 0.485464 8_4:+51047731 None:intergenic
CTAAACCTCTCAACTCCTGC+AGG 0.485637 8_4:+51047455 None:intergenic
CTGGTAATTGGAAGGGTGGT+AGG 0.487495 8_4:-51047056 Msa1331490:CDS
AGGGCTGTTGTTGCAGAAAG+AGG 0.493060 8_4:-51046766 Msa1331490:CDS
GGGAACTTCGCAGTACTCTT+GGG 0.493561 8_4:+51047816 None:intergenic
TCTTTGACGTATCCATTGAT+CGG 0.498398 8_4:-51047523 Msa1331490:CDS
TTAAACTGGTTGCAAGACTA+GGG 0.504883 8_4:-51047175 Msa1331490:CDS
AAGATTGTCAGTGGAGCTGC+TGG 0.505949 8_4:-51047431 Msa1331490:CDS
ACTTAGGAGGTGGCTTTGAT+GGG 0.509206 8_4:+51047198 None:intergenic
AGGATCTAAGGCCGCCATGT+TGG 0.511340 8_4:+51047360 None:intergenic
CTTCGTCTCTGGTAATTGGA+AGG 0.515812 8_4:-51047064 Msa1331490:CDS
AGTGCTGTTGTATGAGATGA+AGG 0.518876 8_4:+51047779 None:intergenic
TGGCAGACGGCAAATAGAGT+TGG 0.529294 8_4:+51046600 None:intergenic
GGTTGTACAGAAGATTAGTC+AGG 0.532433 8_4:-51047024 Msa1331490:CDS
ACCAGTTTAAACTTAGGAGG+TGG 0.532545 8_4:+51047188 None:intergenic
CATTGCAACAAAGGATTCGC+CGG 0.533779 8_4:-51047096 Msa1331490:CDS
GATTTCGTGGATAAGAAAGA+TGG 0.538652 8_4:+51048012 None:intergenic
AGAATTTGTCATTGCAACAA+AGG 0.539538 8_4:-51047105 Msa1331490:CDS
ATGGCGGCCTTAGATCCTAT+GGG 0.543875 8_4:-51047355 Msa1331490:CDS
GCAACCAGTTTAAACTTAGG+AGG 0.546988 8_4:+51047185 None:intergenic
TGAAGGGTTGAAGGGTTGAA+GGG 0.547336 8_4:+51047796 None:intergenic
TATGGAGATGATGTCCCTGC+AGG 0.554714 8_4:-51047470 Msa1331490:CDS
AGGTTTAGCAAGATTGTCAG+TGG 0.558164 8_4:-51047440 Msa1331490:CDS
AGAGACGAAGCATCTAGTTC+CGG 0.559488 8_4:+51047077 None:intergenic
TGTATGAGATGAAGGGTTGA+AGG 0.563418 8_4:+51047787 None:intergenic
AATAACAATAGATAGAGTAA+AGG 0.569079 8_4:+51047979 None:intergenic
GTAATTGGAAGGGTGGTAGG+AGG 0.574187 8_4:-51047053 Msa1331490:CDS
GTGGTGTAGTTGGTAACAGT+TGG 0.581098 8_4:+51047741 None:intergenic
AAGCTCTGCATCCACCCCAT+AGG 0.582375 8_4:+51047340 None:intergenic
GTTACCAACAGTGACAAACT+AGG 0.582532 8_4:-51047602 Msa1331490:CDS
AAATTCTGTCCCATTAGGAT+CGG 0.586133 8_4:+51047121 None:intergenic
CTGCCACATGATTGTAAATG+GGG 0.589314 8_4:-51046583 Msa1331490:three_prime_UTR
TCCATTGATCGGGAACCAGT+TGG 0.591132 8_4:-51047512 Msa1331490:CDS
TTCGTCTCTGGTAATTGGAA+GGG 0.597402 8_4:-51047063 Msa1331490:CDS
AAAGTTGTCATTACAAACTG+TGG 0.597691 8_4:-51046724 Msa1331490:CDS
ATGTCCCTGCAGGAGTTGAG+AGG 0.600392 8_4:-51047460 Msa1331490:CDS
GAATGTATGAGAAATGTCCT+GGG 0.610046 8_4:-51047262 Msa1331490:CDS
ATTTACAATCATGTGGCAGA+CGG 0.613378 8_4:+51046587 None:intergenic
CGGCCTTAGATCCTATGGGG+TGG 0.615240 8_4:-51047351 Msa1331490:CDS
GTCTCTGGTAATTGGAAGGG+TGG 0.619303 8_4:-51047060 Msa1331490:CDS
CGAAGCTTATAGGAGACAAG+AGG 0.623848 8_4:-51046786 Msa1331490:CDS
CTGCTGGTATAAGCTACAGA+AGG 0.626888 8_4:-51047415 Msa1331490:CDS
TTTCCCCATTTACAATCATG+TGG 0.628818 8_4:+51046580 None:intergenic
AAGGGTGGTAGGAGGAATGG+AGG 0.630447 8_4:-51047045 Msa1331490:CDS
GTATGAGATGAAGGGTTGAA+GGG 0.632269 8_4:+51047788 None:intergenic
ATGCCGAATTACGTCCAACA+TGG 0.635402 8_4:-51047374 Msa1331490:CDS
TGTTTGAGGTTCGGAAAATG+TGG 0.637850 8_4:+51047722 None:intergenic
GAAGCTTATAGGAGACAAGA+GGG 0.659815 8_4:-51046785 Msa1331490:CDS
GTGCTGTTGTATGAGATGAA+GGG 0.666064 8_4:+51047780 None:intergenic
TAAACCTCTCAACTCCTGCA+GGG 0.669293 8_4:+51047456 None:intergenic
TGACAACTTTGGAATAAGGG+CGG 0.673460 8_4:+51046737 None:intergenic
CCGAATTACGTCCAACATGG+CGG 0.693184 8_4:-51047371 Msa1331490:CDS
TGGCGGCCTTAGATCCTATG+GGG 0.704631 8_4:-51047354 Msa1331490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATATTGTTATATAAC+AGG - chr8_4:51047777-51047796 Msa1331490:CDS 10.0%
!! ATTTATATTGTTATATAACA+GGG - chr8_4:51047778-51047797 Msa1331490:CDS 10.0%
!! TATTTATATTGTTATATAAC+AGG - chr8_4:51047777-51047796 Msa1331490:CDS 10.0%
!! ATTTATATTGTTATATAACA+GGG - chr8_4:51047778-51047797 Msa1331490:CDS 10.0%
!! ATACAAATGATTAATAAACA+GGG + chr8_4:51047760-51047779 None:intergenic 15.0%
!! AATACAAATGATTAATAAAC+AGG + chr8_4:51047761-51047780 None:intergenic 15.0%
!! ATACAAATGATTAATAAACA+GGG + chr8_4:51047760-51047779 None:intergenic 15.0%
!! AATACAAATGATTAATAAAC+AGG + chr8_4:51047761-51047780 None:intergenic 15.0%
!! AATAACAATAGATAGAGTAA+AGG + chr8_4:51046614-51046633 None:intergenic 20.0%
!! AATAACAATAGATAGAGTAA+AGG + chr8_4:51046614-51046633 None:intergenic 20.0%
!!! TCAAAGAAAACTTGTTTTGT+TGG + chr8_4:51047054-51047073 None:intergenic 25.0%
! TGTTATACTCACCTAAAATA+TGG + chr8_4:51047621-51047640 None:intergenic 25.0%
! TATATTGTTATATAACAGGG+TGG - chr8_4:51047781-51047800 Msa1331490:CDS 25.0%
!!! TAATGACAACTTTGGAATAA+GGG + chr8_4:51047859-51047878 None:intergenic 25.0%
!!! TCAAAGAAAACTTGTTTTGT+TGG + chr8_4:51047054-51047073 None:intergenic 25.0%
! TGTTATACTCACCTAAAATA+TGG + chr8_4:51047621-51047640 None:intergenic 25.0%
! TATATTGTTATATAACAGGG+TGG - chr8_4:51047781-51047800 Msa1331490:CDS 25.0%
!!! TAATGACAACTTTGGAATAA+GGG + chr8_4:51047859-51047878 None:intergenic 25.0%
TAATCAGCTACCTAACAAAA+AGG - chr8_4:51046662-51046681 Msa1331490:three_prime_UTR 30.0%
! TTAAGCTGTTCCTTTTTGTT+AGG + chr8_4:51046675-51046694 None:intergenic 30.0%
TAACAAAACAGGAAGCAATT+TGG - chr8_4:51047275-51047294 Msa1331490:CDS 30.0%
!! TGAAAAACTTGTTGAGGAAT+GGG - chr8_4:51047302-51047321 Msa1331490:CDS 30.0%
AGAATTTGTCATTGCAACAA+AGG - chr8_4:51047485-51047504 Msa1331490:CDS 30.0%
!! GTAATGACAACTTTGGAATA+AGG + chr8_4:51047860-51047879 None:intergenic 30.0%
ACAGTTTGTAATGACAACTT+TGG + chr8_4:51047867-51047886 None:intergenic 30.0%
AAAGTTGTCATTACAAACTG+TGG - chr8_4:51047866-51047885 Msa1331490:five_prime_UTR 30.0%
TAATCAGCTACCTAACAAAA+AGG - chr8_4:51046662-51046681 Msa1331490:three_prime_UTR 30.0%
! TTAAGCTGTTCCTTTTTGTT+AGG + chr8_4:51046675-51046694 None:intergenic 30.0%
TAACAAAACAGGAAGCAATT+TGG - chr8_4:51047275-51047294 Msa1331490:CDS 30.0%
!! TGAAAAACTTGTTGAGGAAT+GGG - chr8_4:51047302-51047321 Msa1331490:CDS 30.0%
AGAATTTGTCATTGCAACAA+AGG - chr8_4:51047485-51047504 Msa1331490:CDS 30.0%
!! GTAATGACAACTTTGGAATA+AGG + chr8_4:51047860-51047879 None:intergenic 30.0%
ACAGTTTGTAATGACAACTT+TGG + chr8_4:51047867-51047886 None:intergenic 30.0%
AAAGTTGTCATTACAAACTG+TGG - chr8_4:51047866-51047885 Msa1331490:five_prime_UTR 30.0%
GATTTCGTGGATAAGAAAGA+TGG + chr8_4:51046581-51046600 None:intergenic 35.0%
! AGGATACTTTAGAGATTTCG+TGG + chr8_4:51046594-51046613 None:intergenic 35.0%
AGCATTTCACTGCTTATTGT+TGG + chr8_4:51046748-51046767 None:intergenic 35.0%
TCTTTGACGTATCCATTGAT+CGG - chr8_4:51047067-51047086 Msa1331490:CDS 35.0%
!! CTGAAAAACTTGTTGAGGAA+TGG - chr8_4:51047301-51047320 Msa1331490:CDS 35.0%
AGAATGTATGAGAAATGTCC+TGG - chr8_4:51047327-51047346 Msa1331490:CDS 35.0%
GAATGTATGAGAAATGTCCT+GGG - chr8_4:51047328-51047347 Msa1331490:CDS 35.0%
CTTGCAACCAGTTTAAACTT+AGG + chr8_4:51047411-51047430 None:intergenic 35.0%
TTTAAACTGGTTGCAAGACT+AGG - chr8_4:51047414-51047433 Msa1331490:CDS 35.0%
TTAAACTGGTTGCAAGACTA+GGG - chr8_4:51047415-51047434 Msa1331490:CDS 35.0%
GAGATTGATCAAGAAGAAGT+TGG - chr8_4:51047444-51047463 Msa1331490:CDS 35.0%
AAATTCTGTCCCATTAGGAT+CGG + chr8_4:51047472-51047491 None:intergenic 35.0%
ATGACAAATTCTGTCCCATT+AGG + chr8_4:51047477-51047496 None:intergenic 35.0%
! GATATCGTCACTGACTAAAA+TGG + chr8_4:51047657-51047676 None:intergenic 35.0%
CTGTTTCAAACTTGTCATGT+TGG + chr8_4:51047687-51047706 None:intergenic 35.0%
ATTTACAATCATGTGGCAGA+CGG + chr8_4:51048006-51048025 None:intergenic 35.0%
TCTGCCACATGATTGTAAAT+GGG - chr8_4:51048006-51048025 Msa1331490:five_prime_UTR 35.0%
TTTCCCCATTTACAATCATG+TGG + chr8_4:51048013-51048032 None:intergenic 35.0%
AGATGGAAATAGCTATGTTC+TGG + chr8_4:51046564-51046583 Msa1331480:three_prime_UTR 35.0%
GATTTCGTGGATAAGAAAGA+TGG + chr8_4:51046581-51046600 None:intergenic 35.0%
! AGGATACTTTAGAGATTTCG+TGG + chr8_4:51046594-51046613 None:intergenic 35.0%
AGCATTTCACTGCTTATTGT+TGG + chr8_4:51046748-51046767 None:intergenic 35.0%
TCTTTGACGTATCCATTGAT+CGG - chr8_4:51047067-51047086 Msa1331490:CDS 35.0%
!! CTGAAAAACTTGTTGAGGAA+TGG - chr8_4:51047301-51047320 Msa1331490:CDS 35.0%
AGAATGTATGAGAAATGTCC+TGG - chr8_4:51047327-51047346 Msa1331490:CDS 35.0%
GAATGTATGAGAAATGTCCT+GGG - chr8_4:51047328-51047347 Msa1331490:CDS 35.0%
CTTGCAACCAGTTTAAACTT+AGG + chr8_4:51047411-51047430 None:intergenic 35.0%
TTTAAACTGGTTGCAAGACT+AGG - chr8_4:51047414-51047433 Msa1331490:CDS 35.0%
TTAAACTGGTTGCAAGACTA+GGG - chr8_4:51047415-51047434 Msa1331490:CDS 35.0%
GAGATTGATCAAGAAGAAGT+TGG - chr8_4:51047444-51047463 Msa1331490:CDS 35.0%
AAATTCTGTCCCATTAGGAT+CGG + chr8_4:51047472-51047491 None:intergenic 35.0%
ATGACAAATTCTGTCCCATT+AGG + chr8_4:51047477-51047496 None:intergenic 35.0%
! GATATCGTCACTGACTAAAA+TGG + chr8_4:51047657-51047676 None:intergenic 35.0%
CTGTTTCAAACTTGTCATGT+TGG + chr8_4:51047687-51047706 None:intergenic 35.0%
ATTTACAATCATGTGGCAGA+CGG + chr8_4:51048006-51048025 None:intergenic 35.0%
TCTGCCACATGATTGTAAAT+GGG - chr8_4:51048006-51048025 Msa1331490:five_prime_UTR 35.0%
TTTCCCCATTTACAATCATG+TGG + chr8_4:51048013-51048032 None:intergenic 35.0%
GTATGAGATGAAGGGTTGAA+GGG + chr8_4:51046805-51046824 None:intergenic 40.0%
TGTATGAGATGAAGGGTTGA+AGG + chr8_4:51046806-51046825 None:intergenic 40.0%
! GTGCTGTTGTATGAGATGAA+GGG + chr8_4:51046813-51046832 None:intergenic 40.0%
! AGTGCTGTTGTATGAGATGA+AGG + chr8_4:51046814-51046833 None:intergenic 40.0%
TTCGGAAAATGTGGTGTAGT+TGG + chr8_4:51046862-51046881 None:intergenic 40.0%
! TGTTTGAGGTTCGGAAAATG+TGG + chr8_4:51046871-51046890 None:intergenic 40.0%
!! ACAATCTGCATTGCTGTTTG+AGG + chr8_4:51046885-51046904 None:intergenic 40.0%
!! TACTTGCTTGCTGCTTCTTT+TGG - chr8_4:51046933-51046952 Msa1331490:intron 40.0%
!! ACTTGCTTGCTGCTTCTTTT+GGG - chr8_4:51046934-51046953 Msa1331490:intron 40.0%
!! TTGCTGCTTCTTTTGGGTAA+TGG - chr8_4:51046940-51046959 Msa1331490:intron 40.0%
GTTACCAACAGTGACAAACT+AGG - chr8_4:51046988-51047007 Msa1331490:CDS 40.0%
! ATCTCCTAGTTTGTCACTGT+TGG + chr8_4:51046995-51047014 None:intergenic 40.0%
CTTTGACGTATCCATTGATC+GGG - chr8_4:51047068-51047087 Msa1331490:CDS 40.0%
CGCGTTACTATAGAGCTTTA+TGG - chr8_4:51047102-51047121 Msa1331490:CDS 40.0%
AGGTTTAGCAAGATTGTCAG+TGG - chr8_4:51047150-51047169 Msa1331490:CDS 40.0%
ATGTCCTGGGACTAAAAATG+TGG - chr8_4:51047341-51047360 Msa1331490:CDS 40.0%
! AAAAATGTGGCTGGTAGTGT+AGG - chr8_4:51047354-51047373 Msa1331490:CDS 40.0%
ACCAGTTTAAACTTAGGAGG+TGG + chr8_4:51047405-51047424 None:intergenic 40.0%
GCAACCAGTTTAAACTTAGG+AGG + chr8_4:51047408-51047427 None:intergenic 40.0%
AAGTTGGAACCGATCCTAAT+GGG - chr8_4:51047460-51047479 Msa1331490:CDS 40.0%
TTCGTCTCTGGTAATTGGAA+GGG - chr8_4:51047527-51047546 Msa1331490:CDS 40.0%
! GGTTGTACAGAAGATTAGTC+AGG - chr8_4:51047566-51047585 Msa1331490:CDS 40.0%
! ACACGAGCTCTCCATATTTT+AGG - chr8_4:51047607-51047626 Msa1331490:CDS 40.0%
GAAGCTTATAGGAGACAAGA+GGG - chr8_4:51047805-51047824 Msa1331490:CDS 40.0%
!! TGACAACTTTGGAATAAGGG+CGG + chr8_4:51047856-51047875 None:intergenic 40.0%
GTCTGCCACATGATTGTAAA+TGG - chr8_4:51048005-51048024 Msa1331490:five_prime_UTR 40.0%
CTGCCACATGATTGTAAATG+GGG - chr8_4:51048007-51048026 Msa1331490:five_prime_UTR 40.0%
GTATGAGATGAAGGGTTGAA+GGG + chr8_4:51046805-51046824 None:intergenic 40.0%
TGTATGAGATGAAGGGTTGA+AGG + chr8_4:51046806-51046825 None:intergenic 40.0%
! GTGCTGTTGTATGAGATGAA+GGG + chr8_4:51046813-51046832 None:intergenic 40.0%
! AGTGCTGTTGTATGAGATGA+AGG + chr8_4:51046814-51046833 None:intergenic 40.0%
TTCGGAAAATGTGGTGTAGT+TGG + chr8_4:51046862-51046881 None:intergenic 40.0%
! TGTTTGAGGTTCGGAAAATG+TGG + chr8_4:51046871-51046890 None:intergenic 40.0%
!! ACAATCTGCATTGCTGTTTG+AGG + chr8_4:51046885-51046904 None:intergenic 40.0%
!! TACTTGCTTGCTGCTTCTTT+TGG - chr8_4:51046933-51046952 Msa1331490:intron 40.0%
!! ACTTGCTTGCTGCTTCTTTT+GGG - chr8_4:51046934-51046953 Msa1331490:intron 40.0%
!! TTGCTGCTTCTTTTGGGTAA+TGG - chr8_4:51046940-51046959 Msa1331490:intron 40.0%
GTTACCAACAGTGACAAACT+AGG - chr8_4:51046988-51047007 Msa1331490:CDS 40.0%
! ATCTCCTAGTTTGTCACTGT+TGG + chr8_4:51046995-51047014 None:intergenic 40.0%
CTTTGACGTATCCATTGATC+GGG - chr8_4:51047068-51047087 Msa1331490:CDS 40.0%
CGCGTTACTATAGAGCTTTA+TGG - chr8_4:51047102-51047121 Msa1331490:CDS 40.0%
AGGTTTAGCAAGATTGTCAG+TGG - chr8_4:51047150-51047169 Msa1331490:CDS 40.0%
ATGTCCTGGGACTAAAAATG+TGG - chr8_4:51047341-51047360 Msa1331490:CDS 40.0%
! AAAAATGTGGCTGGTAGTGT+AGG - chr8_4:51047354-51047373 Msa1331490:CDS 40.0%
ACCAGTTTAAACTTAGGAGG+TGG + chr8_4:51047405-51047424 None:intergenic 40.0%
GCAACCAGTTTAAACTTAGG+AGG + chr8_4:51047408-51047427 None:intergenic 40.0%
AAGTTGGAACCGATCCTAAT+GGG - chr8_4:51047460-51047479 Msa1331490:CDS 40.0%
TTCGTCTCTGGTAATTGGAA+GGG - chr8_4:51047527-51047546 Msa1331490:CDS 40.0%
! GGTTGTACAGAAGATTAGTC+AGG - chr8_4:51047566-51047585 Msa1331490:CDS 40.0%
! ACACGAGCTCTCCATATTTT+AGG - chr8_4:51047607-51047626 Msa1331490:CDS 40.0%
GAAGCTTATAGGAGACAAGA+GGG - chr8_4:51047805-51047824 Msa1331490:CDS 40.0%
!! TGACAACTTTGGAATAAGGG+CGG + chr8_4:51047856-51047875 None:intergenic 40.0%
GTCTGCCACATGATTGTAAA+TGG - chr8_4:51048005-51048024 Msa1331490:five_prime_UTR 40.0%
CTGCCACATGATTGTAAATG+GGG - chr8_4:51048007-51048026 Msa1331490:five_prime_UTR 40.0%
TGTTGGCACTGCTTAGGAAT+TGG + chr8_4:51046731-51046750 None:intergenic 45.0%
GCTTATTGTTGGCACTGCTT+AGG + chr8_4:51046737-51046756 None:intergenic 45.0%
TGAAGGGTTGAAGGGTTGAA+GGG + chr8_4:51046797-51046816 None:intergenic 45.0%
ATGAAGGGTTGAAGGGTTGA+AGG + chr8_4:51046798-51046817 None:intergenic 45.0%
!! GTGGTGTAGTTGGTAACAGT+TGG + chr8_4:51046852-51046871 None:intergenic 45.0%
!! CTGCATTGCTGTTTGAGGTT+CGG + chr8_4:51046880-51046899 None:intergenic 45.0%
! GGTTTTCTTTCAGTGCAGCT+GGG + chr8_4:51047033-51047052 None:intergenic 45.0%
! TGGTTTTCTTTCAGTGCAGC+TGG + chr8_4:51047034-51047053 None:intergenic 45.0%
TCTATAGTAACGCGACCAAC+TGG + chr8_4:51047096-51047115 None:intergenic 45.0%
TAAACCTCTCAACTCCTGCA+GGG + chr8_4:51047137-51047156 None:intergenic 45.0%
CTGCTGGTATAAGCTACAGA+AGG - chr8_4:51047175-51047194 Msa1331490:CDS 45.0%
ATGCCGAATTACGTCCAACA+TGG - chr8_4:51047216-51047235 Msa1331490:CDS 45.0%
!! GCAGAGCTTGCTAACAAAAC+AGG - chr8_4:51047264-51047283 Msa1331490:CDS 45.0%
!! GGCTGCTGAAAAACTTGTTG+AGG - chr8_4:51047296-51047315 Msa1331490:CDS 45.0%
!! ACTTAGGAGGTGGCTTTGAT+GGG + chr8_4:51047395-51047414 None:intergenic 45.0%
!! AACTTAGGAGGTGGCTTTGA+TGG + chr8_4:51047396-51047415 None:intergenic 45.0%
GCCACCTCCTAAGTTTAAAC+TGG - chr8_4:51047401-51047420 Msa1331490:CDS 45.0%
GAAGTTGGAACCGATCCTAA+TGG - chr8_4:51047459-51047478 Msa1331490:CDS 45.0%
CATTGCAACAAAGGATTCGC+CGG - chr8_4:51047494-51047513 Msa1331490:CDS 45.0%
! AGAGACGAAGCATCTAGTTC+CGG + chr8_4:51047516-51047535 None:intergenic 45.0%
GATGCTTCGTCTCTGGTAAT+TGG - chr8_4:51047522-51047541 Msa1331490:CDS 45.0%
CTTCGTCTCTGGTAATTGGA+AGG - chr8_4:51047526-51047545 Msa1331490:CDS 45.0%
CGAAGCTTATAGGAGACAAG+AGG - chr8_4:51047804-51047823 Msa1331490:CDS 45.0%
TGTTGGCACTGCTTAGGAAT+TGG + chr8_4:51046731-51046750 None:intergenic 45.0%
GCTTATTGTTGGCACTGCTT+AGG + chr8_4:51046737-51046756 None:intergenic 45.0%
TGAAGGGTTGAAGGGTTGAA+GGG + chr8_4:51046797-51046816 None:intergenic 45.0%
ATGAAGGGTTGAAGGGTTGA+AGG + chr8_4:51046798-51046817 None:intergenic 45.0%
!! GTGGTGTAGTTGGTAACAGT+TGG + chr8_4:51046852-51046871 None:intergenic 45.0%
!! CTGCATTGCTGTTTGAGGTT+CGG + chr8_4:51046880-51046899 None:intergenic 45.0%
! GGTTTTCTTTCAGTGCAGCT+GGG + chr8_4:51047033-51047052 None:intergenic 45.0%
! TGGTTTTCTTTCAGTGCAGC+TGG + chr8_4:51047034-51047053 None:intergenic 45.0%
TCTATAGTAACGCGACCAAC+TGG + chr8_4:51047096-51047115 None:intergenic 45.0%
TAAACCTCTCAACTCCTGCA+GGG + chr8_4:51047137-51047156 None:intergenic 45.0%
CTGCTGGTATAAGCTACAGA+AGG - chr8_4:51047175-51047194 Msa1331490:CDS 45.0%
ATGCCGAATTACGTCCAACA+TGG - chr8_4:51047216-51047235 Msa1331490:CDS 45.0%
!! GCAGAGCTTGCTAACAAAAC+AGG - chr8_4:51047264-51047283 Msa1331490:CDS 45.0%
!! GGCTGCTGAAAAACTTGTTG+AGG - chr8_4:51047296-51047315 Msa1331490:CDS 45.0%
!! ACTTAGGAGGTGGCTTTGAT+GGG + chr8_4:51047395-51047414 None:intergenic 45.0%
!! AACTTAGGAGGTGGCTTTGA+TGG + chr8_4:51047396-51047415 None:intergenic 45.0%
GCCACCTCCTAAGTTTAAAC+TGG - chr8_4:51047401-51047420 Msa1331490:CDS 45.0%
GAAGTTGGAACCGATCCTAA+TGG - chr8_4:51047459-51047478 Msa1331490:CDS 45.0%
CATTGCAACAAAGGATTCGC+CGG - chr8_4:51047494-51047513 Msa1331490:CDS 45.0%
! AGAGACGAAGCATCTAGTTC+CGG + chr8_4:51047516-51047535 None:intergenic 45.0%
GATGCTTCGTCTCTGGTAAT+TGG - chr8_4:51047522-51047541 Msa1331490:CDS 45.0%
CTTCGTCTCTGGTAATTGGA+AGG - chr8_4:51047526-51047545 Msa1331490:CDS 45.0%
CGAAGCTTATAGGAGACAAG+AGG - chr8_4:51047804-51047823 Msa1331490:CDS 45.0%
GGGAACTTCGCAGTACTCTT+GGG + chr8_4:51046777-51046796 None:intergenic 50.0%
AGGGAACTTCGCAGTACTCT+TGG + chr8_4:51046778-51046797 None:intergenic 50.0%
GTCTTCTTCTGCTCTTGCTC+TGG + chr8_4:51046968-51046987 None:intergenic 50.0%
TCCATTGATCGGGAACCAGT+TGG - chr8_4:51047078-51047097 Msa1331490:CDS 50.0%
! ACCAACTGGTTCCCGATCAA+TGG + chr8_4:51047082-51047101 None:intergenic 50.0%
TATGGAGATGATGTCCCTGC+AGG - chr8_4:51047120-51047139 Msa1331490:CDS 50.0%
CTAAACCTCTCAACTCCTGC+AGG + chr8_4:51047138-51047157 None:intergenic 50.0%
AAGATTGTCAGTGGAGCTGC+TGG - chr8_4:51047159-51047178 Msa1331490:CDS 50.0%
CCGCCATGTTGGACGTAATT+CGG + chr8_4:51047222-51047241 None:intergenic 50.0%
CCGAATTACGTCCAACATGG+CGG - chr8_4:51047219-51047238 Msa1331490:CDS 50.0%
ATGGCGGCCTTAGATCCTAT+GGG - chr8_4:51047235-51047254 Msa1331490:CDS 50.0%
CATCCACCCCATAGGATCTA+AGG + chr8_4:51047245-51047264 None:intergenic 50.0%
!!! CCAGCCACATTTTTAGTCCC+AGG + chr8_4:51047348-51047367 None:intergenic 50.0%
CCTGGGACTAAAAATGTGGC+TGG - chr8_4:51047345-51047364 Msa1331490:CDS 50.0%
GGAACTAGATGCTTCGTCTC+TGG - chr8_4:51047515-51047534 Msa1331490:CDS 50.0%
GTCTCTGGTAATTGGAAGGG+TGG - chr8_4:51047530-51047549 Msa1331490:CDS 50.0%
CTGGTAATTGGAAGGGTGGT+AGG - chr8_4:51047534-51047553 Msa1331490:CDS 50.0%
GTAATTGGAAGGGTGGTAGG+AGG - chr8_4:51047537-51047556 Msa1331490:CDS 50.0%
AACAGGGTGGCGAAGCTTAT+AGG - chr8_4:51047794-51047813 Msa1331490:CDS 50.0%
AGGGCTGTTGTTGCAGAAAG+AGG - chr8_4:51047824-51047843 Msa1331490:CDS 50.0%
TGGCAGACGGCAAATAGAGT+TGG + chr8_4:51047993-51048012 None:intergenic 50.0%
GGGAACTTCGCAGTACTCTT+GGG + chr8_4:51046777-51046796 None:intergenic 50.0%
AGGGAACTTCGCAGTACTCT+TGG + chr8_4:51046778-51046797 None:intergenic 50.0%
GTCTTCTTCTGCTCTTGCTC+TGG + chr8_4:51046968-51046987 None:intergenic 50.0%
TCCATTGATCGGGAACCAGT+TGG - chr8_4:51047078-51047097 Msa1331490:CDS 50.0%
! ACCAACTGGTTCCCGATCAA+TGG + chr8_4:51047082-51047101 None:intergenic 50.0%
TATGGAGATGATGTCCCTGC+AGG - chr8_4:51047120-51047139 Msa1331490:CDS 50.0%
CTAAACCTCTCAACTCCTGC+AGG + chr8_4:51047138-51047157 None:intergenic 50.0%
AAGATTGTCAGTGGAGCTGC+TGG - chr8_4:51047159-51047178 Msa1331490:CDS 50.0%
CCGCCATGTTGGACGTAATT+CGG + chr8_4:51047222-51047241 None:intergenic 50.0%
CCGAATTACGTCCAACATGG+CGG - chr8_4:51047219-51047238 Msa1331490:CDS 50.0%
ATGGCGGCCTTAGATCCTAT+GGG - chr8_4:51047235-51047254 Msa1331490:CDS 50.0%
CATCCACCCCATAGGATCTA+AGG + chr8_4:51047245-51047264 None:intergenic 50.0%
!!! CCAGCCACATTTTTAGTCCC+AGG + chr8_4:51047348-51047367 None:intergenic 50.0%
CCTGGGACTAAAAATGTGGC+TGG - chr8_4:51047345-51047364 Msa1331490:CDS 50.0%
GGAACTAGATGCTTCGTCTC+TGG - chr8_4:51047515-51047534 Msa1331490:CDS 50.0%
GTCTCTGGTAATTGGAAGGG+TGG - chr8_4:51047530-51047549 Msa1331490:CDS 50.0%
CTGGTAATTGGAAGGGTGGT+AGG - chr8_4:51047534-51047553 Msa1331490:CDS 50.0%
GTAATTGGAAGGGTGGTAGG+AGG - chr8_4:51047537-51047556 Msa1331490:CDS 50.0%
AACAGGGTGGCGAAGCTTAT+AGG - chr8_4:51047794-51047813 Msa1331490:CDS 50.0%
AGGGCTGTTGTTGCAGAAAG+AGG - chr8_4:51047824-51047843 Msa1331490:CDS 50.0%
TGGCAGACGGCAAATAGAGT+TGG + chr8_4:51047993-51048012 None:intergenic 50.0%
ATGTCCCTGCAGGAGTTGAG+AGG - chr8_4:51047130-51047149 Msa1331490:CDS 55.0%
! AGGATCTAAGGCCGCCATGT+TGG + chr8_4:51047233-51047252 None:intergenic 55.0%
CATGGCGGCCTTAGATCCTA+TGG - chr8_4:51047234-51047253 Msa1331490:CDS 55.0%
TGGCGGCCTTAGATCCTATG+GGG - chr8_4:51047236-51047255 Msa1331490:CDS 55.0%
AAGCTCTGCATCCACCCCAT+AGG + chr8_4:51047253-51047272 None:intergenic 55.0%
TGGAAGGGTGGTAGGAGGAA+TGG - chr8_4:51047542-51047561 Msa1331490:CDS 55.0%
AAGGGTGGTAGGAGGAATGG+AGG - chr8_4:51047545-51047564 Msa1331490:CDS 55.0%
ATGTCCCTGCAGGAGTTGAG+AGG - chr8_4:51047130-51047149 Msa1331490:CDS 55.0%
! AGGATCTAAGGCCGCCATGT+TGG + chr8_4:51047233-51047252 None:intergenic 55.0%
CATGGCGGCCTTAGATCCTA+TGG - chr8_4:51047234-51047253 Msa1331490:CDS 55.0%
TGGCGGCCTTAGATCCTATG+GGG - chr8_4:51047236-51047255 Msa1331490:CDS 55.0%
AAGCTCTGCATCCACCCCAT+AGG + chr8_4:51047253-51047272 None:intergenic 55.0%
TGGAAGGGTGGTAGGAGGAA+TGG - chr8_4:51047542-51047561 Msa1331490:CDS 55.0%
AAGGGTGGTAGGAGGAATGG+AGG - chr8_4:51047545-51047564 Msa1331490:CDS 55.0%
CGGCCTTAGATCCTATGGGG+TGG - chr8_4:51047239-51047258 Msa1331490:CDS 60.0%
CGGCCTTAGATCCTATGGGG+TGG - chr8_4:51047239-51047258 Msa1331490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51046563 51048049 51046563 ID=Msa1331490;Name=Msa1331490
chr8_4 mRNA 51046563 51048049 51046563 ID=Msa1331490-mRNA-1;Parent=Msa1331490;Name=Msa1331490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=200|1|1|1|1|1|2|148|322
chr8_4 exon 51046563 51046813 51046563 ID=Msa1331490-mRNA-1:exon:15010;Parent=Msa1331490-mRNA-1
chr8_4 exon 51046984 51048049 51046984 ID=Msa1331490-mRNA-1:exon:15009;Parent=Msa1331490-mRNA-1
chr8_4 five_prime_UTR 51047850 51048049 51047850 ID=Msa1331490-mRNA-1:five_prime_utr;Parent=Msa1331490-mRNA-1
chr8_4 CDS 51046984 51047849 51046984 ID=Msa1331490-mRNA-1:cds;Parent=Msa1331490-mRNA-1
chr8_4 CDS 51046711 51046813 51046711 ID=Msa1331490-mRNA-1:cds;Parent=Msa1331490-mRNA-1
chr8_4 three_prime_UTR 51046563 51046710 51046563 ID=Msa1331490-mRNA-1:three_prime_utr;Parent=Msa1331490-mRNA-1
Gene Sequence

>Msa1331490

ATGCTACAACACCCAAGAGTACTGCGAAGTTCCCTTCAACCCTTCAACCCTTCATCTCATACAACAGCACTATCACATTCATCATTCCAACTGTTACCAACTACACCACATTTTCCGAACCTCAAACAGCAATGCAGATTGTCGCGTAGAGAGCTCGCAATCTACAGCAATACTTGCTTGCTGCTTCTTTTGGGTAATGGATCCAGAGCAAGAGCAGAAGAAGACGTTACCAACAGTGACAAACTAGGAGATGATTTGACTAAAACTCCCAGCTGCACTGAAAGAAAACCAACAAAACAAGTTTTCTTTGACGTATCCATTGATCGGGAACCAGTTGGTCGCGTTACTATAGAGCTTTATGGAGATGATGTCCCTGCAGGAGTTGAGAGGTTTAGCAAGATTGTCAGTGGAGCTGCTGGTATAAGCTACAGAAGGAAAGAGTTTGTCAAAATCATGCCGAATTACGTCCAACATGGCGGCCTTAGATCCTATGGGGTGGATGCAGAGCTTGCTAACAAAACAGGAAGCAATTTGGCTGCTGAAAAACTTGTTGAGGAATGGGAGAGAATGTATGAGAAATGTCCTGGGACTAAAAATGTGGCTGGTAGTGTAGGAATCATTGTGAGAGACCCATCAAAGCCACCTCCTAAGTTTAAACTGGTTGCAAGACTAGGGAAGCTAGAGATTGATCAAGAAGAAGTTGGAACCGATCCTAATGGGACAGAATTTGTCATTGCAACAAAGGATTCGCCGGAACTAGATGCTTCGTCTCTGGTAATTGGAAGGGTGGTAGGAGGAATGGAGGTTGTACAGAAGATTAGTCAGGTAAAAACTGTACAAGAGAACACGAGCTCTCCATATTTTAGGGTGGCGAAGCTTATAGGAGACAAGAGGGCTGTTGTTGCAGAAAGAGGATTCAACCGCCCTTATTCCAAAGTTGTCATTACAAACTGTGGTGTAATACAGTAG

Protein sequence

>Msa1331490

MLQHPRVLRSSLQPFNPSSHTTALSHSSFQLLPTTPHFPNLKQQCRLSRRELAIYSNTCLLLLLGNGSRARAEEDVTNSDKLGDDLTKTPSCTERKPTKQVFFDVSIDREPVGRVTIELYGDDVPAGVERFSKIVSGAAGISYRRKEFVKIMPNYVQHGGLRSYGVDAELANKTGSNLAAEKLVEEWERMYEKCPGTKNVAGSVGIIVRDPSKPPPKFKLVARLGKLEIDQEEVGTDPNGTEFVIATKDSPELDASSLVIGRVVGGMEVVQKISQVKTVQENTSSPYFRVAKLIGDKRAVVAERGFNRPYSKVVITNCGVIQ*