Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40479.t1 | AES93721.1 | 66.8 | 346 | 17 | 2 | 7 | 254 | 3 | 348 | 8.10E-120 | 439.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40479.t1 | Q8GYB8 | 49.9 | 369 | 70 | 3 | 1 | 254 | 3 | 371 | 2.5e-93 | 343.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40479.t1 | G7K3R8 | 66.8 | 346 | 17 | 2 | 7 | 254 | 3 | 348 | 5.8e-120 | 439.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene40479 | 0.825379 | 4.84E-54 | -1.69E-46 |
| MS.gene049171 | MS.gene40479 | 0.841607 | 4.29E-58 | -1.69E-46 |
| MS.gene049173 | MS.gene40479 | 0.802194 | 6.30E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene40479 | 0.861556 | 9.44E-64 | -1.69E-46 |
| MS.gene049222 | MS.gene40479 | 0.883504 | 4.24E-71 | -1.69E-46 |
| MS.gene049232 | MS.gene40479 | 0.83161 | 1.51E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene40479 | 0.864515 | 1.15E-64 | -1.69E-46 |
| MS.gene049320 | MS.gene40479 | 0.862439 | 5.07E-64 | -1.69E-46 |
| MS.gene049369 | MS.gene40479 | 0.829956 | 3.85E-55 | -1.69E-46 |
| MS.gene049396 | MS.gene40479 | 0.820808 | 5.64E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene40479 | 0.875826 | 2.27E-68 | -1.69E-46 |
| MS.gene049633 | MS.gene40479 | 0.83387 | 4.16E-56 | -1.69E-46 |
| MS.gene049805 | MS.gene40479 | 0.872162 | 3.93E-67 | -1.69E-46 |
| MS.gene05010 | MS.gene40479 | 0.844193 | 8.80E-59 | -1.69E-46 |
| MS.gene050163 | MS.gene40479 | 0.822575 | 2.20E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene40479 | 0.806624 | 7.51E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene40479 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene40479 | 0.831004 | 2.13E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene40479 | 0.806108 | 9.65E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene40479 | 0.80282 | 4.68E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene40479 | 0.838841 | 2.26E-57 | -1.69E-46 |
| MS.gene050518 | MS.gene40479 | 0.821971 | 3.04E-53 | -1.69E-46 |
| MS.gene050538 | MS.gene40479 | 0.822547 | 2.23E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene40479 | 0.81938 | 1.20E-52 | -1.69E-46 |
| MS.gene050593 | MS.gene40479 | 0.837216 | 5.92E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene40479 | 0.826991 | 2.00E-54 | -1.69E-46 |
| MS.gene050662 | MS.gene40479 | 0.814358 | 1.60E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene40479 | 0.818188 | 2.23E-52 | -1.69E-46 |
| MS.gene050686 | MS.gene40479 | 0.826971 | 2.02E-54 | -1.69E-46 |
| MS.gene050690 | MS.gene40479 | 0.812276 | 4.60E-51 | -1.69E-46 |
| MS.gene050699 | MS.gene40479 | 0.838595 | 2.62E-57 | -1.69E-46 |
| MS.gene050747 | MS.gene40479 | 0.890842 | 6.83E-74 | -1.69E-46 |
| MS.gene050772 | MS.gene40479 | 0.890996 | 5.94E-74 | -1.69E-46 |
| MS.gene05080 | MS.gene40479 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene050868 | MS.gene40479 | 0.847249 | 1.30E-59 | -1.69E-46 |
| MS.gene050871 | MS.gene40479 | 0.847616 | 1.03E-59 | -1.69E-46 |
| MS.gene050950 | MS.gene40479 | 0.882612 | 9.00E-71 | -1.69E-46 |
| MS.gene050986 | MS.gene40479 | 0.821043 | 4.98E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene40479 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene05105 | MS.gene40479 | 0.804412 | 2.19E-49 | -1.69E-46 |
| MS.gene051113 | MS.gene40479 | -0.815918 | 7.23E-52 | -1.69E-46 |
| MS.gene051167 | MS.gene40479 | -0.838016 | 3.69E-57 | -1.69E-46 |
| MS.gene051228 | MS.gene40479 | 0.804877 | 1.75E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene40479 | 0.832606 | 8.59E-56 | -1.69E-46 |
| MS.gene051438 | MS.gene40479 | 0.81213 | 4.95E-51 | -1.69E-46 |
| MS.gene051551 | MS.gene40479 | 0.830629 | 2.64E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene40479 | 0.841065 | 5.96E-58 | -1.69E-46 |
| MS.gene051692 | MS.gene40479 | 0.818419 | 1.98E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene40479 | 0.847111 | 1.42E-59 | -1.69E-46 |
| MS.gene051810 | MS.gene40479 | 0.815692 | 8.12E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene40479 | 0.85121 | 1.03E-60 | -1.69E-46 |
| MS.gene051858 | MS.gene40479 | 0.844275 | 8.36E-59 | -1.69E-46 |
| MS.gene051874 | MS.gene40479 | 0.800757 | 1.24E-48 | -1.69E-46 |
| MS.gene052164 | MS.gene40479 | 0.852489 | 4.46E-61 | -1.69E-46 |
| MS.gene052271 | MS.gene40479 | 0.806207 | 9.20E-50 | -1.69E-46 |
| MS.gene052346 | MS.gene40479 | 0.80987 | 1.53E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene40479 | 0.827398 | 1.60E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene40479 | 0.837428 | 5.23E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene40479 | 0.803447 | 3.47E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene40479 | 0.811057 | 8.47E-51 | -1.69E-46 |
| MS.gene052501 | MS.gene40479 | 0.840913 | 6.53E-58 | -1.69E-46 |
| MS.gene052503 | MS.gene40479 | 0.867181 | 1.65E-65 | -1.69E-46 |
| MS.gene052505 | MS.gene40479 | 0.829553 | 4.83E-55 | -1.69E-46 |
| MS.gene052506 | MS.gene40479 | 0.838175 | 3.36E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene40479 | 0.862817 | 3.87E-64 | -1.69E-46 |
| MS.gene052822 | MS.gene40479 | 0.841301 | 5.16E-58 | -1.69E-46 |
| MS.gene052823 | MS.gene40479 | 0.863342 | 2.67E-64 | -1.69E-46 |
| MS.gene052825 | MS.gene40479 | 0.861581 | 9.28E-64 | -1.69E-46 |
| MS.gene052916 | MS.gene40479 | 0.808258 | 3.38E-50 | -1.69E-46 |
| MS.gene052966 | MS.gene40479 | 0.825255 | 5.18E-54 | -1.69E-46 |
| MS.gene052982 | MS.gene40479 | 0.804513 | 2.08E-49 | -1.69E-46 |
| MS.gene053009 | MS.gene40479 | 0.807621 | 4.62E-50 | -1.69E-46 |
| MS.gene053018 | MS.gene40479 | 0.824269 | 8.85E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene40479 | 0.804647 | 1.95E-49 | -1.69E-46 |
| MS.gene053117 | MS.gene40479 | 0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene40479 | 0.848145 | 7.39E-60 | -1.69E-46 |
| MS.gene053207 | MS.gene40479 | 0.863384 | 2.59E-64 | -1.69E-46 |
| MS.gene053213 | MS.gene40479 | 0.885915 | 5.38E-72 | -1.69E-46 |
| MS.gene053286 | MS.gene40479 | 0.880207 | 6.64E-70 | -1.69E-46 |
| MS.gene053322 | MS.gene40479 | 0.806451 | 8.17E-50 | -1.69E-46 |
| MS.gene053421 | MS.gene40479 | -0.808531 | 2.96E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene40479 | 0.862333 | 5.46E-64 | -1.69E-46 |
| MS.gene053449 | MS.gene40479 | 0.817317 | 3.51E-52 | -1.69E-46 |
| MS.gene053479 | MS.gene40479 | 0.804115 | 2.52E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene40479 | 0.846033 | 2.80E-59 | -1.69E-46 |
| MS.gene053574 | MS.gene40479 | 0.883331 | 4.91E-71 | -1.69E-46 |
| MS.gene053626 | MS.gene40479 | 0.850191 | 1.99E-60 | -1.69E-46 |
| MS.gene053632 | MS.gene40479 | 0.88086 | 3.88E-70 | -1.69E-46 |
| MS.gene053813 | MS.gene40479 | 0.801067 | 1.07E-48 | -1.69E-46 |
| MS.gene053824 | MS.gene40479 | 0.866392 | 2.95E-65 | -1.69E-46 |
| MS.gene053912 | MS.gene40479 | 0.823342 | 1.46E-53 | -1.69E-46 |
| MS.gene053916 | MS.gene40479 | 0.860564 | 1.89E-63 | -1.69E-46 |
| MS.gene054003 | MS.gene40479 | 0.844559 | 7.01E-59 | -1.69E-46 |
| MS.gene054408 | MS.gene40479 | 0.854602 | 1.10E-61 | -1.69E-46 |
| MS.gene054595 | MS.gene40479 | 0.849229 | 3.70E-60 | -1.69E-46 |
| MS.gene054600 | MS.gene40479 | 0.863779 | 1.95E-64 | -1.69E-46 |
| MS.gene054642 | MS.gene40479 | 0.873598 | 1.30E-67 | -1.69E-46 |
| MS.gene054706 | MS.gene40479 | -0.804097 | 2.54E-49 | -1.69E-46 |
| MS.gene05470 | MS.gene40479 | 0.806306 | 8.77E-50 | -1.69E-46 |
| MS.gene054927 | MS.gene40479 | 0.865648 | 5.07E-65 | -1.69E-46 |
| MS.gene05494 | MS.gene40479 | 0.842312 | 2.79E-58 | -1.69E-46 |
| MS.gene054954 | MS.gene40479 | 0.836976 | 6.82E-57 | -1.69E-46 |
| MS.gene05505 | MS.gene40479 | 0.880231 | 6.51E-70 | -1.69E-46 |
| MS.gene055206 | MS.gene40479 | 0.862921 | 3.60E-64 | -1.69E-46 |
| MS.gene055212 | MS.gene40479 | 0.830024 | 3.71E-55 | -1.69E-46 |
| MS.gene055224 | MS.gene40479 | 0.82309 | 1.67E-53 | -1.69E-46 |
| MS.gene055289 | MS.gene40479 | 0.855212 | 7.34E-62 | -1.69E-46 |
| MS.gene055362 | MS.gene40479 | 0.869993 | 2.04E-66 | -1.69E-46 |
| MS.gene055486 | MS.gene40479 | 0.82738 | 1.62E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene40479 | 0.852193 | 5.42E-61 | -1.69E-46 |
| MS.gene055577 | MS.gene40479 | 0.847649 | 1.01E-59 | -1.69E-46 |
| MS.gene055722 | MS.gene40479 | 0.877722 | 5.00E-69 | -1.69E-46 |
| MS.gene055750 | MS.gene40479 | 0.805718 | 1.17E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene40479 | 0.816502 | 5.35E-52 | -1.69E-46 |
| MS.gene055909 | MS.gene40479 | 0.819971 | 8.78E-53 | -1.69E-46 |
| MS.gene055911 | MS.gene40479 | 0.814466 | 1.52E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene40479 | 0.835541 | 1.58E-56 | -1.69E-46 |
| MS.gene055941 | MS.gene40479 | 0.857884 | 1.20E-62 | -1.69E-46 |
| MS.gene056046 | MS.gene40479 | 0.814732 | 1.33E-51 | -1.69E-46 |
| MS.gene056083 | MS.gene40479 | 0.833306 | 5.75E-56 | -1.69E-46 |
| MS.gene056166 | MS.gene40479 | 0.841181 | 5.55E-58 | -1.69E-46 |
| MS.gene056374 | MS.gene40479 | 0.846399 | 2.23E-59 | -1.69E-46 |
| MS.gene056387 | MS.gene40479 | 0.805992 | 1.02E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene40479 | 0.806193 | 9.26E-50 | -1.69E-46 |
| MS.gene056446 | MS.gene40479 | 0.813449 | 2.54E-51 | -1.69E-46 |
| MS.gene056448 | MS.gene40479 | 0.855306 | 6.89E-62 | -1.69E-46 |
| MS.gene056487 | MS.gene40479 | 0.839857 | 1.23E-57 | -1.69E-46 |
| MS.gene056504 | MS.gene40479 | 0.843276 | 1.55E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene40479 | 0.846738 | 1.80E-59 | -1.69E-46 |
| MS.gene056511 | MS.gene40479 | 0.842682 | 2.23E-58 | -1.69E-46 |
| MS.gene05664 | MS.gene40479 | 0.811683 | 6.19E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene40479 | 0.871277 | 7.73E-67 | -1.69E-46 |
| MS.gene05666 | MS.gene40479 | 0.827983 | 1.16E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene40479 | 0.802222 | 6.21E-49 | -1.69E-46 |
| MS.gene056878 | MS.gene40479 | 0.806596 | 7.62E-50 | -1.69E-46 |
| MS.gene057048 | MS.gene40479 | 0.801917 | 7.18E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene40479 | 0.841592 | 4.33E-58 | -1.69E-46 |
| MS.gene057086 | MS.gene40479 | 0.821379 | 4.17E-53 | -1.69E-46 |
| MS.gene057129 | MS.gene40479 | 0.817383 | 3.39E-52 | -1.69E-46 |
| MS.gene057146 | MS.gene40479 | 0.824374 | 8.35E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene40479 | 0.828164 | 1.05E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene40479 | 0.881404 | 2.47E-70 | -1.69E-46 |
| MS.gene057658 | MS.gene40479 | 0.814565 | 1.44E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene40479 | 0.852861 | 3.50E-61 | -1.69E-46 |
| MS.gene057831 | MS.gene40479 | 0.823628 | 1.25E-53 | -1.69E-46 |
| MS.gene057856 | MS.gene40479 | 0.828742 | 7.59E-55 | -1.69E-46 |
| MS.gene057857 | MS.gene40479 | 0.812639 | 3.83E-51 | -1.69E-46 |
| MS.gene05787 | MS.gene40479 | 0.825434 | 4.70E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene40479 | 0.835427 | 1.69E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene40479 | 0.803667 | 3.13E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene40479 | 0.840903 | 6.57E-58 | -1.69E-46 |
| MS.gene058157 | MS.gene40479 | 0.832424 | 9.53E-56 | -1.69E-46 |
| MS.gene058323 | MS.gene40479 | 0.818717 | 1.69E-52 | -1.69E-46 |
| MS.gene058338 | MS.gene40479 | 0.833148 | 6.30E-56 | -1.69E-46 |
| MS.gene058376 | MS.gene40479 | 0.803741 | 3.02E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene40479 | 0.84123 | 5.39E-58 | -1.69E-46 |
| MS.gene058419 | MS.gene40479 | 0.863492 | 2.39E-64 | -1.69E-46 |
| MS.gene058544 | MS.gene40479 | 0.855613 | 5.61E-62 | -1.69E-46 |
| MS.gene058723 | MS.gene40479 | 0.828215 | 1.02E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene40479 | 0.841996 | 3.39E-58 | -1.69E-46 |
| MS.gene058838 | MS.gene40479 | 0.835156 | 1.98E-56 | -1.69E-46 |
| MS.gene05883 | MS.gene40479 | 0.820565 | 6.41E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene40479 | 0.851541 | 8.30E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene40479 | 0.841779 | 3.86E-58 | -1.69E-46 |
| MS.gene05913 | MS.gene40479 | 0.83582 | 1.34E-56 | -1.69E-46 |
| MS.gene059305 | MS.gene40479 | 0.808977 | 2.38E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene40479 | 0.84672 | 1.82E-59 | -1.69E-46 |
| MS.gene059367 | MS.gene40479 | 0.832132 | 1.13E-55 | -1.69E-46 |
| MS.gene059368 | MS.gene40479 | 0.821661 | 3.59E-53 | -1.69E-46 |
| MS.gene059455 | MS.gene40479 | 0.816803 | 4.58E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene40479 | 0.81674 | 4.73E-52 | -1.69E-46 |
| MS.gene059667 | MS.gene40479 | 0.813351 | 2.67E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene40479 | 0.849848 | 2.48E-60 | -1.69E-46 |
| MS.gene059711 | MS.gene40479 | 0.836773 | 7.69E-57 | -1.69E-46 |
| MS.gene059718 | MS.gene40479 | 0.874322 | 7.39E-68 | -1.69E-46 |
| MS.gene059756 | MS.gene40479 | 0.8078 | 4.23E-50 | -1.69E-46 |
| MS.gene059801 | MS.gene40479 | 0.817595 | 3.04E-52 | -1.69E-46 |
| MS.gene059865 | MS.gene40479 | 0.833032 | 6.73E-56 | -1.69E-46 |
| MS.gene059902 | MS.gene40479 | 0.838779 | 2.35E-57 | -1.69E-46 |
| MS.gene060341 | MS.gene40479 | 0.812536 | 4.04E-51 | -1.69E-46 |
| MS.gene060482 | MS.gene40479 | 0.872236 | 3.71E-67 | -1.69E-46 |
| MS.gene060703 | MS.gene40479 | 0.800634 | 1.31E-48 | -1.69E-46 |
| MS.gene060728 | MS.gene40479 | 0.803962 | 2.71E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene40479 | 0.838951 | 2.12E-57 | -1.69E-46 |
| MS.gene060778 | MS.gene40479 | 0.823474 | 1.36E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene40479 | 0.838124 | 3.46E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene40479 | 0.848495 | 5.91E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene40479 | 0.830663 | 2.59E-55 | -1.69E-46 |
| MS.gene060835 | MS.gene40479 | 0.839955 | 1.16E-57 | -1.69E-46 |
| MS.gene060837 | MS.gene40479 | 0.866052 | 3.78E-65 | -1.69E-46 |
| MS.gene06092 | MS.gene40479 | 0.862319 | 5.51E-64 | -1.69E-46 |
| MS.gene06097 | MS.gene40479 | 0.824696 | 7.02E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene40479 | 0.818868 | 1.57E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene40479 | 0.833387 | 5.49E-56 | -1.69E-46 |
| MS.gene061134 | MS.gene40479 | 0.819507 | 1.12E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene40479 | 0.823511 | 1.33E-53 | -1.69E-46 |
| MS.gene061200 | MS.gene40479 | 0.820922 | 5.31E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40479.t1 | MTR_5g006720 | 60.345 | 348 | 39 | 3 | 6 | 254 | 5 | 352 | 1.92e-138 | 393 |
| MS.gene40479.t1 | MTR_5g006740 | 73.790 | 248 | 37 | 3 | 7 | 233 | 3 | 243 | 1.69e-123 | 355 |
| MS.gene40479.t1 | MTR_5g006740 | 71.591 | 88 | 20 | 1 | 172 | 254 | 261 | 348 | 4.46e-36 | 131 |
| MS.gene40479.t1 | MTR_5g006740 | 68.679 | 265 | 38 | 3 | 7 | 233 | 3 | 260 | 9.54e-121 | 348 |
| MS.gene40479.t1 | MTR_5g006740 | 71.591 | 88 | 20 | 1 | 172 | 254 | 278 | 365 | 4.85e-36 | 131 |
| MS.gene40479.t1 | MTR_5g006800 | 63.469 | 271 | 54 | 3 | 1 | 233 | 1 | 264 | 9.96e-110 | 321 |
| MS.gene40479.t1 | MTR_5g006800 | 83.077 | 65 | 11 | 0 | 190 | 254 | 305 | 369 | 2.78e-33 | 124 |
| MS.gene40479.t1 | MTR_5g006780 | 62.637 | 273 | 55 | 4 | 1 | 233 | 1 | 266 | 1.09e-107 | 316 |
| MS.gene40479.t1 | MTR_5g006780 | 83.077 | 65 | 11 | 0 | 190 | 254 | 307 | 371 | 3.40e-33 | 124 |
| MS.gene40479.t1 | MTR_5g006670 | 62.406 | 266 | 49 | 6 | 7 | 234 | 3 | 255 | 1.19e-103 | 305 |
| MS.gene40479.t1 | MTR_5g006670 | 84.615 | 65 | 10 | 0 | 190 | 254 | 295 | 359 | 2.08e-34 | 127 |
| MS.gene40479.t1 | MTR_5g006750 | 60.806 | 273 | 60 | 5 | 1 | 233 | 1 | 266 | 1.72e-103 | 305 |
| MS.gene40479.t1 | MTR_5g008040 | 59.191 | 272 | 66 | 4 | 1 | 234 | 3 | 267 | 4.60e-101 | 299 |
| MS.gene40479.t1 | MTR_5g008040 | 60.396 | 101 | 26 | 1 | 167 | 253 | 270 | 370 | 1.42e-33 | 125 |
| MS.gene40479.t1 | MTR_5g006710 | 59.926 | 272 | 58 | 4 | 1 | 234 | 1 | 259 | 1.95e-100 | 297 |
| MS.gene40479.t1 | MTR_5g006710 | 81.538 | 65 | 12 | 0 | 190 | 254 | 299 | 363 | 3.65e-33 | 124 |
| MS.gene40479.t1 | MTR_3g115600 | 57.143 | 231 | 55 | 4 | 1 | 193 | 1 | 225 | 1.45e-82 | 251 |
| MS.gene40479.t1 | MTR_3g115600 | 61.538 | 65 | 25 | 0 | 190 | 254 | 299 | 363 | 1.64e-22 | 95.1 |
| MS.gene40479.t1 | MTR_4g125470 | 46.188 | 223 | 78 | 3 | 12 | 193 | 19 | 240 | 1.20e-57 | 189 |
| MS.gene40479.t1 | MTR_4g125470 | 65.625 | 64 | 22 | 0 | 190 | 253 | 325 | 388 | 4.47e-24 | 99.8 |
| MS.gene40479.t1 | MTR_5g006730 | 79.487 | 78 | 16 | 0 | 1 | 78 | 1 | 78 | 2.74e-38 | 131 |
| MS.gene40479.t1 | MTR_3g096570 | 82.456 | 57 | 10 | 0 | 137 | 193 | 8 | 64 | 7.16e-28 | 107 |
| MS.gene40479.t1 | MTR_3g096562 | 70.149 | 67 | 20 | 0 | 127 | 193 | 162 | 228 | 3.20e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40479.t1 | AT1G76690 | 61.842 | 228 | 49 | 2 | 1 | 190 | 3 | 230 | 3.94e-94 | 281 |
| MS.gene40479.t1 | AT1G76690 | 67.692 | 65 | 21 | 0 | 190 | 254 | 307 | 371 | 4.47e-26 | 105 |
| MS.gene40479.t1 | AT1G76680 | 61.404 | 228 | 50 | 2 | 1 | 190 | 1 | 228 | 5.40e-92 | 276 |
| MS.gene40479.t1 | AT1G76680 | 66.154 | 65 | 22 | 0 | 190 | 254 | 305 | 369 | 4.53e-26 | 105 |
| MS.gene40479.t1 | AT1G76680 | 55.336 | 253 | 50 | 3 | 1 | 190 | 1 | 253 | 2.49e-86 | 262 |
| MS.gene40479.t1 | AT1G76680 | 66.154 | 65 | 22 | 0 | 190 | 254 | 330 | 394 | 5.92e-26 | 105 |
| MS.gene40479.t1 | AT1G17990 | 51.292 | 271 | 82 | 7 | 5 | 237 | 2 | 260 | 8.48e-86 | 256 |
| MS.gene40479.t1 | AT1G18020 | 51.292 | 271 | 82 | 7 | 5 | 237 | 2 | 260 | 8.48e-86 | 256 |
| MS.gene40479.t1 | AT1G17990 | 48.339 | 271 | 82 | 8 | 5 | 237 | 2 | 252 | 4.06e-77 | 234 |
| MS.gene40479.t1 | AT1G09400 | 54.028 | 211 | 53 | 2 | 18 | 190 | 1 | 205 | 1.32e-76 | 235 |
| MS.gene40479.t1 | AT1G09400 | 69.767 | 43 | 13 | 0 | 190 | 232 | 282 | 324 | 6.16e-14 | 70.9 |
| MS.gene40479.t1 | AT2G06050 | 42.678 | 239 | 86 | 4 | 1 | 193 | 1 | 234 | 1.26e-56 | 186 |
| MS.gene40479.t1 | AT2G06050 | 60.938 | 64 | 25 | 0 | 190 | 253 | 322 | 385 | 1.99e-22 | 95.1 |
| MS.gene40479.t1 | AT2G06050 | 42.678 | 239 | 86 | 4 | 1 | 193 | 1 | 234 | 1.26e-56 | 186 |
| MS.gene40479.t1 | AT2G06050 | 60.938 | 64 | 25 | 0 | 190 | 253 | 322 | 385 | 1.99e-22 | 95.1 |
| MS.gene40479.t1 | AT2G06050 | 42.678 | 239 | 86 | 4 | 1 | 193 | 1 | 234 | 1.26e-56 | 186 |
| MS.gene40479.t1 | AT2G06050 | 60.938 | 64 | 25 | 0 | 190 | 253 | 322 | 385 | 1.99e-22 | 95.1 |
| MS.gene40479.t1 | AT1G09400 | 67.568 | 111 | 30 | 1 | 80 | 190 | 42 | 146 | 1.76e-50 | 166 |
| MS.gene40479.t1 | AT1G09400 | 69.767 | 43 | 13 | 0 | 190 | 232 | 223 | 265 | 4.35e-14 | 70.5 |
Find 59 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGCTATAACTGAAAAT+AGG | 0.181027 | 5.3:+1782888 | MS.gene40479:CDS |
| TTAAAGTCATTGACAATATT+AGG | 0.218480 | 5.3:-1782214 | None:intergenic |
| CTCCTCTTAACAAGTATAAT+AGG | 0.235128 | 5.3:+1782981 | MS.gene40479:CDS |
| GCAAATCTCTTTGGTAAATC+TGG | 0.250222 | 5.3:-1782950 | None:intergenic |
| TACACTTCTGATCCAATTCT+TGG | 0.259451 | 5.3:+1783013 | MS.gene40479:CDS |
| AAATCGTTGTAGATTTGTTT+TGG | 0.271540 | 5.3:+1782583 | MS.gene40479:CDS |
| AGGGCAGATCTTATTGCTTA+TGG | 0.315216 | 5.3:+1782908 | MS.gene40479:CDS |
| GATAAGAAGACCACCTTTAG+AGG | 0.326530 | 5.3:-1781098 | None:intergenic |
| GATATTGGTGCTTGCCCATT+TGG | 0.334904 | 5.3:-1782097 | None:intergenic |
| AAACTACTCACACCACAAAT+TGG | 0.358876 | 5.3:+1782130 | MS.gene40479:CDS |
| GTCCATATACCTGGGGTGTC+TGG | 0.359717 | 5.3:-1781160 | None:intergenic |
| GCATTAAGTGCAAATCTCTT+TGG | 0.366211 | 5.3:-1782959 | None:intergenic |
| AGTTTGTCTGTTGAAGATAT+TGG | 0.380484 | 5.3:-1782112 | None:intergenic |
| TCCCTATTATACTTGTTAAG+AGG | 0.383924 | 5.3:-1782983 | None:intergenic |
| CTCATGGATCATTCAAGAAA+AGG | 0.395876 | 5.3:-1783049 | None:intergenic |
| CAATGCTATAACTGAAAATA+GGG | 0.397983 | 5.3:+1782889 | MS.gene40479:CDS |
| TTGAATTTGCCCATCTTGTA+AGG | 0.401075 | 5.3:-1780876 | None:intergenic |
| TCTTCTGTTCTTAGCCTCCT+TGG | 0.404793 | 5.3:-1782187 | None:intergenic |
| TCCTCTTAACAAGTATAATA+GGG | 0.422103 | 5.3:+1782982 | MS.gene40479:CDS |
| GCAAATTCAATCTCTCTCAT+AGG | 0.425449 | 5.3:+1780889 | MS.gene40479:CDS |
| CATACAGTTTGTCAACCAAA+TGG | 0.430266 | 5.3:+1782082 | MS.gene40479:intron |
| GTACCATCACCTCCAATTTG+TGG | 0.439210 | 5.3:-1782142 | None:intergenic |
| CTCACTAGAATAAGATCATA+TGG | 0.451776 | 5.3:+1781031 | MS.gene40479:CDS |
| TCTTATTACACCTTACAAGA+TGG | 0.451798 | 5.3:+1780866 | MS.gene40479:CDS |
| TAGTCGGTATAACCAAGAAT+TGG | 0.464873 | 5.3:-1783025 | None:intergenic |
| AACGACAGAACAGATGAATA+TGG | 0.465016 | 5.3:+1782548 | MS.gene40479:CDS |
| TCATGGATCATTCAAGAAAA+GGG | 0.465755 | 5.3:-1783048 | None:intergenic |
| AGGACCTCTGAGAGTAATAG+AGG | 0.468360 | 5.3:-1781078 | None:intergenic |
| TAGAGGATGGCATGAGGTTG+TGG | 0.468564 | 5.3:-1781061 | None:intergenic |
| TAAGGTGTAATAAGAGGAAT+GGG | 0.482782 | 5.3:-1780858 | None:intergenic |
| TTTGATGGGGTTGAAATCCA+TGG | 0.500651 | 5.3:+1782482 | MS.gene40479:CDS |
| GTAAGGTGTAATAAGAGGAA+TGG | 0.511089 | 5.3:-1780859 | None:intergenic |
| GAAGCTATTGCAAATGAGAT+AGG | 0.513935 | 5.3:+1782614 | MS.gene40479:CDS |
| CTTATTACACCTTACAAGAT+GGG | 0.515387 | 5.3:+1780867 | MS.gene40479:CDS |
| CTTCTTATCGCTGAAGCTAC+CGG | 0.516845 | 5.3:+1781112 | MS.gene40479:CDS |
| ATCTTGTAAGGTGTAATAAG+AGG | 0.519989 | 5.3:-1780864 | None:intergenic |
| TCTGTTCTTAGCCTCCTTGG+TGG | 0.522540 | 5.3:-1782184 | None:intergenic |
| ATACAGTTTGTCAACCAAAT+GGG | 0.523723 | 5.3:+1782083 | MS.gene40479:intron |
| CTCCTTGGTGGTGTGAATTG+TGG | 0.527123 | 5.3:-1782172 | None:intergenic |
| CTTTCATGAATTGTTCAAGT+AGG | 0.530510 | 5.3:-1782517 | None:intergenic |
| GTTGAAATCCATGGAGCTCA+TGG | 0.532007 | 5.3:+1782491 | MS.gene40479:CDS |
| GCAAGAAATGCTATTGAAGC+TGG | 0.534377 | 5.3:+1782244 | MS.gene40479:CDS |
| TACTCTCAGAGGTCCTCTAA+AGG | 0.549191 | 5.3:+1781085 | MS.gene40479:CDS |
| ACACCACAAATTGGAGGTGA+TGG | 0.561195 | 5.3:+1782139 | MS.gene40479:CDS |
| CTACTCACACCACAAATTGG+AGG | 0.577932 | 5.3:+1782133 | MS.gene40479:CDS |
| CAAGGATATCCAGACACCCC+AGG | 0.595672 | 5.3:+1781151 | MS.gene40479:CDS |
| GTAGGTAGCCATGAGCTCCA+TGG | 0.595976 | 5.3:-1782499 | None:intergenic |
| TATGATCTTATTCTAGTGAG+TGG | 0.602551 | 5.3:-1781028 | None:intergenic |
| GGTGTATCTGATACCGCTCA+AGG | 0.616814 | 5.3:+1781133 | MS.gene40479:CDS |
| CCATCCTCTATTACTCTCAG+AGG | 0.623632 | 5.3:+1781074 | MS.gene40479:CDS |
| TCATTCAAGAAAAGGGTAGT+CGG | 0.624730 | 5.3:-1783041 | None:intergenic |
| CCTCTGAGAGTAATAGAGGA+TGG | 0.634193 | 5.3:-1781074 | None:intergenic |
| TCTCAGAGGTCCTCTAAAGG+TGG | 0.653585 | 5.3:+1781088 | MS.gene40479:CDS |
| GAGTAATAGAGGATGGCATG+AGG | 0.655190 | 5.3:-1781067 | None:intergenic |
| GACAGAACAGATGAATATGG+TGG | 0.658731 | 5.3:+1782551 | MS.gene40479:CDS |
| TTGAGCGGTATCAGATACAC+CGG | 0.663000 | 5.3:-1781131 | None:intergenic |
| CACAATTCACACCACCAAGG+AGG | 0.702235 | 5.3:+1782173 | MS.gene40479:CDS |
| TGCCACAATTCACACCACCA+AGG | 0.706911 | 5.3:+1782170 | MS.gene40479:CDS |
| GGTGTCTGGATATCCTTGAG+CGG | 0.711074 | 5.3:-1781146 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGCTATTTTTTTTAATA+GGG | + | chr5.3:1781532-1781551 | MS.gene40479:intron | 10.0% |
| !! | AAATGTAATTAATATTGTGT+GGG | - | chr5.3:1781924-1781943 | None:intergenic | 15.0% |
| !! | AAATTGAATCAATTGAATTA+TGG | - | chr5.3:1782294-1782313 | None:intergenic | 15.0% |
| !! | AAGAAAGTAATAAATAGTTA+AGG | - | chr5.3:1781823-1781842 | None:intergenic | 15.0% |
| !!! | AAAATGCTATTTTGTTTAAT+AGG | - | chr5.3:1781360-1781379 | None:intergenic | 15.0% |
| !!! | AAATGCTATTTTGTTTAATA+GGG | - | chr5.3:1781359-1781378 | None:intergenic | 15.0% |
| !!! | AATGCTATTTTTTTTAATAG+GGG | + | chr5.3:1781533-1781552 | MS.gene40479:intron | 15.0% |
| !!! | ATTAAACAAAATAGCATTTT+TGG | + | chr5.3:1781360-1781379 | MS.gene40479:intron | 15.0% |
| !!! | ATTGAAATTGAAAGTATAAT+AGG | - | chr5.3:1780917-1780936 | None:intergenic | 15.0% |
| !!! | ATTTTTCAAGTATTACTTTT+AGG | + | chr5.3:1781648-1781667 | MS.gene40479:intron | 15.0% |
| !!! | CTAATGCTATTTTTTTTAAT+AGG | + | chr5.3:1781531-1781550 | MS.gene40479:intron | 15.0% |
| !!! | TCTAGTATGTATTTAATTTT+AGG | + | chr5.3:1781283-1781302 | MS.gene40479:intron | 15.0% |
| !!! | TCTAGTTTAATTACTATAAT+AGG | + | chr5.3:1782421-1782440 | MS.gene40479:intron | 15.0% |
| !! | AAAGAATACCATATTTATTG+AGG | - | chr5.3:1782736-1782755 | None:intergenic | 20.0% |
| !! | AAGAATACCATATTTATTGA+GGG | - | chr5.3:1782735-1782754 | None:intergenic | 20.0% |
| !! | AAGTAACATTAATGTTTCAT+TGG | - | chr5.3:1781788-1781807 | None:intergenic | 20.0% |
| !! | AGAGATAAAAATTGTTACAA+AGG | + | chr5.3:1782341-1782360 | MS.gene40479:intron | 20.0% |
| !! | CTTTCACATATCATTTATTA+AGG | + | chr5.3:1781865-1781884 | MS.gene40479:intron | 20.0% |
| !! | GAAATGTAATTAATATTGTG+TGG | - | chr5.3:1781925-1781944 | None:intergenic | 20.0% |
| !! | TTAAAGTCATTGACAATATT+AGG | - | chr5.3:1782217-1782236 | None:intergenic | 20.0% |
| !! | TTGCTCATTTGATAAAATTA+AGG | - | chr5.3:1781608-1781627 | None:intergenic | 20.0% |
| !!! | AATGCTATTTTGTTTAATAG+GGG | - | chr5.3:1781358-1781377 | None:intergenic | 20.0% |
| !!! | ATGCTATTTTTTTTAATAGG+GGG | + | chr5.3:1781534-1781553 | MS.gene40479:intron | 20.0% |
| !!! | TGCAATTTTTCTAAAGATAA+GGG | + | chr5.3:1781440-1781459 | MS.gene40479:intron | 20.0% |
| !!! | TTATCACCTTTTGAAAAATT+TGG | + | chr5.3:1782659-1782678 | MS.gene40479:intron | 20.0% |
| !!! | TTGCAATTTTTCTAAAGATA+AGG | + | chr5.3:1781439-1781458 | MS.gene40479:intron | 20.0% |
| ! | ACTTGTATTGTGAAAATTGT+AGG | + | chr5.3:1782458-1782477 | MS.gene40479:intron | 25.0% |
| ! | CAATGCTATAACTGAAAATA+GGG | + | chr5.3:1782889-1782908 | MS.gene40479:CDS | 25.0% |
| ! | CATATTTCCTTTATGTTAGA+GGG | + | chr5.3:1781473-1781492 | MS.gene40479:intron | 25.0% |
| ! | TATTCTTTATTGTCATATGG+TGG | + | chr5.3:1782748-1782767 | MS.gene40479:intron | 25.0% |
| ! | TCAATGCTATAACTGAAAAT+AGG | + | chr5.3:1782888-1782907 | MS.gene40479:CDS | 25.0% |
| ! | TCCTCTTAACAAGTATAATA+GGG | + | chr5.3:1782982-1783001 | MS.gene40479:CDS | 25.0% |
| ! | TGGTATTCTTTATTGTCATA+TGG | + | chr5.3:1782745-1782764 | MS.gene40479:intron | 25.0% |
| ! | TTTGAAAAATTTGGAGATTG+TGG | + | chr5.3:1782668-1782687 | MS.gene40479:intron | 25.0% |
| !! | AAATCTACAACGATTTTCAA+GGG | - | chr5.3:1782579-1782598 | None:intergenic | 25.0% |
| !!! | AAATCGTTGTAGATTTGTTT+TGG | + | chr5.3:1782583-1782602 | MS.gene40479:CDS | 25.0% |
| !!! | ATGCTATTTTGTTTAATAGG+GGG | - | chr5.3:1781357-1781376 | None:intergenic | 25.0% |
| !!! | CAATCTCCAAATTTTTCAAA+AGG | - | chr5.3:1782668-1782687 | None:intergenic | 25.0% |
| !!! | GCAATTTTTCTAAAGATAAG+GGG | + | chr5.3:1781441-1781460 | MS.gene40479:intron | 25.0% |
| !!! | TGAAAATTGTAGGTTTTGAT+GGG | + | chr5.3:1782468-1782487 | MS.gene40479:intron | 25.0% |
| !!! | TTCAAGTATTACTTTTAGGT+GGG | + | chr5.3:1781652-1781671 | MS.gene40479:intron | 25.0% |
| !!! | TTTCAAGTATTACTTTTAGG+TGG | + | chr5.3:1781651-1781670 | MS.gene40479:intron | 25.0% |
| AAAGTGACAGGTGTATAATT+TGG | - | chr5.3:1781759-1781778 | None:intergenic | 30.0% | |
| AACTGAATGTCATTATAGCT+TGG | + | chr5.3:1782799-1782818 | MS.gene40479:intron | 30.0% | |
| AAGTGACAGGTGTATAATTT+GGG | - | chr5.3:1781758-1781777 | None:intergenic | 30.0% | |
| AGCATATTTCCCTAAACATA+GGG | + | chr5.3:1781503-1781522 | MS.gene40479:intron | 30.0% | |
| AGTTTGTCTGTTGAAGATAT+TGG | - | chr5.3:1782115-1782134 | None:intergenic | 30.0% | |
| ATACAGTTTGTCAACCAAAT+GGG | + | chr5.3:1782083-1782102 | MS.gene40479:intron | 30.0% | |
| ATATAAAGTCCCAATTCTTG+GGG | - | chr5.3:1782704-1782723 | None:intergenic | 30.0% | |
| ATCTTGTAAGGTGTAATAAG+AGG | - | chr5.3:1780867-1780886 | None:intergenic | 30.0% | |
| CATATAAAGTCCCAATTCTT+GGG | - | chr5.3:1782705-1782724 | None:intergenic | 30.0% | |
| CTCACTAGAATAAGATCATA+TGG | + | chr5.3:1781031-1781050 | MS.gene40479:CDS | 30.0% | |
| CTCCTCTTAACAAGTATAAT+AGG | + | chr5.3:1782981-1783000 | MS.gene40479:CDS | 30.0% | |
| CTTATTACACCTTACAAGAT+GGG | + | chr5.3:1780867-1780886 | MS.gene40479:CDS | 30.0% | |
| CTTTCATGAATTGTTCAAGT+AGG | - | chr5.3:1782520-1782539 | None:intergenic | 30.0% | |
| GCATATTTCCTTTATGTTAG+AGG | + | chr5.3:1781472-1781491 | MS.gene40479:intron | 30.0% | |
| GTTAATGCCCTCAATAAATA+TGG | + | chr5.3:1782725-1782744 | MS.gene40479:intron | 30.0% | |
| TAAGGTGTAATAAGAGGAAT+GGG | - | chr5.3:1780861-1780880 | None:intergenic | 30.0% | |
| TATGATCTTATTCTAGTGAG+TGG | - | chr5.3:1781031-1781050 | None:intergenic | 30.0% | |
| TCATCAACAATTTCCATTCA+TGG | - | chr5.3:1782776-1782795 | None:intergenic | 30.0% | |
| TCTTATTACACCTTACAAGA+TGG | + | chr5.3:1780866-1780885 | MS.gene40479:CDS | 30.0% | |
| TGACAAACTGTATGGAATAT+AGG | - | chr5.3:1782076-1782095 | None:intergenic | 30.0% | |
| ! | AATGGAACTTTTATGGTTAC+TGG | + | chr5.3:1782842-1782861 | MS.gene40479:intron | 30.0% |
| ! | CAAATCTACAACGATTTTCA+AGG | - | chr5.3:1782580-1782599 | None:intergenic | 30.0% |
| ! | GGTTTTCAATGGAACTTTTA+TGG | + | chr5.3:1782835-1782854 | MS.gene40479:intron | 30.0% |
| ! | TCCCTATTATACTTGTTAAG+AGG | - | chr5.3:1782986-1783005 | None:intergenic | 30.0% |
| !! | GAAAATTGTAGGTTTTGATG+GGG | + | chr5.3:1782469-1782488 | MS.gene40479:intron | 30.0% |
| !! | GTGAAAATTGTAGGTTTTGA+TGG | + | chr5.3:1782467-1782486 | MS.gene40479:intron | 30.0% |
| AAACGTCATACAATTTGGGA+CGG | + | chr5.3:1781966-1781985 | MS.gene40479:intron | 35.0% | |
| AAACTACTCACACCACAAAT+TGG | + | chr5.3:1782130-1782149 | MS.gene40479:CDS | 35.0% | |
| AACGACAGAACAGATGAATA+TGG | + | chr5.3:1782548-1782567 | MS.gene40479:CDS | 35.0% | |
| CATACAGTTTGTCAACCAAA+TGG | + | chr5.3:1782082-1782101 | MS.gene40479:intron | 35.0% | |
| CATATTTCCCTAAACATAGG+GGG | + | chr5.3:1781505-1781524 | MS.gene40479:intron | 35.0% | |
| CATTGGTATTGTAAAGTGAC+AGG | - | chr5.3:1781771-1781790 | None:intergenic | 35.0% | |
| CATTTGGTTGACAAACTGTA+TGG | - | chr5.3:1782084-1782103 | None:intergenic | 35.0% | |
| CCAAGAATTGGGACTTTATA+TGG | + | chr5.3:1782703-1782722 | MS.gene40479:intron | 35.0% | |
| CCATATAAAGTCCCAATTCT+TGG | - | chr5.3:1782706-1782725 | None:intergenic | 35.0% | |
| CCATTGAAAACCTTTCTCAT+TGG | - | chr5.3:1782827-1782846 | None:intergenic | 35.0% | |
| CCCAAAACGTCATACAATTT+GGG | + | chr5.3:1781962-1781981 | MS.gene40479:intron | 35.0% | |
| CTACATTCTTCTGTCAGATT+TGG | + | chr5.3:1781239-1781258 | MS.gene40479:intron | 35.0% | |
| GAAGCTATTGCAAATGAGAT+AGG | + | chr5.3:1782614-1782633 | MS.gene40479:CDS | 35.0% | |
| GAGCATATTTCCCTAAACAT+AGG | + | chr5.3:1781502-1781521 | MS.gene40479:intron | 35.0% | |
| GAGGTTTAATTAGCAAGACA+AGG | - | chr5.3:1780985-1781004 | None:intergenic | 35.0% | |
| GCAAATCTCTTTGGTAAATC+TGG | - | chr5.3:1782953-1782972 | None:intergenic | 35.0% | |
| GCAAATTCAATCTCTCTCAT+AGG | + | chr5.3:1780889-1780908 | MS.gene40479:CDS | 35.0% | |
| GCATATTTCCCTAAACATAG+GGG | + | chr5.3:1781504-1781523 | MS.gene40479:intron | 35.0% | |
| GCATTAAGTGCAAATCTCTT+TGG | - | chr5.3:1782962-1782981 | None:intergenic | 35.0% | |
| GTAAGGTGTAATAAGAGGAA+TGG | - | chr5.3:1780862-1780881 | None:intergenic | 35.0% | |
| GTCCAAAAATTACTGAGAAG+AGG | + | chr5.3:1781391-1781410 | MS.gene40479:intron | 35.0% | |
| TACACTTCTGATCCAATTCT+TGG | + | chr5.3:1783013-1783032 | MS.gene40479:CDS | 35.0% | |
| TAGTCGGTATAACCAAGAAT+TGG | - | chr5.3:1783028-1783047 | None:intergenic | 35.0% | |
| TCATTCAAGAAAAGGGTAGT+CGG | - | chr5.3:1783044-1783063 | None:intergenic | 35.0% | |
| TTGAATTTGCCCATCTTGTA+AGG | - | chr5.3:1780879-1780898 | None:intergenic | 35.0% | |
| ! | AAAACAACTCTGAAAATGGG+AGG | - | chr5.3:1781004-1781023 | None:intergenic | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | + | chr5.3:1781562-1781581 | MS.gene40479:intron | 35.0% |
| ! | ATCGCAACTTTTGCAAACTT+AGG | - | chr5.3:1781581-1781562 | None:intergenic | 35.0% |
| ! | ATTGCAATTATGCCCCTTTT+TGG | - | chr5.3:1781426-1781445 | None:intergenic | 35.0% |
| ! | CCAATGAGAAAGGTTTTCAA+TGG | + | chr5.3:1782824-1782843 | MS.gene40479:intron | 35.0% |
| ! | CCCAAATTGTATGACGTTTT+GGG | - | chr5.3:1781965-1781984 | None:intergenic | 35.0% |
| ! | CTTTTGACCCTCTAACATAA+AGG | - | chr5.3:1781483-1781502 | None:intergenic | 35.0% |
| ! | GCCAAAACAACTCTGAAAAT+GGG | - | chr5.3:1781007-1781026 | None:intergenic | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | + | chr5.3:1781331-1781350 | MS.gene40479:intron | 35.0% |
| ! | GTTTGCAAAAGTTGCGATTT+TGG | - | chr5.3:1781350-1781331 | None:intergenic | 35.0% |
| ! | TCCCAAATTGTATGACGTTT+TGG | - | chr5.3:1781966-1781985 | None:intergenic | 35.0% |
| ! | TCCCATTTTCAGAGTTGTTT+TGG | + | chr5.3:1781003-1781022 | MS.gene40479:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACTTA+GGG | + | chr5.3:1781563-1781582 | MS.gene40479:intron | 35.0% |
| ! | TCGCAACTTTTGCAAACTTA+GGG | - | chr5.3:1781582-1781563 | None:intergenic | 35.0% |
| ! | TGCCAAAACAACTCTGAAAA+TGG | - | chr5.3:1781008-1781027 | None:intergenic | 35.0% |
| ! | TTGCAATTATGCCCCTTTTT+GGG | - | chr5.3:1781425-1781444 | None:intergenic | 35.0% |
| !! | CTCAGTAATTTTTGGACGAA+GGG | - | chr5.3:1781388-1781407 | None:intergenic | 35.0% |
| !! | TCAGTAATTTTTGGACGAAG+GGG | - | chr5.3:1781387-1781406 | None:intergenic | 35.0% |
| !! | TCTCAGTAATTTTTGGACGA+AGG | - | chr5.3:1781389-1781408 | None:intergenic | 35.0% |
| AAACTTAGGGGGCAAAAAGT+GGG | + | chr5.3:1781576-1781595 | MS.gene40479:intron | 40.0% | |
| AAACTTAGGGGGCAAAAAGT+GGG | - | chr5.3:1781595-1781576 | None:intergenic | 40.0% | |
| AAGCGACATACAATTTGGGA+AGG | - | chr5.3:1781720-1781739 | None:intergenic | 40.0% | |
| ACAGAAGAATGTAGCACCTT+TGG | - | chr5.3:1781233-1781252 | None:intergenic | 40.0% | |
| AGACTCAAATCCCCAAGAAT+TGG | + | chr5.3:1782691-1782710 | MS.gene40479:intron | 40.0% | |
| AGGGCAGATCTTATTGCTTA+TGG | + | chr5.3:1782908-1782927 | MS.gene40479:CDS | 40.0% | |
| ATTAGTGACCCCCTATGTTT+AGG | - | chr5.3:1781516-1781535 | None:intergenic | 40.0% | |
| CCCAAAGCGACATACAATTT+GGG | - | chr5.3:1781724-1781743 | None:intergenic | 40.0% | |
| CTCTTTAGTCCATATACCTG+GGG | - | chr5.3:1781170-1781189 | None:intergenic | 40.0% | |
| GACAGAACAGATGAATATGG+TGG | + | chr5.3:1782551-1782570 | MS.gene40479:CDS | 40.0% | |
| GACATACAATTTGGGAAGGA+TGG | - | chr5.3:1781716-1781735 | None:intergenic | 40.0% | |
| GACTCAAATCCCCAAGAATT+GGG | + | chr5.3:1782692-1782711 | MS.gene40479:intron | 40.0% | |
| GATAAGAAGACCACCTTTAG+AGG | - | chr5.3:1781101-1781120 | None:intergenic | 40.0% | |
| GCAAGAAATGCTATTGAAGC+TGG | + | chr5.3:1782244-1782263 | MS.gene40479:CDS | 40.0% | |
| GCATGAACAGCATCTACAAT+GGG | - | chr5.3:1781211-1781230 | None:intergenic | 40.0% | |
| GCCCAAAACGTCATACAATT+TGG | + | chr5.3:1781961-1781980 | MS.gene40479:intron | 40.0% | |
| GCTCTTTAGTCCATATACCT+GGG | - | chr5.3:1781171-1781190 | None:intergenic | 40.0% | |
| GGAGGCTATGAAAAACAAGA+TGG | + | chr5.3:1782863-1782882 | MS.gene40479:intron | 40.0% | |
| TCCCAAAGCGACATACAATT+TGG | - | chr5.3:1781725-1781744 | None:intergenic | 40.0% | |
| TGCTCTTTAGTCCATATACC+TGG | - | chr5.3:1781172-1781191 | None:intergenic | 40.0% | |
| TTAGTGACCCCCTATGTTTA+GGG | - | chr5.3:1781515-1781534 | None:intergenic | 40.0% | |
| TTCTGTCAGATTTGGCATGT+TGG | + | chr5.3:1781247-1781266 | MS.gene40479:intron | 40.0% | |
| TTTGATGGGGTTGAAATCCA+TGG | + | chr5.3:1782482-1782501 | MS.gene40479:CDS | 40.0% | |
| ! | ATGGACTAAAGAGCAAGTTG+AGG | + | chr5.3:1781177-1781196 | MS.gene40479:intron | 40.0% |
| ! | CGCAACTTTTGCAAACTTAG+GGG | + | chr5.3:1781564-1781583 | MS.gene40479:intron | 40.0% |
| ! | CGCAACTTTTGCAAACTTAG+GGG | - | chr5.3:1781583-1781564 | None:intergenic | 40.0% |
| ! | GCAACTTTTGCAAACTTAGG+GGG | + | chr5.3:1781565-1781584 | MS.gene40479:intron | 40.0% |
| ! | GCAACTTTTGCAAACTTAGG+GGG | - | chr5.3:1781584-1781565 | None:intergenic | 40.0% |
| ! | GGAACTTTTATGGTTACTGG+AGG | + | chr5.3:1782845-1782864 | MS.gene40479:intron | 40.0% |
| ! | GGCCTCTTCTCAGTAATTTT+TGG | - | chr5.3:1781396-1781415 | None:intergenic | 40.0% |
| ! | TCCCAAATTGTATGTCGCTT+TGG | + | chr5.3:1781720-1781739 | MS.gene40479:intron | 40.0% |
| !! | CAGTAATTTTTGGACGAAGG+GGG | - | chr5.3:1781386-1781405 | None:intergenic | 40.0% |
| !! | CCCAAATTGTATGTCGCTTT+GGG | + | chr5.3:1781721-1781740 | MS.gene40479:intron | 40.0% |
| ACACCACAAATTGGAGGTGA+TGG | + | chr5.3:1782139-1782158 | MS.gene40479:CDS | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | + | chr5.3:1781575-1781594 | MS.gene40479:intron | 45.0% | |
| CAAACTTAGGGGGCAAAAAG+TGG | - | chr5.3:1781594-1781575 | None:intergenic | 45.0% | |
| CCATCCTCTATTACTCTCAG+AGG | + | chr5.3:1781074-1781093 | MS.gene40479:CDS | 45.0% | |
| CTACTCACACCACAAATTGG+AGG | + | chr5.3:1782133-1782152 | MS.gene40479:CDS | 45.0% | |
| CTTCTTATCGCTGAAGCTAC+CGG | + | chr5.3:1781112-1781131 | MS.gene40479:CDS | 45.0% | |
| GAGATAGGTGCAGAAAGAGT+TGG | + | chr5.3:1782629-1782648 | MS.gene40479:intron | 45.0% | |
| GAGTAATAGAGGATGGCATG+AGG | - | chr5.3:1781070-1781089 | None:intergenic | 45.0% | |
| GGCATGAACAGCATCTACAA+TGG | - | chr5.3:1781212-1781231 | None:intergenic | 45.0% | |
| GTACCATCACCTCCAATTTG+TGG | - | chr5.3:1782145-1782164 | None:intergenic | 45.0% | |
| GTAGATGCTGTTCATGCCAA+AGG | + | chr5.3:1781214-1781233 | MS.gene40479:intron | 45.0% | |
| GTTGAAATCCATGGAGCTCA+TGG | + | chr5.3:1782491-1782510 | MS.gene40479:CDS | 45.0% | |
| TACTCTCAGAGGTCCTCTAA+AGG | + | chr5.3:1781085-1781104 | MS.gene40479:CDS | 45.0% | |
| TAGCTTGGCACCAATGAGAA+AGG | + | chr5.3:1782814-1782833 | MS.gene40479:intron | 45.0% | |
| TCTTCTGTTCTTAGCCTCCT+TGG | - | chr5.3:1782190-1782209 | None:intergenic | 45.0% | |
| TTGAGCGGTATCAGATACAC+CGG | - | chr5.3:1781134-1781153 | None:intergenic | 45.0% | |
| ! | AGGACCTCTGAGAGTAATAG+AGG | - | chr5.3:1781081-1781100 | None:intergenic | 45.0% |
| ! | CCTCTGAGAGTAATAGAGGA+TGG | - | chr5.3:1781077-1781096 | None:intergenic | 45.0% |
| ! | CTAAAGAGCAAGTTGAGGCA+TGG | + | chr5.3:1781182-1781201 | MS.gene40479:intron | 45.0% |
| ! | GATATTGGTGCTTGCCCATT+TGG | - | chr5.3:1782100-1782119 | None:intergenic | 45.0% |
| ! | GTCATACAATTTGGGACGGA+GGG | + | chr5.3:1781970-1781989 | MS.gene40479:intron | 45.0% |
| ! | TCATATGGTGGAGCCATGAA+TGG | + | chr5.3:1782760-1782779 | MS.gene40479:intron | 45.0% |
| ATCCAGACACCCCAGGTATA+TGG | + | chr5.3:1781158-1781177 | MS.gene40479:intron | 50.0% | |
| CACAATTCACACCACCAAGG+AGG | + | chr5.3:1782173-1782192 | MS.gene40479:CDS | 50.0% | |
| GGTGTATCTGATACCGCTCA+AGG | + | chr5.3:1781133-1781152 | MS.gene40479:CDS | 50.0% | |
| GGTGTCTGGATATCCTTGAG+CGG | - | chr5.3:1781149-1781168 | None:intergenic | 50.0% | |
| TAGAGGATGGCATGAGGTTG+TGG | - | chr5.3:1781064-1781083 | None:intergenic | 50.0% | |
| TCTGTTCTTAGCCTCCTTGG+TGG | - | chr5.3:1782187-1782206 | None:intergenic | 50.0% | |
| TGCCACAATTCACACCACCA+AGG | + | chr5.3:1782170-1782189 | MS.gene40479:CDS | 50.0% | |
| ! | CGTCATACAATTTGGGACGG+AGG | + | chr5.3:1781969-1781988 | MS.gene40479:intron | 50.0% |
| ! | TCTCAGAGGTCCTCTAAAGG+TGG | + | chr5.3:1781088-1781107 | MS.gene40479:CDS | 50.0% |
| !! | CTCCTTGGTGGTGTGAATTG+TGG | - | chr5.3:1782175-1782194 | None:intergenic | 50.0% |
| AGAGGCCACGTGTCCCAAAA+AGG | + | chr5.3:1781409-1781428 | MS.gene40479:intron | 55.0% | |
| AGGCCACGTGTCCCAAAAAG+GGG | + | chr5.3:1781411-1781430 | MS.gene40479:intron | 55.0% | |
| CAAGGATATCCAGACACCCC+AGG | + | chr5.3:1781151-1781170 | MS.gene40479:CDS | 55.0% | |
| GAGGCCACGTGTCCCAAAAA+GGG | + | chr5.3:1781410-1781429 | MS.gene40479:intron | 55.0% | |
| GTAGGTAGCCATGAGCTCCA+TGG | - | chr5.3:1782502-1782521 | None:intergenic | 55.0% | |
| ! | GTCCATATACCTGGGGTGTC+TGG | - | chr5.3:1781163-1781182 | None:intergenic | 55.0% |
| !!! | ATGCCCCTTTTTGGGACACG+TGG | - | chr5.3:1781417-1781436 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1780834 | 1783063 | 1780834 | ID=MS.gene40479 |
| chr5.3 | mRNA | 1780834 | 1783063 | 1780834 | ID=MS.gene40479.t1;Parent=MS.gene40479 |
| chr5.3 | exon | 1780834 | 1780910 | 1780834 | ID=MS.gene40479.t1.exon1;Parent=MS.gene40479.t1 |
| chr5.3 | CDS | 1780834 | 1780910 | 1780834 | ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1 |
| chr5.3 | exon | 1781015 | 1781172 | 1781015 | ID=MS.gene40479.t1.exon2;Parent=MS.gene40479.t1 |
| chr5.3 | CDS | 1781015 | 1781172 | 1781015 | ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1 |
| chr5.3 | exon | 1782089 | 1782265 | 1782089 | ID=MS.gene40479.t1.exon3;Parent=MS.gene40479.t1 |
| chr5.3 | CDS | 1782089 | 1782265 | 1782089 | ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1 |
| chr5.3 | exon | 1782480 | 1782635 | 1782480 | ID=MS.gene40479.t1.exon4;Parent=MS.gene40479.t1 |
| chr5.3 | CDS | 1782480 | 1782635 | 1782480 | ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1 |
| chr5.3 | exon | 1782867 | 1783063 | 1782867 | ID=MS.gene40479.t1.exon5;Parent=MS.gene40479.t1 |
| chr5.3 | CDS | 1782867 | 1783063 | 1782867 | ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1 |
| Gene Sequence |
| Protein sequence |
