AlfalfaGEDB | MS.gene40479

M. sativa cultivar XinJiangDaYe / MS.gene40479

KEGG: K05894
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0010181 GO:0016491 GO:0032553 GO:0036094 GO:0043167 GO:0043168 GO:0048037 GO:0050662 GO:0055114 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00724.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40479.t1	AES93721.1	66.8	346	17	2	7	254	3	348	8.10E-120	439.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40479.t1	Q8GYB8	49.9	369	70	3	1	254	3	371	2.5e-93	343.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40479.t1	G7K3R8	66.8	346	17	2	7	254	3	348	5.8e-120	439.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene40479	0.825379	4.84E-54	-1.69E-46
MS.gene049171	MS.gene40479	0.841607	4.29E-58	-1.69E-46
MS.gene049173	MS.gene40479	0.802194	6.30E-49	-1.69E-46
MS.gene049217	MS.gene40479	0.861556	9.44E-64	-1.69E-46
MS.gene049222	MS.gene40479	0.883504	4.24E-71	-1.69E-46
MS.gene049232	MS.gene40479	0.83161	1.51E-55	-1.69E-46
MS.gene049285	MS.gene40479	0.864515	1.15E-64	-1.69E-46
MS.gene049320	MS.gene40479	0.862439	5.07E-64	-1.69E-46
MS.gene049369	MS.gene40479	0.829956	3.85E-55	-1.69E-46
MS.gene049396	MS.gene40479	0.820808	5.64E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40479.t1	MTR_5g006720	60.345	348	39	3	6	254	5	352	1.92e-138	393
MS.gene40479.t1	MTR_5g006740	73.790	248	37	3	7	233	3	243	1.69e-123	355
MS.gene40479.t1	MTR_5g006740	71.591	88	20	1	172	254	261	348	4.46e-36	131
MS.gene40479.t1	MTR_5g006740	68.679	265	38	3	7	233	3	260	9.54e-121	348
MS.gene40479.t1	MTR_5g006740	71.591	88	20	1	172	254	278	365	4.85e-36	131
MS.gene40479.t1	MTR_5g006800	63.469	271	54	3	1	233	1	264	9.96e-110	321
MS.gene40479.t1	MTR_5g006800	83.077	65	11	0	190	254	305	369	2.78e-33	124
MS.gene40479.t1	MTR_5g006780	62.637	273	55	4	1	233	1	266	1.09e-107	316
MS.gene40479.t1	MTR_5g006780	83.077	65	11	0	190	254	307	371	3.40e-33	124
MS.gene40479.t1	MTR_5g006670	62.406	266	49	6	7	234	3	255	1.19e-103	305

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40479.t1	AT1G76690	61.842	228	49	2	1	190	3	230	3.94e-94	281
MS.gene40479.t1	AT1G76690	67.692	65	21	0	190	254	307	371	4.47e-26	105
MS.gene40479.t1	AT1G76680	61.404	228	50	2	1	190	1	228	5.40e-92	276
MS.gene40479.t1	AT1G76680	66.154	65	22	0	190	254	305	369	4.53e-26	105
MS.gene40479.t1	AT1G76680	55.336	253	50	3	1	190	1	253	2.49e-86	262
MS.gene40479.t1	AT1G76680	66.154	65	22	0	190	254	330	394	5.92e-26	105
MS.gene40479.t1	AT1G17990	51.292	271	82	7	5	237	2	260	8.48e-86	256
MS.gene40479.t1	AT1G18020	51.292	271	82	7	5	237	2	260	8.48e-86	256
MS.gene40479.t1	AT1G17990	48.339	271	82	8	5	237	2	252	4.06e-77	234
MS.gene40479.t1	AT1G09400	54.028	211	53	2	18	190	1	205	1.32e-76	235

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Find 59 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTACTCACACCACAAAT+TGG	0.358876	5.3:+1782130	MS.gene40479:CDS
AAATCGTTGTAGATTTGTTT+TGG	0.271540	5.3:+1782583	MS.gene40479:CDS
AACGACAGAACAGATGAATA+TGG	0.465016	5.3:+1782548	MS.gene40479:CDS
ACACCACAAATTGGAGGTGA+TGG	0.561195	5.3:+1782139	MS.gene40479:CDS
AGGACCTCTGAGAGTAATAG+AGG	0.468360	5.3:-1781078	None:intergenic
AGGGCAGATCTTATTGCTTA+TGG	0.315216	5.3:+1782908	MS.gene40479:CDS
AGTTTGTCTGTTGAAGATAT+TGG	0.380484	5.3:-1782112	None:intergenic
ATACAGTTTGTCAACCAAAT+GGG	0.523723	5.3:+1782083	MS.gene40479:intron
ATCTTGTAAGGTGTAATAAG+AGG	0.519989	5.3:-1780864	None:intergenic
CAAGGATATCCAGACACCCC+AGG	0.595672	5.3:+1781151	MS.gene40479:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGACAGGTGTATAATT+TGG	-	chr5.3:1781759-1781778	None:intergenic	30.0%
AACTGAATGTCATTATAGCT+TGG	+	chr5.3:1782799-1782818	MS.gene40479:intron	30.0%
AAGTGACAGGTGTATAATTT+GGG	-	chr5.3:1781758-1781777	None:intergenic	30.0%
AGCATATTTCCCTAAACATA+GGG	+	chr5.3:1781503-1781522	MS.gene40479:intron	30.0%
AGTTTGTCTGTTGAAGATAT+TGG	-	chr5.3:1782115-1782134	None:intergenic	30.0%
ATACAGTTTGTCAACCAAAT+GGG	+	chr5.3:1782083-1782102	MS.gene40479:intron	30.0%
ATATAAAGTCCCAATTCTTG+GGG	-	chr5.3:1782704-1782723	None:intergenic	30.0%
ATCTTGTAAGGTGTAATAAG+AGG	-	chr5.3:1780867-1780886	None:intergenic	30.0%
CATATAAAGTCCCAATTCTT+GGG	-	chr5.3:1782705-1782724	None:intergenic	30.0%
CTCACTAGAATAAGATCATA+TGG	+	chr5.3:1781031-1781050	MS.gene40479:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.3	gene	1780834	1783063	1780834	ID=MS.gene40479
chr5.3	mRNA	1780834	1783063	1780834	ID=MS.gene40479.t1;Parent=MS.gene40479
chr5.3	exon	1780834	1780910	1780834	ID=MS.gene40479.t1.exon1;Parent=MS.gene40479.t1
chr5.3	CDS	1780834	1780910	1780834	ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1
chr5.3	exon	1781015	1781172	1781015	ID=MS.gene40479.t1.exon2;Parent=MS.gene40479.t1
chr5.3	CDS	1781015	1781172	1781015	ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1
chr5.3	exon	1782089	1782265	1782089	ID=MS.gene40479.t1.exon3;Parent=MS.gene40479.t1
chr5.3	CDS	1782089	1782265	1782089	ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1
chr5.3	exon	1782480	1782635	1782480	ID=MS.gene40479.t1.exon4;Parent=MS.gene40479.t1
chr5.3	CDS	1782480	1782635	1782480	ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1
chr5.3	exon	1782867	1783063	1782867	ID=MS.gene40479.t1.exon5;Parent=MS.gene40479.t1
chr5.3	CDS	1782867	1783063	1782867	ID=cds.MS.gene40479.t1;Parent=MS.gene40479.t1

Gene Sequence

>MS.gene40479

ATGGAAGCTGCTAAAACTGCTGATCCCATTCCTCTTATTACACCTTACAAGATGGGCAAATTCAATCTCTCTCATAGGTACCTATTATACTTTCAATTTCAATGTTATGTTTATTTCACTTTCAATTCAATTTCAATATCAATGCTTACCTTGTCTTGCTAATTAAACCTCCCATTTTCAGAGTTGTTTTGGCACCACTCACTAGAATAAGATCATATGGCAACGTTCCACAACCTCATGCCATCCTCTATTACTCTCAGAGGTCCTCTAAAGGTGGTCTTCTTATCGCTGAAGCTACCGGTGTATCTGATACCGCTCAAGGATATCCAGACACCCCAGGTATATGGACTAAAGAGCAAGTTGAGGCATGGAAACCCATTGTAGATGCTGTTCATGCCAAAGGTGCTACATTCTTCTGTCAGATTTGGCATGTTGGAAGAGTTTCTAATTCTAGTATGTATTTAATTTTAGGCTAAAACCCACTTTTTGCCCCCTAAGTTTGCAAAAGTTGCGATTTTGGCCCCCTATTAAACAAAATAGCATTTTTGGCCCCCTTCGTCCAAAAATTACTGAGAAGAGGCCACGTGTCCCAAAAAGGGGCATAATTGCAATTTTTCTAAAGATAAGGGGTCTAAAAAGCATATTTCCTTTATGTTAGAGGGTCAAAAGAGCATATTTCCCTAAACATAGGGGGTCACTAATGCTATTTTTTTTAATAGGGGGCCAAAATCGCAACTTTTGCAAACTTAGGGGGCAAAAAGTGGGTTTTAGCCTTAATTTTATCAAATGAGCAATTAATTGACATATTTTTCTAATTTTTCAAGTATTACTTTTAGGTGGGAAAGAAATTTTTGTTAGAGATGATACTTATTTTATACTCCATCCTTCCCAAATTGTATGTCGCTTTGGGAAAAAAATTGTCCCAAATTATACACCTGTCACTTTACAATACCAATGAAACATTAATGTTACTTTTTCTATTATATCCTTAACTATTTATTACTTTCTTTTCTTTCAATTCTTTCATTTATCTTTCACATATCATTTATTAAGGACAATTTTGTAAAACAACTCATAATTTTTCTTTCCCACACAATATTAATTACATTTCTTAATACGTGTGAAATGCCCAAAACGTCATACAATTTGGGACGGAGGGAGTATTCATTAGTTTAATTAATTACATGTATTGTATATATTTATTAAACACATTTATATACACACTCAATATATTATATGCCTATATTCCATACAGTTTGTCAACCAAATGGGCAAGCACCAATATCTTCAACAGACAAACTACTCACACCACAAATTGGAGGTGATGGTACTGAAATGCCACAATTCACACCACCAAGGAGGCTAAGAACAGAAGAAATTCCTAATATTGTCAATGACTTTAAACTTGCTGCAAGAAATGCTATTGAAGCTGGTAAATTCATTTATCTTAAATTTCTCCATAATTCAATTGATTCAATTTAAGAACAGAAATAACGACGTAAATTAGAGAGATAAAAATTGTTACAAAGGTATGACATCTGTAACTCTTAACAAAAACAATAAGAGACAAACTTCATATTTTTACTCTCTAGTTTAATTACTATAATAGGAAGACATTTTACATACTTGTATTGTGAAAATTGTAGGTTTTGATGGGGTTGAAATCCATGGAGCTCATGGCTACCTACTTGAACAATTCATGAAAGATAAAGCGAACGACAGAACAGATGAATATGGTGGAACCCTTGAAAATCGTTGTAGATTTGTTTTGGAAATTGTTGAAGCTATTGCAAATGAGATAGGTGCAGAAAGAGTTGGAATAAAATTATCACCTTTTGAAAAATTTGGAGATTGTGGAGACTCAAATCCCCAAGAATTGGGACTTTATATGGTTAATGCCCTCAATAAATATGGTATTCTTTATTGTCATATGGTGGAGCCATGAATGGAAATTGTTGATGAAAAAACTGAATGTCATTATAGCTTGGCACCAATGAGAAAGGTTTTCAATGGAACTTTTATGGTTACTGGAGGCTATGAAAAACAAGATGGAATCAATGCTATAACTGAAAATAGGGCAGATCTTATTGCTTATGGTCGTTTGTTCATATCAAATCCAGATTTACCAAAGAGATTTGCACTTAATGCTCCTCTTAACAAGTATAATAGGGAGACATTCTACACTTCTGATCCAATTCTTGGTTATACCGACTACCCTTTTCTTGAATGA

Protein sequence

>MS.gene40479.t1

MEAAKTADPIPLITPYKMGKFNLSHRVVLAPLTRIRSYGNVPQPHAILYYSQRSSKGGLLIAEATGVSDTAQGYPDTPVCQPNGQAPISSTDKLLTPQIGGDGTEMPQFTPPRRLRTEEIPNIVNDFKLAARNAIEAGFDGVEIHGAHGYLLEQFMKDKANDRTDEYGGTLENRCRFVLEIVEAIANEIGYEKQDGINAITENRADLIAYGRLFISNPDLPKRFALNAPLNKYNRETFYTSDPILGYTDYPFLE