Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49874.t1 | XP_024638801.1 | 96.3 | 107 | 4 | 0 | 1 | 107 | 163 | 269 | 1.60E-56 | 228.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49874.t1 | Q9SRM5 | 57.4 | 94 | 40 | 0 | 1 | 94 | 163 | 256 | 4.1e-29 | 128.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49874.t1 | G7JP31 | 96.3 | 107 | 4 | 0 | 1 | 107 | 163 | 269 | 4.4e-56 | 226.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene49874 | 0.823873 | 1.10E-53 | -1.69E-46 |
| MS.gene049171 | MS.gene49874 | 0.891796 | 2.86E-74 | -1.69E-46 |
| MS.gene049217 | MS.gene49874 | 0.853639 | 2.09E-61 | -1.69E-46 |
| MS.gene049222 | MS.gene49874 | 0.881579 | 2.14E-70 | -1.69E-46 |
| MS.gene049232 | MS.gene49874 | 0.855504 | 6.04E-62 | -1.69E-46 |
| MS.gene049285 | MS.gene49874 | 0.865982 | 3.98E-65 | -1.69E-46 |
| MS.gene049312 | MS.gene49874 | -0.812985 | 3.22E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene49874 | 0.863279 | 2.79E-64 | -1.69E-46 |
| MS.gene049396 | MS.gene49874 | 0.821991 | 3.01E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene49874 | 0.882301 | 1.17E-70 | -1.69E-46 |
| MS.gene049633 | MS.gene49874 | 0.881097 | 3.18E-70 | -1.69E-46 |
| MS.gene049805 | MS.gene49874 | 0.848074 | 7.73E-60 | -1.69E-46 |
| MS.gene049865 | MS.gene49874 | 0.805885 | 1.08E-49 | -1.69E-46 |
| MS.gene05010 | MS.gene49874 | 0.84308 | 1.75E-58 | -1.69E-46 |
| MS.gene050163 | MS.gene49874 | 0.818995 | 1.46E-52 | -1.69E-46 |
| MS.gene050165 | MS.gene49874 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene050170 | MS.gene49874 | 0.872032 | 4.34E-67 | -1.69E-46 |
| MS.gene050323 | MS.gene49874 | 0.857646 | 1.42E-62 | -1.69E-46 |
| MS.gene050325 | MS.gene49874 | -0.81543 | 9.28E-52 | -1.69E-46 |
| MS.gene050327 | MS.gene49874 | -0.812656 | 3.80E-51 | -1.69E-46 |
| MS.gene050381 | MS.gene49874 | -0.806412 | 8.33E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene49874 | 0.84294 | 1.90E-58 | -1.69E-46 |
| MS.gene050502 | MS.gene49874 | 0.80105 | 1.08E-48 | -1.69E-46 |
| MS.gene050504 | MS.gene49874 | 0.869294 | 3.45E-66 | -1.69E-46 |
| MS.gene050518 | MS.gene49874 | 0.842158 | 3.07E-58 | -1.69E-46 |
| MS.gene050538 | MS.gene49874 | 0.83432 | 3.21E-56 | -1.69E-46 |
| MS.gene050577 | MS.gene49874 | 0.875954 | 2.05E-68 | -1.69E-46 |
| MS.gene050593 | MS.gene49874 | 0.864551 | 1.12E-64 | -1.69E-46 |
| MS.gene050612 | MS.gene49874 | 0.853278 | 2.66E-61 | -1.69E-46 |
| MS.gene050647 | MS.gene49874 | -0.803234 | 3.84E-49 | -1.69E-46 |
| MS.gene050662 | MS.gene49874 | 0.823355 | 1.45E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene49874 | 0.846512 | 2.07E-59 | -1.69E-46 |
| MS.gene050690 | MS.gene49874 | 0.822709 | 2.05E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene49874 | 0.868565 | 5.94E-66 | -1.69E-46 |
| MS.gene050747 | MS.gene49874 | 0.893144 | 8.26E-75 | -1.69E-46 |
| MS.gene050772 | MS.gene49874 | 0.874353 | 7.22E-68 | -1.69E-46 |
| MS.gene05080 | MS.gene49874 | 0.874231 | 7.94E-68 | -1.69E-46 |
| MS.gene05081 | MS.gene49874 | 0.845494 | 3.92E-59 | -1.69E-46 |
| MS.gene050868 | MS.gene49874 | 0.889678 | 1.95E-73 | -1.69E-46 |
| MS.gene050871 | MS.gene49874 | 0.890499 | 9.33E-74 | -1.69E-46 |
| MS.gene050904 | MS.gene49874 | 0.807904 | 4.02E-50 | -1.69E-46 |
| MS.gene050937 | MS.gene49874 | -0.801526 | 8.64E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene49874 | 0.895134 | 1.28E-75 | -1.69E-46 |
| MS.gene050986 | MS.gene49874 | 0.848499 | 5.89E-60 | -1.69E-46 |
| MS.gene05104 | MS.gene49874 | -0.803061 | 4.17E-49 | -1.69E-46 |
| MS.gene051167 | MS.gene49874 | -0.828104 | 1.08E-54 | -1.69E-46 |
| MS.gene051268 | MS.gene49874 | 0.819421 | 1.17E-52 | -1.69E-46 |
| MS.gene051317 | MS.gene49874 | 0.827482 | 1.53E-54 | -1.69E-46 |
| MS.gene051387 | MS.gene49874 | 0.820373 | 7.10E-53 | -1.69E-46 |
| MS.gene051439 | MS.gene49874 | -0.800032 | 1.74E-48 | -1.69E-46 |
| MS.gene051551 | MS.gene49874 | 0.846101 | 2.68E-59 | -1.69E-46 |
| MS.gene051666 | MS.gene49874 | 0.840999 | 6.20E-58 | -1.69E-46 |
| MS.gene051694 | MS.gene49874 | 0.824448 | 8.03E-54 | -1.69E-46 |
| MS.gene051734 | MS.gene49874 | 0.823417 | 1.40E-53 | -1.69E-46 |
| MS.gene051810 | MS.gene49874 | 0.815929 | 7.19E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene49874 | 0.894932 | 1.55E-75 | -1.69E-46 |
| MS.gene051858 | MS.gene49874 | 0.828386 | 9.26E-55 | -1.69E-46 |
| MS.gene051874 | MS.gene49874 | 0.813827 | 2.10E-51 | -1.69E-46 |
| MS.gene051946 | MS.gene49874 | -0.801298 | 9.62E-49 | -1.69E-46 |
| MS.gene052015 | MS.gene49874 | -0.815522 | 8.85E-52 | -1.69E-46 |
| MS.gene052164 | MS.gene49874 | 0.881001 | 3.45E-70 | -1.69E-46 |
| MS.gene052346 | MS.gene49874 | 0.824108 | 9.65E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene49874 | -0.800146 | 1.65E-48 | -1.69E-46 |
| MS.gene052481 | MS.gene49874 | 0.806674 | 7.34E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene49874 | 0.829329 | 5.47E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene49874 | 0.803435 | 3.49E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene49874 | 0.836242 | 1.05E-56 | -1.69E-46 |
| MS.gene052501 | MS.gene49874 | 0.868584 | 5.86E-66 | -1.69E-46 |
| MS.gene052503 | MS.gene49874 | 0.909162 | 7.73E-82 | -1.69E-46 |
| MS.gene052504 | MS.gene49874 | 0.82067 | 6.07E-53 | -1.69E-46 |
| MS.gene052505 | MS.gene49874 | 0.854372 | 1.29E-61 | -1.69E-46 |
| MS.gene052506 | MS.gene49874 | 0.887869 | 9.77E-73 | -1.69E-46 |
| MS.gene052615 | MS.gene49874 | 0.879324 | 1.37E-69 | -1.69E-46 |
| MS.gene052820 | MS.gene49874 | 0.827924 | 1.20E-54 | -1.69E-46 |
| MS.gene052822 | MS.gene49874 | 0.880205 | 6.65E-70 | -1.69E-46 |
| MS.gene052823 | MS.gene49874 | 0.907018 | 7.97E-81 | -1.69E-46 |
| MS.gene052825 | MS.gene49874 | 0.909888 | 3.46E-82 | -1.69E-46 |
| MS.gene052870 | MS.gene49874 | 0.805496 | 1.30E-49 | -1.69E-46 |
| MS.gene052872 | MS.gene49874 | 0.822756 | 2.00E-53 | -1.69E-46 |
| MS.gene052966 | MS.gene49874 | 0.857495 | 1.57E-62 | -1.69E-46 |
| MS.gene052982 | MS.gene49874 | 0.82053 | 6.53E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene49874 | 0.808873 | 2.50E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene49874 | 0.913961 | 3.35E-84 | -1.69E-46 |
| MS.gene053207 | MS.gene49874 | 0.85916 | 5.01E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene49874 | 0.876119 | 1.80E-68 | -1.69E-46 |
| MS.gene053286 | MS.gene49874 | 0.875551 | 2.82E-68 | -1.69E-46 |
| MS.gene053421 | MS.gene49874 | -0.822039 | 2.93E-53 | -1.69E-46 |
| MS.gene053436 | MS.gene49874 | 0.863315 | 2.72E-64 | -1.69E-46 |
| MS.gene053479 | MS.gene49874 | 0.851511 | 8.46E-61 | -1.69E-46 |
| MS.gene053480 | MS.gene49874 | 0.860447 | 2.05E-63 | -1.69E-46 |
| MS.gene053574 | MS.gene49874 | 0.896519 | 3.41E-76 | -1.69E-46 |
| MS.gene053626 | MS.gene49874 | 0.858673 | 7.01E-63 | -1.69E-46 |
| MS.gene053632 | MS.gene49874 | 0.855037 | 8.25E-62 | -1.69E-46 |
| MS.gene053633 | MS.gene49874 | 0.815693 | 8.11E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene49874 | 0.870943 | 9.95E-67 | -1.69E-46 |
| MS.gene053912 | MS.gene49874 | 0.808605 | 2.85E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene49874 | 0.80211 | 6.55E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene49874 | 0.890253 | 1.16E-73 | -1.69E-46 |
| MS.gene054408 | MS.gene49874 | 0.846208 | 2.51E-59 | -1.69E-46 |
| MS.gene054595 | MS.gene49874 | 0.866601 | 2.53E-65 | -1.69E-46 |
| MS.gene054600 | MS.gene49874 | 0.857249 | 1.86E-62 | -1.69E-46 |
| MS.gene054642 | MS.gene49874 | 0.865869 | 4.32E-65 | -1.69E-46 |
| MS.gene054706 | MS.gene49874 | -0.841291 | 5.19E-58 | -1.69E-46 |
| MS.gene05470 | MS.gene49874 | 0.881848 | 1.71E-70 | -1.69E-46 |
| MS.gene054742 | MS.gene49874 | -0.813691 | 2.25E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene49874 | -0.830455 | 2.91E-55 | -1.69E-46 |
| MS.gene054927 | MS.gene49874 | 0.871186 | 8.28E-67 | -1.69E-46 |
| MS.gene054954 | MS.gene49874 | 0.867892 | 9.79E-66 | -1.69E-46 |
| MS.gene05505 | MS.gene49874 | 0.806774 | 6.99E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene49874 | 0.862864 | 3.75E-64 | -1.69E-46 |
| MS.gene055224 | MS.gene49874 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene49874 | 0.86026 | 2.34E-63 | -1.69E-46 |
| MS.gene055362 | MS.gene49874 | 0.868897 | 4.64E-66 | -1.69E-46 |
| MS.gene055486 | MS.gene49874 | 0.806313 | 8.74E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene49874 | 0.886681 | 2.77E-72 | -1.69E-46 |
| MS.gene055577 | MS.gene49874 | 0.888003 | 8.68E-73 | -1.69E-46 |
| MS.gene055629 | MS.gene49874 | 0.839371 | 1.65E-57 | -1.69E-46 |
| MS.gene055722 | MS.gene49874 | 0.856031 | 4.24E-62 | -1.69E-46 |
| MS.gene055748 | MS.gene49874 | 0.820563 | 6.42E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene49874 | 0.811071 | 8.41E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene49874 | 0.809178 | 2.15E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene49874 | 0.878184 | 3.45E-69 | -1.69E-46 |
| MS.gene055941 | MS.gene49874 | 0.845594 | 3.68E-59 | -1.69E-46 |
| MS.gene056040 | MS.gene49874 | 0.842711 | 2.19E-58 | -1.69E-46 |
| MS.gene056046 | MS.gene49874 | 0.84421 | 8.70E-59 | -1.69E-46 |
| MS.gene056083 | MS.gene49874 | 0.83185 | 1.32E-55 | -1.69E-46 |
| MS.gene056166 | MS.gene49874 | 0.878931 | 1.88E-69 | -1.69E-46 |
| MS.gene056374 | MS.gene49874 | 0.837278 | 5.71E-57 | -1.69E-46 |
| MS.gene056387 | MS.gene49874 | 0.832084 | 1.16E-55 | -1.69E-46 |
| MS.gene056446 | MS.gene49874 | 0.82115 | 4.70E-53 | -1.69E-46 |
| MS.gene056448 | MS.gene49874 | 0.82424 | 8.99E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene49874 | 0.877088 | 8.31E-69 | -1.69E-46 |
| MS.gene056510 | MS.gene49874 | 0.88141 | 2.46E-70 | -1.69E-46 |
| MS.gene056511 | MS.gene49874 | 0.821141 | 4.73E-53 | -1.69E-46 |
| MS.gene056590 | MS.gene49874 | -0.803293 | 3.74E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene49874 | -0.804711 | 1.90E-49 | -1.69E-46 |
| MS.gene056610 | MS.gene49874 | 0.825292 | 5.08E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene49874 | 0.856811 | 2.50E-62 | -1.69E-46 |
| MS.gene05666 | MS.gene49874 | 0.820187 | 7.83E-53 | -1.69E-46 |
| MS.gene056692 | MS.gene49874 | 0.828864 | 7.09E-55 | -1.69E-46 |
| MS.gene056877 | MS.gene49874 | 0.822171 | 2.73E-53 | -1.69E-46 |
| MS.gene056898 | MS.gene49874 | 0.812148 | 4.90E-51 | -1.69E-46 |
| MS.gene056946 | MS.gene49874 | 0.836615 | 8.43E-57 | -1.69E-46 |
| MS.gene057014 | MS.gene49874 | -0.808467 | 3.05E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene49874 | 0.853252 | 2.70E-61 | -1.69E-46 |
| MS.gene057086 | MS.gene49874 | 0.841934 | 3.52E-58 | -1.69E-46 |
| MS.gene057146 | MS.gene49874 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene057261 | MS.gene49874 | -0.806498 | 7.99E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene49874 | 0.830493 | 2.85E-55 | -1.69E-46 |
| MS.gene057332 | MS.gene49874 | 0.803883 | 2.82E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene49874 | 0.862303 | 5.57E-64 | -1.69E-46 |
| MS.gene057658 | MS.gene49874 | 0.869625 | 2.69E-66 | -1.69E-46 |
| MS.gene057734 | MS.gene49874 | 0.847256 | 1.30E-59 | -1.69E-46 |
| MS.gene057831 | MS.gene49874 | 0.862065 | 6.60E-64 | -1.69E-46 |
| MS.gene057856 | MS.gene49874 | 0.860854 | 1.55E-63 | -1.69E-46 |
| MS.gene057857 | MS.gene49874 | 0.831099 | 2.02E-55 | -1.69E-46 |
| MS.gene05787 | MS.gene49874 | 0.8225 | 2.29E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene49874 | 0.841761 | 3.90E-58 | -1.69E-46 |
| MS.gene058157 | MS.gene49874 | 0.847549 | 1.08E-59 | -1.69E-46 |
| MS.gene058334 | MS.gene49874 | -0.827289 | 1.70E-54 | -1.69E-46 |
| MS.gene058338 | MS.gene49874 | 0.837831 | 4.12E-57 | -1.69E-46 |
| MS.gene05837 | MS.gene49874 | 0.870596 | 1.29E-66 | -1.69E-46 |
| MS.gene058419 | MS.gene49874 | 0.876437 | 1.40E-68 | -1.69E-46 |
| MS.gene058544 | MS.gene49874 | 0.903464 | 3.38E-79 | -1.69E-46 |
| MS.gene058723 | MS.gene49874 | 0.804078 | 2.57E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene49874 | 0.851734 | 7.32E-61 | -1.69E-46 |
| MS.gene058838 | MS.gene49874 | 0.869513 | 2.93E-66 | -1.69E-46 |
| MS.gene05883 | MS.gene49874 | 0.862952 | 3.52E-64 | -1.69E-46 |
| MS.gene059022 | MS.gene49874 | 0.863474 | 2.43E-64 | -1.69E-46 |
| MS.gene059023 | MS.gene49874 | 0.892543 | 1.44E-74 | -1.69E-46 |
| MS.gene05913 | MS.gene49874 | 0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene05914 | MS.gene49874 | 0.840499 | 8.38E-58 | -1.69E-46 |
| MS.gene059181 | MS.gene49874 | 0.80302 | 4.25E-49 | -1.69E-46 |
| MS.gene059303 | MS.gene49874 | 0.821133 | 4.75E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene49874 | 0.83289 | 7.30E-56 | -1.69E-46 |
| MS.gene059367 | MS.gene49874 | 0.816659 | 4.94E-52 | -1.69E-46 |
| MS.gene059455 | MS.gene49874 | 0.805396 | 1.36E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene49874 | 0.807697 | 4.45E-50 | -1.69E-46 |
| MS.gene059667 | MS.gene49874 | 0.853763 | 1.93E-61 | -1.69E-46 |
| MS.gene059677 | MS.gene49874 | 0.859035 | 5.46E-63 | -1.69E-46 |
| MS.gene059699 | MS.gene49874 | -0.835327 | 1.79E-56 | -1.69E-46 |
| MS.gene059703 | MS.gene49874 | -0.84234 | 2.74E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene49874 | 0.886309 | 3.83E-72 | -1.69E-46 |
| MS.gene059756 | MS.gene49874 | 0.850018 | 2.23E-60 | -1.69E-46 |
| MS.gene059801 | MS.gene49874 | 0.829758 | 4.30E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene49874 | 0.879801 | 9.26E-70 | -1.69E-46 |
| MS.gene059902 | MS.gene49874 | 0.825975 | 3.50E-54 | -1.69E-46 |
| MS.gene05996 | MS.gene49874 | 0.827376 | 1.62E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene49874 | 0.847893 | 8.67E-60 | -1.69E-46 |
| MS.gene06027 | MS.gene49874 | 0.813613 | 2.34E-51 | -1.69E-46 |
| MS.gene060295 | MS.gene49874 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene060482 | MS.gene49874 | 0.856651 | 2.79E-62 | -1.69E-46 |
| MS.gene060485 | MS.gene49874 | 0.816507 | 5.34E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene49874 | -0.807772 | 4.29E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene49874 | 0.818277 | 2.13E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene49874 | 0.88316 | 5.67E-71 | -1.69E-46 |
| MS.gene060778 | MS.gene49874 | 0.840068 | 1.09E-57 | -1.69E-46 |
| MS.gene06077 | MS.gene49874 | 0.868241 | 7.56E-66 | -1.69E-46 |
| MS.gene060804 | MS.gene49874 | 0.806051 | 9.92E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene49874 | 0.845958 | 2.93E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene49874 | 0.827985 | 1.16E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene49874 | 0.87483 | 4.97E-68 | -1.69E-46 |
| MS.gene06097 | MS.gene49874 | 0.803963 | 2.71E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene49874 | 0.885485 | 7.81E-72 | -1.69E-46 |
| MS.gene061150 | MS.gene49874 | 0.844329 | 8.09E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49874.t1 | MTR_4g016510 | 96.262 | 107 | 4 | 0 | 1 | 107 | 163 | 269 | 1.45e-71 | 214 |
| MS.gene49874.t1 | MTR_7g068530 | 67.021 | 94 | 30 | 1 | 1 | 94 | 161 | 253 | 1.06e-42 | 140 |
| MS.gene49874.t1 | MTR_7g068460 | 64.516 | 93 | 33 | 0 | 1 | 93 | 188 | 280 | 4.54e-40 | 134 |
| MS.gene49874.t1 | MTR_7g068550 | 60.638 | 94 | 37 | 0 | 1 | 94 | 161 | 254 | 3.43e-39 | 131 |
| MS.gene49874.t1 | MTR_3g070460 | 62.766 | 94 | 35 | 0 | 1 | 94 | 163 | 256 | 6.63e-38 | 128 |
| MS.gene49874.t1 | MTR_7g068500 | 61.290 | 93 | 36 | 0 | 1 | 93 | 187 | 279 | 4.79e-37 | 126 |
| MS.gene49874.t1 | MTR_7g068470 | 61.290 | 93 | 35 | 1 | 1 | 93 | 153 | 244 | 3.89e-36 | 123 |
| MS.gene49874.t1 | MTR_7g068470 | 61.290 | 93 | 35 | 1 | 1 | 93 | 157 | 248 | 4.38e-36 | 123 |
| MS.gene49874.t1 | MTR_7g068450 | 57.895 | 95 | 39 | 1 | 1 | 94 | 161 | 255 | 4.81e-36 | 123 |
| MS.gene49874.t1 | MTR_4g016500 | 86.207 | 58 | 8 | 0 | 50 | 107 | 383 | 440 | 1.09e-29 | 110 |
| MS.gene49874.t1 | MTR_7g068520 | 60.870 | 69 | 27 | 0 | 25 | 93 | 85 | 153 | 6.31e-24 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49874.t1 | AT3G11210 | 60.920 | 87 | 34 | 0 | 1 | 87 | 163 | 249 | 4.11e-35 | 121 |
| MS.gene49874.t1 | AT2G38180 | 51.064 | 94 | 37 | 3 | 1 | 92 | 161 | 247 | 9.03e-26 | 98.2 |
Find 27 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCCATTCAAAATGTTTC+TGG | 0.167567 | 4.2:+81154973 | None:intergenic |
| TGACAGCTGATTCTTCAAAT+TGG | 0.273635 | 4.2:+81154912 | None:intergenic |
| GAATCTTCTGCAAACTCATT+TGG | 0.330143 | 4.2:+81155056 | None:intergenic |
| GTGATGACCATTCGATGGTT+TGG | 0.411304 | 4.2:+81154935 | None:intergenic |
| TCTATAGCAACTGGATCATA+TGG | 0.419003 | 4.2:+81155032 | None:intergenic |
| CACTTCAGCAAAGGGATGAT+TGG | 0.428841 | 4.2:-81155446 | MS.gene49874:CDS |
| ATTGATTTCCAGTGTAGACT+TGG | 0.433496 | 4.2:+81155080 | None:intergenic |
| CTACTGTCAATGTCTCCAAC+TGG | 0.451353 | 4.2:-81155001 | MS.gene49874:CDS |
| GACAGCTGATTCTTCAAATT+GGG | 0.456804 | 4.2:+81154913 | None:intergenic |
| GGTTCCAGTCGGCGTCTTCG+AGG | 0.470091 | 4.2:+81155102 | None:intergenic |
| CTGGTCTGCACTTCAGCAAA+GGG | 0.483151 | 4.2:-81155454 | MS.gene49874:CDS |
| AGGTCCTCGAAGACGCCGAC+TGG | 0.497251 | 4.2:-81155106 | MS.gene49874:CDS |
| ATGTCAAGGCCATTGACCTC+TGG | 0.499532 | 4.2:-81155473 | MS.gene49874:CDS |
| TTGATTTCCAGTGTAGACTT+GGG | 0.516004 | 4.2:+81155081 | None:intergenic |
| TCTGGTCTGCACTTCAGCAA+AGG | 0.543201 | 4.2:-81155455 | MS.gene49874:CDS |
| TGGAATTCATTTGTCACATG+AGG | 0.558725 | 4.2:-81155159 | MS.gene49874:CDS |
| AAGTGCAGACCAGAGGTCAA+TGG | 0.560897 | 4.2:+81155464 | None:intergenic |
| TGCATTTCCAAACCATCGAA+TGG | 0.568329 | 4.2:-81154942 | MS.gene49874:CDS |
| AGTTGTGAAAGAGATATTGA+AGG | 0.577845 | 4.2:-81155126 | MS.gene49874:CDS |
| ATTGGGTGATGACCATTCGA+TGG | 0.584846 | 4.2:+81154930 | None:intergenic |
| ATGTTTCTGGAAGTTCCAGT+TGG | 0.594171 | 4.2:+81154986 | None:intergenic |
| ACTGGAACCCAAGTCTACAC+TGG | 0.596478 | 4.2:-81155088 | MS.gene49874:CDS |
| GGAATTCATTTGTCACATGA+GGG | 0.607224 | 4.2:-81155158 | MS.gene49874:CDS |
| GTGTAGACTTGGGTTCCAGT+CGG | 0.629499 | 4.2:+81155091 | None:intergenic |
| TTTGCTGAAGTGCAGACCAG+AGG | 0.667155 | 4.2:+81155457 | None:intergenic |
| TACTTACGTGAAGCAAACAT+CGG | 0.672886 | 4.2:+81155422 | None:intergenic |
| GTGCCATGAGATGAATGTCA+AGG | 0.713777 | 4.2:-81155487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATACTATAGAAAAATG+TGG | + | chr4.2:81155133-81155152 | None:intergenic | 20.0% |
| !!! | CACATTTTTCTATAGTATTA+AGG | - | chr4.2:81155131-81155150 | MS.gene49874:CDS | 20.0% |
| !!! | TTGTCTTGATACATTTTATA+GGG | - | chr4.2:81155220-81155239 | MS.gene49874:intron | 20.0% |
| ! | AAAATGTGGTTAAAAAATGC+TGG | + | chr4.2:81155119-81155138 | None:intergenic | 25.0% |
| ! | CTGGTAAAATAATGCTTATA+CGG | + | chr4.2:81155100-81155119 | None:intergenic | 25.0% |
| !! | ATCACATGTGTCTTATTAAA+AGG | - | chr4.2:81155190-81155209 | MS.gene49874:intron | 25.0% |
| !! | CTTGTCTTGATACATTTTAT+AGG | - | chr4.2:81155219-81155238 | MS.gene49874:intron | 25.0% |
| AGTTGTGAAAGAGATATTGA+AGG | - | chr4.2:81155277-81155296 | MS.gene49874:intron | 30.0% | |
| TTTCCCATTCAAAATGTTTC+TGG | + | chr4.2:81155433-81155452 | None:intergenic | 30.0% | |
| ! | ACTTCCAGAAACATTTTGAA+TGG | - | chr4.2:81155426-81155445 | MS.gene49874:intron | 30.0% |
| ! | CTTCCAGAAACATTTTGAAT+GGG | - | chr4.2:81155427-81155446 | MS.gene49874:intron | 30.0% |
| ! | CTTGATACATTTTATAGGGA+TGG | - | chr4.2:81155224-81155243 | MS.gene49874:intron | 30.0% |
| ACACAAGAACATGATATTGC+AGG | + | chr4.2:81155069-81155088 | None:intergenic | 35.0% | |
| GAATCTTCTGCAAACTCATT+TGG | + | chr4.2:81155350-81155369 | None:intergenic | 35.0% | |
| GGAATTCATTTGTCACATGA+GGG | - | chr4.2:81155245-81155264 | MS.gene49874:intron | 35.0% | |
| TACTTACGTGAAGCAAACAT+CGG | + | chr4.2:81154984-81155003 | None:intergenic | 35.0% | |
| TCTATAGCAACTGGATCATA+TGG | + | chr4.2:81155374-81155393 | None:intergenic | 35.0% | |
| TGGAATTCATTTGTCACATG+AGG | - | chr4.2:81155244-81155263 | MS.gene49874:intron | 35.0% | |
| TTGATTTCCAGTGTAGACTT+GGG | + | chr4.2:81155325-81155344 | None:intergenic | 35.0% | |
| ! | ATTGATTTCCAGTGTAGACT+TGG | + | chr4.2:81155326-81155345 | None:intergenic | 35.0% |
| ! | GTCTTTTCATCTATAGCAAC+TGG | + | chr4.2:81155383-81155402 | None:intergenic | 35.0% |
| !! | ATAGTTCTGAATCACAACTG+TGG | + | chr4.2:81155169-81155188 | None:intergenic | 35.0% |
| TGCATTTCCAAACCATCGAA+TGG | - | chr4.2:81155461-81155480 | MS.gene49874:CDS | 40.0% | |
| !! | ATGTTTCTGGAAGTTCCAGT+TGG | + | chr4.2:81155420-81155439 | None:intergenic | 40.0% |
| ATTGGGTGATGACCATTCGA+TGG | + | chr4.2:81155476-81155495 | None:intergenic | 45.0% | |
| CACTTCAGCAAAGGGATGAT+TGG | - | chr4.2:81154957-81154976 | MS.gene49874:CDS | 45.0% | |
| CTACTGTCAATGTCTCCAAC+TGG | - | chr4.2:81155402-81155421 | MS.gene49874:intron | 45.0% | |
| GTGATGACCATTCGATGGTT+TGG | + | chr4.2:81155471-81155490 | None:intergenic | 45.0% | |
| AAGTGCAGACCAGAGGTCAA+TGG | + | chr4.2:81154942-81154961 | None:intergenic | 50.0% | |
| ACTGGAACCCAAGTCTACAC+TGG | - | chr4.2:81155315-81155334 | MS.gene49874:intron | 50.0% | |
| ATGTCAAGGCCATTGACCTC+TGG | - | chr4.2:81154930-81154949 | MS.gene49874:CDS | 50.0% | |
| CTGGTCTGCACTTCAGCAAA+GGG | - | chr4.2:81154949-81154968 | MS.gene49874:CDS | 50.0% | |
| GTGTAGACTTGGGTTCCAGT+CGG | + | chr4.2:81155315-81155334 | None:intergenic | 50.0% | |
| TCTGGTCTGCACTTCAGCAA+AGG | - | chr4.2:81154948-81154967 | MS.gene49874:CDS | 50.0% | |
| TTTGCTGAAGTGCAGACCAG+AGG | + | chr4.2:81154949-81154968 | None:intergenic | 50.0% | |
| AGGTCCTCGAAGACGCCGAC+TGG | - | chr4.2:81155297-81155316 | MS.gene49874:intron | 65.0% | |
| GGTTCCAGTCGGCGTCTTCG+AGG | + | chr4.2:81155304-81155323 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 81154926 | 81155499 | 81154926 | ID=MS.gene49874 |
| chr4.2 | mRNA | 81154926 | 81155499 | 81154926 | ID=MS.gene49874.t1;Parent=MS.gene49874 |
| chr4.2 | exon | 81155429 | 81155499 | 81155429 | ID=MS.gene49874.t1.exon1;Parent=MS.gene49874.t1 |
| chr4.2 | CDS | 81155429 | 81155499 | 81155429 | ID=cds.MS.gene49874.t1;Parent=MS.gene49874.t1 |
| chr4.2 | exon | 81154926 | 81155184 | 81154926 | ID=MS.gene49874.t1.exon2;Parent=MS.gene49874.t1 |
| chr4.2 | CDS | 81154926 | 81155184 | 81154926 | ID=cds.MS.gene49874.t1;Parent=MS.gene49874.t1 |
| Gene Sequence |
| Protein sequence |
