AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465350 MtrunA17_Chr4g0064131 93.301 209 13 1 1 209 1 208 2.06e-122 345
Msa1465350 MtrunA17_Chr3g0137601 31.963 219 125 8 1 207 1 207 6.50e-29 107
Msa1465350 MtrunA17_Chr1g0183251 30.952 168 63 5 93 207 83 250 4.98e-19 82.8
Msa1465350 MtrunA17_Chr7g0260621 28.834 163 91 4 59 207 44 195 1.69e-18 80.1
Msa1465350 MtrunA17_Chr1g0184791 28.922 204 106 7 34 208 35 228 4.24e-18 79.7
Msa1465350 MtrunA17_Chr1g0166011 29.932 147 75 4 69 207 50 176 7.87e-18 77.8
Msa1465350 MtrunA17_Chr1g0190711 31.646 158 76 6 78 207 82 235 1.28e-16 75.9
Msa1465350 MtrunA17_Chr1g0187961 26.506 166 88 5 62 207 21 172 1.28e-16 74.3
Msa1465350 MtrunA17_Chr5g0411501 27.673 159 82 3 76 207 165 317 1.56e-16 76.6
Msa1465350 MtrunA17_Chr1g0187921 26.380 163 96 3 67 207 58 218 2.59e-16 74.7
Msa1465350 MtrunA17_Chr2g0330951 28.662 157 69 4 93 207 97 252 4.53e-16 74.7
Msa1465350 MtrunA17_Chr6g0486121 31.944 144 66 4 90 207 99 236 4.63e-16 74.3
Msa1465350 MtrunA17_Chr8g0366881 28.125 160 88 3 71 206 173 329 5.63e-16 75.1
Msa1465350 MtrunA17_Chr1g0184801 26.543 162 93 3 60 207 46 195 7.46e-16 72.8
Msa1465350 MtrunA17_Chr7g0260641 29.927 137 72 3 93 208 100 233 1.73e-15 72.8
Msa1465350 MtrunA17_Chr4g0004181 33.884 121 57 3 93 206 55 159 1.82e-15 71.2
Msa1465350 MtrunA17_Chr8g0390281 30.935 139 68 2 93 207 141 275 3.67e-15 72.4
Msa1465350 MtrunA17_Chr5g0428141 30.657 137 69 6 93 207 197 329 3.75e-15 72.8
Msa1465350 MtrunA17_Chr4g0069561 32.000 125 64 4 91 207 70 181 6.92e-15 69.7
Msa1465350 MtrunA17_Chr7g0270851 38.043 92 48 2 124 206 64 155 1.76e-13 65.5
Msa1465350 MtrunA17_Chr1g0209181 31.967 122 68 4 93 206 54 168 3.27e-13 65.1
Msa1465350 MtrunA17_Chr1g0193861 32.500 120 59 4 96 206 64 170 3.64e-13 65.1
Msa1465350 MtrunA17_Chr2g0332141 32.990 97 48 2 130 209 8 104 2.56e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465350 AT4G32280.1 28.745 247 132 8 1 208 1 242 2.52e-26 102
Msa1465350 AT1G04550.2 35.616 146 61 4 93 205 70 215 1.21e-21 89.4
Msa1465350 AT4G32280.2 43.902 82 43 1 130 208 119 200 1.17e-20 86.3
Msa1465350 AT2G33310.3 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1465350 AT2G33310.1 31.169 154 62 4 93 207 76 224 6.45e-20 85.1
Msa1465350 AT2G33310.2 31.169 154 62 4 93 207 77 225 6.98e-20 85.1
Msa1465350 AT5G25890.1 32.192 146 93 2 64 207 20 161 7.68e-20 83.2
Msa1465350 AT5G43700.1 29.927 137 78 3 79 207 49 175 2.12e-18 79.7
Msa1465350 AT4G28640.3 29.932 147 71 3 93 207 89 235 2.02e-17 78.2
Msa1465350 AT1G04240.1 31.655 139 77 3 78 207 50 179 2.16e-17 77.0
Msa1465350 AT4G28640.1 29.932 147 71 3 93 207 89 235 2.38e-17 78.2
Msa1465350 AT1G04240.2 31.655 139 77 3 78 207 150 279 3.15e-17 78.6
Msa1465350 AT4G28640.2 29.932 147 71 3 93 207 89 235 6.71e-17 77.8
Msa1465350 AT4G14550.1 30.147 136 72 2 93 207 77 210 8.73e-17 76.3
Msa1465350 AT4G14550.2 30.147 136 72 2 93 207 77 210 9.13e-17 76.3
Msa1465350 AT3G23030.1 26.994 163 84 5 61 207 21 164 1.79e-16 74.3
Msa1465350 AT3G23030.2 26.994 163 84 5 61 207 108 251 5.06e-16 74.7
Msa1465350 AT3G15540.1 33.884 121 63 2 93 206 71 181 5.19e-16 73.6
Msa1465350 AT3G17600.1 30.952 126 75 2 85 206 37 154 6.09e-16 72.4
Msa1465350 AT5G65670.1 30.657 137 69 3 93 206 184 317 6.35e-16 75.5
Msa1465350 AT5G65670.2 30.657 137 69 3 93 206 184 317 6.58e-16 75.5
Msa1465350 AT2G22670.5 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1465350 AT2G22670.2 32.374 139 67 5 93 207 166 301 2.61e-15 73.6
Msa1465350 AT2G22670.3 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1465350 AT2G22670.1 32.374 139 67 5 93 207 166 301 2.67e-15 73.6
Msa1465350 AT2G22670.4 32.374 139 67 5 93 207 183 318 3.55e-15 73.2
Msa1465350 AT1G15580.1 33.333 120 58 5 93 206 54 157 9.37e-15 69.3
Msa1465350 AT1G52830.1 31.667 120 61 4 94 206 72 177 2.11e-14 68.9
Msa1465350 AT3G23050.1 28.205 156 85 2 79 207 69 224 3.19e-14 69.7
Msa1465350 AT1G51950.1 27.746 173 87 3 72 207 77 248 3.45e-14 69.7
Msa1465350 AT3G16500.2 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1465350 AT3G16500.1 27.891 147 74 3 93 207 104 250 1.30e-13 68.2
Msa1465350 AT4G29080.1 27.778 144 75 3 93 207 144 287 1.49e-13 68.6
Msa1465350 AT1G04250.1 27.737 137 69 3 93 207 83 211 2.82e-13 66.6
Msa1465350 AT3G62100.1 38.372 86 45 1 130 207 84 169 9.78e-13 64.3
Msa1465350 AT3G04730.1 24.837 153 72 4 93 207 71 218 1.02e-12 65.5
Msa1465350 AT4G32280.3 26.471 204 109 7 1 168 1 199 1.07e-12 64.7
Msa1465350 AT2G46990.1 37.209 86 46 1 130 207 86 171 2.27e-12 63.2
Msa1465350 AT4G14550.3 29.752 121 62 2 93 192 77 195 3.98e-12 63.2
Msa1465350 AT1G15050.2 37.647 85 46 1 129 206 61 145 8.12e-12 61.2
Msa1465350 AT4G14560.1 32.558 86 50 1 130 207 76 161 1.01e-11 61.2
Msa1465350 AT1G15050.1 37.647 85 46 1 129 206 93 177 1.61e-11 61.2

Find 65 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACCCATTGATTAATATT+TGG 0.091033 tig0045175:+1900 Msa1465350:intergenic
TTGCTTTGCTCACCTTTAAT+TGG 0.204563 tig0045175:-1927 Msa1465350:three_prime_UTR
ATATTTGGGTTTCCAATTAA+AGG 0.209829 tig0045175:+1915 Msa1465350:intergenic
TCTCTTTGAATCATGATAAT+AGG 0.233271 tig0045175:-4089 Msa1465350:CDS
TCTGAGTGGCCAGGAGTTAA+TGG 0.256229 tig0045175:+3997 Msa1465350:intergenic
ATACCCATTGATTAATATTT+GGG 0.271124 tig0045175:+1901 Msa1465350:intergenic
CAAACATGTCCATCAAAGTT+TGG 0.287284 tig0045175:+3589 Msa1465350:intergenic
TACTCTCAACCAAACTTTGA+TGG 0.301864 tig0045175:-3598 Msa1465350:CDS
TCACAATATGGAGCTTCATT+TGG 0.317095 tig0045175:-4175 Msa1465350:exon
CTCTCTACACAATCACAATA+TGG 0.343546 tig0045175:-4187 Msa1465350:exon
GAGAGAAAGAGTGGGAAGGT+TGG 0.357245 tig0045175:+4023 Msa1465350:intergenic
TAGACCACCACCGAGAAATA+TGG 0.358386 tig0045175:+1760 Msa1465350:intergenic
CACAATATGGAGCTTCATTT+GGG 0.385933 tig0045175:-4174 Msa1465350:exon
ATCAAGACAAAGAAGGTGAT+TGG 0.388129 tig0045175:-3409 Msa1465350:CDS
TTCTTCCTCCTACAATTAAC+CGG 0.390508 tig0045175:+3765 Msa1465350:intergenic
CCCTGCTCTTAAGCAATTTG+AGG 0.399232 tig0045175:+2013 Msa1465350:intergenic
TTCTTGCTCAAGATATTTCA+TGG 0.399762 tig0045175:-3385 Msa1465350:CDS
GATGGCCTCCGGTTAATTGT+AGG 0.427386 tig0045175:-3773 Msa1465350:CDS
GATCACGTGGTCCCCATTGA+TGG 0.439591 tig0045175:-3714 Msa1465350:CDS
GAAACCCAAATATTAATCAA+TGG 0.447820 tig0045175:-1905 Msa1465350:three_prime_UTR
CTGAGTGGCCAGGAGTTAAT+GGG 0.451365 tig0045175:+3998 Msa1465350:intergenic
GATGATGAAGAAGCTCTTGT+TGG 0.454535 tig0045175:-3795 Msa1465350:CDS
TAATGGGAGGAGAGAAAGAG+TGG 0.454609 tig0045175:+4014 Msa1465350:intergenic
TCTCTCCTCCCATTAACTCC+TGG 0.458165 tig0045175:-4006 Msa1465350:CDS
CATAGCTATTTATTAATGAA+AGG 0.459720 tig0045175:+4250 Msa1465350:intergenic
AGAAAGAGTGGGAAGGTTGG+TGG 0.462033 tig0045175:+4026 Msa1465350:intergenic
GAACTTGAAGTCTTAAACGA+TGG 0.468843 tig0045175:+1966 Msa1465350:intergenic
GCCTCAAATTGCTTAAGAGC+AGG 0.470661 tig0045175:-2014 Msa1465350:CDS
AAACCCAAATATTAATCAAT+GGG 0.473163 tig0045175:-1904 Msa1465350:three_prime_UTR
ATAGCTATTTATTAATGAAA+GGG 0.475872 tig0045175:+4251 Msa1465350:intergenic
ATGGTTCTCATGATAATCAT+AGG 0.480012 tig0045175:-3695 Msa1465350:CDS
ATTATCATGAGAACCATCAA+TGG 0.488136 tig0045175:+3701 Msa1465350:intergenic
AGCTCTTGTTGGATGGCCTC+CGG 0.493311 tig0045175:-3784 Msa1465350:CDS
TTACTTGGTGATGGTGGTAG+TGG 0.498349 tig0045175:+3936 Msa1465350:intergenic
TGATCAACAACAGTATGAAC+TGG 0.501567 tig0045175:-3435 Msa1465350:CDS
TTGTCCATATTTCTCGGTGG+TGG 0.504778 tig0045175:-1764 Msa1465350:three_prime_UTR
GAATTACGTGAAGGTGAAGA+TGG 0.506755 tig0045175:-3673 Msa1465350:CDS
TTATCATGAGAACCATCAAT+GGG 0.508335 tig0045175:+3702 Msa1465350:intergenic
TATTAATTACTTGGTGATGG+TGG 0.510150 tig0045175:+3930 Msa1465350:intergenic
AAATTAACGTAGTCAGAAGT+TGG 0.516653 tig0045175:+1838 Msa1465350:intergenic
TAATATTAATTACTTGGTGA+TGG 0.522964 tig0045175:+3927 Msa1465350:intergenic
CGGACGAGAATTATTATAAG+TGG 0.529450 tig0045175:+4140 Msa1465350:intergenic
CTGGTTTATCAAGACAAAGA+AGG 0.557412 tig0045175:-3416 Msa1465350:CDS
GGTTGAGAGTATGAAATGAA+TGG 0.558722 tig0045175:+3610 Msa1465350:intergenic
TCATGATCATCTGAGTGGCC+AGG 0.559365 tig0045175:+3988 Msa1465350:intergenic
TACGTGAAGGTGAAGATGGA+AGG 0.560134 tig0045175:-3669 Msa1465350:CDS
GGAGGAGAGAAAGAGTGGGA+AGG 0.576479 tig0045175:+4019 Msa1465350:intergenic
AATGGGAGGAGAGAAAGAGT+GGG 0.579242 tig0045175:+4015 Msa1465350:intergenic
ATGAAGAAGCTCTTGTTGGA+TGG 0.580018 tig0045175:-3791 Msa1465350:CDS
CCTCAAATTGCTTAAGAGCA+GGG 0.580023 tig0045175:-2013 Msa1465350:CDS
TATCATGATTCAAAGAGAAG+TGG 0.584987 tig0045175:+4094 Msa1465350:intergenic
CTCAAATTGCTTAAGAGCAG+GGG 0.598831 tig0045175:-2012 Msa1465350:CDS
GGCCTCCGGTTAATTGTAGG+AGG 0.613414 tig0045175:-3770 Msa1465350:CDS
AGGTGTAGGAATAGCTCGAA+AGG 0.621460 tig0045175:-3649 Msa1465350:CDS
TTAGTAGCAGCAATATCGTA+CGG 0.636596 tig0045175:+4120 Msa1465350:intergenic
AAGGTGAAGATGGAAGGTGT+AGG 0.649720 tig0045175:-3663 Msa1465350:CDS
GTGAGCAAAGCAAACAACGT+TGG 0.654677 tig0045175:+1937 Msa1465350:intergenic
TTCCTCCTACAATTAACCGG+AGG 0.665193 tig0045175:+3768 Msa1465350:intergenic
TGGTTGTCCATATTTCTCGG+TGG 0.670450 tig0045175:-1767 Msa1465350:three_prime_UTR
TAATCATAGGAATTACGTGA+AGG 0.675805 tig0045175:-3682 Msa1465350:CDS
AGTGGCCAGGAGTTAATGGG+AGG 0.697461 tig0045175:+4001 Msa1465350:intergenic
TTGCTCAAGATATTTCATGG+AGG 0.720826 tig0045175:-3382 Msa1465350:intron
CATGATCATGATCATCTGAG+TGG 0.721603 tig0045175:+3983 Msa1465350:intergenic
AAATGATGTTGAAGATCACG+TGG 0.746908 tig0045175:-3727 Msa1465350:CDS
TATCATGAGAACCATCAATG+GGG 0.763816 tig0045175:+3703 Msa1465340:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAATAATATTAATTACT+TGG + tig0045175:2212-2231 Msa1465350:intergenic 10.0%
!! GTACATTAATATTATTTATA+TGG - tig0045175:2266-2285 Msa1465350:intron 10.0%
!! TAGAGATTAAAAAAAATATA+AGG - tig0045175:2979-2998 Msa1465350:intron 10.0%
!!! ATAAGAAAAATATTCTTTTA+AGG - tig0045175:3326-3345 Msa1465350:intron 10.0%
!! AATAAATGATGTATATAATT+TGG - tig0045175:3356-3375 Msa1465350:intron 10.0%
!! GTATAAGAATATAAATTATA+TGG + tig0045175:3554-3573 Msa1465350:intergenic 10.0%
!!! TTTTTTCTTATATTTGAAAT+CGG - tig0045175:3905-3924 Msa1465350:intron 10.0%
!! TTCACATATATTAAAAAAAT+TGG + tig0045175:3953-3972 Msa1465350:intergenic 10.0%
!! ATAGCTATTTATTAATGAAA+GGG + tig0045175:1882-1901 Msa0023950:intergenic 15.0%
!!! ATTAGTAGTACTAATTATTT+TGG + tig0045175:2608-2627 Msa1465350:intergenic 15.0%
!! TTCAATGAATGTTTATAATT+AGG + tig0045175:2815-2834 Msa1465350:intergenic 15.0%
!!! ATTTTTCTTATATTTGAGAA+GGG + tig0045175:3317-3336 Msa1465350:intergenic 15.0%
!!! TATTTTTCTTATATTTGAGA+AGG + tig0045175:3318-3337 Msa1465350:intergenic 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG + tig0045175:3648-3667 Msa1465350:intergenic 15.0%
!!! TTAATTTGTATCTAAAAAGT+TGG - tig0045175:4260-4279 Msa1465350:five_prime_UTR 15.0%
!! CATAGCTATTTATTAATGAA+AGG + tig0045175:1883-1902 Msa0023950:intergenic 20.0%
!!! TAATATTAATTACTTGGTGA+TGG + tig0045175:2206-2225 Msa1465350:intergenic 20.0%
!! AAGTACTAACATTGAAATAT+TGG + tig0045175:2240-2259 Msa1465350:intergenic 20.0%
!! TTGAAAGATGACTTATAATT+AGG + tig0045175:2858-2877 Msa1465350:intergenic 20.0%
!! AAAAAAAATATAAGGAGCAA+AGG - tig0045175:2987-3006 Msa1465350:intron 20.0%
!!! TTGGTTTTTTCTTTTTTGTT+TGG + tig0045175:3027-3046 Msa1465350:intergenic 20.0%
!! AAAAAGAAAAAACCAACATT+AGG - tig0045175:3031-3050 Msa1465350:intron 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG - tig0045175:3739-3758 Msa1465350:CDS 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG - tig0045175:3740-3759 Msa1465350:CDS 20.0%
!! AAATGGAATGAAATAATCAT+TGG + tig0045175:3788-3807 Msa1465350:intergenic 20.0%
!! TATTCAATAAACCTAAACAA+TGG - tig0045175:3878-3897 Msa1465350:intron 20.0%
!! GAAAAAAAAATCCATTGTTT+AGG + tig0045175:3892-3911 Msa1465350:intergenic 20.0%
!! TATATGTGAAATATGAAATC+AGG - tig0045175:3963-3982 Msa1465350:CDS 20.0%
!! ATATGTGAAATATGAAATCA+GGG - tig0045175:3964-3983 Msa1465350:CDS 20.0%
!! AAACCCAAATATTAATCAAT+GGG - tig0045175:4226-4245 Msa1465350:five_prime_UTR 20.0%
!!! ATACCCATTGATTAATATTT+GGG + tig0045175:4232-4251 Msa1465350:intergenic 20.0%
!!! AATACCCATTGATTAATATT+TGG + tig0045175:4233-4252 Msa1465350:intergenic 20.0%
!!! ATTAATCAATGGGTATTTTT+TGG - tig0045175:4236-4255 Msa1465350:five_prime_UTR 20.0%
!!! TTAATCAATGGGTATTTTTT+GGG - tig0045175:4237-4256 Msa1465350:five_prime_UTR 20.0%
!!! AGTAGTAGTTCAATATTTTT+TGG - tig0045175:4343-4362 Msa1465350:five_prime_UTR 20.0%
! TCTCTTTGAATCATGATAAT+AGG - tig0045175:2041-2060 Msa1465350:intron 25.0%
! TTAGTACTACTAATTAGTTG+AGG - tig0045175:2614-2633 Msa1465350:intron 25.0%
! GTATATATAGTGTATATGCA+CGG - tig0045175:2636-2655 Msa1465350:intron 25.0%
! TGTTTATAATTAGGCATACA+AGG + tig0045175:2806-2825 Msa1465350:intergenic 25.0%
! AGTTTGCATTAAAATGTGTT+AGG - tig0045175:2927-2946 Msa1465350:intron 25.0%
!! AAAGTTGGAGTATTTATTGA+GGG + tig0045175:3682-3701 Msa1465350:intergenic 25.0%
!! AAAAGTTGGAGTATTTATTG+AGG + tig0045175:3683-3702 Msa1465350:intergenic 25.0%
! AAATATGAAATCAGGGTTTA+GGG - tig0045175:3971-3990 Msa1465350:CDS 25.0%
! CAAACTTTCTCTAACAATTA+AGG - tig0045175:4016-4035 Msa1465350:CDS 25.0%
! CTAAATAAAACTTGTGTGTT+TGG - tig0045175:4064-4083 Msa1465350:CDS 25.0%
!! ATATTTGGGTTTCCAATTAA+AGG + tig0045175:4218-4237 Msa1465350:intergenic 25.0%
! GAAACCCAAATATTAATCAA+TGG - tig0045175:4225-4244 Msa1465350:five_prime_UTR 25.0%
TATCATGATTCAAAGAGAAG+TGG + tig0045175:2039-2058 Msa1465350:intergenic 30.0%
!! TATTAATTACTTGGTGATGG+TGG + tig0045175:2203-2222 Msa1465350:intergenic 30.0%
TTATCATGAGAACCATCAAT+GGG + tig0045175:2431-2450 Msa1465350:intergenic 30.0%
ATTATCATGAGAACCATCAA+TGG + tig0045175:2432-2451 Msa1465350:intergenic 30.0%
ATGGTTCTCATGATAATCAT+AGG - tig0045175:2435-2454 Msa1465350:intron 30.0%
TAATCATAGGAATTACGTGA+AGG - tig0045175:2448-2467 Msa1465350:intron 30.0%
TCATGTAGTTGGAAATTAAC+AGG - tig0045175:2666-2685 Msa1465350:intron 30.0%
TTCTTGCTCAAGATATTTCA+TGG - tig0045175:2745-2764 Msa1465350:intron 30.0%
TATCATTAATTAGTGCAAGC+TGG - tig0045175:2775-2794 Msa1465350:intron 30.0%
CATTAAAATGTGTTAGGAGT+TGG - tig0045175:2933-2952 Msa1465350:intron 30.0%
ACTTAACTAAGACCTAATGT+TGG + tig0045175:3046-3065 Msa1465350:intergenic 30.0%
CATGTTAAGCAACCTAAAAA+GGG + tig0045175:3504-3523 Msa1465350:intergenic 30.0%
ACATGTTAAGCAACCTAAAA+AGG + tig0045175:3505-3524 Msa1465350:intergenic 30.0%
! AAGTGACACTCATTTTGTAA+CGG + tig0045175:3582-3601 Msa1465350:intergenic 30.0%
GTATTTATTGAGGGTAAAGT+TGG + tig0045175:3673-3692 Msa1465350:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG + tig0045175:3697-3716 Msa1465350:intergenic 30.0%
GAAATATGAAATCAGGGTTT+AGG - tig0045175:3970-3989 Msa1465350:CDS 30.0%
! AGGGTTTAGGGTTTATAATT+AGG - tig0045175:3983-4002 Msa1465350:CDS 30.0%
! GGGTTTAGGGTTTATAATTA+GGG - tig0045175:3984-4003 Msa1465350:CDS 30.0%
AAATTAACGTAGTCAGAAGT+TGG + tig0045175:4295-4314 Msa1465350:intergenic 30.0%
!! TTTTGGTTGTCCATATTTCT+CGG - tig0045175:4360-4379 Msa1465350:five_prime_UTR 30.0%
CTCTCTACACAATCACAATA+TGG - tig0045175:1943-1962 Msa1465350:three_prime_UTR 35.0%
TCACAATATGGAGCTTCATT+TGG - tig0045175:1955-1974 Msa1465350:three_prime_UTR 35.0%
CACAATATGGAGCTTCATTT+GGG - tig0045175:1956-1975 Msa1465350:three_prime_UTR 35.0%
CGGACGAGAATTATTATAAG+TGG + tig0045175:1993-2012 Msa1465350:intergenic 35.0%
TTAGTAGCAGCAATATCGTA+CGG + tig0045175:2013-2032 Msa1465350:intergenic 35.0%
! ACGTAGTTTTTCTCAACTCT+TGG - tig0045175:2066-2085 Msa1465350:intron 35.0%
TTCTTCCTCCTACAATTAAC+CGG + tig0045175:2368-2387 Msa1465350:intergenic 35.0%
AAATGATGTTGAAGATCACG+TGG - tig0045175:2403-2422 Msa1465350:intron 35.0%
TATCATGAGAACCATCAATG+GGG + tig0045175:2430-2449 Msa1465350:intergenic 35.0%
! GGTTGAGAGTATGAAATGAA+TGG + tig0045175:2523-2542 Msa1465350:intergenic 35.0%
TACTCTCAACCAAACTTTGA+TGG - tig0045175:2532-2551 Msa1465350:intron 35.0%
CAAACATGTCCATCAAAGTT+TGG + tig0045175:2544-2563 Msa1465350:intergenic 35.0%
ACGGCATTAATTCATGTAGT+TGG - tig0045175:2655-2674 Msa1465350:intron 35.0%
TGATCAACAACAGTATGAAC+TGG - tig0045175:2695-2714 Msa1465350:intron 35.0%
CTGGTTTATCAAGACAAAGA+AGG - tig0045175:2714-2733 Msa1465350:intron 35.0%
ATCAAGACAAAGAAGGTGAT+TGG - tig0045175:2721-2740 Msa1465350:intron 35.0%
TTGCTCAAGATATTTCATGG+AGG - tig0045175:2748-2767 Msa1465350:intron 35.0%
AAAATGTGTTAGGAGTTGGA+AGG - tig0045175:2937-2956 Msa1465350:intron 35.0%
AAATATAAGGAGCAAAGGTG+TGG - tig0045175:2992-3011 Msa1465350:intron 35.0%
! ACAACAACCTCTTCTTTTCT+GGG + tig0045175:3132-3151 Msa1465350:intergenic 35.0%
AAAAGAAGAGGTTGTTGTCA+TGG - tig0045175:3134-3153 Msa1465350:intron 35.0%
AGTGAAAGTCTATGTGAACT+AGG - tig0045175:3172-3191 Msa1465350:intron 35.0%
!!! CTAGGCATGGTAAGTTTTTT+TGG - tig0045175:3190-3209 Msa1465350:intron 35.0%
! AATGCAAAGTTGCCCTTTTT+AGG - tig0045175:3489-3508 Msa1465350:intron 35.0%
TTGGCACACAGATTAAGAAA+TGG + tig0045175:3805-3824 Msa1465350:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - tig0045175:3831-3850 Msa1465350:intron 35.0%
GAACTTGAAGTCTTAAACGA+TGG + tig0045175:4167-4186 Msa1465350:intergenic 35.0%
TTGCTTTGCTCACCTTTAAT+TGG - tig0045175:4203-4222 Msa1465350:five_prime_UTR 35.0%
CATGATCATGATCATCTGAG+TGG + tig0045175:2150-2169 Msa1465350:intergenic 40.0%
GATGATGAAGAAGCTCTTGT+TGG - tig0045175:2335-2354 Msa1465350:intron 40.0%
ATGAAGAAGCTCTTGTTGGA+TGG - tig0045175:2339-2358 Msa1465350:intron 40.0%
GAATTACGTGAAGGTGAAGA+TGG - tig0045175:2457-2476 Msa1465350:intron 40.0%
AATGAAGCCCAGAAAAGAAG+AGG - tig0045175:3122-3141 Msa1465350:intron 40.0%
! GACAACAACCTCTTCTTTTC+TGG + tig0045175:3133-3152 Msa1465350:intergenic 40.0%
AAGTCTATGTGAACTAGGCA+TGG - tig0045175:3177-3196 Msa1465350:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - tig0045175:3381-3400 Msa1465350:intron 40.0%
!! ATGTTAACTTGTGCCCTCAA+GGG - tig0045175:3382-3401 Msa1465350:intron 40.0%
TTGCTTAACATGTGCCCTTA+GGG - tig0045175:3512-3531 Msa1465350:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + tig0045175:3529-3548 Msa1465350:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + tig0045175:3530-3549 Msa1465350:intergenic 40.0%
!! GACACTCATTTTGTAACGGA+AGG + tig0045175:3578-3597 Msa1465350:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - tig0045175:3835-3854 Msa1465350:intron 40.0%
CCTCAAATTGCTTAAGAGCA+GGG - tig0045175:4117-4136 Msa1465350:CDS 40.0%
CTCAAATTGCTTAAGAGCAG+GGG - tig0045175:4118-4137 Msa1465350:CDS 40.0%
AATGGGAGGAGAGAAAGAGT+GGG + tig0045175:2118-2137 Msa1465350:intergenic 45.0%
TAATGGGAGGAGAGAAAGAG+TGG + tig0045175:2119-2138 Msa1465350:intergenic 45.0%
!! TTACTTGGTGATGGTGGTAG+TGG + tig0045175:2197-2216 Msa1465350:intergenic 45.0%
TTCCTCCTACAATTAACCGG+AGG + tig0045175:2365-2384 Msa1465350:intergenic 45.0%
TACGTGAAGGTGAAGATGGA+AGG - tig0045175:2461-2480 Msa1465350:intron 45.0%
! AAGGTGAAGATGGAAGGTGT+AGG - tig0045175:2467-2486 Msa1465350:intron 45.0%
AGGTGTAGGAATAGCTCGAA+AGG - tig0045175:2481-2500 Msa1465350:intron 45.0%
TGTGTTAGGAGTTGGAAGGA+TGG - tig0045175:2941-2960 Msa1465350:intron 45.0%
GTGTTAGGAGTTGGAAGGAT+GGG - tig0045175:2942-2961 Msa1465350:intron 45.0%
TCCTTAACATGTGCCCTTGA+GGG + tig0045175:3398-3417 Msa1465350:intergenic 45.0%
TTCCTTAACATGTGCCCTTG+AGG + tig0045175:3399-3418 Msa1465350:intergenic 45.0%
GTTGCTTAACATGTGCCCTT+AGG - tig0045175:3511-3530 Msa1465350:intron 45.0%
!! ATGAGTGTCGCTTTACGCTT+TGG + tig0045175:3824-3843 Msa1465350:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - tig0045175:3834-3853 Msa1465350:intron 45.0%
GCCTCAAATTGCTTAAGAGC+AGG - tig0045175:4116-4135 Msa1465350:CDS 45.0%
CCCTGCTCTTAAGCAATTTG+AGG + tig0045175:4120-4139 Msa1465350:intergenic 45.0%
GTGAGCAAAGCAAACAACGT+TGG + tig0045175:4196-4215 Msa1465350:intergenic 45.0%
TGGTTGTCCATATTTCTCGG+TGG - tig0045175:4363-4382 Msa1465350:five_prime_UTR 45.0%
TTGTCCATATTTCTCGGTGG+TGG - tig0045175:4366-4385 Msa1465350:five_prime_UTR 45.0%
TAGACCACCACCGAGAAATA+TGG + tig0045175:4373-4392 Msa1465350:intergenic 45.0%
!!! TTAATTTATTTGTTTAATTT+AGG - tig0045175:2303-2322 Msa1465350:intron 5.0%
!! TATAAGAATATAAATTATAT+GGG + tig0045175:3553-3572 Msa1465350:intergenic 5.0%
AGAAAGAGTGGGAAGGTTGG+TGG + tig0045175:2107-2126 Msa1465350:intergenic 50.0%
GAGAGAAAGAGTGGGAAGGT+TGG + tig0045175:2110-2129 Msa1465350:intergenic 50.0%
TCTCTCCTCCCATTAACTCC+TGG - tig0045175:2124-2143 Msa1465350:intron 50.0%
CTGAGTGGCCAGGAGTTAAT+GGG + tig0045175:2135-2154 Msa1465350:intergenic 50.0%
TCTGAGTGGCCAGGAGTTAA+TGG + tig0045175:2136-2155 Msa1465350:intergenic 50.0%
TCATGATCATCTGAGTGGCC+AGG + tig0045175:2145-2164 Msa1465350:intergenic 50.0%
GATGGCCTCCGGTTAATTGT+AGG - tig0045175:2357-2376 Msa1465350:intron 50.0%
GGAGGAGAGAAAGAGTGGGA+AGG + tig0045175:2114-2133 Msa1465350:intergenic 55.0%
AGTGGCCAGGAGTTAATGGG+AGG + tig0045175:2132-2151 Msa1465350:intergenic 55.0%
AGCTCTTGTTGGATGGCCTC+CGG - tig0045175:2346-2365 Msa1465350:intron 55.0%
GGCCTCCGGTTAATTGTAGG+AGG - tig0045175:2360-2379 Msa1465350:intron 55.0%
GATCACGTGGTCCCCATTGA+TGG - tig0045175:2416-2435 Msa1465350:intron 55.0%
! GCCCTCAAGGGCACATGTTA+AGG - tig0045175:3394-3413 Msa1465350:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0045175 gene 1759 4393 1759 ID=Msa1465350;Name=Msa1465350
tig0045175 mRNA 1759 4393 1759 ID=Msa1465350-mRNA-1;Parent=Msa1465350;Name=Msa1465350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=203|1|1|1|0.66|0.75|4|249|209
tig0045175 exon 1759 2059 1759 ID=Msa1465350-mRNA-1:exon:24768;Parent=Msa1465350-mRNA-1
tig0045175 exon 3383 3464 3383 ID=Msa1465350-mRNA-1:exon:24767;Parent=Msa1465350-mRNA-1
tig0045175 exon 3583 3827 3583 ID=Msa1465350-mRNA-1:exon:24766;Parent=Msa1465350-mRNA-1
tig0045175 exon 3940 4393 3940 ID=Msa1465350-mRNA-1:exon:24765;Parent=Msa1465350-mRNA-1
tig0045175 five_prime_UTR 4191 4393 4191 ID=Msa1465350-mRNA-1:five_prime_utr;Parent=Msa1465350-mRNA-1
tig0045175 CDS 3940 4190 3940 ID=Msa1465350-mRNA-1:cds;Parent=Msa1465350-mRNA-1
tig0045175 CDS 3583 3827 3583 ID=Msa1465350-mRNA-1:cds;Parent=Msa1465350-mRNA-1
tig0045175 CDS 3383 3464 3383 ID=Msa1465350-mRNA-1:cds;Parent=Msa1465350-mRNA-1
tig0045175 CDS 2008 2059 2008 ID=Msa1465350-mRNA-1:cds;Parent=Msa1465350-mRNA-1
tig0045175 three_prime_UTR 1759 2007 1759 ID=Msa1465350-mRNA-1:three_prime_utr;Parent=Msa1465350-mRNA-1
Gene Sequence

>Msa1465350

ATGGAGCTTCATTTGGGTCTTGCTCTCTCCACTTATAATAATTCTCGTCCGTACGATATTGCTGCTACTAATAGCCACTTCTCTTTGAATCATGATAATAGGAAACGTAGTTTTTCTCAACTCTTGGAGCATGCAGCAGAAACCACCAACCTTCCCACTCTTTCTCTCCTCCCATTAACTCCTGGCCACTCAGATGATCATGATCATGATGATCAACACTGCTCTCACAGCTCCACTACCACCATCACCAAGAGCAATGAAGATGATGAAGAAGCTCTTGTTGGATGGCCTCCGGTTAATTGTAGGAGGAAGAAAATTCGTTCTAATGAAAATGATGTTGAAGATCACGTGGTCCCCATTGATGGTTCTCATGATAATCATAGGAATTACGTGAAGGTGAAGATGGAAGGTGTAGGAATAGCTCGAAAGGTTAATCTTAGCATGCACCATTCATTTCATACTCTCAACCAAACTTTGATGGACATGTTTGAAAAATGTGATCATGATCAACAACAGTATGAACTGGTTTATCAAGACAAAGAAGGTGATTGGCTTCTTGCTCAAGATATTTCATGGAGAAGTTTCATTGAATGTGCGCAACGCCTCAAATTGCTTAAGAGCAGGGGATAG

Protein sequence

>Msa1465350

MELHLGLALSTYNNSRPYDIAATNSHFSLNHDNRKRSFSQLLEHAAETTNLPTLSLLPLTPGHSDDHDHDDQHCSHSSTTTITKSNEDDEEALVGWPPVNCRRKKIRSNENDVEDHVVPIDGSHDNHRNYVKVKMEGVGIARKVNLSMHHSFHTLNQTLMDMFEKCDHDQQQYELVYQDKEGDWLLAQDISWRSFIECAQRLKLLKSRG*