AlfalfaGEDB | Msa0030690

M. sativa cultivar zhongmu-4 / Msa0030690

KEGG: K16732
GO: GO:0000226 GO:0000278 GO:0000280 GO:0000281 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008017 GO:0008092 GO:0008150 GO:0009524 GO:0009574 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022607 GO:0030863 GO:0030981 GO:0031109 GO:0032502 GO:0032506 GO:0034622 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044002 GO:0044085 GO:0044111 GO:0044115 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0046785 GO:0048285 GO:0048646 GO:0048856 GO:0050896 GO:0051258 GO:0051301 GO:0051701 GO:0051704 GO:0051707 GO:0051816 GO:0052093 GO:0052095 GO:0052096 GO:0055028 GO:0061640 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047
PFAM: PF03999.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030690	XP_013468782.1	89.667	300	18	2	1	288	431	729	1.18e-171	503

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030690	sp\|Q9FHM4\|MA653_ARATH	50.000	298	106	8	1	286	434	700	8.19e-74	242

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015570	Msa0030690	0.828946	6.777332e-55	-8.615850e-47
Msa0016530	Msa0030690	0.863576	2.255948e-64	-8.615850e-47
Msa0018920	Msa0030690	0.804634	1.966147e-49	-8.615850e-47
Msa0019930	Msa0030690	0.800107	1.682851e-48	-8.615850e-47
Msa0020540	Msa0030690	0.805699	1.176466e-49	-8.615850e-47
Msa0030070	Msa0030690	0.896260	4.376993e-76	-8.615850e-47
Msa0030690	Msa0032970	0.818878	1.557869e-52	-8.615850e-47
Msa0030690	Msa0032980	0.892452	1.566560e-74	-8.615850e-47
Msa0030690	Msa0040640	0.882510	9.803526e-71	-8.615850e-47
Msa0030690	Msa0050150	0.832615	8.542201e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030690	MtrunA17_Chr1g0188201	89.667	300	18	2	1	288	431	729	1.08e-175	503
Msa0030690	MtrunA17_Chr6g0476051	52.131	305	102	9	1	286	430	709	1.82e-88	278
Msa0030690	MtrunA17_Chr7g0245851	39.792	289	129	10	1	284	781	1029	1.62e-46	167
Msa0030690	MtrunA17_Chr1g0164981	45.370	108	59	0	1	108	443	550	5.92e-25	104
Msa0030690	MtrunA17_Chr8g0354131	46.667	75	40	0	1	75	433	507	2.46e-16	79.0
Msa0030690	MtrunA17_Chr5g0444881	48.544	103	48	2	1	98	434	536	3.34e-15	75.5
Msa0030690	MtrunA17_Chr3g0122591	33.333	138	77	4	1	127	446	579	6.12e-14	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0030690	AT5G51600.1	50.000	298	106	8	1	286	434	700	8.32e-75	242
Msa0030690	AT3G60840.1	35.254	295	132	12	1	284	430	676	2.27e-37	140
Msa0030690	AT4G26760.1	50.000	102	46	2	1	97	433	534	3.14e-23	99.8
Msa0030690	AT1G14690.1	41.509	106	50	1	1	94	443	548	2.62e-21	94.0
Msa0030690	AT1G14690.2	41.509	106	50	1	1	94	443	548	2.62e-21	94.0
Msa0030690	AT5G55230.2	49.515	103	47	2	1	98	462	564	3.38e-16	79.0
Msa0030690	AT5G55230.3	49.515	103	47	2	1	98	433	535	4.16e-16	78.6
Msa0030690	AT5G55230.1	49.515	103	47	2	1	98	433	535	4.16e-16	78.6
Msa0030690	AT5G62250.2	60.920	87	29	1	1	87	436	517	1.31e-15	77.0
Msa0030690	AT5G62250.1	60.920	87	29	1	1	87	436	517	1.31e-15	77.0

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Find 85 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCCCAGAGTGTAAAGA+AGG	0.521777	1_1:+57096140	Msa0030690:CDS
AAGCCCCAGAGTGTAAAGAA+GGG	0.647810	1_1:+57096141	Msa0030690:CDS
AAGGGACCTAGGATGTCAAC+CGG	0.537940	1_1:+57096159	Msa0030690:CDS
AATATTCCTTTGAGGAAAGA+CGG	0.535863	1_1:+57097350	Msa0030690:CDS
AATCATAAGTCAATTGTAAT+TGG	0.224252	1_1:+57097437	Msa0030690:three_prime_UTR
AATTAGAATCTCCTCTGACA+AGG	0.638966	1_1:+57096984	Msa0030690:CDS
ACAAATGATAGCAGAACAGG+AGG	0.669454	1_1:+57096089	Msa0030690:CDS
ACAATAATTCTTCATATAGG+TGG	0.532173	1_1:-57097607	None:intergenic
ACAGTAGCTGACGACGGAAC+TGG	0.436358	1_1:-57097292	None:intergenic
ACATTCATAGAAACTGACGA+CGG	0.786540	1_1:-57097259	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGACTTCAAAAACTATAGCA+TGG	+	chr1_1:57095619-57095638	Msa0030690:CDS	30.0%
GACTTCAAAAACTATAGCAT+GGG	+	chr1_1:57095620-57095639	Msa0030690:CDS	30.0%
AAAAACTATAGCATGGGAAA+AGG	+	chr1_1:57095626-57095645	Msa0030690:CDS	30.0%
GCCTATTCAAATGAAATAAG+AGG	-	chr1_1:57095893-57095912	None:intergenic	30.0%
TAGTATATTGTCTCAGACAT+TGG	+	chr1_1:57095942-57095961	Msa0030690:intron	30.0%
AGTATATTGTCTCAGACATT+GGG	+	chr1_1:57095943-57095962	Msa0030690:intron	30.0%
CAGATAAATAAAATGTTGCC+TGG	-	chr1_1:57095978-57095997	None:intergenic	30.0%
TACACACAACATCTATTTGT+TGG	-	chr1_1:57096009-57096028	None:intergenic	30.0%
TAACTTAGTTGATCAAACTG+AGG	-	chr1_1:57096291-57096310	None:intergenic	30.0%
TAGATACACTAGTCAAAAGT+TGG	-	chr1_1:57096651-57096670	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	57095603	57097696	57095603	ID=Msa0030690;Name=Msa0030690
chr1_1	mRNA	57095603	57097696	57095603	ID=Msa0030690-mRNA-1;Parent=Msa0030690;Name=Msa0030690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=3\|0.66\|0.75\|1\|0.66\|0.75\|4\|300\|288
chr1_1	exon	57095603	57095677	57095603	ID=Msa0030690-mRNA-1:exon:17187;Parent=Msa0030690-mRNA-1
chr1_1	exon	57095808	57095882	57095808	ID=Msa0030690-mRNA-1:exon:17188;Parent=Msa0030690-mRNA-1
chr1_1	exon	57096069	57096306	57096069	ID=Msa0030690-mRNA-1:exon:17189;Parent=Msa0030690-mRNA-1
chr1_1	exon	57096915	57097696	57096915	ID=Msa0030690-mRNA-1:exon:17190;Parent=Msa0030690-mRNA-1
chr1_1	five_prime_UTR	57095603	57095605	57095603	ID=Msa0030690-mRNA-1:five_prime_utr;Parent=Msa0030690-mRNA-1
chr1_1	CDS	57095606	57095677	57095606	ID=Msa0030690-mRNA-1:cds;Parent=Msa0030690-mRNA-1
chr1_1	CDS	57095808	57095882	57095808	ID=Msa0030690-mRNA-1:cds;Parent=Msa0030690-mRNA-1
chr1_1	CDS	57096069	57096306	57096069	ID=Msa0030690-mRNA-1:cds;Parent=Msa0030690-mRNA-1
chr1_1	CDS	57096915	57097396	57096915	ID=Msa0030690-mRNA-1:cds;Parent=Msa0030690-mRNA-1
chr1_1	three_prime_UTR	57097397	57097696	57097397	ID=Msa0030690-mRNA-1:three_prime_utr;Parent=Msa0030690-mRNA-1

Gene Sequence

>Msa0030690

ATGGTAGATGCATTGACTTCAAAAACTATAGCATGGGAAAAGGAAAAAGGTTTCGAATTCACATATGATGGTATTCGTCTACTCTCAATGATTGAAGAGTACAATATATTACGACAAGAGAAAGAGCAGGAACGTCGTAGGCAGCGGGACCTGAAGAAGCTTCAGGGACAAATGATAGCAGAACAGGAGGCACTATATGGATCAAAACCAAGCCCATCAAAGCCCCAGAGTGTAAAGAAGGGACCTAGGATGTCAACCGGAGGGGCAGCTAGTCGAAGAGTCTCCATGGGAGGAGCAATGCTTCAAACTCCAAAACCTGATTCAAAAGCTACTCATTCACGTGCCGTGAGAAAGGTTGACAAAGTGCCTCAGTTTGATCAACTAACTCGAAGAGGACTGGATATTGCTGGGATTCCTGCAAAAAAGCACTCACTTGGTGCTGCTAGTGCCTATGAATTAGAATCTCCTCTGACAAGGCAACCTTTTTCTCCCCTCTCATCTAATAATGTATCATCAAAAGCAAATGTAGCGAATGCTGCAAATGAGCATATCATACCGAGTGAAAAGTTGCCGAAAACAATGGCACTTAACAATATGCCCTTTGTTAGTCCCTGCAAGGCAATGACTGCGGCTGATCAAGAGAATAGAACTCCAAAGACAGTGCCTATTCCTATCCCTGCAACACCTTCAACAGCATCAATTCCTATGAATATGGCCATGACTCCAGTTCCGTCGTCAGTTTCTATGAATGTGGCCGTGACTCCAGTTCCGTCGTCAGCTACTGTTGGAGTATGCGACGTGATTCCAGTCCAAGAGATTGAATATTCCTTTGAGGAAAGACGGCTCGCTTATTATATGTTAGCATGA

Protein sequence

>Msa0030690

MVDALTSKTIAWEKEKGFEFTYDGIRLLSMIEEYNILRQEKEQERRRQRDLKKLQGQMIAEQEALYGSKPSPSKPQSVKKGPRMSTGGAASRRVSMGGAMLQTPKPDSKATHSRAVRKVDKVPQFDQLTRRGLDIAGIPAKKHSLGAASAYELESPLTRQPFSPLSSNNVSSKANVANAANEHIIPSEKLPKTMALNNMPFVSPCKAMTAADQENRTPKTVPIPIPATPSTASIPMNMAMTPVPSSVSMNVAVTPVPSSATVGVCDVIPVQEIEYSFEERRLAYYMLA*