Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176370 | XP_003591831.2 | 98.715 | 467 | 6 | 0 | 1 | 467 | 1 | 467 | 0.0 | 952 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176370 | G7I4W9 | 98.715 | 467 | 6 | 0 | 1 | 467 | 1 | 467 | 0.0 | 952 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003840 | Msa0176370 | 0.814618 | 1.405780e-51 | -8.615850e-47 |
| Msa0005500 | Msa0176370 | -0.825788 | 3.872091e-54 | -8.615850e-47 |
| Msa0011410 | Msa0176370 | -0.811223 | 7.796961e-51 | -8.615850e-47 |
| Msa0034590 | Msa0176370 | -0.814597 | 1.421004e-51 | -8.615850e-47 |
| Msa0036350 | Msa0176370 | 0.873174 | 1.804214e-67 | -8.615850e-47 |
| Msa0042520 | Msa0176370 | -0.804280 | 2.329773e-49 | -8.615850e-47 |
| Msa0049670 | Msa0176370 | -0.813905 | 2.019933e-51 | -8.615850e-47 |
| Msa0078110 | Msa0176370 | -0.803818 | 2.907049e-49 | -8.615850e-47 |
| Msa0083200 | Msa0176370 | -0.804727 | 1.879720e-49 | -8.615850e-47 |
| Msa0127220 | Msa0176370 | -0.813920 | 2.005273e-51 | -8.615850e-47 |
| Msa0129820 | Msa0176370 | -0.816465 | 5.454587e-52 | -8.615850e-47 |
| Msa0130500 | Msa0176370 | 0.861352 | 1.089549e-63 | -8.615850e-47 |
| Msa0154880 | Msa0176370 | -0.807991 | 3.857017e-50 | -8.615850e-47 |
| Msa0170640 | Msa0176370 | -0.803574 | 3.266897e-49 | -8.615850e-47 |
| Msa0176370 | Msa0183960 | -0.821277 | 4.398683e-53 | -8.615850e-47 |
| Msa0176370 | Msa0186400 | -0.815772 | 7.789613e-52 | -8.615850e-47 |
| Msa0176370 | Msa0193950 | 0.809979 | 1.447332e-50 | -8.615850e-47 |
| Msa0176370 | Msa0198220 | -0.803783 | 2.956283e-49 | -8.615850e-47 |
| Msa0176370 | Msa0219720 | -0.800769 | 1.233744e-48 | -8.615850e-47 |
| Msa0176370 | Msa0228360 | -0.806889 | 6.607050e-50 | -8.615850e-47 |
| Msa0176370 | Msa0232660 | -0.809651 | 1.702902e-50 | -8.615850e-47 |
| Msa0176370 | Msa0242720 | 0.803230 | 3.849086e-49 | -8.615850e-47 |
| Msa0176370 | Msa0258280 | -0.813051 | 3.112286e-51 | -8.615850e-47 |
| Msa0176370 | Msa0259770 | -0.802240 | 6.162054e-49 | -8.615850e-47 |
| Msa0176370 | Msa0261020 | -0.807068 | 6.054735e-50 | -8.615850e-47 |
| Msa0176370 | Msa0264580 | -0.817253 | 3.629804e-52 | -8.615850e-47 |
| Msa0176370 | Msa0278340 | -0.800546 | 1.369915e-48 | -8.615850e-47 |
| Msa0176370 | Msa0294200 | 0.818268 | 2.142315e-52 | -8.615850e-47 |
| Msa0176370 | Msa0295030 | -0.803010 | 4.275603e-49 | -8.615850e-47 |
| Msa0176370 | Msa0304350 | -0.802927 | 4.446818e-49 | -8.615850e-47 |
| Msa0176370 | Msa0314240 | 0.802045 | 6.759073e-49 | -8.615850e-47 |
| Msa0176370 | Msa0320170 | 0.801985 | 6.951764e-49 | -8.615850e-47 |
| Msa0176370 | Msa0336550 | -0.814913 | 1.209282e-51 | -8.615850e-47 |
| Msa0176370 | Msa0339970 | -0.815245 | 1.020353e-51 | -8.615850e-47 |
| Msa0176370 | Msa0375930 | -0.806006 | 1.014251e-49 | -8.615850e-47 |
| Msa0176370 | Msa0378440 | -0.809493 | 1.841163e-50 | -8.615850e-47 |
| Msa0176370 | Msa0415760 | -0.805947 | 1.043905e-49 | -8.615850e-47 |
| Msa0176370 | Msa0424570 | -0.804742 | 1.866479e-49 | -8.615850e-47 |
| Msa0176370 | Msa0427890 | -0.818769 | 1.648778e-52 | -8.615850e-47 |
| Msa0176370 | Msa0437730 | -0.813183 | 2.911162e-51 | -8.615850e-47 |
| Msa0176370 | Msa0460510 | -0.811308 | 7.472033e-51 | -8.615850e-47 |
| Msa0176370 | Msa0474120 | -0.817672 | 2.920205e-52 | -8.615850e-47 |
| Msa0176370 | Msa0516000 | -0.801174 | 1.019661e-48 | -8.615850e-47 |
| Msa0176370 | Msa0526520 | -0.803557 | 3.292753e-49 | -8.615850e-47 |
| Msa0176370 | Msa0550980 | -0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0176370 | Msa0554770 | -0.825980 | 3.487432e-54 | -8.615850e-47 |
| Msa0176370 | Msa0556760 | -0.828643 | 8.019901e-55 | -8.615850e-47 |
| Msa0176370 | Msa0559440 | -0.847696 | 9.818817e-60 | -8.615850e-47 |
| Msa0176370 | Msa0559640 | -0.812491 | 4.128381e-51 | -8.615850e-47 |
| Msa0176370 | Msa0577960 | -0.809622 | 1.727830e-50 | -8.615850e-47 |
| Msa0176370 | Msa0582590 | -0.806249 | 9.017128e-50 | -8.615850e-47 |
| Msa0176370 | Msa0582870 | -0.809286 | 2.039989e-50 | -8.615850e-47 |
| Msa0176370 | Msa0588040 | 0.803830 | 2.890890e-49 | -8.615850e-47 |
| Msa0176370 | Msa0590620 | -0.823430 | 1.390751e-53 | -8.615850e-47 |
| Msa0176370 | Msa0608280 | -0.805492 | 1.300718e-49 | -8.615850e-47 |
| Msa0176370 | Msa0611450 | -0.801384 | 9.235714e-49 | -8.615850e-47 |
| Msa0176370 | Msa0622800 | -0.814173 | 1.763289e-51 | -8.615850e-47 |
| Msa0176370 | Msa0622930 | -0.802442 | 5.600489e-49 | -8.615850e-47 |
| Msa0176370 | Msa0625550 | -0.813428 | 2.572785e-51 | -8.615850e-47 |
| Msa0176370 | Msa0644340 | 0.804395 | 2.205200e-49 | -8.615850e-47 |
| Msa0176370 | Msa0654400 | -0.854774 | 9.841369e-62 | -8.615850e-47 |
| Msa0176370 | Msa0654500 | -0.852980 | 3.233072e-61 | -8.615850e-47 |
| Msa0176370 | Msa0656570 | -0.801306 | 9.580057e-49 | -8.615850e-47 |
| Msa0176370 | Msa0676570 | -0.809374 | 1.953309e-50 | -8.615850e-47 |
| Msa0176370 | Msa0685390 | -0.805610 | 1.228245e-49 | -8.615850e-47 |
| Msa0176370 | Msa0690100 | -0.811498 | 6.792784e-51 | -8.615850e-47 |
| Msa0176370 | Msa0701800 | -0.806020 | 1.007584e-49 | -8.615850e-47 |
| Msa0176370 | Msa0707870 | -0.819843 | 9.386284e-53 | -8.615850e-47 |
| Msa0176370 | Msa0708840 | -0.812171 | 4.849640e-51 | -8.615850e-47 |
| Msa0176370 | Msa0714230 | -0.802191 | 6.308150e-49 | -8.615850e-47 |
| Msa0176370 | Msa0742690 | -0.815497 | 8.968740e-52 | -8.615850e-47 |
| Msa0176370 | Msa0743370 | 0.811698 | 6.146021e-51 | -8.615850e-47 |
| Msa0176370 | Msa0779830 | -0.816418 | 5.587926e-52 | -8.615850e-47 |
| Msa0176370 | Msa0801320 | -0.808125 | 3.611418e-50 | -8.615850e-47 |
| Msa0176370 | Msa0814660 | 0.815734 | 7.941780e-52 | -8.615850e-47 |
| Msa0176370 | Msa0822680 | -0.800767 | 1.235193e-48 | -8.615850e-47 |
| Msa0176370 | Msa0826240 | 0.802095 | 6.599768e-49 | -8.615850e-47 |
| Msa0176370 | Msa0827560 | -0.821306 | 4.331529e-53 | -8.615850e-47 |
| Msa0176370 | Msa0829770 | -0.810702 | 1.010595e-50 | -8.615850e-47 |
| Msa0176370 | Msa0862750 | -0.816201 | 6.247451e-52 | -8.615850e-47 |
| Msa0176370 | Msa0865830 | 0.800387 | 1.475809e-48 | -8.615850e-47 |
| Msa0176370 | Msa0869320 | -0.805500 | 1.295797e-49 | -8.615850e-47 |
| Msa0176370 | Msa0879940 | -0.823236 | 1.543701e-53 | -8.615850e-47 |
| Msa0176370 | Msa0904590 | 0.800802 | 1.214672e-48 | -8.615850e-47 |
| Msa0176370 | Msa0919120 | -0.804119 | 2.516980e-49 | -8.615850e-47 |
| Msa0176370 | Msa0934290 | -0.802628 | 5.126278e-49 | -8.615850e-47 |
| Msa0176370 | Msa0937160 | -0.802220 | 6.221004e-49 | -8.615850e-47 |
| Msa0176370 | Msa0956580 | -0.824202 | 9.169066e-54 | -8.615850e-47 |
| Msa0176370 | Msa0956600 | -0.831543 | 1.573142e-55 | -8.615850e-47 |
| Msa0176370 | Msa0971780 | -0.804853 | 1.769243e-49 | -8.615850e-47 |
| Msa0176370 | Msa0973850 | 0.807187 | 5.713343e-50 | -8.615850e-47 |
| Msa0176370 | Msa1011140 | -0.869653 | 2.636253e-66 | -8.615850e-47 |
| Msa0176370 | Msa1016450 | -0.803509 | 3.369258e-49 | -8.615850e-47 |
| Msa0176370 | Msa1020490 | -0.808444 | 3.087719e-50 | -8.615850e-47 |
| Msa0176370 | Msa1039150 | -0.808857 | 2.519922e-50 | -8.615850e-47 |
| Msa0176370 | Msa1043660 | 0.813241 | 2.827158e-51 | -8.615850e-47 |
| Msa0176370 | Msa1057940 | -0.806475 | 8.079690e-50 | -8.615850e-47 |
| Msa0176370 | Msa1075090 | 0.804723 | 1.883858e-49 | -8.615850e-47 |
| Msa0176370 | Msa1086420 | -0.803881 | 2.821615e-49 | -8.615850e-47 |
| Msa0176370 | Msa1104020 | -0.817166 | 3.796674e-52 | -8.615850e-47 |
| Msa0176370 | Msa1123440 | -0.806913 | 6.530520e-50 | -8.615850e-47 |
| Msa0176370 | Msa1129470 | -0.804972 | 1.671047e-49 | -8.615850e-47 |
| Msa0176370 | Msa1144380 | -0.802953 | 4.392503e-49 | -8.615850e-47 |
| Msa0176370 | Msa1153680 | -0.815272 | 1.006540e-51 | -8.615850e-47 |
| Msa0176370 | Msa1162430 | 0.806790 | 6.933103e-50 | -8.615850e-47 |
| Msa0176370 | Msa1203090 | -0.800244 | 1.578552e-48 | -8.615850e-47 |
| Msa0176370 | Msa1219530 | -0.873626 | 1.270841e-67 | -8.615850e-47 |
| Msa0176370 | Msa1221520 | 0.800658 | 1.299889e-48 | -8.615850e-47 |
| Msa0176370 | Msa1264940 | 0.800701 | 1.273981e-48 | -8.615850e-47 |
| Msa0176370 | Msa1332340 | -0.818003 | 2.458748e-52 | -8.615850e-47 |
| Msa0176370 | Msa1333220 | -0.856388 | 3.327940e-62 | -8.615850e-47 |
| Msa0176370 | Msa1334000 | 0.800703 | 1.272473e-48 | -8.615850e-47 |
| Msa0176370 | Msa1360070 | -0.811852 | 5.689500e-51 | -8.615850e-47 |
| Msa0176370 | Msa1363310 | -0.801265 | 9.768050e-49 | -8.615850e-47 |
| Msa0176370 | Msa1374140 | 0.805338 | 1.400655e-49 | -8.615850e-47 |
| Msa0176370 | Msa1374210 | -0.807336 | 5.313141e-50 | -8.615850e-47 |
| Msa0176370 | Msa1375640 | 0.804386 | 2.214548e-49 | -8.615850e-47 |
| Msa0176370 | Msa1381300 | -0.800795 | 1.218514e-48 | -8.615850e-47 |
| Msa0176370 | Msa1382640 | 0.807934 | 3.965612e-50 | -8.615850e-47 |
| Msa0176370 | Msa1386180 | -0.802416 | 5.669509e-49 | -8.615850e-47 |
| Msa0176370 | Msa1386580 | -0.802841 | 4.633079e-49 | -8.615850e-47 |
| Msa0176370 | Msa1395200 | -0.815856 | 7.461188e-52 | -8.615850e-47 |
| Msa0176370 | Msa1397560 | -0.819735 | 9.934747e-53 | -8.615850e-47 |
| Msa0176370 | Msa1409360 | -0.874697 | 5.516626e-68 | -8.615850e-47 |
| Msa0176370 | Msa1422820 | -0.831992 | 1.218790e-55 | -8.615850e-47 |
| Msa0176370 | Msa1424490 | -0.804305 | 2.302262e-49 | -8.615850e-47 |
| Msa0176370 | Msa1426690 | -0.806448 | 8.186320e-50 | -8.615850e-47 |
| Msa0176370 | Msa1433060 | -0.825349 | 4.921574e-54 | -8.615850e-47 |
| Msa0176370 | Msa1452070 | -0.803574 | 3.267108e-49 | -8.615850e-47 |
| Msa0176370 | Msa1459130 | -0.812070 | 5.100391e-51 | -8.615850e-47 |
| Msa0176370 | Msa1461840 | -0.810350 | 1.204397e-50 | -8.615850e-47 |
| Msa0176370 | Msa1462210 | -0.809455 | 1.875872e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176370 | MtrunA17_Chr1g0198781 | 98.715 | 467 | 6 | 0 | 1 | 467 | 1 | 467 | 0.0 | 952 |
| Msa0176370 | MtrunA17_Chr4g0062731 | 66.667 | 468 | 145 | 4 | 8 | 467 | 1 | 465 | 0.0 | 637 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0176370 | AT1G68820.1 | 72.863 | 468 | 126 | 1 | 1 | 467 | 1 | 468 | 0.0 | 715 |
| Msa0176370 | AT1G68820.4 | 71.941 | 474 | 126 | 2 | 1 | 467 | 1 | 474 | 0.0 | 710 |
| Msa0176370 | AT1G68820.3 | 73.397 | 421 | 111 | 1 | 48 | 467 | 11 | 431 | 0.0 | 653 |
| Msa0176370 | AT1G73950.1 | 67.457 | 464 | 141 | 4 | 12 | 467 | 5 | 466 | 0.0 | 652 |
| Msa0176370 | AT1G68820.2 | 72.365 | 427 | 111 | 2 | 48 | 467 | 11 | 437 | 0.0 | 648 |
| Msa0176370 | AT1G18470.1 | 66.453 | 468 | 148 | 3 | 8 | 467 | 1 | 467 | 0.0 | 648 |
| Msa0176370 | AT1G73950.2 | 64.103 | 468 | 130 | 4 | 8 | 467 | 1 | 438 | 0.0 | 610 |
| Msa0176370 | AT1G18470.2 | 65.385 | 390 | 126 | 3 | 8 | 389 | 1 | 389 | 0.0 | 518 |
Find 120 sgRNAs with CRISPR-Local
Find 422 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGCAATGCACAGTTTA+AGG | 0.145323 | 1_4:+62727918 | None:intergenic |
| TGGGACTTGTTTATTAACTA+TGG | 0.220890 | 1_4:-62729931 | Msa0176370:CDS |
| GCGCAAAAGATATACCAATT+TGG | 0.258604 | 1_4:-62729451 | Msa0176370:CDS |
| TGCAGGTGATGTTGCTGCCC+TGG | 0.304003 | 1_4:-62729959 | Msa0176370:intron |
| TAGTGTAATTAATGTTTAAC+TGG | 0.307688 | 1_4:-62727571 | Msa0176370:three_prime_UTR |
| GATATAGATGAGTAGCTTCT+AGG | 0.308903 | 1_4:+62729326 | None:intergenic |
| GCAAAGAACGTGATGCTTGC+AGG | 0.316868 | 1_4:+62728298 | None:intergenic |
| CAAAATCCCGTGATTGCTTT+GGG | 0.323198 | 1_4:-62729301 | Msa0176370:CDS |
| CGCAAAAGATATACCAATTT+GGG | 0.323558 | 1_4:-62729450 | Msa0176370:CDS |
| GCAAGCATCACGTTCTTTGC+AGG | 0.327082 | 1_4:-62728295 | Msa0176370:intron |
| GCTTACCACATATCTTTAGA+AGG | 0.334804 | 1_4:+62730637 | None:intergenic |
| CTTCTTCTGTTGCAAGGAGC+TGG | 0.335527 | 1_4:-62729413 | Msa0176370:CDS |
| TCAAAATCCCGTGATTGCTT+TGG | 0.340689 | 1_4:-62729302 | Msa0176370:CDS |
| TGACCGTTTCCATGAATTGT+AGG | 0.347931 | 1_4:+62729771 | None:intergenic |
| ACTCCATTCTAGATATCTTA+TGG | 0.350126 | 1_4:+62729719 | None:intergenic |
| CTTCTTCTATGTATACATCT+TGG | 0.363964 | 1_4:-62732535 | Msa0176370:CDS |
| AGGAAACTTTGTTGAATGTT+TGG | 0.367014 | 1_4:-62727710 | Msa0176370:three_prime_UTR |
| GTGATGTTGCTGCCCTGGGC+TGG | 0.375144 | 1_4:-62729954 | Msa0176370:CDS |
| AAGTTTCCTTTGACTATCAT+AGG | 0.376479 | 1_4:+62727724 | None:intergenic |
| TCGATTGTCCCACGGCAGAT+AGG | 0.378930 | 1_4:+62728128 | None:intergenic |
| AGTCATAGCTACACCATTAC+TGG | 0.380264 | 1_4:-62732569 | Msa0176370:CDS |
| CTCTTGGCAGGTTGCTAGGT+TGG | 0.384100 | 1_4:-62729133 | Msa0176370:intron |
| CCTCCTCTTGGCAGGTTGCT+AGG | 0.384372 | 1_4:-62729137 | Msa0176370:intron |
| AAGAAGAGTGTGCGTGACTT+TGG | 0.386233 | 1_4:+62734525 | None:intergenic |
| CCTGCTCCTTCGATGCCTCA+TGG | 0.387713 | 1_4:-62732716 | Msa0176370:CDS |
| TGGCACAATCCTACAATTCA+TGG | 0.391098 | 1_4:-62729780 | Msa0176370:CDS |
| ATATGACAGATGAAGCAGTA+TGG | 0.394755 | 1_4:-62731518 | Msa0176370:CDS |
| TGCAGCAATGCACAGTTTAA+GGG | 0.396105 | 1_4:+62727919 | None:intergenic |
| TTCTTCTATGTATACATCTT+GGG | 0.402849 | 1_4:-62732534 | Msa0176370:CDS |
| GCAGGTGATGTTGCTGCCCT+GGG | 0.413418 | 1_4:-62729958 | Msa0176370:intron |
| ATGTTGCTGCCCTGGGCTGG+TGG | 0.415523 | 1_4:-62729951 | Msa0176370:CDS |
| CAGCTCCTTGCAACAGAAGA+AGG | 0.417091 | 1_4:+62729414 | None:intergenic |
| AAATTTCAGGGAACACCATC+GGG | 0.437322 | 1_4:-62729473 | Msa0176370:intron |
| TCTCCCCTTCTTCTGTTGCA+AGG | 0.441729 | 1_4:-62729419 | Msa0176370:CDS |
| AATGCTACCATGCGCAGTTA+AGG | 0.443239 | 1_4:-62727809 | Msa0176370:three_prime_UTR |
| CGATTGTCCCACGGCAGATA+GGG | 0.448802 | 1_4:+62728129 | None:intergenic |
| TCAGTCTACACATCATATAT+AGG | 0.450844 | 1_4:+62728095 | None:intergenic |
| CTGCTCCTTCGATGCCTCAT+GGG | 0.451611 | 1_4:-62732715 | Msa0176370:CDS |
| ATGTGTAGGGCTTTGATGCC+TGG | 0.452224 | 1_4:-62731552 | Msa0176370:CDS |
| CCATGAGGCATCGAAGGAGC+AGG | 0.459822 | 1_4:+62732716 | None:intergenic |
| ATACATCTTGGGAGCAGTTA+TGG | 0.460031 | 1_4:-62732523 | Msa0176370:intron |
| GGGACTTGTTTATTAACTAT+GGG | 0.474665 | 1_4:-62729930 | Msa0176370:intron |
| TAAACAAGTCCCACCAGCCC+AGG | 0.475470 | 1_4:+62729941 | None:intergenic |
| GAAGAGTAATGAGTTGGAGA+AGG | 0.480625 | 1_4:-62734361 | Msa0176370:CDS |
| ATACCATAAGATATCTAGAA+TGG | 0.482455 | 1_4:-62729722 | Msa0176370:CDS |
| TGTTGCTGCCCTGGGCTGGT+GGG | 0.485436 | 1_4:-62729950 | Msa0176370:CDS |
| TGGAGACTTCAAGCTGCACT+TGG | 0.490047 | 1_4:-62728687 | Msa0176370:CDS |
| AGCTCAAATGCCACCAGTAA+TGG | 0.490887 | 1_4:+62732556 | None:intergenic |
| GACTGAAGAGAGAGAAAGGT+TGG | 0.491854 | 1_4:+62734423 | None:intergenic |
| TTGGCAGGTTGCTAGGTTGG+TGG | 0.493004 | 1_4:-62729130 | Msa0176370:intron |
| TGTATCTTTATAGGATGTGT+AGG | 0.493067 | 1_4:-62731566 | Msa0176370:intron |
| GGCGTAAAACAGAAGACAAA+AGG | 0.494350 | 1_4:-62734591 | Msa0176370:five_prime_UTR |
| TGCAGTCTGCAGGATATTGG+CGG | 0.496698 | 1_4:-62729645 | Msa0176370:CDS |
| AAACTTACCACCATGAGAAA+AGG | 0.497898 | 1_4:+62734252 | None:intergenic |
| CAGAGACTGAAGAGAGAGAA+AGG | 0.498351 | 1_4:+62734419 | None:intergenic |
| GAACGTGATGCTTGCAGGGA+AGG | 0.500638 | 1_4:+62728303 | None:intergenic |
| AATGCACAGTTTAAGGGAGG+TGG | 0.501325 | 1_4:+62727925 | None:intergenic |
| ATGTTGTGATAGCACGAGGC+AGG | 0.506024 | 1_4:-62732748 | Msa0176370:CDS |
| AAGAGTAATGAGTTGGAGAA+GGG | 0.507658 | 1_4:-62734360 | Msa0176370:CDS |
| TAAATTTCAGGGAACACCAT+CGG | 0.510830 | 1_4:-62729474 | Msa0176370:intron |
| AGTATTTGGAAAGCAATGAA+TGG | 0.512298 | 1_4:+62729606 | None:intergenic |
| CTTTGTTGAATGTTTGGTTG+AGG | 0.512800 | 1_4:-62727704 | Msa0176370:three_prime_UTR |
| TGTTGAAGTCTATATGAACT+AGG | 0.513809 | 1_4:-62727832 | Msa0176370:three_prime_UTR |
| AGTGTGCGTGACTTTGGAAC+AGG | 0.517007 | 1_4:+62734531 | None:intergenic |
| CGTTTCTCGTTTGTACGAAG+TGG | 0.520515 | 1_4:-62729800 | Msa0176370:CDS |
| CTTCTGGATTTCAATATCCA+TGG | 0.527664 | 1_4:-62730688 | Msa0176370:CDS |
| ATGCACAGTTTAAGGGAGGT+GGG | 0.529734 | 1_4:+62727926 | None:intergenic |
| CAGTGAAGAAAATGCCTAGA+GGG | 0.530565 | 1_4:-62728886 | Msa0176370:CDS |
| ACCATGAGAAAAGGAAGAAA+CGG | 0.533548 | 1_4:+62734261 | None:intergenic |
| TATGACAGATGAAGCAGTAT+GGG | 0.534167 | 1_4:-62731517 | Msa0176370:CDS |
| AACGGTCAAGCTTGAGAACA+AGG | 0.536993 | 1_4:+62734279 | None:intergenic |
| GGCTTTGATGCCTGGAGATG+AGG | 0.541183 | 1_4:-62731544 | Msa0176370:CDS |
| TATCTAGAATGGAGTAGAGA+AGG | 0.544891 | 1_4:-62729711 | Msa0176370:CDS |
| TTCGAAGAAGAGTAATGAGT+TGG | 0.546671 | 1_4:-62734367 | Msa0176370:CDS |
| CAAAGAACGTGATGCTTGCA+GGG | 0.547285 | 1_4:+62728299 | None:intergenic |
| AGCTCCTTGCAACAGAAGAA+GGG | 0.551454 | 1_4:+62729415 | None:intergenic |
| GCCTAGAGGGGAACTTGTTG+AGG | 0.557281 | 1_4:-62728873 | Msa0176370:CDS |
| TGGCGCCCATGAGGCATCGA+AGG | 0.558574 | 1_4:+62732710 | None:intergenic |
| TAAATACCTATGATAGTCAA+AGG | 0.560157 | 1_4:-62727730 | Msa0176370:three_prime_UTR |
| TGCACAGTTTAAGGGAGGTG+GGG | 0.563118 | 1_4:+62727927 | None:intergenic |
| GTATCTTTATAGGATGTGTA+GGG | 0.565095 | 1_4:-62731565 | Msa0176370:intron |
| CTTACCACATATCTTTAGAA+GGG | 0.565443 | 1_4:+62730638 | None:intergenic |
| TCCTCAACAAGTTCCCCTCT+AGG | 0.570816 | 1_4:+62728872 | None:intergenic |
| AGGCATCGAAGGAGCAGGCA+AGG | 0.572051 | 1_4:+62732721 | None:intergenic |
| CGTGATGCTTGCAGGGAAGG+AGG | 0.577724 | 1_4:+62728306 | None:intergenic |
| TATTATCTCACAATGGCTTG+TGG | 0.578729 | 1_4:-62728051 | Msa0176370:three_prime_UTR |
| TATGAATCCTTAACTGCGCA+TGG | 0.578759 | 1_4:+62727802 | None:intergenic |
| AATCCTACAATTCATGGAAA+CGG | 0.579082 | 1_4:-62729774 | Msa0176370:CDS |
| TCACTTAATGCTGTTTGATG+TGG | 0.581126 | 1_4:-62727645 | Msa0176370:three_prime_UTR |
| AGAAGTTACAAAATACAGCC+AGG | 0.582877 | 1_4:-62728655 | Msa0176370:CDS |
| TCCGTTCTTCGATTGTCCCA+CGG | 0.584122 | 1_4:+62728120 | None:intergenic |
| TTCAGTCTCTGCGATTTCTG+CGG | 0.586409 | 1_4:-62734407 | Msa0176370:five_prime_UTR |
| TTCACCCTTCTAAAGATATG+TGG | 0.589957 | 1_4:-62730642 | Msa0176370:intron |
| GCCGTGGGACAATCGAAGAA+CGG | 0.593080 | 1_4:-62728121 | Msa0176370:CDS |
| AAGAAGTGCCCTATCTGCCG+TGG | 0.599671 | 1_4:-62728137 | Msa0176370:CDS |
| AATAGACGAAGGAAGTAGAG+AGG | 0.600543 | 1_4:-62729105 | Msa0176370:CDS |
| ATGGTATTTGACGACGAACA+TGG | 0.601503 | 1_4:+62729738 | None:intergenic |
| TGTCTTACTTGGCGCCCATG+AGG | 0.603836 | 1_4:+62732701 | None:intergenic |
| CTTTGAAGAGCAGATTAATG+TGG | 0.604053 | 1_4:-62728330 | Msa0176370:CDS |
| GAGAACAAGGAGAAGAGAGA+AGG | 0.607762 | 1_4:+62734292 | None:intergenic |
| AAACAAGTCCCACCAGCCCA+GGG | 0.610460 | 1_4:+62729942 | None:intergenic |
| TAGAGGGGAACTTGTTGAGG+AGG | 0.612556 | 1_4:-62728870 | Msa0176370:intron |
| GCTCCTTGCAACAGAAGAAG+GGG | 0.614147 | 1_4:+62729416 | None:intergenic |
| ATCAATTCAAAAGCGATGAG+AGG | 0.615437 | 1_4:+62732356 | None:intergenic |
| GTTCTTCTTCGCAACCTCCG+AGG | 0.629527 | 1_4:-62734498 | Msa0176370:five_prime_UTR |
| AGAAGTGCCCTATCTGCCGT+GGG | 0.634893 | 1_4:-62728136 | Msa0176370:CDS |
| AAACACGCGTATCTATGAAG+AGG | 0.635408 | 1_4:+62734462 | None:intergenic |
| GCAGATACATTAATCACACT+TGG | 0.637461 | 1_4:+62728010 | None:intergenic |
| AGCAATGCACAGTTTAAGGG+AGG | 0.659991 | 1_4:+62727922 | None:intergenic |
| AGTGAAGAAAATGCCTAGAG+GGG | 0.666791 | 1_4:-62728885 | Msa0176370:CDS |
| TTTCATGTTGTGATAGCACG+AGG | 0.668280 | 1_4:-62732752 | Msa0176370:CDS |
| GGCAGCAACAAAGAAGACCA+TGG | 0.675195 | 1_4:+62730671 | None:intergenic |
| CATAGCTACACCATTACTGG+TGG | 0.678507 | 1_4:-62732566 | Msa0176370:CDS |
| ATATACATATTATCTCACAA+TGG | 0.702702 | 1_4:-62728058 | Msa0176370:three_prime_UTR |
| GGTTGGTGGTCAATAGACGA+AGG | 0.703854 | 1_4:-62729116 | Msa0176370:CDS |
| ACAGTGAAGAAAATGCCTAG+AGG | 0.720684 | 1_4:-62728887 | Msa0176370:CDS |
| CTTTAGAAGGGTGAACACTG+TGG | 0.725837 | 1_4:+62730650 | None:intergenic |
| GATTCATATCGCTGTCACTG+AGG | 0.737002 | 1_4:-62727787 | Msa0176370:three_prime_UTR |
| AGTTACAAAATACAGCCAGG+AGG | 0.745954 | 1_4:-62728652 | Msa0176370:CDS |
| GTAGCTATGACTGAATGACA+AGG | 0.785500 | 1_4:+62732580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATAAAAAAAAATACTAT+TGG | - | chr1_4:62727570-62727589 | Msa0176370:three_prime_UTR | 10.0% |
| !!! | AAAAAAAAATACTATTGGTT+TGG | - | chr1_4:62727575-62727594 | Msa0176370:three_prime_UTR | 15.0% |
| !! | TATGAATATGATAATTCAAA+AGG | + | chr1_4:62728025-62728044 | None:intergenic | 15.0% |
| !!! | TTGTTAGATTAATTTTTGTT+TGG | - | chr1_4:62728241-62728260 | Msa0176370:intron | 15.0% |
| !!! | ATTAATTTTTGTTTGGAATA+GGG | - | chr1_4:62728248-62728267 | Msa0176370:intron | 15.0% |
| !!! | CTAATATGTTTTTTTATAAC+CGG | - | chr1_4:62728966-62728985 | Msa0176370:intron | 15.0% |
| !! | ATAAAATAAAAAGAAACTGT+TGG | - | chr1_4:62729094-62729113 | Msa0176370:CDS | 15.0% |
| !! | TAAAATAAAAAGAAACTGTT+GGG | - | chr1_4:62729095-62729114 | Msa0176370:CDS | 15.0% |
| !!! | TTTAGTACTATTTTGATTTT+TGG | - | chr1_4:62731298-62731317 | Msa0176370:intron | 15.0% |
| !! | GTTATGATTGAAATTTAATT+AGG | + | chr1_4:62732042-62732061 | None:intergenic | 15.0% |
| !! | AGAAAAACAAATTTATCTTT+AGG | - | chr1_4:62732952-62732971 | Msa0176370:intron | 15.0% |
| !!! | GATTAATTTTTGTTTGGAAT+AGG | - | chr1_4:62728247-62728266 | Msa0176370:intron | 20.0% |
| !! | TGTAATAAGATCTATAGATA+CGG | - | chr1_4:62728423-62728442 | Msa0176370:intron | 20.0% |
| !!! | TGATATAATGAACTTTGAAA+GGG | + | chr1_4:62729367-62729386 | None:intergenic | 20.0% |
| !! | ATGATATAATGAACTTTGAA+AGG | + | chr1_4:62729368-62729387 | None:intergenic | 20.0% |
| !!! | TATCATAGAATTTGAGATTA+GGG | + | chr1_4:62730290-62730309 | None:intergenic | 20.0% |
| !!! | TTATCATAGAATTTGAGATT+AGG | + | chr1_4:62730291-62730310 | None:intergenic | 20.0% |
| !! | TTCTATGATAAACTTTCAAT+AGG | - | chr1_4:62730300-62730319 | Msa0176370:intron | 20.0% |
| !! | GACAAAAAATGTATCTTTAT+AGG | - | chr1_4:62730612-62730631 | Msa0176370:intron | 20.0% |
| !!! | TTTATAATACTCTGTTTTGA+TGG | - | chr1_4:62730828-62730847 | Msa0176370:intron | 20.0% |
| !!! | ATTTTTTTTCAAAACCAAAC+AGG | + | chr1_4:62731015-62731034 | None:intergenic | 20.0% |
| !!! | ATGTGTTCTTATTTTAACTT+TGG | - | chr1_4:62731083-62731102 | Msa0176370:intron | 20.0% |
| !! | AATCAAAATAGTACTAAAGA+AGG | + | chr1_4:62731296-62731315 | None:intergenic | 20.0% |
| !! | AATTATTAAGATGTCACAAA+TGG | + | chr1_4:62731346-62731365 | None:intergenic | 20.0% |
| !! | ATTTGTGACATCTTAATAAT+TGG | - | chr1_4:62731345-62731364 | Msa0176370:intron | 20.0% |
| !! | AAATACTTGAAAATTTGTCT+TGG | + | chr1_4:62731395-62731414 | None:intergenic | 20.0% |
| !! | AATAAATACGAAGTTTATCA+AGG | + | chr1_4:62731788-62731807 | None:intergenic | 20.0% |
| !!! | TATGAAACTTAGATTTTGAT+TGG | - | chr1_4:62731820-62731839 | Msa0176370:intron | 20.0% |
| !!! | ATGAAACTTAGATTTTGATT+GGG | - | chr1_4:62731821-62731840 | Msa0176370:intron | 20.0% |
| !! | TAATAATGATTGCAAAAGAT+GGG | - | chr1_4:62731854-62731873 | Msa0176370:intron | 20.0% |
| !! | AATGAATCATATCAAAGTAA+CGG | + | chr1_4:62732115-62732134 | None:intergenic | 20.0% |
| !! | AATGCATAAAAAGTAGTATT+TGG | + | chr1_4:62732598-62732617 | None:intergenic | 20.0% |
| !! | AAATTTAAACAACCAAAATG+AGG | + | chr1_4:62732700-62732719 | None:intergenic | 20.0% |
| !!! | ATTTTGGTTGTTTAAATTTC+AGG | - | chr1_4:62732701-62732720 | Msa0176370:intron | 20.0% |
| !!! | TTTTGGTTGTTTAAATTTCA+GGG | - | chr1_4:62732702-62732721 | Msa0176370:intron | 20.0% |
| !!! | ATACCATTTTTAGTATAATG+AGG | - | chr1_4:62733160-62733179 | Msa0176370:intron | 20.0% |
| !! | TATCCTCATTATACTAAAAA+TGG | + | chr1_4:62733166-62733185 | None:intergenic | 20.0% |
| !!! | TGCGATTTGATTTATTATTT+AGG | - | chr1_4:62733256-62733275 | Msa0176370:intron | 20.0% |
| !! | CTATTAAGTAAGAAATAACA+TGG | + | chr1_4:62733380-62733399 | None:intergenic | 20.0% |
| !!! | AGTTTAACTTATTCTTAATG+AGG | + | chr1_4:62733406-62733425 | None:intergenic | 20.0% |
| !! | AATTGATCACTAAATATATC+AGG | - | chr1_4:62733812-62733831 | Msa0176370:intron | 20.0% |
| !! | ATATACATATTATCTCACAA+TGG | - | chr1_4:62734129-62734148 | Msa0176370:intron | 20.0% |
| !! | TAGTGTAATTAATGTTTAAC+TGG | - | chr1_4:62734616-62734635 | Msa0176370:five_prime_UTR | 20.0% |
| !!! | GTTTCTAGATTTTTGATCAA+GGG | + | chr1_4:62727975-62727994 | None:intergenic | 25.0% |
| ! | CTTGATCAAAAATCTAGAAA+CGG | - | chr1_4:62727974-62727993 | Msa0176370:three_prime_UTR | 25.0% |
| !!! | AAAATCTAGAAACGGATTAA+AGG | - | chr1_4:62727982-62728001 | Msa0176370:three_prime_UTR | 25.0% |
| !!! | AAATCTAGAAACGGATTAAA+GGG | - | chr1_4:62727983-62728002 | Msa0176370:three_prime_UTR | 25.0% |
| !!! | AATTTTGAAGAAAATGATGC+TGG | - | chr1_4:62728156-62728175 | Msa0176370:CDS | 25.0% |
| !!! | ATTTTGAAGAAAATGATGCT+GGG | - | chr1_4:62728157-62728176 | Msa0176370:CDS | 25.0% |
| !! | AATTTGTTTGATTAGGGAAT+GGG | - | chr1_4:62728338-62728357 | Msa0176370:CDS | 25.0% |
| ! | GTAATAAGATCTATAGATAC+GGG | - | chr1_4:62728424-62728443 | Msa0176370:intron | 25.0% |
| ! | TAATAAGATCTATAGATACG+GGG | - | chr1_4:62728425-62728444 | Msa0176370:intron | 25.0% |
| ! | CTTACAATCTAAACACAAAT+TGG | + | chr1_4:62728943-62728962 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTATAACCGGATT+TGG | - | chr1_4:62728972-62728991 | Msa0176370:intron | 25.0% |
| ! | AAATTGAGATGTATCAGTAT+GGG | - | chr1_4:62729136-62729155 | Msa0176370:intron | 25.0% |
| !! | ATTTAAGACATGATTTGAAC+TGG | + | chr1_4:62729261-62729280 | None:intergenic | 25.0% |
| ! | ATCATGTCTTAAATATCGAT+AGG | - | chr1_4:62729267-62729286 | Msa0176370:intron | 25.0% |
| !! | TCATAACATATCTTCCTTTT+TGG | - | chr1_4:62729384-62729403 | Msa0176370:CDS | 25.0% |
| ! | TTCTTCTATGTATACATCTT+GGG | - | chr1_4:62729653-62729672 | Msa0176370:CDS | 25.0% |
| ! | GTAACATATCTTATGACTTA+TGG | - | chr1_4:62729690-62729709 | Msa0176370:CDS | 25.0% |
| ! | AGCATATAGAATATAAAGCT+TGG | + | chr1_4:62729906-62729925 | None:intergenic | 25.0% |
| ! | TATCGTCTGTTAATTTAGAT+CGG | + | chr1_4:62730047-62730066 | None:intergenic | 25.0% |
| ! | TTGGAACTGTCTTAAAAAAT+TGG | - | chr1_4:62730375-62730394 | Msa0176370:intron | 25.0% |
| ! | TTCATAATGTTGAATGAATG+TGG | + | chr1_4:62730412-62730431 | None:intergenic | 25.0% |
| ! | GCTTGTAATAGTTAATTGTA+AGG | - | chr1_4:62730500-62730519 | Msa0176370:intron | 25.0% |
| ! | TAATCAATTATAAAGCTGCA+AGG | - | chr1_4:62730546-62730565 | Msa0176370:intron | 25.0% |
| ! | TATATACTCTTCTATCAAAC+TGG | - | chr1_4:62730580-62730599 | Msa0176370:intron | 25.0% |
| ! | ATATACTCTTCTATCAAACT+GGG | - | chr1_4:62730581-62730600 | Msa0176370:intron | 25.0% |
| ! | ACTAATGAATGATATCTTAC+AGG | + | chr1_4:62730704-62730723 | None:intergenic | 25.0% |
| !!! | TATGCTCTGAAATTGAATAA+AGG | - | chr1_4:62730746-62730765 | Msa0176370:intron | 25.0% |
| !!! | GTATTTTTTGTTCAAATCTC+TGG | - | chr1_4:62730858-62730877 | Msa0176370:intron | 25.0% |
| ! | ACTATTGTCTAAATCATACA+CGG | + | chr1_4:62730952-62730971 | None:intergenic | 25.0% |
| ! | AGACAATAGTTAATCTTTGT+TGG | - | chr1_4:62730962-62730981 | Msa0176370:intron | 25.0% |
| ! | ACATTAGTGATTAGAGTTTA+AGG | - | chr1_4:62730988-62731007 | Msa0176370:intron | 25.0% |
| ! | AAGGATAAAACAGAGAATTA+AGG | + | chr1_4:62731277-62731296 | None:intergenic | 25.0% |
| !!! | TTGGTAAGTATTGAATAGTA+AGG | + | chr1_4:62731376-62731395 | None:intergenic | 25.0% |
| ! | CAAATTTAGTAATGAGCATT+GGG | + | chr1_4:62731454-62731473 | None:intergenic | 25.0% |
| ! | TCAAATTTAGTAATGAGCAT+TGG | + | chr1_4:62731455-62731474 | None:intergenic | 25.0% |
| ! | GTTTGTAATACACTATTCTT+TGG | - | chr1_4:62731762-62731781 | Msa0176370:intron | 25.0% |
| !!! | TGAAACTTAGATTTTGATTG+GGG | - | chr1_4:62731822-62731841 | Msa0176370:intron | 25.0% |
| !! | CTTTTGCAATCATTATTAGA+AGG | + | chr1_4:62731852-62731871 | None:intergenic | 25.0% |
| ! | CTAATAATGATTGCAAAAGA+TGG | - | chr1_4:62731853-62731872 | Msa0176370:intron | 25.0% |
| ! | GATTATGATAAAAACAGTGA+CGG | + | chr1_4:62732064-62732083 | None:intergenic | 25.0% |
| !!! | CTGTTTTTATCATAATCTGA+TGG | - | chr1_4:62732067-62732086 | Msa0176370:intron | 25.0% |
| ! | TGCTGCAAAAAAGATAAAAT+GGG | + | chr1_4:62732352-62732371 | None:intergenic | 25.0% |
| ! | ATGCTGCAAAAAAGATAAAA+TGG | + | chr1_4:62732353-62732372 | None:intergenic | 25.0% |
| ! | ATACCATAAGATATCTAGAA+TGG | - | chr1_4:62732465-62732484 | Msa0176370:intron | 25.0% |
| !!! | ACTACTTTTTATGCATTTAG+AGG | - | chr1_4:62732601-62732620 | Msa0176370:intron | 25.0% |
| ! | GGAAAGAAAATCAAAGAATA+AGG | + | chr1_4:62732679-62732698 | None:intergenic | 25.0% |
| !! | TTGATTTTCTTTCCTCATTT+TGG | - | chr1_4:62732685-62732704 | Msa0176370:intron | 25.0% |
| !! | ACTGTTCTTTTACTCTATAA+TGG | - | chr1_4:62732831-62732850 | Msa0176370:intron | 25.0% |
| !!! | AAGTTATGCGTTATTTTTAC+TGG | - | chr1_4:62733199-62733218 | Msa0176370:intron | 25.0% |
| ! | TAGCTACATATTCTGATATA+AGG | + | chr1_4:62733357-62733376 | None:intergenic | 25.0% |
| ! | ACATAATGCATTTCAATAAC+CGG | - | chr1_4:62733456-62733475 | Msa0176370:intron | 25.0% |
| ! | TATTAACTGATATGCAATCA+AGG | + | chr1_4:62733594-62733613 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTTTGTTGCCTT+TGG | - | chr1_4:62733985-62734004 | Msa0176370:intron | 25.0% |
| ! | TAAATACCTATGATAGTCAA+AGG | - | chr1_4:62734457-62734476 | Msa0176370:five_prime_UTR | 25.0% |
| !! | CGTTTCTAGATTTTTGATCA+AGG | + | chr1_4:62727976-62727995 | None:intergenic | 30.0% |
| CAGAATTTCAGGATAAAACT+AGG | + | chr1_4:62728048-62728067 | None:intergenic | 30.0% | |
| !!! | TTTGTGCTGTTGATGATTTT+TGG | - | chr1_4:62728072-62728091 | Msa0176370:three_prime_UTR | 30.0% |
| ! | TGGAGAGAATTTGTTTGATT+AGG | - | chr1_4:62728331-62728350 | Msa0176370:CDS | 30.0% |
| ! | GGAGAGAATTTGTTTGATTA+GGG | - | chr1_4:62728332-62728351 | Msa0176370:CDS | 30.0% |
| ! | GAATTTGTTTGATTAGGGAA+TGG | - | chr1_4:62728337-62728356 | Msa0176370:CDS | 30.0% |
| AATAAGATCTATAGATACGG+GGG | - | chr1_4:62728426-62728445 | Msa0176370:intron | 30.0% | |
| GCAAAAAAGTAGAGTTAGAA+AGG | - | chr1_4:62728540-62728559 | Msa0176370:intron | 30.0% | |
| TATTTCATAGCACACCAAAA+TGG | + | chr1_4:62728734-62728753 | None:intergenic | 30.0% | |
| !! | TTTTGGTGTGCTATGAAATA+TGG | - | chr1_4:62728734-62728753 | Msa0176370:intron | 30.0% |
| !!! | TTTTTGTTTTCACCTTTCTG+AGG | - | chr1_4:62728772-62728791 | Msa0176370:intron | 30.0% |
| ! | ATCTCAATTTGGTTTATGTC+TGG | + | chr1_4:62729126-62729145 | None:intergenic | 30.0% |
| CATACTGATACATCTCAATT+TGG | + | chr1_4:62729137-62729156 | None:intergenic | 30.0% | |
| CAAATTGAGATGTATCAGTA+TGG | - | chr1_4:62729135-62729154 | Msa0176370:intron | 30.0% | |
| AATTTACATGGAACAGTCAA+AGG | + | chr1_4:62729230-62729249 | None:intergenic | 30.0% | |
| TTGACTGTTCCATGTAAATT+AGG | - | chr1_4:62729230-62729249 | Msa0176370:intron | 30.0% | |
| TGACTGTTCCATGTAAATTA+GGG | - | chr1_4:62729231-62729250 | Msa0176370:intron | 30.0% | |
| ATGTCTTAAATATCGATAGG+TGG | - | chr1_4:62729270-62729289 | Msa0176370:intron | 30.0% | |
| TGTCTTAAATATCGATAGGT+GGG | - | chr1_4:62729271-62729290 | Msa0176370:intron | 30.0% | |
| GAATCTCAGATTGTAGATTA+CGG | - | chr1_4:62729307-62729326 | Msa0176370:CDS | 30.0% | |
| ! | AATTTGAAGTGTGTCTTACT+TGG | + | chr1_4:62729500-62729519 | None:intergenic | 30.0% |
| !!! | CAAATTTTTTGTCCTGTAGA+AGG | - | chr1_4:62729539-62729558 | Msa0176370:intron | 30.0% |
| CTTCTTCTATGTATACATCT+TGG | - | chr1_4:62729652-62729671 | Msa0176370:CDS | 30.0% | |
| !!! | TGATTGTTTTAATGATGCAG+TGG | - | chr1_4:62729785-62729804 | Msa0176370:CDS | 30.0% |
| !!! | TGATTTTGATTGACAACATC+AGG | - | chr1_4:62729853-62729872 | Msa0176370:intron | 30.0% |
| AAAGCTTGGTAAGCTATAAA+TGG | + | chr1_4:62729892-62729911 | None:intergenic | 30.0% | |
| GCTGTTCAATCTCAAATTAA+CGG | - | chr1_4:62730108-62730127 | Msa0176370:intron | 30.0% | |
| TCCAACAGATATTACAAGAT+GGG | + | chr1_4:62730360-62730379 | None:intergenic | 30.0% | |
| TTCCAACAGATATTACAAGA+TGG | + | chr1_4:62730361-62730380 | None:intergenic | 30.0% | |
| TATACTCTTCTATCAAACTG+GGG | - | chr1_4:62730582-62730601 | Msa0176370:intron | 30.0% | |
| TGTATCTTTATAGGATGTGT+AGG | - | chr1_4:62730621-62730640 | Msa0176370:intron | 30.0% | |
| GTATCTTTATAGGATGTGTA+GGG | - | chr1_4:62730622-62730641 | Msa0176370:intron | 30.0% | |
| GCAAGACTTAATTTAGTACA+TGG | - | chr1_4:62731880-62731899 | Msa0176370:intron | 30.0% | |
| TAGTACATGGTTATCTGTTT+AGG | - | chr1_4:62731893-62731912 | Msa0176370:intron | 30.0% | |
| AGTACATGGTTATCTGTTTA+GGG | - | chr1_4:62731894-62731913 | Msa0176370:intron | 30.0% | |
| AAAGTAAACCTTGATCACAT+TGG | - | chr1_4:62731940-62731959 | Msa0176370:intron | 30.0% | |
| GTTTAGCTATCCCATAAAAA+AGG | - | chr1_4:62731962-62731981 | Msa0176370:intron | 30.0% | |
| !!! | AGCAGTGTATCCTTTTTTAT+GGG | + | chr1_4:62731975-62731994 | None:intergenic | 30.0% |
| ATAATTTCTCAATTACCTGC+AGG | - | chr1_4:62732211-62732230 | Msa0176370:intron | 30.0% | |
| ! | TGGGACTTGTTTATTAACTA+TGG | - | chr1_4:62732256-62732275 | Msa0176370:intron | 30.0% |
| ! | GGGACTTGTTTATTAACTAT+GGG | - | chr1_4:62732257-62732276 | Msa0176370:intron | 30.0% |
| AATCCTACAATTCATGGAAA+CGG | - | chr1_4:62732413-62732432 | Msa0176370:intron | 30.0% | |
| ACTCCATTCTAGATATCTTA+TGG | + | chr1_4:62732471-62732490 | None:intergenic | 30.0% | |
| AGTATTTGGAAAGCAATGAA+TGG | + | chr1_4:62732584-62732603 | None:intergenic | 30.0% | |
| CGCAAAAGATATACCAATTT+GGG | - | chr1_4:62732737-62732756 | Msa0176370:CDS | 30.0% | |
| GGAGAAAAAATTACCCAAAT+TGG | + | chr1_4:62732753-62732772 | None:intergenic | 30.0% | |
| AACAACGTTCAAGAATTTCT+AGG | + | chr1_4:62732996-62733015 | None:intergenic | 30.0% | |
| AACTGACATGAAGAATTTGT+CGG | - | chr1_4:62733017-62733036 | Msa0176370:intron | 30.0% | |
| ! | TCTTTTATAACTCGCAGATT+TGG | - | chr1_4:62733480-62733499 | Msa0176370:intron | 30.0% |
| GCAATTCTTAGCAGTTAAAA+TGG | - | chr1_4:62733683-62733702 | Msa0176370:intron | 30.0% | |
| TAGCATTCTTGTTAGTTAGA+AGG | - | chr1_4:62733726-62733745 | Msa0176370:intron | 30.0% | |
| TCAGTCTACACATCATATAT+AGG | + | chr1_4:62734095-62734114 | None:intergenic | 30.0% | |
| ! | CAATATTGAAAGCTCGTTTT+TGG | - | chr1_4:62734289-62734308 | Msa0176370:CDS | 30.0% |
| TGTTGAAGTCTATATGAACT+AGG | - | chr1_4:62734355-62734374 | Msa0176370:CDS | 30.0% | |
| AAGTTTCCTTTGACTATCAT+AGG | + | chr1_4:62734466-62734485 | None:intergenic | 30.0% | |
| AGGAAACTTTGTTGAATGTT+TGG | - | chr1_4:62734477-62734496 | Msa0176370:five_prime_UTR | 30.0% | |
| GAGGATGAATGAAAAATCCT+CGG | + | chr1_4:62727709-62727728 | None:intergenic | 35.0% | |
| TTCGAAGAAGAGTAATGAGT+TGG | - | chr1_4:62727820-62727839 | Msa0176370:three_prime_UTR | 35.0% | |
| ! | AAGAGTAATGAGTTGGAGAA+GGG | - | chr1_4:62727827-62727846 | Msa0176370:three_prime_UTR | 35.0% |
| ACCATGAGAAAAGGAAGAAA+CGG | + | chr1_4:62727929-62727948 | None:intergenic | 35.0% | |
| AAACTTACCACCATGAGAAA+AGG | + | chr1_4:62727938-62727957 | None:intergenic | 35.0% | |
| ! | CTAGATTTTTGATCAAGGGT+TGG | + | chr1_4:62727971-62727990 | None:intergenic | 35.0% |
| GCACAAAAACTCAGAATTTC+AGG | + | chr1_4:62728059-62728078 | None:intergenic | 35.0% | |
| GGACACAAATACAACACAAA+GGG | + | chr1_4:62728297-62728316 | None:intergenic | 35.0% | |
| AGGACACAAATACAACACAA+AGG | + | chr1_4:62728298-62728317 | None:intergenic | 35.0% | |
| TTACTCTAGTTGCAAAGCTA+CGG | + | chr1_4:62728508-62728527 | None:intergenic | 35.0% | |
| AACTAGAGTAACTTCACAGA+TGG | - | chr1_4:62728517-62728536 | Msa0176370:intron | 35.0% | |
| ACTAGAGTAACTTCACAGAT+GGG | - | chr1_4:62728518-62728537 | Msa0176370:intron | 35.0% | |
| TAGAGTTAGAAAGGAGCTTT+GGG | - | chr1_4:62728549-62728568 | Msa0176370:intron | 35.0% | |
| ACTAAACTAAGACACCAGAT+TGG | - | chr1_4:62728578-62728597 | Msa0176370:intron | 35.0% | |
| TTGTTGAGAATGTGTCTAGT+TGG | - | chr1_4:62728880-62728899 | Msa0176370:CDS | 35.0% | |
| TGCAACAGAATATAAACAGC+AGG | + | chr1_4:62729191-62729210 | None:intergenic | 35.0% | |
| AACAGTCAAAGGTTTATGTC+TGG | + | chr1_4:62729219-62729238 | None:intergenic | 35.0% | |
| GACTGTTCCATGTAAATTAG+GGG | - | chr1_4:62729232-62729251 | Msa0176370:intron | 35.0% | |
| GTCTTAAATATCGATAGGTG+GGG | - | chr1_4:62729272-62729291 | Msa0176370:intron | 35.0% | |
| TCTTAAATATCGATAGGTGG+GGG | - | chr1_4:62729273-62729292 | Msa0176370:intron | 35.0% | |
| !! | AACATATCTTCCTTTTTGGC+AGG | - | chr1_4:62729388-62729407 | Msa0176370:CDS | 35.0% |
| AAAATACAGTCCTGCCAAAA+AGG | + | chr1_4:62729401-62729420 | None:intergenic | 35.0% | |
| !! | GGACTGTATTTTTACCTCTT+TGG | - | chr1_4:62729409-62729428 | Msa0176370:CDS | 35.0% |
| ACAACATGAAAAAGCCAAAG+AGG | + | chr1_4:62729426-62729445 | None:intergenic | 35.0% | |
| AAATTGTCTTCTCTGTTTCG+TGG | - | chr1_4:62729515-62729534 | Msa0176370:intron | 35.0% | |
| ATCAATTCAAAAGCGATGAG+AGG | + | chr1_4:62729834-62729853 | None:intergenic | 35.0% | |
| ! | CATTGCACAGTTTTCAATGT+TGG | - | chr1_4:62730017-62730036 | Msa0176370:intron | 35.0% |
| GTCTGTTAATTTAGATCGGA+CGG | + | chr1_4:62730043-62730062 | None:intergenic | 35.0% | |
| TGACATGAGTAGTGCTTATA+AGG | - | chr1_4:62730215-62730234 | Msa0176370:intron | 35.0% | |
| GAGTAGTGCTTATAAGGTTT+CGG | - | chr1_4:62730221-62730240 | Msa0176370:intron | 35.0% | |
| GATAAACTTTCAATAGGAGC+TGG | - | chr1_4:62730306-62730325 | Msa0176370:intron | 35.0% | |
| CAACAGATATTACAAGATGG+GGG | + | chr1_4:62730358-62730377 | None:intergenic | 35.0% | |
| CCAACAGATATTACAAGATG+GGG | + | chr1_4:62730359-62730378 | None:intergenic | 35.0% | |
| ATATGACAGATGAAGCAGTA+TGG | - | chr1_4:62730669-62730688 | Msa0176370:CDS | 35.0% | |
| TATGACAGATGAAGCAGTAT+GGG | - | chr1_4:62730670-62730689 | Msa0176370:CDS | 35.0% | |
| !! | CTATTTCAGGAGTATCACTT+AGG | + | chr1_4:62730774-62730793 | None:intergenic | 35.0% |
| CTAAGTGATACTCCTGAAAT+AGG | - | chr1_4:62730772-62730791 | Msa0176370:intron | 35.0% | |
| ! | TAGATGTCAGATAGGGTATT+CGG | + | chr1_4:62730800-62730819 | None:intergenic | 35.0% |
| TTAGAGTTTAAGGACCTGTT+TGG | - | chr1_4:62730998-62731017 | Msa0176370:intron | 35.0% | |
| GTTTCTAATGTGTACAGGAA+AGG | + | chr1_4:62731166-62731185 | None:intergenic | 35.0% | |
| ! | TTCGTGTTTCTAATGTGTAC+AGG | + | chr1_4:62731171-62731190 | None:intergenic | 35.0% |
| !! | ACAAATGGTTCTGACATAAC+AGG | + | chr1_4:62731331-62731350 | None:intergenic | 35.0% |
| GGGAAAATAGAAAAGCAAGA+TGG | + | chr1_4:62731434-62731453 | None:intergenic | 35.0% | |
| !! | ATTCTGTTTTTCAGCACTTC+TGG | - | chr1_4:62731483-62731502 | Msa0176370:intron | 35.0% |
| CTTCTGGATTTCAATATCCA+TGG | - | chr1_4:62731499-62731518 | Msa0176370:intron | 35.0% | |
| AGTCAACAATTGTTTCAGAG+AGG | + | chr1_4:62731584-62731603 | None:intergenic | 35.0% | |
| TAGCTAAACCAATGTGATCA+AGG | + | chr1_4:62731951-62731970 | None:intergenic | 35.0% | |
| !!! | CAGCAGTGTATCCTTTTTTA+TGG | + | chr1_4:62731976-62731995 | None:intergenic | 35.0% |
| ! | TATCTAGAATGGAGTAGAGA+AGG | - | chr1_4:62732476-62732495 | Msa0176370:intron | 35.0% |
| TAAATTTCAGGGAACACCAT+CGG | - | chr1_4:62732713-62732732 | Msa0176370:CDS | 35.0% | |
| GCGCAAAAGATATACCAATT+TGG | - | chr1_4:62732736-62732755 | Msa0176370:CDS | 35.0% | |
| GATATAGATGAGTAGCTTCT+AGG | + | chr1_4:62732864-62732883 | None:intergenic | 35.0% | |
| TGAAAAACCCAAAGCAATCA+CGG | + | chr1_4:62732896-62732915 | None:intergenic | 35.0% | |
| !! | TGCTTTGGGTTTTTCAATCA+CGG | - | chr1_4:62732900-62732919 | Msa0176370:intron | 35.0% |
| ! | AGGCATTTTCTTCACTGTAT+CGG | + | chr1_4:62733298-62733317 | None:intergenic | 35.0% |
| AGAAGTTACAAAATACAGCC+AGG | - | chr1_4:62733532-62733551 | Msa0176370:intron | 35.0% | |
| ! | GAAGTTTTTCATATTCCTCC+TGG | + | chr1_4:62733553-62733572 | None:intergenic | 35.0% |
| ! | CTTTGAAGAGCAGATTAATG+TGG | - | chr1_4:62733857-62733876 | Msa0176370:intron | 35.0% |
| TATTATCTCACAATGGCTTG+TGG | - | chr1_4:62734136-62734155 | Msa0176370:intron | 35.0% | |
| GCAGATACATTAATCACACT+TGG | + | chr1_4:62734180-62734199 | None:intergenic | 35.0% | |
| CTTTGTTGAATGTTTGGTTG+AGG | - | chr1_4:62734483-62734502 | Msa0176370:five_prime_UTR | 35.0% | |
| ! | TCACTTAATGCTGTTTGATG+TGG | - | chr1_4:62734542-62734561 | Msa0176370:five_prime_UTR | 35.0% |
| GGCGTAAAACAGAAGACAAA+AGG | - | chr1_4:62727596-62727615 | Msa0176370:three_prime_UTR | 40.0% | |
| GATGAATGAAAAATCCTCGG+AGG | + | chr1_4:62727706-62727725 | None:intergenic | 40.0% | |
| AAACACGCGTATCTATGAAG+AGG | + | chr1_4:62727728-62727747 | None:intergenic | 40.0% | |
| ! | GAAGAGTAATGAGTTGGAGA+AGG | - | chr1_4:62727826-62727845 | Msa0176370:three_prime_UTR | 40.0% |
| ! | ACCGTTTCTTCCTTTTCTCA+TGG | - | chr1_4:62727925-62727944 | Msa0176370:three_prime_UTR | 40.0% |
| ! | GTTTCTTCCTTTTCTCATGG+TGG | - | chr1_4:62727928-62727947 | Msa0176370:three_prime_UTR | 40.0% |
| TTGACACATGCATTGAAAGG+GGG | + | chr1_4:62728112-62728131 | None:intergenic | 40.0% | |
| CTTGACACATGCATTGAAAG+GGG | + | chr1_4:62728113-62728132 | None:intergenic | 40.0% | |
| CCTTGACACATGCATTGAAA+GGG | + | chr1_4:62728114-62728133 | None:intergenic | 40.0% | |
| ! | TTTGGAATAGGGACTCTGTA+AGG | - | chr1_4:62728259-62728278 | Msa0176370:intron | 40.0% |
| TTGGAATAGGGACTCTGTAA+GGG | - | chr1_4:62728260-62728279 | Msa0176370:intron | 40.0% | |
| GTGTCCTAGTGTAGTGAAAT+TGG | - | chr1_4:62728311-62728330 | Msa0176370:CDS | 40.0% | |
| CTCTCCAATTTCACTACACT+AGG | + | chr1_4:62728318-62728337 | None:intergenic | 40.0% | |
| GTAGAGTTAGAAAGGAGCTT+TGG | - | chr1_4:62728548-62728567 | Msa0176370:intron | 40.0% | |
| ! | AGTGGACATTTTCTCCAATC+TGG | + | chr1_4:62728595-62728614 | None:intergenic | 40.0% |
| AGCAGATGCACAAAATACAG+TGG | - | chr1_4:62728625-62728644 | Msa0176370:intron | 40.0% | |
| !! | TTTTCCTTTGGCTTATGCGT+CGG | + | chr1_4:62728665-62728684 | None:intergenic | 40.0% |
| GATAAGTAGTCCATCCCTAA+CGG | + | chr1_4:62729000-62729019 | None:intergenic | 40.0% | |
| !! | TTAGGGATGGACTACTTATC+CGG | - | chr1_4:62729000-62729019 | Msa0176370:intron | 40.0% |
| TCTTCCATACGTCTTACCTA+GGG | + | chr1_4:62729039-62729058 | None:intergenic | 40.0% | |
| !! | AGAGATACCAGAGAAGTATC+TGG | - | chr1_4:62729056-62729075 | Msa0176370:intron | 40.0% |
| !! | GAGATACCAGAGAAGTATCT+GGG | - | chr1_4:62729057-62729076 | Msa0176370:intron | 40.0% |
| AAAAGTCCCAGATACTTCTC+TGG | + | chr1_4:62729066-62729085 | None:intergenic | 40.0% | |
| TTTCATGTTGTGATAGCACG+AGG | - | chr1_4:62729435-62729454 | Msa0176370:CDS | 40.0% | |
| CAGCAACAAAAACCTTCTAC+AGG | + | chr1_4:62729554-62729573 | None:intergenic | 40.0% | |
| ! | CTATTTTGTTCACGTGCAGT+GGG | - | chr1_4:62729582-62729601 | Msa0176370:intron | 40.0% |
| GTAGCTATGACTGAATGACA+AGG | + | chr1_4:62729610-62729629 | None:intergenic | 40.0% | |
| AGTCATAGCTACACCATTAC+TGG | - | chr1_4:62729618-62729637 | Msa0176370:CDS | 40.0% | |
| ATACATCTTGGGAGCAGTTA+TGG | - | chr1_4:62729664-62729683 | Msa0176370:CDS | 40.0% | |
| GACTTATGGCACAACTATCA+TGG | - | chr1_4:62729704-62729723 | Msa0176370:CDS | 40.0% | |
| CTTCAAATCTGCCTAAACTG+TGG | - | chr1_4:62729924-62729943 | Msa0176370:intron | 40.0% | |
| TGCCACATTTAAGGAGTCTA+GGG | + | chr1_4:62729955-62729974 | None:intergenic | 40.0% | |
| TTGCCACATTTAAGGAGTCT+AGG | + | chr1_4:62729956-62729975 | None:intergenic | 40.0% | |
| CTCCTTAAATGTGGCAACTT+TGG | - | chr1_4:62729959-62729978 | Msa0176370:intron | 40.0% | |
| GTCCAAAGTTGCCACATTTA+AGG | + | chr1_4:62729964-62729983 | None:intergenic | 40.0% | |
| AAACTGTGCAATGCTGTTAC+AGG | + | chr1_4:62730010-62730029 | None:intergenic | 40.0% | |
| TTGTATGTTTATCCTGCAGC+AGG | - | chr1_4:62730140-62730159 | Msa0176370:intron | 40.0% | |
| TACCTTGCAAGTCAGTCTTA+TGG | - | chr1_4:62730251-62730270 | Msa0176370:intron | 40.0% | |
| CCCCATCTTGTAATATCTGT+TGG | - | chr1_4:62730356-62730375 | Msa0176370:intron | 40.0% | |
| GTTAATTGTAAGGCTGCACA+TGG | - | chr1_4:62730510-62730529 | Msa0176370:intron | 40.0% | |
| ! | GTCATATTTTCCTCATCTCC+AGG | + | chr1_4:62730656-62730675 | None:intergenic | 40.0% |
| TACCCTATCTGACATCTACT+TGG | - | chr1_4:62730802-62730821 | Msa0176370:intron | 40.0% | |
| TGCCAAGTAGATGTCAGATA+GGG | + | chr1_4:62730807-62730826 | None:intergenic | 40.0% | |
| TTGCCAAGTAGATGTCAGAT+AGG | + | chr1_4:62730808-62730827 | None:intergenic | 40.0% | |
| TGGGTATAGTCGATATCTCT+TGG | - | chr1_4:62732276-62732295 | Msa0176370:intron | 40.0% | |
| TGGCACAATCCTACAATTCA+TGG | - | chr1_4:62732407-62732426 | Msa0176370:intron | 40.0% | |
| TGACCGTTTCCATGAATTGT+AGG | + | chr1_4:62732419-62732438 | None:intergenic | 40.0% | |
| ATGGTATTTGACGACGAACA+TGG | + | chr1_4:62732452-62732471 | None:intergenic | 40.0% | |
| ! | AAATGTGTTTTGCAGTCTGC+AGG | - | chr1_4:62732532-62732551 | Msa0176370:CDS | 40.0% |
| ! | TTTTGCAGTCTGCAGGATAT+TGG | - | chr1_4:62732539-62732558 | Msa0176370:CDS | 40.0% |
| AAATTTCAGGGAACACCATC+GGG | - | chr1_4:62732714-62732733 | Msa0176370:CDS | 40.0% | |
| TCAAAATCCCGTGATTGCTT+TGG | - | chr1_4:62732885-62732904 | Msa0176370:intron | 40.0% | |
| CAAAATCCCGTGATTGCTTT+GGG | - | chr1_4:62732886-62732905 | Msa0176370:intron | 40.0% | |
| GAAAAACCCAAAGCAATCAC+GGG | + | chr1_4:62732895-62732914 | None:intergenic | 40.0% | |
| !! | GGTTTTTCAATCACGGATCA+AGG | - | chr1_4:62732907-62732926 | Msa0176370:intron | 40.0% |
| TGACATGAAGAATTTGTCGG+TGG | - | chr1_4:62733020-62733039 | Msa0176370:intron | 40.0% | |
| AATAGACGAAGGAAGTAGAG+AGG | - | chr1_4:62733082-62733101 | Msa0176370:intron | 40.0% | |
| !!! | TTTTTTGCGCTGGAAGTTCA+GGG | - | chr1_4:62733117-62733136 | Msa0176370:intron | 40.0% |
| ! | CATTTTCTTCACTGTATCGG+GGG | + | chr1_4:62733295-62733314 | None:intergenic | 40.0% |
| ! | GCATTTTCTTCACTGTATCG+GGG | + | chr1_4:62733296-62733315 | None:intergenic | 40.0% |
| ! | GGCATTTTCTTCACTGTATC+GGG | + | chr1_4:62733297-62733316 | None:intergenic | 40.0% |
| ACAGTGAAGAAAATGCCTAG+AGG | - | chr1_4:62733300-62733319 | Msa0176370:intron | 40.0% | |
| CAGTGAAGAAAATGCCTAGA+GGG | - | chr1_4:62733301-62733320 | Msa0176370:intron | 40.0% | |
| AGTGAAGAAAATGCCTAGAG+GGG | - | chr1_4:62733302-62733321 | Msa0176370:intron | 40.0% | |
| TCTGCGAGTTATAAAAGAGC+CGG | + | chr1_4:62733478-62733497 | None:intergenic | 40.0% | |
| AGTTACAAAATACAGCCAGG+AGG | - | chr1_4:62733535-62733554 | Msa0176370:intron | 40.0% | |
| ACAACTGTTCTCTCATGAAG+TGG | + | chr1_4:62733646-62733665 | None:intergenic | 40.0% | |
| ACTAACAAGAATGCTACTCG+TGG | + | chr1_4:62733722-62733741 | None:intergenic | 40.0% | |
| ! | ACTGCACTGATACATATCTC+AGG | - | chr1_4:62733943-62733962 | Msa0176370:intron | 40.0% |
| ! | CTGCACTGATACATATCTCA+GGG | - | chr1_4:62733944-62733963 | Msa0176370:intron | 40.0% |
| ACACATCAGAAGTCAACCAA+AGG | + | chr1_4:62734004-62734023 | None:intergenic | 40.0% | |
| !!! | ATGGCTTGTGGTTTTAGATG+AGG | - | chr1_4:62734148-62734167 | Msa0176370:intron | 40.0% |
| TGCAGCAATGCACAGTTTAA+GGG | + | chr1_4:62734271-62734290 | None:intergenic | 40.0% | |
| TTGCAGCAATGCACAGTTTA+AGG | + | chr1_4:62734272-62734291 | None:intergenic | 40.0% | |
| TATGAATCCTTAACTGCGCA+TGG | + | chr1_4:62734388-62734407 | None:intergenic | 40.0% | |
| ! | AAGAAGAGTGTGCGTGACTT+TGG | + | chr1_4:62727665-62727684 | None:intergenic | 45.0% |
| GACTGAAGAGAGAGAAAGGT+TGG | + | chr1_4:62727767-62727786 | None:intergenic | 45.0% | |
| CAGAGACTGAAGAGAGAGAA+AGG | + | chr1_4:62727771-62727790 | None:intergenic | 45.0% | |
| TTCAGTCTCTGCGATTTCTG+CGG | - | chr1_4:62727780-62727799 | Msa0176370:three_prime_UTR | 45.0% | |
| GAGAACAAGGAGAAGAGAGA+AGG | + | chr1_4:62727898-62727917 | None:intergenic | 45.0% | |
| AACGGTCAAGCTTGAGAACA+AGG | + | chr1_4:62727911-62727930 | None:intergenic | 45.0% | |
| CCCTTTCAATGCATGTGTCA+AGG | - | chr1_4:62728111-62728130 | Msa0176370:CDS | 45.0% | |
| GCCTTGACACATGCATTGAA+AGG | + | chr1_4:62728115-62728134 | None:intergenic | 45.0% | |
| CATCTGCTTCATCGTTAGAG+TGG | + | chr1_4:62728613-62728632 | None:intergenic | 45.0% | |
| ! | TTTCCTTTGGCTTATGCGTC+GGG | + | chr1_4:62728664-62728683 | None:intergenic | 45.0% |
| CTTCACATGCATCCTCAGAA+AGG | + | chr1_4:62728787-62728806 | None:intergenic | 45.0% | |
| CTGAGGATGCATGTGAAGTT+AGG | - | chr1_4:62728789-62728808 | Msa0176370:intron | 45.0% | |
| ACCTGTGTTGTGCCATATCT+GGG | - | chr1_4:62728915-62728934 | Msa0176370:intron | 45.0% | |
| CACAAATTGGCACCCAGATA+TGG | + | chr1_4:62728930-62728949 | None:intergenic | 45.0% | |
| TAACCGGATTTGGATCCGTT+AGG | - | chr1_4:62728982-62729001 | Msa0176370:intron | 45.0% | |
| AACCGGATTTGGATCCGTTA+GGG | - | chr1_4:62728983-62729002 | Msa0176370:intron | 45.0% | |
| ! | ATCCCTAACGGATCCAAATC+CGG | + | chr1_4:62728988-62729007 | None:intergenic | 45.0% |
| CTCTTCCATACGTCTTACCT+AGG | + | chr1_4:62729040-62729059 | None:intergenic | 45.0% | |
| GAGATGTATCAGTATGGGTG+TGG | - | chr1_4:62729141-62729160 | Msa0176370:intron | 45.0% | |
| ATGTATCAGTATGGGTGTGG+TGG | - | chr1_4:62729144-62729163 | Msa0176370:intron | 45.0% | |
| TGTATCAGTATGGGTGTGGT+GGG | - | chr1_4:62729145-62729164 | Msa0176370:intron | 45.0% | |
| CTGGTAGCCCCTAATTTACA+TGG | + | chr1_4:62729242-62729261 | None:intergenic | 45.0% | |
| !! | GCTATTTTGTTCACGTGCAG+TGG | - | chr1_4:62729581-62729600 | Msa0176370:intron | 45.0% |
| CATAGCTACACCATTACTGG+TGG | - | chr1_4:62729621-62729640 | Msa0176370:CDS | 45.0% | |
| AGCTCAAATGCCACCAGTAA+TGG | + | chr1_4:62729634-62729653 | None:intergenic | 45.0% | |
| GACAACATCAGGTACTTGTC+TGG | - | chr1_4:62729864-62729883 | Msa0176370:intron | 45.0% | |
| GTCCCTAGACTCCTTAAATG+TGG | - | chr1_4:62729950-62729969 | Msa0176370:CDS | 45.0% | |
| AATGCTGTTACAGGAGCAGA+AGG | + | chr1_4:62730001-62730020 | None:intergenic | 45.0% | |
| TTATCCTGCAGCAGGCAATA+CGG | - | chr1_4:62730148-62730167 | Msa0176370:intron | 45.0% | |
| !! | CTCCATAAGACTGACTTGCA+AGG | + | chr1_4:62730256-62730275 | None:intergenic | 45.0% |
| ATTAGGATGCAGAGAGGTCA+AGG | + | chr1_4:62731661-62731680 | None:intergenic | 45.0% | |
| CACTCAATTAGGATGCAGAG+AGG | + | chr1_4:62731667-62731686 | None:intergenic | 45.0% | |
| ATCCTAATTGAGTGCGCAGT+TGG | - | chr1_4:62731673-62731692 | Msa0176370:intron | 45.0% | |
| AACCAACTGCGCACTCAATT+AGG | + | chr1_4:62731678-62731697 | None:intergenic | 45.0% | |
| CGTTTCTCGTTTGTACGAAG+TGG | - | chr1_4:62732387-62732406 | Msa0176370:intron | 45.0% | |
| AGCTCCTTGCAACAGAAGAA+GGG | + | chr1_4:62732775-62732794 | None:intergenic | 45.0% | |
| ACTTCCAGCGCAAAAAAGTC+TGG | + | chr1_4:62733114-62733133 | None:intergenic | 45.0% | |
| !!! | CTTTTTTGCGCTGGAAGTTC+AGG | - | chr1_4:62733116-62733135 | Msa0176370:intron | 45.0% |
| CAAAGAACGTGATGCTTGCA+GGG | + | chr1_4:62733891-62733910 | None:intergenic | 45.0% | |
| GTATCAGTGCAGTGACACAA+AGG | + | chr1_4:62733936-62733955 | None:intergenic | 45.0% | |
| ATGCACAGTTTAAGGGAGGT+GGG | + | chr1_4:62734264-62734283 | None:intergenic | 45.0% | |
| AATGCACAGTTTAAGGGAGG+TGG | + | chr1_4:62734265-62734284 | None:intergenic | 45.0% | |
| AGCAATGCACAGTTTAAGGG+AGG | + | chr1_4:62734268-62734287 | None:intergenic | 45.0% | |
| AATGCTACCATGCGCAGTTA+AGG | - | chr1_4:62734378-62734397 | Msa0176370:exon | 45.0% | |
| GATTCATATCGCTGTCACTG+AGG | - | chr1_4:62734400-62734419 | Msa0176370:five_prime_UTR | 45.0% | |
| !! | AGTGTGCGTGACTTTGGAAC+AGG | + | chr1_4:62727659-62727678 | None:intergenic | 50.0% |
| CTGCGGCAACACAAAAATGC+TGG | - | chr1_4:62727797-62727816 | Msa0176370:three_prime_UTR | 50.0% | |
| CACACAGCACGCAATTGAAG+GGG | + | chr1_4:62728191-62728210 | None:intergenic | 50.0% | |
| CCACACAGCACGCAATTGAA+GGG | + | chr1_4:62728192-62728211 | None:intergenic | 50.0% | |
| ACCACACAGCACGCAATTGA+AGG | + | chr1_4:62728193-62728212 | None:intergenic | 50.0% | |
| CCAAAGGAAAATTGCCCCTG+CGG | - | chr1_4:62728674-62728693 | Msa0176370:CDS | 50.0% | |
| TCACAATCTCGGTGGTGAAG+AGG | - | chr1_4:62728704-62728723 | Msa0176370:intron | 50.0% | |
| CACAATCTCGGTGGTGAAGA+GGG | - | chr1_4:62728705-62728724 | Msa0176370:intron | 50.0% | |
| ! | GGTGAAGAGGGACTCCATTT+TGG | - | chr1_4:62728717-62728736 | Msa0176370:intron | 50.0% |
| GACCTGTGTTGTGCCATATC+TGG | - | chr1_4:62728914-62728933 | Msa0176370:intron | 50.0% | |
| ACCCAGATATGGCACAACAC+AGG | + | chr1_4:62728919-62728938 | None:intergenic | 50.0% | |
| GGATTTGGATCCGTTAGGGA+TGG | - | chr1_4:62728987-62729006 | Msa0176370:intron | 50.0% | |
| ! | ATATCGATAGGTGGGGGTGT+TGG | - | chr1_4:62729279-62729298 | Msa0176370:intron | 50.0% |
| !! | TATCGATAGGTGGGGGTGTT+GGG | - | chr1_4:62729280-62729299 | Msa0176370:intron | 50.0% |
| ATGTTGTGATAGCACGAGGC+AGG | - | chr1_4:62729439-62729458 | Msa0176370:CDS | 50.0% | |
| CTAGGGACAGACCACAGTTT+AGG | + | chr1_4:62729938-62729957 | None:intergenic | 50.0% | |
| AGGCAATACGGATCTGAGTG+AGG | - | chr1_4:62730160-62730179 | Msa0176370:intron | 50.0% | |
| GGCAATACGGATCTGAGTGA+GGG | - | chr1_4:62730161-62730180 | Msa0176370:intron | 50.0% | |
| AATACGGATCTGAGTGAGGG+TGG | - | chr1_4:62730164-62730183 | Msa0176370:intron | 50.0% | |
| ATACGGATCTGAGTGAGGGT+GGG | - | chr1_4:62730165-62730184 | Msa0176370:intron | 50.0% | |
| ! | ATGTGTAGGGCTTTGATGCC+TGG | - | chr1_4:62730635-62730654 | Msa0176370:intron | 50.0% |
| !! | GGGTATTCGGTGCCTATTTC+AGG | + | chr1_4:62730787-62730806 | None:intergenic | 50.0% |
| GGCAGCAACAAAGAAGACCA+TGG | + | chr1_4:62731519-62731538 | None:intergenic | 50.0% | |
| GGTCAAGGAAAGGTAGGCAA+TGG | + | chr1_4:62731646-62731665 | None:intergenic | 50.0% | |
| CAGAGAGGTCAAGGAAAGGT+AGG | + | chr1_4:62731652-62731671 | None:intergenic | 50.0% | |
| GATGCAGAGAGGTCAAGGAA+AGG | + | chr1_4:62731656-62731675 | None:intergenic | 50.0% | |
| TGCAGTCTGCAGGATATTGG+CGG | - | chr1_4:62732542-62732561 | Msa0176370:CDS | 50.0% | |
| GCGTTGCTCTTGCACTTTGT+AGG | - | chr1_4:62732650-62732669 | Msa0176370:intron | 50.0% | |
| ! | GGTATATCTTTTGCGCCCGA+TGG | + | chr1_4:62732732-62732751 | None:intergenic | 50.0% |
| TCTCCCCTTCTTCTGTTGCA+AGG | - | chr1_4:62732768-62732787 | Msa0176370:CDS | 50.0% | |
| GCTCCTTGCAACAGAAGAAG+GGG | + | chr1_4:62732774-62732793 | None:intergenic | 50.0% | |
| CAGCTCCTTGCAACAGAAGA+AGG | + | chr1_4:62732776-62732795 | None:intergenic | 50.0% | |
| CTTCTTCTGTTGCAAGGAGC+TGG | - | chr1_4:62732774-62732793 | Msa0176370:CDS | 50.0% | |
| !! | GGTTGGTGGTCAATAGACGA+AGG | - | chr1_4:62733071-62733090 | Msa0176370:intron | 50.0% |
| !!! | GAAGCCAGACTTTTTTGCGC+TGG | - | chr1_4:62733107-62733126 | Msa0176370:intron | 50.0% |
| TCCTCAACAAGTTCCCCTCT+AGG | + | chr1_4:62733318-62733337 | None:intergenic | 50.0% | |
| !! | TAGAGGGGAACTTGTTGAGG+AGG | - | chr1_4:62733317-62733336 | Msa0176370:intron | 50.0% |
| TGGAGACTTCAAGCTGCACT+TGG | - | chr1_4:62733500-62733519 | Msa0176370:intron | 50.0% | |
| GCAAAGAACGTGATGCTTGC+AGG | + | chr1_4:62733892-62733911 | None:intergenic | 50.0% | |
| GCAAGCATCACGTTCTTTGC+AGG | - | chr1_4:62733892-62733911 | Msa0176370:intron | 50.0% | |
| TCCGTTCTTCGATTGTCCCA+CGG | + | chr1_4:62734070-62734089 | None:intergenic | 50.0% | |
| TGCACAGTTTAAGGGAGGTG+GGG | + | chr1_4:62734263-62734282 | None:intergenic | 50.0% | |
| GTTCTTCTTCGCAACCTCCG+AGG | - | chr1_4:62727689-62727708 | Msa0176370:three_prime_UTR | 55.0% | |
| CCCTTCAATTGCGTGCTGTG+TGG | - | chr1_4:62728189-62728208 | Msa0176370:intron | 55.0% | |
| ! | CCGCAGGGGCAATTTTCCTT+TGG | + | chr1_4:62728677-62728696 | None:intergenic | 55.0% |
| ATTGTGATTGCGCACCGCAG+GGG | + | chr1_4:62728691-62728710 | None:intergenic | 55.0% | |
| GATTGTGATTGCGCACCGCA+GGG | + | chr1_4:62728692-62728711 | None:intergenic | 55.0% | |
| AGATTGTGATTGCGCACCGC+AGG | + | chr1_4:62728693-62728712 | None:intergenic | 55.0% | |
| GCGGTGCGCAATCACAATCT+CGG | - | chr1_4:62728693-62728712 | Msa0176370:CDS | 55.0% | |
| GTGCGCAATCACAATCTCGG+TGG | - | chr1_4:62728696-62728715 | Msa0176370:intron | 55.0% | |
| CTAGGGCTGCTCACTGTATC+CGG | + | chr1_4:62729022-62729041 | None:intergenic | 55.0% | |
| GCAGCCCTAGGTAAGACGTA+TGG | - | chr1_4:62729032-62729051 | Msa0176370:intron | 55.0% | |
| CTGCTCCTTCGATGCCTCAT+GGG | - | chr1_4:62729472-62729491 | Msa0176370:intron | 55.0% | |
| TGTCTTACTTGGCGCCCATG+AGG | + | chr1_4:62729489-62729508 | None:intergenic | 55.0% | |
| GGAGCAGAAGGCTGCAATGA+AGG | + | chr1_4:62729989-62730008 | None:intergenic | 55.0% | |
| AGATCCGTATTGCCTGCTGC+AGG | + | chr1_4:62730155-62730174 | None:intergenic | 55.0% | |
| ! | GGCTTTGATGCCTGGAGATG+AGG | - | chr1_4:62730643-62730662 | Msa0176370:CDS | 55.0% |
| AAACAAGTCCCACCAGCCCA+GGG | + | chr1_4:62732248-62732267 | None:intergenic | 55.0% | |
| TAAACAAGTCCCACCAGCCC+AGG | + | chr1_4:62732249-62732268 | None:intergenic | 55.0% | |
| GTGCAAGAGCAACGCTGACA+TGG | + | chr1_4:62732645-62732664 | None:intergenic | 55.0% | |
| CAACCTAGCAACCTGCCAAG+AGG | + | chr1_4:62733056-62733075 | None:intergenic | 55.0% | |
| CTCTTGGCAGGTTGCTAGGT+TGG | - | chr1_4:62733054-62733073 | Msa0176370:intron | 55.0% | |
| ! | TTGGCAGGTTGCTAGGTTGG+TGG | - | chr1_4:62733057-62733076 | Msa0176370:intron | 55.0% |
| !! | GCCTAGAGGGGAACTTGTTG+AGG | - | chr1_4:62733314-62733333 | Msa0176370:intron | 55.0% |
| GAACGTGATGCTTGCAGGGA+AGG | + | chr1_4:62733887-62733906 | None:intergenic | 55.0% | |
| !! | AAGAAGTGCCCTATCTGCCG+TGG | - | chr1_4:62734050-62734069 | Msa0176370:intron | 55.0% |
| !! | AGAAGTGCCCTATCTGCCGT+GGG | - | chr1_4:62734051-62734070 | Msa0176370:intron | 55.0% |
| CGATTGTCCCACGGCAGATA+GGG | + | chr1_4:62734061-62734080 | None:intergenic | 55.0% | |
| TCGATTGTCCCACGGCAGAT+AGG | + | chr1_4:62734062-62734081 | None:intergenic | 55.0% | |
| GCCGTGGGACAATCGAAGAA+CGG | - | chr1_4:62734066-62734085 | Msa0176370:intron | 55.0% | |
| GCACCCGACGCATAAGCCAA+AGG | - | chr1_4:62728658-62728677 | Msa0176370:CDS | 60.0% | |
| CGGATACAGTGAGCAGCCCT+AGG | - | chr1_4:62729020-62729039 | Msa0176370:intron | 60.0% | |
| !! | AGGCATCGAAGGAGCAGGCA+AGG | + | chr1_4:62729469-62729488 | None:intergenic | 60.0% |
| !! | CCATGAGGCATCGAAGGAGC+AGG | + | chr1_4:62729474-62729493 | None:intergenic | 60.0% |
| CCTGCTCCTTCGATGCCTCA+TGG | - | chr1_4:62729471-62729490 | Msa0176370:intron | 60.0% | |
| AGGGCAGCAACATCACCTGC+AGG | + | chr1_4:62732229-62732248 | None:intergenic | 60.0% | |
| TGCAGGTGATGTTGCTGCCC+TGG | - | chr1_4:62732228-62732247 | Msa0176370:intron | 60.0% | |
| GCAGGTGATGTTGCTGCCCT+GGG | - | chr1_4:62732229-62732248 | Msa0176370:intron | 60.0% | |
| CCTAGCAACCTGCCAAGAGG+AGG | + | chr1_4:62733053-62733072 | None:intergenic | 60.0% | |
| CCTCCTCTTGGCAGGTTGCT+AGG | - | chr1_4:62733050-62733069 | Msa0176370:intron | 60.0% | |
| CGTGATGCTTGCAGGGAAGG+AGG | + | chr1_4:62733884-62733903 | None:intergenic | 60.0% | |
| !! | TGGCGCCCATGAGGCATCGA+AGG | + | chr1_4:62729480-62729499 | None:intergenic | 65.0% |
| GTGATGTTGCTGCCCTGGGC+TGG | - | chr1_4:62732233-62732252 | Msa0176370:intron | 65.0% | |
| ! | ATGTTGCTGCCCTGGGCTGG+TGG | - | chr1_4:62732236-62732255 | Msa0176370:intron | 65.0% |
| !! | TGTTGCTGCCCTGGGCTGGT+GGG | - | chr1_4:62732237-62732256 | Msa0176370:intron | 65.0% |
| GGTGGCTGCACTCCTCCTCT+TGG | - | chr1_4:62733038-62733057 | Msa0176370:intron | 65.0% | |
| GCTGCACTCCTCCTCTTGGC+AGG | - | chr1_4:62733042-62733061 | Msa0176370:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 62727556 | 62734653 | 62727556 | ID=Msa0176370;Name=Msa0176370 |
| chr1_4 | mRNA | 62727556 | 62734653 | 62727556 | ID=Msa0176370-mRNA-1;Parent=Msa0176370;Name=Msa0176370-mRNA-1;_AED=0.14;_eAED=0.14;_QI=257|1|1|1|0.92|0.92|14|544|467 |
| chr1_4 | exon | 62727556 | 62728178 | 62727556 | ID=Msa0176370-mRNA-1:exon:20205;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62728296 | 62728375 | 62728296 | ID=Msa0176370-mRNA-1:exon:20204;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62728632 | 62728712 | 62728632 | ID=Msa0176370-mRNA-1:exon:20203;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62728871 | 62728931 | 62728871 | ID=Msa0176370-mRNA-1:exon:20202;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62729071 | 62729145 | 62729071 | ID=Msa0176370-mRNA-1:exon:20201;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62729281 | 62729486 | 62729281 | ID=Msa0176370-mRNA-1:exon:20200;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62729587 | 62729839 | 62729587 | ID=Msa0176370-mRNA-1:exon:20199;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62729931 | 62729976 | 62729931 | ID=Msa0176370-mRNA-1:exon:20198;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62730643 | 62730712 | 62730643 | ID=Msa0176370-mRNA-1:exon:20197;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62731506 | 62731575 | 62731506 | ID=Msa0176370-mRNA-1:exon:20196;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62732335 | 62732404 | 62732335 | ID=Msa0176370-mRNA-1:exon:20195;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62732524 | 62732608 | 62732524 | ID=Msa0176370-mRNA-1:exon:20194;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62732709 | 62732799 | 62732709 | ID=Msa0176370-mRNA-1:exon:20193;Parent=Msa0176370-mRNA-1 |
| chr1_4 | exon | 62734260 | 62734653 | 62734260 | ID=Msa0176370-mRNA-1:exon:20192;Parent=Msa0176370-mRNA-1 |
| chr1_4 | five_prime_UTR | 62734397 | 62734653 | 62734397 | ID=Msa0176370-mRNA-1:five_prime_utr;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62734260 | 62734396 | 62734260 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62732709 | 62732799 | 62732709 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62732524 | 62732608 | 62732524 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62732335 | 62732404 | 62732335 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62731506 | 62731575 | 62731506 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62730643 | 62730712 | 62730643 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62729931 | 62729976 | 62729931 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62729587 | 62729839 | 62729587 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62729281 | 62729486 | 62729281 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62729071 | 62729145 | 62729071 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62728871 | 62728931 | 62728871 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62728632 | 62728712 | 62728632 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62728296 | 62728375 | 62728296 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | CDS | 62728100 | 62728178 | 62728100 | ID=Msa0176370-mRNA-1:cds;Parent=Msa0176370-mRNA-1 |
| chr1_4 | three_prime_UTR | 62727556 | 62728099 | 62727556 | ID=Msa0176370-mRNA-1:three_prime_utr;Parent=Msa0176370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
