AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1153680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153680 MtrunA17_Chr7g0244441 96.850 127 4 0 23 149 6 132 7.30e-86 247
Msa1153680 MtrunA17_Chr5g0437991 56.863 153 61 2 1 148 25 177 8.25e-51 160
Msa1153680 MtrunA17_Chr3g0106861 47.682 151 72 2 1 144 1 151 1.58e-37 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1153680 AT3G56220.1 53.521 142 65 1 8 148 13 154 1.09e-45 146
Msa1153680 AT2G40435.1 52.027 148 66 2 1 143 1 148 2.80e-45 145
Msa1153680 AT2G40435.3 55.200 125 51 2 1 120 1 125 1.65e-40 132
Msa1153680 AT2G40435.2 55.200 125 51 2 1 120 1 125 1.99e-40 132
Msa1153680 AT3G56220.2 56.637 113 49 0 8 120 13 125 1.46e-39 130

Find 60 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACTCTTCTATGTATT+TGG 0.117960 7_4:-40679779 None:intergenic
AGCTTCTGTCTAGTTGATTT+TGG 0.169886 7_4:-40679284 None:intergenic
TTTCCTGATTAATGTGCTTT+TGG 0.233548 7_4:+40680235 Msa1153680:CDS
GGTAGGCACCTCATATATTT+TGG 0.249338 7_4:-40682003 None:intergenic
GCATCTTATTATGGATAGTT+TGG 0.280192 7_4:+40682068 Msa1153680:three_prime_UTR
AGAATAACCTAAAAGTTTCT+AGG 0.285112 7_4:-40682404 None:intergenic
TTGTCATCAGCATCTTATTA+TGG 0.300219 7_4:+40682059 Msa1153680:three_prime_UTR
CTGCAAAGCCACCACATATA+TGG 0.302539 7_4:+40679243 Msa1153680:five_prime_UTR
GCCCTTACATAATATTGATA+TGG 0.303015 7_4:+40682035 Msa1153680:three_prime_UTR
TTTCCAAAAGCACATTAATC+AGG 0.331711 7_4:-40680238 None:intergenic
TGGTATGTTGGTATCAATAC+TGG 0.383195 7_4:+40680271 Msa1153680:CDS
GTTGAAAGGCAATAGGTTGA+TGG 0.387582 7_4:-40682455 None:intergenic
CTAGGATGTAACATGTAATA+AGG 0.391510 7_4:-40682386 None:intergenic
CTTTAATTTGTTCTTGCAAA+AGG 0.398020 7_4:-40682309 None:intergenic
AGCCATATCAATATTATGTA+AGG 0.403871 7_4:-40682037 None:intergenic
GTGATATGCCCGCTAATGTA+TGG 0.415150 7_4:+40682166 Msa1153680:three_prime_UTR
AAAAGAATATCGTATCTATA+GGG 0.419953 7_4:+40682205 Msa1153680:three_prime_UTR
ACCCTTTGGTTCCATATATG+TGG 0.438581 7_4:-40679254 None:intergenic
ATCACGGATATTGTTTCACT+TGG 0.443120 7_4:-40681966 None:intergenic
TATTATGGATAGTTTGGAAA+AGG 0.443533 7_4:+40682074 Msa1153680:three_prime_UTR
GAGTGTGAAAACCCTAGAAA+AGG 0.453059 7_4:+40680211 Msa1153680:CDS
GAGGGAATGAACTCTGAGTT+AGG 0.454266 7_4:+40679811 Msa1153680:CDS
CTCCTCCCACAGCTTCTAGC+TGG 0.462141 7_4:-40680355 None:intergenic
TTGTGACATCTCGAAGTTGT+TGG 0.472854 7_4:-40679353 None:intergenic
ACCATGGGAATATGTTGATA+AGG 0.486547 7_4:-40682338 None:intergenic
GGATGCATCCACAATAATTG+AGG 0.487478 7_4:-40679758 None:intergenic
TGAGTCCTCAGCTACTCAAA+TGG 0.501835 7_4:+40679840 Msa1153680:CDS
GACTTGATGTACTTGATGCT+AGG 0.505174 7_4:+40680312 Msa1153680:CDS
AAATTCTGCCAAAATATATG+AGG 0.508014 7_4:+40681995 Msa1153680:three_prime_UTR
ACTTGATGTACTTGATGCTA+GGG 0.510074 7_4:+40680313 Msa1153680:CDS
CTTTGGTTCCATATATGTGG+TGG 0.513382 7_4:-40679251 None:intergenic
CACTTTCCAGCTAGAAGCTG+TGG 0.521335 7_4:+40680349 Msa1153680:CDS
TAGTTTGGAAAAGGAATGAA+TGG 0.527311 7_4:+40682083 Msa1153680:three_prime_UTR
TATAAGAAGCATGGACTCAA+AGG 0.529892 7_4:+40679311 Msa1153680:exon
GGCAGAATTTGATGGAATCA+CGG 0.531542 7_4:-40681982 None:intergenic
TGAGGTGCCTACCACTTCAA+TGG 0.538186 7_4:+40682013 Msa1153680:three_prime_UTR
AAAGAATAGCTCTGGTATGT+TGG 0.538597 7_4:+40680259 Msa1153680:CDS
GAACAAAGCCTCAATTATTG+TGG 0.541995 7_4:+40679750 Msa1153680:CDS
AGTGTGAAAACCCTAGAAAA+GGG 0.544492 7_4:+40680212 Msa1153680:CDS
CGATATACCCATACATTAGC+GGG 0.547505 7_4:-40682174 None:intergenic
GCCTTATCAACATATTCCCA+TGG 0.549449 7_4:+40682337 Msa1153680:three_prime_UTR
CTCATCCATTTGAGTAGCTG+AGG 0.557423 7_4:-40679845 None:intergenic
TTAAGAGTTCTCTCATGCAA+TGG 0.568468 7_4:-40682273 None:intergenic
TAACATGTAATAAGGTGCAA+TGG 0.571162 7_4:-40682378 None:intergenic
AAGCTAAGCTATAAGAAGCA+TGG 0.582822 7_4:+40679302 Msa1153680:exon
TGATATGCCCGCTAATGTAT+GGG 0.591360 7_4:+40682167 Msa1153680:three_prime_UTR
GCCATATCAATATTATGTAA+GGG 0.592517 7_4:-40682036 None:intergenic
ACCACATATATGGAACCAAA+GGG 0.598008 7_4:+40679253 Msa1153680:five_prime_UTR
CACCACATATATGGAACCAA+AGG 0.611250 7_4:+40679252 Msa1153680:five_prime_UTR
CGATAGTATCAATGCGCAAG+TGG 0.619080 7_4:+40681822 Msa1153680:CDS
TCTTACATACATAGAAACCA+TGG 0.619324 7_4:-40682354 None:intergenic
CTCAAAGGATCAAAGAAGAG+TGG 0.624663 7_4:+40679326 Msa1153680:CDS
GTAAGGGCCATTGAAGTGGT+AGG 0.625867 7_4:-40682020 None:intergenic
TTATGTAAGGGCCATTGAAG+TGG 0.626980 7_4:-40682024 None:intergenic
ACTTTCCAGCTAGAAGCTGT+GGG 0.644780 7_4:+40680350 Msa1153680:CDS
CTTACATACATAGAAACCAT+GGG 0.650049 7_4:-40682353 None:intergenic
ACGATATACCCATACATTAG+CGG 0.675005 7_4:-40682175 None:intergenic
TCAAATGGATGAGCAACCCA+TGG 0.677113 7_4:+40679855 Msa1153680:CDS
TTCCAGCTAGAAGCTGTGGG+AGG 0.678404 7_4:+40680353 Msa1153680:CDS
GTTGCAAGCAATCAAGAACA+CGG 0.713497 7_4:+40681858 Msa1153680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTATTTTATTTTTAT+AGG + chr7_4:40680187-40680206 Msa1153680:intron 0.0%
!!! TTAAAATTTTATTTATTTAT+TGG + chr7_4:40681362-40681381 Msa1153680:intron 0.0%
!! AAATAAAAATATTCTGATAA+TGG - chr7_4:40680009-40680028 None:intergenic 10.0%
!!! TTATCAGAATATTTTTATTT+TGG + chr7_4:40680009-40680028 Msa1153680:intron 10.0%
!!! CTTTATTTATACATTTTATT+TGG - chr7_4:40680666-40680685 None:intergenic 10.0%
!!! ATAAAATATATATGATGATG+AGG + chr7_4:40681741-40681760 Msa1153680:intron 15.0%
!!! AAATATTGAACTCTTTGTTT+TGG - chr7_4:40679530-40679549 None:intergenic 20.0%
!! TAGTAGCAAATATTGAATTA+TGG + chr7_4:40679690-40679709 Msa1153680:intron 20.0%
!! GTTATTGGTGTATTATATAT+TGG + chr7_4:40679886-40679905 Msa1153680:intron 20.0%
!!! CATTGTTTCTAGTTTTATTT+TGG + chr7_4:40679924-40679943 Msa1153680:intron 20.0%
!!! AAAATATTCTGATAATGGAA+AGG - chr7_4:40680004-40680023 None:intergenic 20.0%
!! ATATAAAAATAGAGTAGAAG+AGG - chr7_4:40680081-40680100 None:intergenic 20.0%
!! ATATAAATATGCAAAAGATG+CGG - chr7_4:40680146-40680165 None:intergenic 20.0%
!! AACTATAGATTAAAGAGAAA+TGG - chr7_4:40680413-40680432 None:intergenic 20.0%
!! TATTTAAAAGCCTTACATAT+GGG - chr7_4:40680722-40680741 None:intergenic 20.0%
!! TTATTATCAAAGTCATTTCA+AGG - chr7_4:40681078-40681097 None:intergenic 20.0%
!! TTAATTCAATTTGAGTAAGA+TGG + chr7_4:40681428-40681447 Msa1153680:intron 20.0%
!! TCTACTAACAAACAAAAATT+AGG + chr7_4:40681452-40681471 Msa1153680:intron 20.0%
!!! TCTAATTTTGATCTTTTCTA+AGG + chr7_4:40681572-40681591 Msa1153680:intron 20.0%
!!! ATACCTATTTTTCTTTCATT+CGG + chr7_4:40681611-40681630 Msa1153680:intron 20.0%
!!! ATTTTACAAGTTTCAAGTTA+TGG + chr7_4:40682111-40682130 Msa1153680:three_prime_UTR 20.0%
!!! AGTAACATTTTGTATTTTAG+TGG + chr7_4:40682135-40682154 Msa1153680:three_prime_UTR 20.0%
!!! GTAACATTTTGTATTTTAGT+GGG + chr7_4:40682136-40682155 Msa1153680:three_prime_UTR 20.0%
!! AAAAAGAATATCGTATCTAT+AGG + chr7_4:40682204-40682223 Msa1153680:three_prime_UTR 20.0%
!! AAAAGAATATCGTATCTATA+GGG + chr7_4:40682205-40682224 Msa1153680:three_prime_UTR 20.0%
!!! TTTTGCAAGAACAAATTAAA+GGG + chr7_4:40682311-40682330 Msa1153680:three_prime_UTR 20.0%
! GATATCAAGTATATTCACTT+TGG + chr7_4:40679560-40679579 Msa1153680:intron 25.0%
! AGTAATTAATTCGTTAGAAG+TGG + chr7_4:40679658-40679677 Msa1153680:intron 25.0%
!!! TTCTAGTTTTATTTTGGAAG+TGG + chr7_4:40679930-40679949 Msa1153680:intron 25.0%
!!! TCTAGTTTTATTTTGGAAGT+GGG + chr7_4:40679931-40679950 Msa1153680:intron 25.0%
!! GGTTTTCTCTATTTCATTAA+TGG + chr7_4:40679952-40679971 Msa1153680:intron 25.0%
!! CTCTTCTTTTATATATAGCT+TGG + chr7_4:40680051-40680070 Msa1153680:intron 25.0%
!!! CAAAAGCATTAAGATTTTCT+GGG - chr7_4:40680482-40680501 None:intergenic 25.0%
!!! AAAGGAGCATTTAATACTAT+CGG + chr7_4:40680508-40680527 Msa1153680:intron 25.0%
! TTGCATTGTCACAAATATTT+AGG + chr7_4:40680553-40680572 Msa1153680:intron 25.0%
! GTATTTAAAAGCCTTACATA+TGG - chr7_4:40680723-40680742 None:intergenic 25.0%
! CATACAAAAGAATATACATC+TGG + chr7_4:40680811-40680830 Msa1153680:intron 25.0%
! AGAACGAATAAATCATTTCA+AGG - chr7_4:40680932-40680951 None:intergenic 25.0%
! CATACAAAAGAATATACATC+TGG + chr7_4:40680811-40680830 Msa1153680:intron 25.0%
! ATTCCGAATGAAAGAAAAAT+AGG - chr7_4:40681617-40681636 None:intergenic 25.0%
! ATTATTATGTTGTTGCCTAA+AGG + chr7_4:40681702-40681721 Msa1153680:intron 25.0%
! TACCAATATTTAACACCTTT+AGG - chr7_4:40681720-40681739 None:intergenic 25.0%
!!! TTATTTTATGCAGAGTCATA+AGG + chr7_4:40681798-40681817 Msa1153680:intron 25.0%
!!! TATATTTTGGCAGAATTTGA+TGG - chr7_4:40681993-40682012 None:intergenic 25.0%
! AAATTCTGCCAAAATATATG+AGG + chr7_4:40681995-40682014 Msa1153680:three_prime_UTR 25.0%
! GCCATATCAATATTATGTAA+GGG - chr7_4:40682039-40682058 None:intergenic 25.0%
! AGCCATATCAATATTATGTA+AGG - chr7_4:40682040-40682059 None:intergenic 25.0%
! TATTATGGATAGTTTGGAAA+AGG + chr7_4:40682074-40682093 Msa1153680:three_prime_UTR 25.0%
!!! CTTTAATTTGTTCTTGCAAA+AGG - chr7_4:40682312-40682331 None:intergenic 25.0%
!! CTTTTGCAAGAACAAATTAA+AGG + chr7_4:40682310-40682329 Msa1153680:three_prime_UTR 25.0%
! AGAATAACCTAAAAGTTTCT+AGG - chr7_4:40682407-40682426 None:intergenic 25.0%
ATATTCCAACTCAATAAAGG+AGG + chr7_4:40679490-40679509 Msa1153680:intron 30.0%
ATAGCATTGTGTGTCTTTAT+TGG - chr7_4:40679603-40679622 None:intergenic 30.0%
! TTACCCATTTGGGATATTAA+AGG - chr7_4:40679720-40679739 None:intergenic 30.0%
AATATCCCAAATGGGTAAAT+TGG + chr7_4:40679722-40679741 Msa1153680:intron 30.0%
CTTCAACTCTTCTATGTATT+TGG - chr7_4:40679782-40679801 None:intergenic 30.0%
CTAGAAACAATGATGTTACT+AGG - chr7_4:40679916-40679935 None:intergenic 30.0%
! TTTCCTGATTAATGTGCTTT+TGG + chr7_4:40680235-40680254 Msa1153680:CDS 30.0%
! TTTCCAAAAGCACATTAATC+AGG - chr7_4:40680241-40680260 None:intergenic 30.0%
!!! CCAAAAGCATTAAGATTTTC+TGG - chr7_4:40680483-40680502 None:intergenic 30.0%
! CCAGAAAATCTTAATGCTTT+TGG + chr7_4:40680480-40680499 Msa1153680:intron 30.0%
!!! TTAATGCTTTTGGAGCTTAA+AGG + chr7_4:40680490-40680509 Msa1153680:intron 30.0%
!! AAGGAGCATTTAATACTATC+GGG + chr7_4:40680509-40680528 Msa1153680:intron 30.0%
TATCGGGTATATCAATATTG+AGG + chr7_4:40680525-40680544 Msa1153680:intron 30.0%
ATTCGTGAAAAACACTTAGT+TGG - chr7_4:40680690-40680709 None:intergenic 30.0%
! TAAGTGTTTTTCACGAATAC+TGG + chr7_4:40680692-40680711 Msa1153680:intron 30.0%
! ATATACATCTGGAGTTCTAA+AGG + chr7_4:40680822-40680841 Msa1153680:intron 30.0%
!! TATACATCTGGAGTTCTAAA+GGG + chr7_4:40680823-40680842 Msa1153680:intron 30.0%
! ATATACATCTGGAGTTCTAA+AGG + chr7_4:40680822-40680841 Msa1153680:intron 30.0%
!! TATACATCTGGAGTTCTAAA+GGG + chr7_4:40680823-40680842 Msa1153680:intron 30.0%
! TTAAAAGCATACTTACCAAG+AGG + chr7_4:40681160-40681179 Msa1153680:intron 30.0%
!! TGCCTAAAGGTGTTAAATAT+TGG + chr7_4:40681715-40681734 Msa1153680:intron 30.0%
! AACAAGACAAAAAAGTGTAC+TGG - chr7_4:40681917-40681936 None:intergenic 30.0%
GCCCTTACATAATATTGATA+TGG + chr7_4:40682035-40682054 Msa1153680:three_prime_UTR 30.0%
TTGTCATCAGCATCTTATTA+TGG + chr7_4:40682059-40682078 Msa1153680:three_prime_UTR 30.0%
GCATCTTATTATGGATAGTT+TGG + chr7_4:40682068-40682087 Msa1153680:three_prime_UTR 30.0%
TAGTTTGGAAAAGGAATGAA+TGG + chr7_4:40682083-40682102 Msa1153680:three_prime_UTR 30.0%
!!! ACATTTTGTATTTTAGTGGG+TGG + chr7_4:40682139-40682158 Msa1153680:three_prime_UTR 30.0%
!!! CATTTTGTATTTTAGTGGGT+GGG + chr7_4:40682140-40682159 Msa1153680:three_prime_UTR 30.0%
!!! ATTTTGTATTTTAGTGGGTG+GGG + chr7_4:40682141-40682160 Msa1153680:three_prime_UTR 30.0%
CTTACATACATAGAAACCAT+GGG - chr7_4:40682356-40682375 None:intergenic 30.0%
TCTTACATACATAGAAACCA+TGG - chr7_4:40682357-40682376 None:intergenic 30.0%
TAACATGTAATAAGGTGCAA+TGG - chr7_4:40682381-40682400 None:intergenic 30.0%
CTAGGATGTAACATGTAATA+AGG - chr7_4:40682389-40682408 None:intergenic 30.0%
! GTTACATCCTAGAAACTTTT+AGG + chr7_4:40682397-40682416 Msa1153680:three_prime_UTR 30.0%
ACCACATATATGGAACCAAA+GGG + chr7_4:40679253-40679272 Msa1153680:five_prime_UTR 35.0%
!!! ATTTTGGTTTTCTCACCCTT+TGG - chr7_4:40679271-40679290 None:intergenic 35.0%
!! AGCTTCTGTCTAGTTGATTT+TGG - chr7_4:40679287-40679306 None:intergenic 35.0%
AAGCTAAGCTATAAGAAGCA+TGG + chr7_4:40679302-40679321 Msa1153680:exon 35.0%
! TATAAGAAGCATGGACTCAA+AGG + chr7_4:40679311-40679330 Msa1153680:exon 35.0%
GGGATATTCCAACTCAATAA+AGG + chr7_4:40679487-40679506 Msa1153680:intron 35.0%
ACCTCCTTTAATATCCCAAA+TGG + chr7_4:40679713-40679732 Msa1153680:intron 35.0%
CCTCCTTTAATATCCCAAAT+GGG + chr7_4:40679714-40679733 Msa1153680:intron 35.0%
ATCTGCCAATTTACCCATTT+GGG - chr7_4:40679730-40679749 None:intergenic 35.0%
GAACAAAGCCTCAATTATTG+TGG + chr7_4:40679750-40679769 Msa1153680:CDS 35.0%
AGAAGAGTTGAAGCAAAAAG+TGG + chr7_4:40679789-40679808 Msa1153680:CDS 35.0%
CCAATAACAAGTAGTACCAT+GGG - chr7_4:40679874-40679893 None:intergenic 35.0%
ACCAATAACAAGTAGTACCA+TGG - chr7_4:40679875-40679894 None:intergenic 35.0%
AGTGTGAAAACCCTAGAAAA+GGG + chr7_4:40680212-40680231 Msa1153680:CDS 35.0%
! AATCAGGAAACCCTTTTCTA+GGG - chr7_4:40680225-40680244 None:intergenic 35.0%
! TAATCAGGAAACCCTTTTCT+AGG - chr7_4:40680226-40680245 None:intergenic 35.0%
!! CTTTTGGAAAAGAATAGCTC+TGG + chr7_4:40680251-40680270 Msa1153680:CDS 35.0%
!! AAAGAATAGCTCTGGTATGT+TGG + chr7_4:40680259-40680278 Msa1153680:CDS 35.0%
TGGTATGTTGGTATCAATAC+TGG + chr7_4:40680271-40680290 Msa1153680:CDS 35.0%
ACTTGATGTACTTGATGCTA+GGG + chr7_4:40680313-40680332 Msa1153680:CDS 35.0%
!! ATTTCAAGGTTTGCTACTAC+GGG - chr7_4:40680918-40680937 None:intergenic 35.0%
!! CATTTCAAGGTTTGCTACTA+CGG - chr7_4:40680919-40680938 None:intergenic 35.0%
!! ATTTCAAGGTTTGCTACTAC+GGG - chr7_4:40680918-40680937 None:intergenic 35.0%
!! CATTTCAAGGTTTGCTACTA+CGG - chr7_4:40680919-40680938 None:intergenic 35.0%
! CAAGTAATCACGTGAGTTTT+AGG - chr7_4:40681407-40681426 None:intergenic 35.0%
! ATGCAAGCTCTTTCTTTTGT+TGG - chr7_4:40681672-40681691 None:intergenic 35.0%
ATCACGGATATTGTTTCACT+TGG - chr7_4:40681969-40681988 None:intergenic 35.0%
ACGATATACCCATACATTAG+CGG - chr7_4:40682178-40682197 None:intergenic 35.0%
TTAAGAGTTCTCTCATGCAA+TGG - chr7_4:40682276-40682295 None:intergenic 35.0%
ACCATGGGAATATGTTGATA+AGG - chr7_4:40682341-40682360 None:intergenic 35.0%
! CTTTGGTTCCATATATGTGG+TGG - chr7_4:40679254-40679273 None:intergenic 40.0%
CACCACATATATGGAACCAA+AGG + chr7_4:40679252-40679271 Msa1153680:five_prime_UTR 40.0%
! ACCCTTTGGTTCCATATATG+TGG - chr7_4:40679257-40679276 None:intergenic 40.0%
CTCAAAGGATCAAAGAAGAG+TGG + chr7_4:40679326-40679345 Msa1153680:CDS 40.0%
TTGTGACATCTCGAAGTTGT+TGG - chr7_4:40679356-40679375 None:intergenic 40.0%
ACAAGCTCAACTGCTGTAAT+TGG + chr7_4:40679372-40679391 Msa1153680:intron 40.0%
CTTCTCCTCCTTTATTGAGT+TGG - chr7_4:40679498-40679517 None:intergenic 40.0%
! CCCATTTGGGATATTAAAGG+AGG - chr7_4:40679717-40679736 None:intergenic 40.0%
CATCTGCCAATTTACCCATT+TGG - chr7_4:40679731-40679750 None:intergenic 40.0%
GGATGCATCCACAATAATTG+AGG - chr7_4:40679761-40679780 None:intergenic 40.0%
AGAGTTGAAGCAAAAAGTGG+AGG + chr7_4:40679792-40679811 Msa1153680:CDS 40.0%
GAGTTGAAGCAAAAAGTGGA+GGG + chr7_4:40679793-40679812 Msa1153680:CDS 40.0%
!! CCCATGGTACTACTTGTTAT+TGG + chr7_4:40679871-40679890 Msa1153680:intron 40.0%
GAGTGTGAAAACCCTAGAAA+AGG + chr7_4:40680211-40680230 Msa1153680:CDS 40.0%
!! ACTGGAAGCTTTTGAAGATC+TGG + chr7_4:40680289-40680308 Msa1153680:CDS 40.0%
!! CTGGAAGCTTTTGAAGATCT+GGG + chr7_4:40680290-40680309 Msa1153680:CDS 40.0%
GACTTGATGTACTTGATGCT+AGG + chr7_4:40680312-40680331 Msa1153680:CDS 40.0%
TACTGGCATTCCCATATGTA+AGG + chr7_4:40680709-40680728 Msa1153680:intron 40.0%
!! AAGGGTACTCATGGCTATTT+AGG + chr7_4:40680841-40680860 Msa1153680:intron 40.0%
! AGGGTACTCATGGCTATTTA+GGG + chr7_4:40680842-40680861 Msa1153680:intron 40.0%
!! AAGGGTACTCATGGCTATTT+AGG + chr7_4:40680841-40680860 Msa1153680:intron 40.0%
! AGGGTACTCATGGCTATTTA+GGG + chr7_4:40680842-40680861 Msa1153680:intron 40.0%
AATCACATGAGAGGGGAATT+TGG - chr7_4:40681767-40681786 None:intergenic 40.0%
TCACCAAGAATCACATGAGA+GGG - chr7_4:40681775-40681794 None:intergenic 40.0%
TTCACCAAGAATCACATGAG+AGG - chr7_4:40681776-40681795 None:intergenic 40.0%
GTTGCAAGCAATCAAGAACA+CGG + chr7_4:40681858-40681877 Msa1153680:CDS 40.0%
GGCAGAATTTGATGGAATCA+CGG - chr7_4:40681985-40682004 None:intergenic 40.0%
! GGTAGGCACCTCATATATTT+TGG - chr7_4:40682006-40682025 None:intergenic 40.0%
TTATGTAAGGGCCATTGAAG+TGG - chr7_4:40682027-40682046 None:intergenic 40.0%
TGATATGCCCGCTAATGTAT+GGG + chr7_4:40682167-40682186 Msa1153680:three_prime_UTR 40.0%
CGATATACCCATACATTAGC+GGG - chr7_4:40682177-40682196 None:intergenic 40.0%
GCCTTATCAACATATTCCCA+TGG + chr7_4:40682337-40682356 Msa1153680:three_prime_UTR 40.0%
CTGCAAAGCCACCACATATA+TGG + chr7_4:40679243-40679262 Msa1153680:five_prime_UTR 45.0%
GAGGGAATGAACTCTGAGTT+AGG + chr7_4:40679811-40679830 Msa1153680:CDS 45.0%
TGAGTCCTCAGCTACTCAAA+TGG + chr7_4:40679840-40679859 Msa1153680:CDS 45.0%
CTCATCCATTTGAGTAGCTG+AGG - chr7_4:40679848-40679867 None:intergenic 45.0%
TCAAATGGATGAGCAACCCA+TGG + chr7_4:40679855-40679874 Msa1153680:CDS 45.0%
ACTTTCCAGCTAGAAGCTGT+GGG + chr7_4:40680350-40680369 Msa1153680:CDS 45.0%
!! GGAGTTCTAAAGGGTACTCA+TGG + chr7_4:40680832-40680851 Msa1153680:intron 45.0%
!! GGTTTGCTACTACGGGAAAA+GGG - chr7_4:40680911-40680930 None:intergenic 45.0%
!! AGGTTTGCTACTACGGGAAA+AGG - chr7_4:40680912-40680931 None:intergenic 45.0%
!! GGAGTTCTAAAGGGTACTCA+TGG + chr7_4:40680832-40680851 Msa1153680:intron 45.0%
!! GGTTTGCTACTACGGGAAAA+GGG - chr7_4:40680911-40680930 None:intergenic 45.0%
!! AGGTTTGCTACTACGGGAAA+AGG - chr7_4:40680912-40680931 None:intergenic 45.0%
AGTGTCATATGCACTCCTCT+TGG - chr7_4:40681178-40681197 None:intergenic 45.0%
!!! CGTGAGTTTTAGGTGCTCAA+GGG - chr7_4:40681397-40681416 None:intergenic 45.0%
!!! ACGTGAGTTTTAGGTGCTCA+AGG - chr7_4:40681398-40681417 None:intergenic 45.0%
TTCCCCTCTCATGTGATTCT+TGG + chr7_4:40681769-40681788 Msa1153680:intron 45.0%
CACCAAGAATCACATGAGAG+GGG - chr7_4:40681774-40681793 None:intergenic 45.0%
CGATAGTATCAATGCGCAAG+TGG + chr7_4:40681822-40681841 Msa1153680:CDS 45.0%
GTGATATGCCCGCTAATGTA+TGG + chr7_4:40682166-40682185 Msa1153680:three_prime_UTR 45.0%
!! AAAAAAAAAAAAAAAAGTTA+AGG + chr7_4:40679466-40679485 Msa1153680:intron 5.0%
!! AAAAAAAAAAAAAAAGTTAA+GGG + chr7_4:40679467-40679486 Msa1153680:intron 5.0%
!!! TTTAATACTTTATTTTTTAT+TGG + chr7_4:40681217-40681236 Msa1153680:intron 5.0%
!!! AATAAATAAAATTTTAAAAG+AGG - chr7_4:40681359-40681378 None:intergenic 5.0%
CACTTTCCAGCTAGAAGCTG+TGG + chr7_4:40680349-40680368 Msa1153680:CDS 50.0%
! TGAGGTGCCTACCACTTCAA+TGG + chr7_4:40682013-40682032 Msa1153680:three_prime_UTR 50.0%
GTAAGGGCCATTGAAGTGGT+AGG - chr7_4:40682023-40682042 None:intergenic 50.0%
TTCCAGCTAGAAGCTGTGGG+AGG + chr7_4:40680353-40680372 Msa1153680:CDS 55.0%
CTCCTCCCACAGCTTCTAGC+TGG - chr7_4:40680358-40680377 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 40679230 40682463 40679230 ID=Msa1153680;Name=Msa1153680
chr7_4 mRNA 40679230 40682463 40679230 ID=Msa1153680-mRNA-1;Parent=Msa1153680;Name=Msa1153680-mRNA-1;_AED=0.13;_eAED=0.13;_QI=91|1|1|1|0.66|0.75|4|569|149
chr7_4 exon 40679230 40679386 40679230 ID=Msa1153680-mRNA-1:exon:9850;Parent=Msa1153680-mRNA-1
chr7_4 exon 40679748 40679876 40679748 ID=Msa1153680-mRNA-1:exon:9851;Parent=Msa1153680-mRNA-1
chr7_4 exon 40680209 40680379 40680209 ID=Msa1153680-mRNA-1:exon:9852;Parent=Msa1153680-mRNA-1
chr7_4 exon 40681811 40682463 40681811 ID=Msa1153680-mRNA-1:exon:9853;Parent=Msa1153680-mRNA-1
chr7_4 five_prime_UTR 40679230 40679320 40679230 ID=Msa1153680-mRNA-1:five_prime_utr;Parent=Msa1153680-mRNA-1
chr7_4 CDS 40679321 40679386 40679321 ID=Msa1153680-mRNA-1:cds;Parent=Msa1153680-mRNA-1
chr7_4 CDS 40679748 40679876 40679748 ID=Msa1153680-mRNA-1:cds;Parent=Msa1153680-mRNA-1
chr7_4 CDS 40680209 40680379 40680209 ID=Msa1153680-mRNA-1:cds;Parent=Msa1153680-mRNA-1
chr7_4 CDS 40681811 40681894 40681811 ID=Msa1153680-mRNA-1:cds;Parent=Msa1153680-mRNA-1
chr7_4 three_prime_UTR 40681895 40682463 40681895 ID=Msa1153680-mRNA-1:three_prime_utr;Parent=Msa1153680-mRNA-1
Gene Sequence

>Msa1153680

ATGGACTCAAAGGATCAAAGAAGAGTGGCTCTCCAACAACTTCGAGATGTCACAAGCTCAACTGCTATGAACAAAGCCTCAATTATTGTGGATGCATCCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCTGAGTTAGGAAACGTTGAGTCCTCAGCTACTCAAATGGATGAGCAACCCATGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCCTGATTAATGTGCTTTTGGAAAAGAATAGCTCTGGTATGTTGGTATCAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTACTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGATAGTCATAAGGACGATAGTATCAATGCGCAAGTGGTGAAGCAAGCAGTGTTGCAAGCAATCAAGAACACGGACTCATCAAAATGA

Protein sequence

>Msa1153680

MDSKDQRRVALQQLRDVTSSTAMNKASIIVDASKYIEELKQKVEGMNSELGNVESSATQMDEQPMVSVKTLEKGFLINVLLEKNSSGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDSSK*