Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455890 | XP_003600399.2 | 86.916 | 214 | 10 | 2 | 19 | 214 | 1 | 214 | 6.47e-127 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455890 | sp|Q944B0|FK161_ARATH | 56.039 | 207 | 59 | 5 | 25 | 205 | 7 | 207 | 4.33e-65 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455890 | G7IXS8 | 86.916 | 214 | 10 | 2 | 19 | 214 | 1 | 214 | 3.09e-127 | 367 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001510 | Msa0455890 | 0.818411 | 1.987506e-52 | -8.615850e-47 |
| Msa0004180 | Msa0455890 | 0.802024 | 6.826962e-49 | -8.615850e-47 |
| Msa0024070 | Msa0455890 | 0.806195 | 9.253775e-50 | -8.615850e-47 |
| Msa0037300 | Msa0455890 | 0.817350 | 3.451092e-52 | -8.615850e-47 |
| Msa0064490 | Msa0455890 | 0.800009 | 1.761757e-48 | -8.615850e-47 |
| Msa0075080 | Msa0455890 | 0.824435 | 8.084612e-54 | -8.615850e-47 |
| Msa0076590 | Msa0455890 | 0.832296 | 1.024990e-55 | -8.615850e-47 |
| Msa0077990 | Msa0455890 | 0.800976 | 1.119593e-48 | -8.615850e-47 |
| Msa0079100 | Msa0455890 | 0.828142 | 1.059318e-54 | -8.615850e-47 |
| Msa0102290 | Msa0455890 | 0.804187 | 2.436038e-49 | -8.615850e-47 |
| Msa0118700 | Msa0455890 | 0.804256 | 2.357387e-49 | -8.615850e-47 |
| Msa0122930 | Msa0455890 | 0.825876 | 3.691210e-54 | -8.615850e-47 |
| Msa0127510 | Msa0455890 | 0.878910 | 1.915600e-69 | -8.615850e-47 |
| Msa0167570 | Msa0455890 | 0.806828 | 6.806098e-50 | -8.615850e-47 |
| Msa0178020 | Msa0455890 | 0.812849 | 3.446698e-51 | -8.615850e-47 |
| Msa0182610 | Msa0455890 | 0.802845 | 4.623652e-49 | -8.615850e-47 |
| Msa0182940 | Msa0455890 | 0.812475 | 4.161644e-51 | -8.615850e-47 |
| Msa0185540 | Msa0455890 | 0.831048 | 2.082153e-55 | -8.615850e-47 |
| Msa0191180 | Msa0455890 | 0.845777 | 3.286790e-59 | -8.615850e-47 |
| Msa0211590 | Msa0455890 | 0.823856 | 1.105878e-53 | -8.615850e-47 |
| Msa0211600 | Msa0455890 | 0.812145 | 4.911861e-51 | -8.615850e-47 |
| Msa0224180 | Msa0455890 | 0.819231 | 1.294386e-52 | -8.615850e-47 |
| Msa0371010 | Msa0455890 | 0.806115 | 9.622210e-50 | -8.615850e-47 |
| Msa0373640 | Msa0455890 | 0.822385 | 2.436694e-53 | -8.615850e-47 |
| Msa0380470 | Msa0455890 | 0.808399 | 3.157269e-50 | -8.615850e-47 |
| Msa0390760 | Msa0455890 | 0.819754 | 9.839078e-53 | -8.615850e-47 |
| Msa0393880 | Msa0455890 | 0.828843 | 7.174666e-55 | -8.615850e-47 |
| Msa0425810 | Msa0455890 | 0.800524 | 1.384380e-48 | -8.615850e-47 |
| Msa0428280 | Msa0455890 | 0.808392 | 3.167369e-50 | -8.615850e-47 |
| Msa0431550 | Msa0455890 | 0.814065 | 1.862593e-51 | -8.615850e-47 |
| Msa0436660 | Msa0455890 | 0.812377 | 4.370783e-51 | -8.615850e-47 |
| Msa0440720 | Msa0455890 | 0.850384 | 1.758765e-60 | -8.615850e-47 |
| Msa0441670 | Msa0455890 | 0.806000 | 1.017453e-49 | -8.615850e-47 |
| Msa0455890 | Msa0472570 | 0.800599 | 1.336275e-48 | -8.615850e-47 |
| Msa0455890 | Msa0476140 | 0.816530 | 5.273397e-52 | -8.615850e-47 |
| Msa0455890 | Msa0476560 | 0.820007 | 8.611871e-53 | -8.615850e-47 |
| Msa0455890 | Msa0489330 | 0.807777 | 4.281605e-50 | -8.615850e-47 |
| Msa0455890 | Msa0500580 | 0.809538 | 1.800987e-50 | -8.615850e-47 |
| Msa0455890 | Msa0514630 | 0.820559 | 6.435088e-53 | -8.615850e-47 |
| Msa0455890 | Msa0519090 | 0.819858 | 9.313909e-53 | -8.615850e-47 |
| Msa0455890 | Msa0521840 | 0.800891 | 1.164797e-48 | -8.615850e-47 |
| Msa0455890 | Msa0538020 | 0.804395 | 2.205349e-49 | -8.615850e-47 |
| Msa0455890 | Msa0555210 | 0.804080 | 2.564499e-49 | -8.615850e-47 |
| Msa0455890 | Msa0556960 | 0.804965 | 1.676602e-49 | -8.615850e-47 |
| Msa0455890 | Msa0575670 | 0.804290 | 2.318947e-49 | -8.615850e-47 |
| Msa0455890 | Msa0596880 | 0.818944 | 1.504873e-52 | -8.615850e-47 |
| Msa0455890 | Msa0598980 | 0.801402 | 9.158633e-49 | -8.615850e-47 |
| Msa0455890 | Msa0608720 | 0.803950 | 2.729881e-49 | -8.615850e-47 |
| Msa0455890 | Msa0616570 | 0.805599 | 1.235009e-49 | -8.615850e-47 |
| Msa0455890 | Msa0619960 | 0.820638 | 6.170021e-53 | -8.615850e-47 |
| Msa0455890 | Msa0620050 | 0.817494 | 3.202628e-52 | -8.615850e-47 |
| Msa0455890 | Msa0625820 | 0.816773 | 4.652297e-52 | -8.615850e-47 |
| Msa0455890 | Msa0639040 | 0.801993 | 6.927185e-49 | -8.615850e-47 |
| Msa0455890 | Msa0644220 | 0.821090 | 4.856955e-53 | -8.615850e-47 |
| Msa0455890 | Msa0649140 | 0.813398 | 2.611438e-51 | -8.615850e-47 |
| Msa0455890 | Msa0653690 | 0.826822 | 2.197297e-54 | -8.615850e-47 |
| Msa0455890 | Msa0655980 | 0.804892 | 1.736615e-49 | -8.615850e-47 |
| Msa0455890 | Msa0684030 | 0.810790 | 9.674361e-51 | -8.615850e-47 |
| Msa0455890 | Msa0699200 | 0.812556 | 3.994891e-51 | -8.615850e-47 |
| Msa0455890 | Msa0699900 | 0.804131 | 2.502975e-49 | -8.615850e-47 |
| Msa0455890 | Msa0745270 | 0.810009 | 1.426071e-50 | -8.615850e-47 |
| Msa0455890 | Msa0748470 | 0.805898 | 1.068694e-49 | -8.615850e-47 |
| Msa0455890 | Msa0750200 | 0.800303 | 1.535450e-48 | -8.615850e-47 |
| Msa0455890 | Msa0766950 | 0.829895 | 3.984355e-55 | -8.615850e-47 |
| Msa0455890 | Msa0772530 | 0.808908 | 2.457741e-50 | -8.615850e-47 |
| Msa0455890 | Msa0790380 | 0.805282 | 1.439170e-49 | -8.615850e-47 |
| Msa0455890 | Msa0799150 | 0.801515 | 8.682044e-49 | -8.615850e-47 |
| Msa0455890 | Msa0868500 | 0.805372 | 1.378264e-49 | -8.615850e-47 |
| Msa0455890 | Msa0868520 | 0.800041 | 1.736241e-48 | -8.615850e-47 |
| Msa0455890 | Msa0934100 | 0.813117 | 3.010005e-51 | -8.615850e-47 |
| Msa0455890 | Msa0941410 | 0.806831 | 6.796830e-50 | -8.615850e-47 |
| Msa0455890 | Msa0941420 | 0.800690 | 1.280413e-48 | -8.615850e-47 |
| Msa0455890 | Msa0958960 | 0.831924 | 1.266817e-55 | -8.615850e-47 |
| Msa0455890 | Msa0978540 | 0.820013 | 8.582451e-53 | -8.615850e-47 |
| Msa0455890 | Msa0985570 | 0.800880 | 1.170846e-48 | -8.615850e-47 |
| Msa0455890 | Msa0995130 | 0.830939 | 2.213734e-55 | -8.615850e-47 |
| Msa0455890 | Msa1022590 | 0.828736 | 7.615714e-55 | -8.615850e-47 |
| Msa0455890 | Msa1031190 | 0.800432 | 1.445600e-48 | -8.615850e-47 |
| Msa0455890 | Msa1032410 | 0.808284 | 3.340096e-50 | -8.615850e-47 |
| Msa0455890 | Msa1033250 | 0.802713 | 4.922550e-49 | -8.615850e-47 |
| Msa0455890 | Msa1037440 | 0.806156 | 9.430276e-50 | -8.615850e-47 |
| Msa0455890 | Msa1045750 | 0.804751 | 1.858882e-49 | -8.615850e-47 |
| Msa0455890 | Msa1061420 | 0.803508 | 3.370974e-49 | -8.615850e-47 |
| Msa0455890 | Msa1095880 | 0.813795 | 2.136213e-51 | -8.615850e-47 |
| Msa0455890 | Msa1163230 | 0.801367 | 9.311385e-49 | -8.615850e-47 |
| Msa0455890 | Msa1203320 | 0.806449 | 8.183478e-50 | -8.615850e-47 |
| Msa0455890 | Msa1206500 | 0.834881 | 2.319709e-56 | -8.615850e-47 |
| Msa0455890 | Msa1208630 | 0.808196 | 3.487626e-50 | -8.615850e-47 |
| Msa0455890 | Msa1244770 | 0.800533 | 1.378484e-48 | -8.615850e-47 |
| Msa0455890 | Msa1266750 | 0.810423 | 1.161052e-50 | -8.615850e-47 |
| Msa0455890 | Msa1280520 | 0.807840 | 4.152898e-50 | -8.615850e-47 |
| Msa0455890 | Msa1297550 | 0.815047 | 1.129248e-51 | -8.615850e-47 |
| Msa0455890 | Msa1298180 | 0.828824 | 7.250388e-55 | -8.615850e-47 |
| Msa0455890 | Msa1303690 | 0.802014 | 6.859858e-49 | -8.615850e-47 |
| Msa0455890 | Msa1312800 | 0.831281 | 1.824576e-55 | -8.615850e-47 |
| Msa0455890 | Msa1312840 | 0.841494 | 4.593251e-58 | -8.615850e-47 |
| Msa0455890 | Msa1325260 | 0.816160 | 6.381687e-52 | -8.615850e-47 |
| Msa0455890 | Msa1330080 | 0.834948 | 2.230584e-56 | -8.615850e-47 |
| Msa0455890 | Msa1349720 | 0.803384 | 3.576935e-49 | -8.615850e-47 |
| Msa0455890 | Msa1363170 | 0.802859 | 4.592627e-49 | -8.615850e-47 |
| Msa0455890 | Msa1375120 | 0.815695 | 8.102899e-52 | -8.615850e-47 |
| Msa0455890 | Msa1375570 | 0.841252 | 5.317639e-58 | -8.615850e-47 |
| Msa0455890 | Msa1375650 | 0.814723 | 1.332025e-51 | -8.615850e-47 |
| Msa0455890 | Msa1388010 | 0.814753 | 1.311878e-51 | -8.615850e-47 |
| Msa0455890 | Msa1400830 | 0.804410 | 2.188914e-49 | -8.615850e-47 |
| Msa0455890 | Msa1403590 | 0.812315 | 4.509898e-51 | -8.615850e-47 |
| Msa0455890 | Msa1411390 | 0.813197 | 2.891136e-51 | -8.615850e-47 |
| Msa0455890 | Msa1429180 | 0.812023 | 5.223061e-51 | -8.615850e-47 |
| Msa0455890 | Msa1439880 | 0.814200 | 1.738932e-51 | -8.615850e-47 |
| Msa0455890 | Msa1443280 | 0.807359 | 5.252746e-50 | -8.615850e-47 |
| Msa0455890 | Msa1455560 | 0.805021 | 1.632332e-49 | -8.615850e-47 |
| Msa0455890 | Msa1462700 | 0.829852 | 4.082119e-55 | -8.615850e-47 |
| Msa0256590 | Msa0455890 | 0.840364 | 9.092542e-58 | -8.615850e-47 |
| Msa0259570 | Msa0455890 | 0.801319 | 9.524806e-49 | -8.615850e-47 |
| Msa0270230 | Msa0455890 | 0.808301 | 3.312523e-50 | -8.615850e-47 |
| Msa0288350 | Msa0455890 | 0.811622 | 6.384582e-51 | -8.615850e-47 |
| Msa0292060 | Msa0455890 | 0.806560 | 7.751227e-50 | -8.615850e-47 |
| Msa0307820 | Msa0455890 | 0.817388 | 3.384569e-52 | -8.615850e-47 |
| Msa0311910 | Msa0455890 | 0.832743 | 7.941836e-56 | -8.615850e-47 |
| Msa0322480 | Msa0455890 | 0.835828 | 1.337194e-56 | -8.615850e-47 |
| Msa0346050 | Msa0455890 | 0.827392 | 1.604711e-54 | -8.615850e-47 |
| Msa0347280 | Msa0455890 | 0.811832 | 5.748708e-51 | -8.615850e-47 |
| Msa0363090 | Msa0455890 | 0.812970 | 3.242963e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455890 | MtrunA17_Chr3g0102841 | 86.916 | 214 | 10 | 2 | 19 | 214 | 1 | 214 | 5.95e-131 | 367 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455890 | AT4G26555.1 | 56.039 | 207 | 59 | 5 | 25 | 205 | 7 | 207 | 4.40e-66 | 202 |
| Msa0455890 | AT4G26555.2 | 63.975 | 161 | 39 | 3 | 64 | 205 | 1 | 161 | 2.27e-62 | 191 |
| Msa0455890 | AT4G26555.3 | 53.750 | 160 | 56 | 4 | 25 | 172 | 7 | 160 | 2.98e-46 | 151 |
Find 60 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCCTTCTATTTCTTTA+TGG | 0.076028 | 3_3:-48978741 | None:intergenic |
| CAGCATACATCCTCAGATTT+TGG | 0.203686 | 3_3:+48978836 | Msa0455890:three_prime_UTR |
| AAAATCATTGTTTCCTTCTA+TGG | 0.208942 | 3_3:-48978712 | None:intergenic |
| TAAAACTCCCATTCTCAATT+TGG | 0.216281 | 3_3:-48976515 | None:intergenic |
| ATCTTATGCTTCTCCTGCTT+TGG | 0.268714 | 3_3:+48976824 | Msa0455890:CDS |
| AAGGTTGATTGTTCAGTTTA+TGG | 0.276118 | 3_3:+48976785 | Msa0455890:CDS |
| TTTGTCCGAAACATTGTAAT+TGG | 0.287441 | 3_3:-48978960 | None:intergenic |
| CAGACAAACCTTATGACTTC+TGG | 0.332375 | 3_3:-48976873 | None:intergenic |
| AGGTTGATTGTTCAGTTTAT+GGG | 0.336096 | 3_3:+48976786 | Msa0455890:CDS |
| TTCTCATGCTCAAGAACCTT+TGG | 0.349070 | 3_3:+48978552 | Msa0455890:CDS |
| AGAAGCACACGGTGGAGATT+TGG | 0.360991 | 3_3:+48977555 | Msa0455890:CDS |
| GATTACTTTCTCCATTGAAT+TGG | 0.366396 | 3_3:-48977780 | None:intergenic |
| AAAATAACGTGGTGCACATT+TGG | 0.367542 | 3_3:+48978870 | Msa0455890:three_prime_UTR |
| AAATCTCCACCGTGTGCTTC+TGG | 0.376876 | 3_3:-48977553 | None:intergenic |
| CCTTGCCAATTACAATGTTT+CGG | 0.386306 | 3_3:+48978955 | Msa0455890:three_prime_UTR |
| GTGTTAGATAGAATGGAAAT+TGG | 0.386944 | 3_3:+48978776 | Msa0455890:three_prime_UTR |
| TCATCCAGAGGAAGTATAAC+AGG | 0.388887 | 3_3:-48977802 | None:intergenic |
| TGCTTTGGCTGCACCAATCA+TGG | 0.393966 | 3_3:+48976839 | Msa0455890:CDS |
| GGTTCATTCATGTCCATGAT+TGG | 0.398655 | 3_3:-48976852 | None:intergenic |
| CAGAGCTGTGTTAGATAGAA+TGG | 0.412111 | 3_3:+48978769 | Msa0455890:three_prime_UTR |
| TTGTACCGTTTACGAAATCT+TGG | 0.413700 | 3_3:+48978930 | Msa0455890:three_prime_UTR |
| TAATCCTGTTATACTTCCTC+TGG | 0.433615 | 3_3:+48977798 | Msa0455890:CDS |
| GCTAGTGGAGTGAGAATTCA+AGG | 0.450122 | 3_3:+48976998 | Msa0455890:CDS |
| TGATCTTCTAAGACCATAGA+AGG | 0.453324 | 3_3:+48978699 | Msa0455890:three_prime_UTR |
| ACTTCCTTCCAAATTGAGAA+TGG | 0.457588 | 3_3:+48976507 | Msa0455890:CDS |
| AAGGGCATTGATTCCACCTT+CGG | 0.461387 | 3_3:+48978240 | Msa0455890:CDS |
| CTTCCTTCCAAATTGAGAAT+GGG | 0.464378 | 3_3:+48976508 | Msa0455890:CDS |
| AAAGAAATAGAAGGGTGATC+AGG | 0.466408 | 3_3:+48978745 | Msa0455890:three_prime_UTR |
| GATAGAGATAATGTTCTGCT+TGG | 0.476237 | 3_3:+48976466 | None:intergenic |
| ATGATTGGTGCAGCCAAAGC+AGG | 0.489354 | 3_3:-48976837 | None:intergenic |
| AGGCACCAAGATTTCGTAAA+CGG | 0.494130 | 3_3:-48978935 | None:intergenic |
| TGTGTATGCAGGCGTGCAAA+TGG | 0.496678 | 3_3:+48977589 | Msa0455890:CDS |
| TGAATGAACCAGAAGTCATA+AGG | 0.510966 | 3_3:+48976865 | Msa0455890:CDS |
| TTGAATTCAATTGTGTATGC+AGG | 0.514249 | 3_3:+48977578 | Msa0455890:CDS |
| ACTTCCTCTGGATGAGGACC+AGG | 0.515288 | 3_3:+48977810 | Msa0455890:CDS |
| TAATTAAATTCAGATTGTTG+TGG | 0.522164 | 3_3:-48978610 | None:intergenic |
| GAGAAAGAAGGCTGCGTCGA+GGG | 0.529313 | 3_3:-48978534 | None:intergenic |
| AGTACAGTAGACCAATTCAA+TGG | 0.540259 | 3_3:+48977769 | Msa0455890:intron |
| CTAATTGCAGCCAAAATCTG+AGG | 0.543159 | 3_3:-48978846 | None:intergenic |
| ACTCCCATTCTCAATTTGGA+AGG | 0.554025 | 3_3:-48976511 | None:intergenic |
| GTTCTTGAGCATGAGAAAGA+AGG | 0.555035 | 3_3:-48978546 | None:intergenic |
| TTGACTGGCATGAGAGTTGG+TGG | 0.558293 | 3_3:+48978006 | Msa0455890:CDS |
| TGTTATACTTCCTCTGGATG+AGG | 0.558694 | 3_3:+48977804 | Msa0455890:CDS |
| GTGGTGCACATTTGGTATCA+TGG | 0.562972 | 3_3:+48978878 | Msa0455890:three_prime_UTR |
| CTTCTGTCTCTGCTTCTCCA+AGG | 0.563049 | 3_3:+48976566 | Msa0455890:CDS |
| CTTCACTTGTAGGAAAGAGA+AGG | 0.564330 | 3_3:+48978221 | Msa0455890:intron |
| TCTACATATCCTACCGAAGG+TGG | 0.578764 | 3_3:-48978253 | None:intergenic |
| GCAGAGACAGAAGCAGTACA+TGG | 0.579132 | 3_3:-48976556 | None:intergenic |
| GAGAAGCATAAGATAATATG+TGG | 0.584765 | 3_3:-48976815 | None:intergenic |
| CCGAAACATTGTAATTGGCA+AGG | 0.586591 | 3_3:-48978955 | None:intergenic |
| TTCACTTGTAGGAAAGAGAA+GGG | 0.601750 | 3_3:+48978222 | Msa0455890:intron |
| TCATGAATCCAGGTGCATTG+AGG | 0.610560 | 3_3:+48976704 | Msa0455890:intron |
| AGGACTTTGAAGCTAGCTAG+TGG | 0.614785 | 3_3:+48976983 | Msa0455890:intron |
| AGTTGAACTTCAAATACCAA+AGG | 0.622539 | 3_3:-48978568 | None:intergenic |
| TGGAAGGAAGTTCACAACAC+AGG | 0.642964 | 3_3:-48976495 | None:intergenic |
| TGAGAAAGAAGGCTGCGTCG+AGG | 0.648007 | 3_3:-48978535 | None:intergenic |
| GAGACAGAAGCAGTACATGG+TGG | 0.649197 | 3_3:-48976553 | None:intergenic |
| CTAACCTGGTCCTCATCCAG+AGG | 0.693869 | 3_3:-48977814 | None:intergenic |
| GGGGAAGGACCAGAAGCACA+CGG | 0.698408 | 3_3:+48977544 | Msa0455890:intron |
| GAAGGACCAGAAGCACACGG+TGG | 0.720520 | 3_3:+48977547 | Msa0455890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTCTTTTAATCAAAA+GGG | - | chr3_3:48977453-48977472 | None:intergenic | 10.0% |
| !! | TTCATAATATGAATTAATAA+TGG | + | chr3_3:48977632-48977651 | Msa0455890:intron | 10.0% |
| !! | TCATAATATGAATTAATAAT+GGG | + | chr3_3:48977633-48977652 | Msa0455890:intron | 10.0% |
| !! | AAACAAATAGATAATATAAA+GGG | - | chr3_3:48977948-48977967 | None:intergenic | 10.0% |
| !! | ATTGAAATGAATAATTATAG+GGG | - | chr3_3:48976604-48976623 | None:intergenic | 15.0% |
| !! | GATTGAAATGAATAATTATA+GGG | - | chr3_3:48976605-48976624 | None:intergenic | 15.0% |
| !!! | AAAAGCATGATATTATTTTT+AGG | - | chr3_3:48976646-48976665 | None:intergenic | 15.0% |
| !!! | CTTAATTTCTTTTAATCAAA+AGG | - | chr3_3:48977454-48977473 | None:intergenic | 15.0% |
| !! | AACAAATAGATAATATAAAG+GGG | - | chr3_3:48977947-48977966 | None:intergenic | 15.0% |
| !! | CAAACAAATAGATAATATAA+AGG | - | chr3_3:48977949-48977968 | None:intergenic | 15.0% |
| !!! | TTTTTTAAATCAGATGATAT+TGG | + | chr3_3:48977969-48977988 | Msa0455890:intron | 15.0% |
| !!! | TTTTTAAATCAGATGATATT+GGG | + | chr3_3:48977970-48977989 | Msa0455890:intron | 15.0% |
| !! | GGATTGAAATGAATAATTAT+AGG | - | chr3_3:48976606-48976625 | None:intergenic | 20.0% |
| !! | ACAAATAGATAATATAAAGG+GGG | - | chr3_3:48977946-48977965 | None:intergenic | 20.0% |
| !!! | TTTTAAATCAGATGATATTG+GGG | + | chr3_3:48977971-48977990 | Msa0455890:intron | 20.0% |
| !! | ATATATATGAAAATCATGAG+AGG | - | chr3_3:48978077-48978096 | None:intergenic | 20.0% |
| !!! | TAAAATGATTCATGTCATTT+TGG | + | chr3_3:48978106-48978125 | Msa0455890:intron | 20.0% |
| !! | TAAAATGTTATGTTAGTAGT+TGG | + | chr3_3:48978367-48978386 | Msa0455890:intron | 20.0% |
| !! | TAATTAAATTCAGATTGTTG+TGG | - | chr3_3:48978613-48978632 | None:intergenic | 20.0% |
| !!! | TTTTATTTTCTTCTGTCAAT+TGG | + | chr3_3:48978640-48978659 | Msa0455890:three_prime_UTR | 20.0% |
| !!! | TTTTTCCATAAAGAAATAGA+AGG | + | chr3_3:48978736-48978755 | Msa0455890:three_prime_UTR | 20.0% |
| !!! | TTTTCCATAAAGAAATAGAA+GGG | + | chr3_3:48978737-48978756 | Msa0455890:three_prime_UTR | 20.0% |
| !!! | GCATGATATTATTTTTAGGA+AGG | - | chr3_3:48976642-48976661 | None:intergenic | 25.0% |
| ! | CGAAAAAATATTGTTCAAGA+AGG | + | chr3_3:48976766-48976785 | Msa0455890:CDS | 25.0% |
| !!! | TATTTTTATGTGAAGCATCT+AGG | + | chr3_3:48976963-48976982 | Msa0455890:intron | 25.0% |
| ! | CACAATTTAAACACACAATA+AGG | - | chr3_3:48977174-48977193 | None:intergenic | 25.0% |
| ! | CTTATTGTGTGTTTAAATTG+TGG | + | chr3_3:48977172-48977191 | Msa0455890:intron | 25.0% |
| ! | ATACTGTCATACAATATGAT+CGG | - | chr3_3:48977308-48977327 | None:intergenic | 25.0% |
| ! | TTCAAATTAGTTGTTACTGA+AGG | + | chr3_3:48977523-48977542 | Msa0455890:intron | 25.0% |
| ! | TCAAATTAGTTGTTACTGAA+GGG | + | chr3_3:48977524-48977543 | Msa0455890:intron | 25.0% |
| ! | TTGAAAGAAATAAACTAACC+TGG | - | chr3_3:48977831-48977850 | None:intergenic | 25.0% |
| !! | AGTTTATTTCTTTCAACTTG+TGG | + | chr3_3:48977835-48977854 | Msa0455890:intron | 25.0% |
| !! | GTTTATTTCTTTCAACTTGT+GGG | + | chr3_3:48977836-48977855 | Msa0455890:intron | 25.0% |
| ! | AAATTATACATGTATGCCAA+AGG | - | chr3_3:48978138-48978157 | None:intergenic | 25.0% |
| ! | ATTTCGACACACAAAAAAAA+AGG | - | chr3_3:48978168-48978187 | None:intergenic | 25.0% |
| !! | TTTTTGTGTTTATTGCAGTT+TGG | + | chr3_3:48978511-48978530 | Msa0455890:intron | 25.0% |
| ! | AAAATCATTGTTTCCTTCTA+TGG | - | chr3_3:48978715-48978734 | None:intergenic | 25.0% |
| !! | TAGTTTTTGCAGGATTATAA+CGG | - | chr3_3:48978908-48978927 | None:intergenic | 25.0% |
| TAAAACTCCCATTCTCAATT+TGG | - | chr3_3:48976518-48976537 | None:intergenic | 30.0% | |
| ! | AAGGTTGATTGTTCAGTTTA+TGG | + | chr3_3:48976785-48976804 | Msa0455890:CDS | 30.0% |
| ! | AGGTTGATTGTTCAGTTTAT+GGG | + | chr3_3:48976786-48976805 | Msa0455890:CDS | 30.0% |
| ! | GAGAAGCATAAGATAATATG+TGG | - | chr3_3:48976818-48976837 | None:intergenic | 30.0% |
| AACCTTGAGATCAGATTTAT+TGG | + | chr3_3:48977103-48977122 | Msa0455890:intron | 30.0% | |
| ATCCAATAAATCTGATCTCA+AGG | - | chr3_3:48977108-48977127 | None:intergenic | 30.0% | |
| GTGTGTTTAAATTGTGGTTA+CGG | + | chr3_3:48977178-48977197 | Msa0455890:intron | 30.0% | |
| TTTGCACTTCTATTTGAAAG+AGG | - | chr3_3:48977375-48977394 | None:intergenic | 30.0% | |
| ! | CAAATAGAAGTGCAAATTCT+TGG | + | chr3_3:48977379-48977398 | Msa0455890:intron | 30.0% |
| AAGGGTAAGTAAAATGCATA+AGG | - | chr3_3:48977435-48977454 | None:intergenic | 30.0% | |
| CAAATTAGTTGTTACTGAAG+GGG | + | chr3_3:48977525-48977544 | Msa0455890:intron | 30.0% | |
| TTGAATTCAATTGTGTATGC+AGG | + | chr3_3:48977578-48977597 | Msa0455890:CDS | 30.0% | |
| !!! | CAAATGGATACTTTGTTTTC+AGG | + | chr3_3:48977605-48977624 | Msa0455890:CDS | 30.0% |
| TTGACTTAAGCACAATACAA+GGG | - | chr3_3:48977703-48977722 | None:intergenic | 30.0% | |
| ! | ATTGACTTAAGCACAATACA+AGG | - | chr3_3:48977704-48977723 | None:intergenic | 30.0% |
| GATTACTTTCTCCATTGAAT+TGG | - | chr3_3:48977783-48977802 | None:intergenic | 30.0% | |
| ! | TGTATCTTTTGATGTCATTG+TGG | + | chr3_3:48978188-48978207 | Msa0455890:intron | 30.0% |
| AGTTGAACTTCAAATACCAA+AGG | - | chr3_3:48978571-48978590 | None:intergenic | 30.0% | |
| ! | ATCACCCTTCTATTTCTTTA+TGG | - | chr3_3:48978744-48978763 | None:intergenic | 30.0% |
| GTGTTAGATAGAATGGAAAT+TGG | + | chr3_3:48978776-48978795 | Msa0455890:three_prime_UTR | 30.0% | |
| TGGAAATTGGAAAATGTTTG+AGG | + | chr3_3:48978789-48978808 | Msa0455890:intron | 30.0% | |
| AATTGGAAAATGTTTGAGGA+AGG | + | chr3_3:48978793-48978812 | Msa0455890:intron | 30.0% | |
| CTGCAATTAGAAAAATAACG+TGG | + | chr3_3:48978859-48978878 | Msa0455890:three_prime_UTR | 30.0% | |
| TTTGTCCGAAACATTGTAAT+TGG | - | chr3_3:48978963-48978982 | None:intergenic | 30.0% | |
| ACTTCCTTCCAAATTGAGAA+TGG | + | chr3_3:48976507-48976526 | Msa0455890:CDS | 35.0% | |
| CTTCCTTCCAAATTGAGAAT+GGG | + | chr3_3:48976508-48976527 | Msa0455890:CDS | 35.0% | |
| AGGGGAAACAATTTATACCT+TGG | - | chr3_3:48976586-48976605 | None:intergenic | 35.0% | |
| TAGGAAGGAAGTGAGATAAA+TGG | - | chr3_3:48976627-48976646 | None:intergenic | 35.0% | |
| CTTAAAACTCTCATGAATCC+AGG | + | chr3_3:48976694-48976713 | Msa0455890:intron | 35.0% | |
| TGAATGAACCAGAAGTCATA+AGG | + | chr3_3:48976865-48976884 | Msa0455890:CDS | 35.0% | |
| !!! | GTCAGTCATTTTTGATGCAA+AGG | + | chr3_3:48977132-48977151 | Msa0455890:intron | 35.0% |
| GTATGAAACCAAGCAACATT+AGG | - | chr3_3:48977736-48977755 | None:intergenic | 35.0% | |
| AGTACAGTAGACCAATTCAA+TGG | + | chr3_3:48977769-48977788 | Msa0455890:intron | 35.0% | |
| TAATCCTGTTATACTTCCTC+TGG | + | chr3_3:48977798-48977817 | Msa0455890:CDS | 35.0% | |
| AAACACATTTCAGAGTTCTC+TGG | - | chr3_3:48977864-48977883 | None:intergenic | 35.0% | |
| TATTAGCATGCCGTAATCTT+CGG | + | chr3_3:48977919-48977938 | Msa0455890:intron | 35.0% | |
| AAAATCATGAGAGGAAAGAC+TGG | - | chr3_3:48978068-48978087 | None:intergenic | 35.0% | |
| ATACATGTATGCCAAAGGTT+TGG | - | chr3_3:48978133-48978152 | None:intergenic | 35.0% | |
| TTCACTTGTAGGAAAGAGAA+GGG | + | chr3_3:48978222-48978241 | Msa0455890:intron | 35.0% | |
| TAGTCTAGCACTTGATACAA+AGG | + | chr3_3:48978306-48978325 | Msa0455890:intron | 35.0% | |
| !! | TGATCTTCTAAGACCATAGA+AGG | + | chr3_3:48978699-48978718 | Msa0455890:three_prime_UTR | 35.0% |
| AAAGAAATAGAAGGGTGATC+AGG | + | chr3_3:48978745-48978764 | Msa0455890:three_prime_UTR | 35.0% | |
| AAAATAACGTGGTGCACATT+TGG | + | chr3_3:48978870-48978889 | Msa0455890:three_prime_UTR | 35.0% | |
| TTGTACCGTTTACGAAATCT+TGG | + | chr3_3:48978930-48978949 | Msa0455890:three_prime_UTR | 35.0% | |
| CCTTGCCAATTACAATGTTT+CGG | + | chr3_3:48978955-48978974 | Msa0455890:three_prime_UTR | 35.0% | |
| ACTCCCATTCTCAATTTGGA+AGG | - | chr3_3:48976514-48976533 | None:intergenic | 40.0% | |
| ATCTTATGCTTCTCCTGCTT+TGG | + | chr3_3:48976824-48976843 | Msa0455890:CDS | 40.0% | |
| GGTTCATTCATGTCCATGAT+TGG | - | chr3_3:48976855-48976874 | None:intergenic | 40.0% | |
| CAGACAAACCTTATGACTTC+TGG | - | chr3_3:48976876-48976895 | None:intergenic | 40.0% | |
| ! | TGCTAGGGTATCACATATCA+AGG | - | chr3_3:48977216-48977235 | None:intergenic | 40.0% |
| ! | GCATACACTGCATTTTGCTA+GGG | - | chr3_3:48977231-48977250 | None:intergenic | 40.0% |
| CTAGCAAAATGCAGTGTATG+CGG | + | chr3_3:48977230-48977249 | Msa0455890:intron | 40.0% | |
| GGTCAATTTGGTTGCAATTG+TGG | + | chr3_3:48977251-48977270 | Msa0455890:intron | 40.0% | |
| TTAGTTGTTACTGAAGGGGA+AGG | + | chr3_3:48977529-48977548 | Msa0455890:intron | 40.0% | |
| ACTACTGTCCTAATGTTGCT+TGG | + | chr3_3:48977725-48977744 | Msa0455890:intron | 40.0% | |
| ! | TCATCCAGAGGAAGTATAAC+AGG | - | chr3_3:48977805-48977824 | None:intergenic | 40.0% |
| TGTTATACTTCCTCTGGATG+AGG | + | chr3_3:48977804-48977823 | Msa0455890:CDS | 40.0% | |
| !! | GGGTTAAAGCAAGTTTTGAC+TGG | + | chr3_3:48977991-48978010 | Msa0455890:CDS | 40.0% |
| !! | GTCATTTTGGTCCAAACCTT+TGG | + | chr3_3:48978119-48978138 | Msa0455890:intron | 40.0% |
| CTTCACTTGTAGGAAAGAGA+AGG | + | chr3_3:48978221-48978240 | Msa0455890:intron | 40.0% | |
| AGACTAACCTCTTCAGGTAT+CGG | - | chr3_3:48978292-48978311 | None:intergenic | 40.0% | |
| ACCACTTCAGCTATGTAACA+AGG | + | chr3_3:48978439-48978458 | Msa0455890:intron | 40.0% | |
| TCCTTGTTACATAGCTGAAG+TGG | - | chr3_3:48978443-48978462 | None:intergenic | 40.0% | |
| GTTCTTGAGCATGAGAAAGA+AGG | - | chr3_3:48978549-48978568 | None:intergenic | 40.0% | |
| TTCTCATGCTCAAGAACCTT+TGG | + | chr3_3:48978552-48978571 | Msa0455890:CDS | 40.0% | |
| CAGAGCTGTGTTAGATAGAA+TGG | + | chr3_3:48978769-48978788 | Msa0455890:three_prime_UTR | 40.0% | |
| TGGAAAATGTTTGAGGAAGG+TGG | + | chr3_3:48978796-48978815 | Msa0455890:intron | 40.0% | |
| ! | CAGCATACATCCTCAGATTT+TGG | + | chr3_3:48978836-48978855 | Msa0455890:three_prime_UTR | 40.0% |
| CTAATTGCAGCCAAAATCTG+AGG | - | chr3_3:48978849-48978868 | None:intergenic | 40.0% | |
| ! | CGGTACAATGTAGTTTTTGC+AGG | - | chr3_3:48978918-48978937 | None:intergenic | 40.0% |
| AGGCACCAAGATTTCGTAAA+CGG | - | chr3_3:48978938-48978957 | None:intergenic | 40.0% | |
| CCGAAACATTGTAATTGGCA+AGG | - | chr3_3:48978958-48978977 | None:intergenic | 40.0% | |
| TGGAAGGAAGTTCACAACAC+AGG | - | chr3_3:48976498-48976517 | None:intergenic | 45.0% | |
| TCATGAATCCAGGTGCATTG+AGG | + | chr3_3:48976704-48976723 | Msa0455890:intron | 45.0% | |
| !! | AGGACTTTGAAGCTAGCTAG+TGG | + | chr3_3:48976983-48977002 | Msa0455890:intron | 45.0% |
| GCTAGTGGAGTGAGAATTCA+AGG | + | chr3_3:48976998-48977017 | Msa0455890:CDS | 45.0% | |
| ! | CGCATACACTGCATTTTGCT+AGG | - | chr3_3:48977232-48977251 | None:intergenic | 45.0% |
| TGCAGTGTATGCGGTCAATT+TGG | + | chr3_3:48977239-48977258 | Msa0455890:intron | 45.0% | |
| TAAAGGGGGACCGAAGATTA+CGG | - | chr3_3:48977932-48977951 | None:intergenic | 45.0% | |
| !!! | GTTTTGACTGGCATGAGAGT+TGG | + | chr3_3:48978003-48978022 | Msa0455890:CDS | 45.0% |
| AGAGGAAAGACTGGTATGTG+AGG | - | chr3_3:48978059-48978078 | None:intergenic | 45.0% | |
| GATGTCATTGTGGTCACTCT+TGG | + | chr3_3:48978198-48978217 | Msa0455890:intron | 45.0% | |
| TCACTCTTGGCTTCACTTGT+AGG | + | chr3_3:48978211-48978230 | Msa0455890:intron | 45.0% | |
| !! | AAGGGCATTGATTCCACCTT+CGG | + | chr3_3:48978240-48978259 | Msa0455890:CDS | 45.0% |
| TCTACATATCCTACCGAAGG+TGG | - | chr3_3:48978256-48978275 | None:intergenic | 45.0% | |
| TCGTCTACATATCCTACCGA+AGG | - | chr3_3:48978259-48978278 | None:intergenic | 45.0% | |
| AGTGCTAGACTAACCTCTTC+AGG | - | chr3_3:48978298-48978317 | None:intergenic | 45.0% | |
| GTGGTGCACATTTGGTATCA+TGG | + | chr3_3:48978878-48978897 | Msa0455890:three_prime_UTR | 45.0% | |
| GAGACAGAAGCAGTACATGG+TGG | - | chr3_3:48976556-48976575 | None:intergenic | 50.0% | |
| GCAGAGACAGAAGCAGTACA+TGG | - | chr3_3:48976559-48976578 | None:intergenic | 50.0% | |
| CTTCTGTCTCTGCTTCTCCA+AGG | + | chr3_3:48976566-48976585 | Msa0455890:CDS | 50.0% | |
| GTTTGCATCCTCAATGCACC+TGG | - | chr3_3:48976715-48976734 | None:intergenic | 50.0% | |
| ATGATTGGTGCAGCCAAAGC+AGG | - | chr3_3:48976840-48976859 | None:intergenic | 50.0% | |
| TGCTTTGGCTGCACCAATCA+TGG | + | chr3_3:48976839-48976858 | Msa0455890:CDS | 50.0% | |
| AAATCTCCACCGTGTGCTTC+TGG | - | chr3_3:48977556-48977575 | None:intergenic | 50.0% | |
| ! | AGAAGCACACGGTGGAGATT+TGG | + | chr3_3:48977555-48977574 | Msa0455890:CDS | 50.0% |
| TGTGTATGCAGGCGTGCAAA+TGG | + | chr3_3:48977589-48977608 | Msa0455890:CDS | 50.0% | |
| TTGACTGGCATGAGAGTTGG+TGG | + | chr3_3:48978006-48978025 | Msa0455890:CDS | 50.0% | |
| !! | GCATTGATTCCACCTTCGGT+AGG | + | chr3_3:48978244-48978263 | Msa0455890:intron | 50.0% |
| CTTGAAGCCGATACCTGAAG+AGG | + | chr3_3:48978282-48978301 | Msa0455890:intron | 50.0% | |
| ACTTCCTCTGGATGAGGACC+AGG | + | chr3_3:48977810-48977829 | Msa0455890:CDS | 55.0% | |
| CTAACCTGGTCCTCATCCAG+AGG | - | chr3_3:48977817-48977836 | None:intergenic | 55.0% | |
| GAGAAAGAAGGCTGCGTCGA+GGG | - | chr3_3:48978537-48978556 | None:intergenic | 55.0% | |
| TGAGAAAGAAGGCTGCGTCG+AGG | - | chr3_3:48978538-48978557 | None:intergenic | 55.0% | |
| ! | GGGGAAGGACCAGAAGCACA+CGG | + | chr3_3:48977544-48977563 | Msa0455890:intron | 60.0% |
| ! | GAAGGACCAGAAGCACACGG+TGG | + | chr3_3:48977547-48977566 | Msa0455890:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 48976472 | 48979070 | 48976472 | ID=Msa0455890;Name=Msa0455890 |
| chr3_3 | mRNA | 48976472 | 48979070 | 48976472 | ID=Msa0455890-mRNA-1;Parent=Msa0455890;Name=Msa0455890-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.88|0.8|1|0.66|0.6|10|383|214 |
| chr3_3 | exon | 48976472 | 48976587 | 48976472 | ID=Msa0455890-mRNA-1:exon:9213;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48976716 | 48976886 | 48976716 | ID=Msa0455890-mRNA-1:exon:9214;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48976985 | 48977019 | 48976985 | ID=Msa0455890-mRNA-1:exon:9215;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48977545 | 48977626 | 48977545 | ID=Msa0455890-mRNA-1:exon:9216;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48977771 | 48977831 | 48977771 | ID=Msa0455890-mRNA-1:exon:9217;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48977982 | 48978027 | 48977982 | ID=Msa0455890-mRNA-1:exon:9218;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48978233 | 48978261 | 48978233 | ID=Msa0455890-mRNA-1:exon:9219;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48978529 | 48978660 | 48978529 | ID=Msa0455890-mRNA-1:exon:9220;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48978683 | 48978796 | 48978683 | ID=Msa0455890-mRNA-1:exon:9221;Parent=Msa0455890-mRNA-1 |
| chr3_3 | exon | 48978829 | 48979070 | 48978829 | ID=Msa0455890-mRNA-1:exon:9222;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48976472 | 48976587 | 48976472 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48976716 | 48976886 | 48976716 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48976985 | 48977019 | 48976985 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48977545 | 48977626 | 48977545 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48977771 | 48977831 | 48977771 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48977982 | 48978027 | 48977982 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48978233 | 48978261 | 48978233 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | CDS | 48978529 | 48978633 | 48978529 | ID=Msa0455890-mRNA-1:cds;Parent=Msa0455890-mRNA-1 |
| chr3_3 | three_prime_UTR | 48978634 | 48978660 | 48978634 | ID=Msa0455890-mRNA-1:three_prime_utr;Parent=Msa0455890-mRNA-1 |
| chr3_3 | three_prime_UTR | 48978683 | 48978796 | 48978683 | ID=Msa0455890-mRNA-1:three_prime_utr;Parent=Msa0455890-mRNA-1 |
| chr3_3 | three_prime_UTR | 48978829 | 48979070 | 48978829 | ID=Msa0455890-mRNA-1:three_prime_utr;Parent=Msa0455890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
