AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077990 MtrunA17_Chr1g0188121 98.529 340 5 0 1 340 1 340 0.0 696
Msa0077990 MtrunA17_Chr1g0184951 76.945 347 73 2 1 340 1 347 7.80e-177 494
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077990 AT3G63410.1 76.522 345 69 4 1 340 1 338 5.42e-180 501

Find 134 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGAACATTGTTTATT+TGG 0.134864 1_2:-55208175 Msa0077990:three_prime_UTR
AACACAAGAAAGAAGCATTT+TGG 0.213825 1_2:-55210193 Msa0077990:CDS
AGCTAAGGAGTTGTGGAATA+TGG 0.218960 1_2:+55210747 None:intergenic
AGCATATAAGCCAAGTTTAT+TGG 0.221137 1_2:-55208128 Msa0077990:three_prime_UTR
GTCCTGTATACCCAACATTT+TGG 0.229561 1_2:-55208832 Msa0077990:CDS
TCTTTAAGCCACATGTAAAT+TGG 0.231207 1_2:+55208419 None:intergenic
CGCACACCGCGATACCATTT+TGG 0.239417 1_2:+55208701 None:intergenic
AGAAACACCAATGGATTTAC+AGG 0.256390 1_2:+55208491 None:intergenic
CTGATTTCTGATTTCATGTC+TGG 0.273349 1_2:-55208078 Msa0077990:three_prime_UTR
TTCAGCACCACTAAGCATTA+AGG 0.275776 1_2:+55210397 None:intergenic
GTATATTGAATGGTTTAAAA+AGG 0.282915 1_2:-55208759 Msa0077990:CDS
TTTCTCTCAAGGCTCATTCT+TGG 0.311957 1_2:-55208473 Msa0077990:CDS
TTCTTGTGTTGGATGAATCT+AGG 0.315559 1_2:+55210206 None:intergenic
TCAATATACTCTTCCTCCTT+AGG 0.315806 1_2:+55208773 None:intergenic
GTTAATTTGTTGACATGTTT+TGG 0.318002 1_2:-55208247 Msa0077990:three_prime_UTR
ATGTCAACAAATTAACATTA+TGG 0.319352 1_2:+55208254 None:intergenic
GCCTGCCCTTTGGAACAATT+TGG 0.321260 1_2:+55208396 None:intergenic
GCATATAGAGTTCTGAAAAT+AGG 0.330673 1_2:-55208875 Msa0077990:CDS
TTTGCAACTGAAATGGAAAA+TGG 0.332120 1_2:+55210533 None:intergenic
ATCAGGCGACTCTCCCCTTC+AGG 0.333951 1_2:-55208630 Msa0077990:intron
GGAGGCAAAGCGTGCATTAT+AGG 0.339249 1_2:-55208854 Msa0077990:CDS
TATAAAAGTGTTAATTTCCT+TGG 0.349879 1_2:-55210457 Msa0077990:five_prime_UTR
TGAAAAGAATAGGTCCAAAA+TGG 0.366680 1_2:-55208715 Msa0077990:CDS
TGTTGTTCAGTATTGAATAC+TGG 0.372308 1_2:-55208925 Msa0077990:intron
GATTAAATACGCCTGCCCTT+TGG 0.378600 1_2:+55208386 None:intergenic
TGTTTATTTGGAGGTTAGTC+AGG 0.380528 1_2:-55208163 Msa0077990:three_prime_UTR
TTGGAGAATCAAGTAAAGTT+GGG 0.387660 1_2:-55208358 Msa0077990:three_prime_UTR
ACTGGTGTCAAACCTTTATC+AGG 0.388260 1_2:-55208647 Msa0077990:CDS
TTACTTAAATTTAAGTGTTA+CGG 0.388621 1_2:-55207888 Msa0077990:three_prime_UTR
AACCAAAATGTTGGGTATAC+AGG 0.392300 1_2:+55208830 None:intergenic
GTGGATGTTGGAGGAGGAAC+TGG 0.396715 1_2:-55210053 Msa0077990:CDS
AGCATAGTTCCATCTGGATT+AGG 0.398282 1_2:-55210356 Msa0077990:CDS
ATTGGAGAATCAAGTAAAGT+TGG 0.403522 1_2:-55208359 Msa0077990:three_prime_UTR
TTTGGAATTTGCAACTGAAA+TGG 0.404023 1_2:+55210526 None:intergenic
TGGTAAGGTACATAATGTTA+TGG 0.407729 1_2:+55210553 None:intergenic
GCGGCGGCACGGCCTCATCA+TGG 0.410184 1_2:-55208681 Msa0077990:CDS
AAAATGCTTCTTTCTTGTGT+TGG 0.410236 1_2:+55210195 None:intergenic
AGGGGAGAGTCGCCTGATAA+AGG 0.412042 1_2:+55208635 None:intergenic
GAATCGTAGTAAAATTTAAG+AGG 0.413419 1_2:+55208212 None:intergenic
GAAATGAGACATGGATGGTT+TGG 0.414913 1_2:+55210508 None:intergenic
CAATATACTCTTCCTCCTTA+GGG 0.416784 1_2:+55208774 None:intergenic
AGAAATAATGCAGTTTCATA+TGG 0.418931 1_2:-55210296 Msa0077990:CDS
TTAATGCCACGCTGTGGATC+AGG 0.419899 1_2:+55208902 None:intergenic
CAGACATGAAATCAGAAATC+AGG 0.420206 1_2:+55208079 None:intergenic
AAAGAATGTAAGATAATTGA+AGG 0.432985 1_2:-55209927 Msa0077990:CDS
ATTAATAGCATAGTTCCATC+TGG 0.434382 1_2:-55210362 Msa0077990:CDS
ATGGCCTCCTTAATGCTTAG+TGG 0.436810 1_2:-55210404 Msa0077990:CDS
GCTAAGGAGTTGTGGAATAT+GGG 0.445649 1_2:+55210748 None:intergenic
CTTTATGTAGCTTGGTCCTA+AGG 0.446738 1_2:-55208531 Msa0077990:intron
TCCGCATAATCAGTTGGAAA+TGG 0.449194 1_2:+55209888 None:intergenic
ATCATGGGTTGTTCTGTCAC+TGG 0.452148 1_2:-55208665 Msa0077990:CDS
GATGTCAAGCTGAAAAGAAT+AGG 0.453690 1_2:-55208725 Msa0077990:CDS
ATTATGGAAGGCAAAGTTCA+TGG 0.458064 1_2:+55208270 None:intergenic
CGGCGGCACGGCCTCATCAT+GGG 0.458451 1_2:-55208680 Msa0077990:CDS
GCGGACCGATATGTTTCTGC+TGG 0.461499 1_2:-55209870 Msa0077990:CDS
TTTGAACATTGTTTATTTGG+AGG 0.466055 1_2:-55208172 Msa0077990:three_prime_UTR
TTATACCTATCCAATAAACT+TGG 0.483592 1_2:+55208118 None:intergenic
GTTTCATATGGTAACAAATA+CGG 0.485582 1_2:-55210284 Msa0077990:CDS
CATCCACAACTCGCATTCTC+CGG 0.485995 1_2:+55210069 None:intergenic
ACCAAATTGTTCCAAAGGGC+AGG 0.486418 1_2:-55208397 Msa0077990:CDS
TATCGCGGTGTGCGGCGGCA+CGG 0.488724 1_2:-55208692 Msa0077990:CDS
ACATGAAAAGCATAGTGTAT+TGG 0.488827 1_2:+55210688 None:intergenic
AGGCGTATTTAATCGAAGAT+TGG 0.490077 1_2:-55208377 Msa0077990:exon
ATGTCTTCAGTCCAGTGACC+TGG 0.491830 1_2:+55210128 None:intergenic
AATTGAGACAACCAAAATGT+TGG 0.493584 1_2:+55208821 None:intergenic
ATTGAGACAACCAAAATGTT+GGG 0.494828 1_2:+55208822 None:intergenic
TTCTGTACATCCTCTACCTT+AGG 0.496880 1_2:+55208515 None:intergenic
AAACTTGGCTTATATGCTGC+AGG 0.498720 1_2:+55208133 None:intergenic
GATAGGTATAAAACATGTGC+TGG 0.500269 1_2:-55208106 Msa0077990:three_prime_UTR
GGAACTGGATTCACTACTCT+TGG 0.502345 1_2:-55210038 Msa0077990:CDS
ATATAATAAATCCAGGTCAC+TGG 0.503119 1_2:-55210139 Msa0077990:CDS
ATAAGCCAAGTTTATTGGAT+AGG 0.503163 1_2:-55208123 Msa0077990:three_prime_UTR
GTCTCCTCATCAGCTGGCTA+AGG 0.507432 1_2:-55209970 Msa0077990:CDS
ACCTTCCAGCAGAAACATAT+CGG 0.509798 1_2:+55209865 None:intergenic
ATCCATTGGTGTTTCTCTCA+AGG 0.513270 1_2:-55208484 Msa0077990:CDS
CTCCGGTCATACAAATCAGC+AGG 0.515409 1_2:+55210086 None:intergenic
CTCAATTCTTTGCAGACATG+TGG 0.515450 1_2:-55208805 Msa0077990:CDS
AGCAATACCTCAGTGGTGAA+TGG 0.518290 1_2:-55210662 Msa0077990:five_prime_UTR
TGATCAGTCTCCTCATCAGC+TGG 0.520456 1_2:-55209976 Msa0077990:CDS
TACATGTGAGTGGTGCTGAT+TGG 0.522534 1_2:+55210616 None:intergenic
TCTGATGATTGATGTTCTCA+AGG 0.524510 1_2:-55208315 Msa0077990:three_prime_UTR
TAAAGACCAAATTGTTCCAA+AGG 0.528009 1_2:-55208402 Msa0077990:CDS
AGCCTGCTGATTTGTATGAC+CGG 0.529953 1_2:-55210088 Msa0077990:CDS
AACTGAAATGGAAAATGGTA+AGG 0.530261 1_2:+55210538 None:intergenic
GCTGGCTAAGGCTAAGAAGA+AGG 0.533762 1_2:-55209958 Msa0077990:CDS
TATGATCATATAATAAATCC+AGG 0.542176 1_2:-55210146 Msa0077990:CDS
AAAGACCAAATTGTTCCAAA+GGG 0.542862 1_2:-55208401 Msa0077990:CDS
ACCGATATGTTTCTGCTGGA+AGG 0.544245 1_2:-55209866 Msa0077990:intron
TCCATTTCCAACTGATTATG+CGG 0.544265 1_2:-55209889 Msa0077990:CDS
CATGTGGATGCTCTTCCCTA+AGG 0.545532 1_2:-55208789 Msa0077990:CDS
AAAATTTGTGAAGATATGTC+TGG 0.548237 1_2:-55210776 Msa0077990:five_prime_UTR
CACCACTCACATGTATTATG+TGG 0.551164 1_2:-55210608 Msa0077990:five_prime_UTR
ATGCGAGTTGTGGATGTTGG+AGG 0.558982 1_2:-55210062 Msa0077990:CDS
TGGAACTAGTACATAGTAAG+TGG 0.561824 1_2:+55208439 None:intergenic
GTAGCTTGGTCCTAAGGTAG+AGG 0.563615 1_2:-55208525 Msa0077990:intron
ACTAAGCATTAAGGAGGCCA+TGG 0.563703 1_2:+55210406 None:intergenic
AGGAGGAAGAGTATATTGAA+TGG 0.563879 1_2:-55208769 Msa0077990:CDS
ATGAATCTAGGCTGAGAAGA+AGG 0.567539 1_2:+55210218 None:intergenic
TACTAGTTCCAATTTACATG+TGG 0.569755 1_2:-55208427 Msa0077990:CDS
GATGCAGCATCTCATCCGCA+AGG 0.572011 1_2:-55210241 Msa0077990:CDS
CAACAAATTAACATTATGGA+AGG 0.575099 1_2:+55208258 None:intergenic
GAGGCACAGCTAAGGAGTTG+TGG 0.577245 1_2:+55210740 None:intergenic
AGAATGCGAGTTGTGGATGT+TGG 0.578151 1_2:-55210065 Msa0077990:CDS
ACAGAAGCCTGTAAATCCAT+TGG 0.579520 1_2:-55208498 Msa0077990:CDS
CTCACAGAACCTAATCCAGA+TGG 0.579852 1_2:+55210347 None:intergenic
TTAGCCTTAGCCAGCTGATG+AGG 0.582379 1_2:+55209966 None:intergenic
TGTATTCTATAGTACCTGAA+GGG 0.582741 1_2:+55208616 None:intergenic
TTAATACTAAGATTCTTCCA+AGG 0.583577 1_2:+55210440 None:intergenic
CAAAATGGTATCGCGGTGTG+CGG 0.584931 1_2:-55208700 Msa0077990:CDS
TGGAGAATCAAGTAAAGTTG+GGG 0.588040 1_2:-55208357 Msa0077990:three_prime_UTR
AATGGTATCGCGGTGTGCGG+CGG 0.590801 1_2:-55208697 Msa0077990:CDS
GAATCAAGTAAAGTTGGGGT+AGG 0.591713 1_2:-55208353 Msa0077990:three_prime_UTR
TATAGAGTTCTGAAAATAGG+AGG 0.592372 1_2:-55208872 Msa0077990:CDS
TATGCTGCAATATAACTAAG+TGG 0.595980 1_2:+55210578 None:intergenic
TATCGGTCCGCATAATCAGT+TGG 0.596748 1_2:+55209882 None:intergenic
TATTAAGTTCTACAACTCCA+TGG 0.596798 1_2:-55210423 Msa0077990:exon
AATACAGTCGTATTTAGATG+TGG 0.605074 1_2:+55207973 None:intergenic
TGTGGTCAAACATTGACTCA+TGG 0.611013 1_2:+55207991 None:intergenic
CGAGTTGTGGATGTTGGAGG+AGG 0.623443 1_2:-55210059 Msa0077990:CDS
AGCACCACTAAGCATTAAGG+AGG 0.625927 1_2:+55210400 None:intergenic
TGACCGGAGAATGCGAGTTG+TGG 0.630299 1_2:-55210072 Msa0077990:CDS
TGACAGAACAACCCATGATG+AGG 0.635531 1_2:+55208669 None:intergenic
GTGGATGCTCTTCCCTAAGG+AGG 0.637523 1_2:-55208786 Msa0077990:CDS
TCATAGAAATGAGACATGGA+TGG 0.640099 1_2:+55210503 None:intergenic
GCTTCTTTAATGCCACGCTG+TGG 0.647758 1_2:+55208896 None:intergenic
AGCCTTGAGAGAAACACCAA+TGG 0.656851 1_2:+55208482 None:intergenic
GTATTCTATAGTACCTGAAG+GGG 0.660431 1_2:+55208617 None:intergenic
AGGCTGAGAAGAAGGCCTTG+CGG 0.675664 1_2:+55210226 None:intergenic
ATAGGTCCAAAATGGTATCG+CGG 0.700687 1_2:-55208707 Msa0077990:CDS
ATGTGATAGCAATACCTCAG+TGG 0.708177 1_2:-55210669 Msa0077990:five_prime_UTR
TATATCATAGAAATGAGACA+TGG 0.715108 1_2:+55210499 None:intergenic
TGTTGTTCCATTCACCACTG+AGG 0.726264 1_2:+55210655 None:intergenic
TACTGGCCTGATCCACAGCG+TGG 0.734098 1_2:-55208908 Msa0077990:CDS
CACCACATAATACATGTGAG+TGG 0.746020 1_2:+55210606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGGATTTTTCTATTTTT+TGG + chr1_2:55207952-55207971 None:intergenic 15.0%
!!! TTATTTTAAGTTAAAAGACT+AGG - chr1_2:55208897-55208916 Msa0077990:CDS 15.0%
!!! ATCTTTTTGTTTTACTTAAT+AGG - chr1_2:55209045-55209064 Msa0077990:intron 15.0%
!! TTATAAAATGTCATTCAAAA+TGG - chr1_2:55209145-55209164 Msa0077990:intron 15.0%
!! AATATTTAAAGAACTTTAGA+AGG + chr1_2:55210064-55210083 None:intergenic 15.0%
!!! GATTTACTTTTCAAAATTAA+TGG - chr1_2:55210361-55210380 Msa0077990:CDS 15.0%
!! TTACTTAAATTTAAGTGTTA+CGG - chr1_2:55210766-55210785 Msa0077990:five_prime_UTR 15.0%
!!! TTTTTGGTACATTTTATTAG+AGG + chr1_2:55207936-55207955 None:intergenic 20.0%
!!! TATAAAAGTGTTAATTTCCT+TGG - chr1_2:55208197-55208216 Msa0077990:three_prime_UTR 20.0%
!! TATGATCATATAATAAATCC+AGG - chr1_2:55208508-55208527 Msa0077990:CDS 20.0%
!! AAAGAATGTAAGATAATTGA+AGG - chr1_2:55208727-55208746 Msa0077990:CDS 20.0%
!!! ATATTTTGTAAAGCTCAAAT+GGG + chr1_2:55208990-55209009 None:intergenic 20.0%
!!! AATATTTTGTAAAGCTCAAA+TGG + chr1_2:55208991-55209010 None:intergenic 20.0%
!!! AAATGAAAAGACATCTTTTA+TGG - chr1_2:55209015-55209034 Msa0077990:intron 20.0%
!!! GTTTTACTTAATAGGAAAAT+TGG - chr1_2:55209053-55209072 Msa0077990:intron 20.0%
!!! CTAATTTGTCTATGAAATTT+AGG - chr1_2:55209280-55209299 Msa0077990:intron 20.0%
!! AAATGAGTAAATAGACAAAT+TGG + chr1_2:55209577-55209596 None:intergenic 20.0%
!! TTATGTTACATTGATACATA+AGG + chr1_2:55209702-55209721 None:intergenic 20.0%
!! GTATATTGAATGGTTTAAAA+AGG - chr1_2:55209895-55209914 Msa0077990:CDS 20.0%
!! ATGTCAACAAATTAACATTA+TGG + chr1_2:55210403-55210422 None:intergenic 20.0%
!! TACTTTGAACATTGTTTATT+TGG - chr1_2:55210479-55210498 Msa0077990:five_prime_UTR 20.0%
! AAAATTTGTGAAGATATGTC+TGG - chr1_2:55207878-55207897 Msa0077990:three_prime_UTR 25.0%
! TATATCATAGAAATGAGACA+TGG + chr1_2:55208158-55208177 None:intergenic 25.0%
! TTAATACTAAGATTCTTCCA+AGG + chr1_2:55208217-55208236 None:intergenic 25.0%
! AGAAATAATGCAGTTTCATA+TGG - chr1_2:55208358-55208377 Msa0077990:three_prime_UTR 25.0%
! GTTTCATATGGTAACAAATA+CGG - chr1_2:55208370-55208389 Msa0077990:exon 25.0%
! TGTATATACTGCAAGATTTA+TGG - chr1_2:55208859-55208878 Msa0077990:CDS 25.0%
!! CAATTTTGAATGACATATCA+TGG + chr1_2:55209210-55209229 None:intergenic 25.0%
! CATGATATGTCATTCAAAAT+TGG - chr1_2:55209208-55209227 Msa0077990:intron 25.0%
! AGGTCAACTAAAGAAAAAAA+TGG - chr1_2:55209300-55209319 Msa0077990:intron 25.0%
!! TCTATTTACTCATTTTCTAG+AGG - chr1_2:55209582-55209601 Msa0077990:intron 25.0%
! CAACAAATTAACATTATGGA+AGG + chr1_2:55210399-55210418 None:intergenic 25.0%
!!! GTTAATTTGTTGACATGTTT+TGG - chr1_2:55210407-55210426 Msa0077990:CDS 25.0%
! GAATCGTAGTAAAATTTAAG+AGG + chr1_2:55210445-55210464 None:intergenic 25.0%
!!! ATTTTACTACGATTCTGAAA+TGG - chr1_2:55210450-55210469 Msa0077990:five_prime_UTR 25.0%
! TTTGAACATTGTTTATTTGG+AGG - chr1_2:55210482-55210501 Msa0077990:five_prime_UTR 25.0%
! TTATACCTATCCAATAAACT+TGG + chr1_2:55210539-55210558 None:intergenic 25.0%
! ACATGAAAAGCATAGTGTAT+TGG + chr1_2:55207969-55207988 None:intergenic 30.0%
TATGCTGCAATATAACTAAG+TGG + chr1_2:55208079-55208098 None:intergenic 30.0%
TGGTAAGGTACATAATGTTA+TGG + chr1_2:55208104-55208123 None:intergenic 30.0%
AACTGAAATGGAAAATGGTA+AGG + chr1_2:55208119-55208138 None:intergenic 30.0%
TTTGCAACTGAAATGGAAAA+TGG + chr1_2:55208124-55208143 None:intergenic 30.0%
! TTTGGAATTTGCAACTGAAA+TGG + chr1_2:55208131-55208150 None:intergenic 30.0%
TATTAAGTTCTACAACTCCA+TGG - chr1_2:55208231-55208250 Msa0077990:three_prime_UTR 30.0%
ATTAATAGCATAGTTCCATC+TGG - chr1_2:55208292-55208311 Msa0077990:three_prime_UTR 30.0%
AAAATGCTTCTTTCTTGTGT+TGG + chr1_2:55208462-55208481 None:intergenic 30.0%
!!! AACACAAGAAAGAAGCATTT+TGG - chr1_2:55208461-55208480 Msa0077990:CDS 30.0%
!!! AAGAAGCATTTTGGTTTTAC+AGG - chr1_2:55208470-55208489 Msa0077990:CDS 30.0%
ATATAATAAATCCAGGTCAC+TGG - chr1_2:55208515-55208534 Msa0077990:CDS 30.0%
TCTTGCAGTATATACAATGA+AGG + chr1_2:55208855-55208874 None:intergenic 30.0%
!! TGACAAATTAGTCTTTAGTG+TGG - chr1_2:55209355-55209374 Msa0077990:intron 30.0%
TAGCTGTAAAAGCTAACATA+TGG - chr1_2:55209458-55209477 Msa0077990:intron 30.0%
! ACCGTCACTTAACAATTTTA+GGG - chr1_2:55209490-55209509 Msa0077990:intron 30.0%
TCCCTAAAATTGTTAAGTGA+CGG + chr1_2:55209494-55209513 None:intergenic 30.0%
!! ACTCATTTTCTAGAGGAAAA+TGG - chr1_2:55209589-55209608 Msa0077990:intron 30.0%
! TGTTGTTCAGTATTGAATAC+TGG - chr1_2:55209729-55209748 Msa0077990:intron 30.0%
!! GCATATAGAGTTCTGAAAAT+AGG - chr1_2:55209779-55209798 Msa0077990:intron 30.0%
!! TATAGAGTTCTGAAAATAGG+AGG - chr1_2:55209782-55209801 Msa0077990:intron 30.0%
ATTGAGACAACCAAAATGTT+GGG + chr1_2:55209835-55209854 None:intergenic 30.0%
AATTGAGACAACCAAAATGT+TGG + chr1_2:55209836-55209855 None:intergenic 30.0%
ATTGAATGGTTTAAAAAGGC+TGG - chr1_2:55209899-55209918 Msa0077990:CDS 30.0%
TGAAAAGAATAGGTCCAAAA+TGG - chr1_2:55209939-55209958 Msa0077990:CDS 30.0%
TGTATTCTATAGTACCTGAA+GGG + chr1_2:55210041-55210060 None:intergenic 30.0%
TACTAGTTCCAATTTACATG+TGG - chr1_2:55210227-55210246 Msa0077990:CDS 30.0%
TCTTTAAGCCACATGTAAAT+TGG + chr1_2:55210238-55210257 None:intergenic 30.0%
TAAAGACCAAATTGTTCCAA+AGG - chr1_2:55210252-55210271 Msa0077990:CDS 30.0%
AAAGACCAAATTGTTCCAAA+GGG - chr1_2:55210253-55210272 Msa0077990:CDS 30.0%
ATTGGAGAATCAAGTAAAGT+TGG - chr1_2:55210295-55210314 Msa0077990:CDS 30.0%
TTGGAGAATCAAGTAAAGTT+GGG - chr1_2:55210296-55210315 Msa0077990:CDS 30.0%
AGCATATAAGCCAAGTTTAT+TGG - chr1_2:55210526-55210545 Msa0077990:five_prime_UTR 30.0%
ATAAGCCAAGTTTATTGGAT+AGG - chr1_2:55210531-55210550 Msa0077990:five_prime_UTR 30.0%
AATACAGTCGTATTTAGATG+TGG + chr1_2:55210684-55210703 None:intergenic 30.0%
TACCTGAAAAAAAACTCACA+TGG + chr1_2:55210724-55210743 None:intergenic 30.0%
!! TTTTATTAGAGGCACAGCTA+AGG + chr1_2:55207925-55207944 None:intergenic 35.0%
TCATAGAAATGAGACATGGA+TGG + chr1_2:55208154-55208173 None:intergenic 35.0%
TTCTTGTGTTGGATGAATCT+AGG + chr1_2:55208451-55208470 None:intergenic 35.0%
TCCATTTCCAACTGATTATG+CGG - chr1_2:55208765-55208784 Msa0077990:CDS 35.0%
AAGACTAGGTATGTGTTACA+TGG - chr1_2:55208911-55208930 Msa0077990:CDS 35.0%
! ACGGTTTGGACTCAAAATTA+AGG - chr1_2:55208935-55208954 Msa0077990:intron 35.0%
TTGGACTCAAAATTAAGGCA+TGG - chr1_2:55208940-55208959 Msa0077990:intron 35.0%
ACTCAAAATTAAGGCATGGT+TGG - chr1_2:55208944-55208963 Msa0077990:intron 35.0%
! AGTCCATCAATTTTGCGAAT+TGG - chr1_2:55209105-55209124 Msa0077990:intron 35.0%
TTGCCAATTCGCAAAATTGA+TGG + chr1_2:55209111-55209130 None:intergenic 35.0%
! TAGTGAGTTGACATTGATGT+GGG + chr1_2:55209256-55209275 None:intergenic 35.0%
! TTAGTGAGTTGACATTGATG+TGG + chr1_2:55209257-55209276 None:intergenic 35.0%
ACATCAATGTCAACTCACTA+AGG - chr1_2:55209256-55209275 Msa0077990:intron 35.0%
!! CAAATTAGTCTTTAGTGTGG+TGG - chr1_2:55209358-55209377 Msa0077990:intron 35.0%
! GACCGTCACTTAACAATTTT+AGG - chr1_2:55209489-55209508 Msa0077990:intron 35.0%
AACCAAAATGTTGGGTATAC+AGG + chr1_2:55209827-55209846 None:intergenic 35.0%
CAATATACTCTTCCTCCTTA+GGG + chr1_2:55209883-55209902 None:intergenic 35.0%
TCAATATACTCTTCCTCCTT+AGG + chr1_2:55209884-55209903 None:intergenic 35.0%
! AGGAGGAAGAGTATATTGAA+TGG - chr1_2:55209885-55209904 Msa0077990:CDS 35.0%
GATGTCAAGCTGAAAAGAAT+AGG - chr1_2:55209929-55209948 Msa0077990:CDS 35.0%
GTATTCTATAGTACCTGAAG+GGG + chr1_2:55210040-55210059 None:intergenic 35.0%
GTGTATTCTATAGTACCTGA+AGG + chr1_2:55210042-55210061 None:intergenic 35.0%
ATGCATGTCTTTATGTAGCT+TGG - chr1_2:55210115-55210134 Msa0077990:CDS 35.0%
! AGAAACACCAATGGATTTAC+AGG + chr1_2:55210166-55210185 None:intergenic 35.0%
TGGAACTAGTACATAGTAAG+TGG + chr1_2:55210218-55210237 None:intergenic 35.0%
AGGCGTATTTAATCGAAGAT+TGG - chr1_2:55210277-55210296 Msa0077990:CDS 35.0%
TGGAGAATCAAGTAAAGTTG+GGG - chr1_2:55210297-55210316 Msa0077990:CDS 35.0%
TCTGATGATTGATGTTCTCA+AGG - chr1_2:55210339-55210358 Msa0077990:CDS 35.0%
ATTATGGAAGGCAAAGTTCA+TGG + chr1_2:55210387-55210406 None:intergenic 35.0%
! TGTTTATTTGGAGGTTAGTC+AGG - chr1_2:55210491-55210510 Msa0077990:five_prime_UTR 35.0%
GATAGGTATAAAACATGTGC+TGG - chr1_2:55210548-55210567 Msa0077990:five_prime_UTR 35.0%
CAGACATGAAATCAGAAATC+AGG + chr1_2:55210578-55210597 None:intergenic 35.0%
CTGATTTCTGATTTCATGTC+TGG - chr1_2:55210576-55210595 Msa0077990:five_prime_UTR 35.0%
!!! GACCATGTGAGTTTTTTTTC+AGG - chr1_2:55210719-55210738 Msa0077990:five_prime_UTR 35.0%
GCTAAGGAGTTGTGGAATAT+GGG + chr1_2:55207909-55207928 None:intergenic 40.0%
AGCTAAGGAGTTGTGGAATA+TGG + chr1_2:55207910-55207929 None:intergenic 40.0%
ATGTGATAGCAATACCTCAG+TGG - chr1_2:55207985-55208004 Msa0077990:three_prime_UTR 40.0%
CACCACTCACATGTATTATG+TGG - chr1_2:55208046-55208065 Msa0077990:three_prime_UTR 40.0%
CACCACATAATACATGTGAG+TGG + chr1_2:55208051-55208070 None:intergenic 40.0%
GAAATGAGACATGGATGGTT+TGG + chr1_2:55208149-55208168 None:intergenic 40.0%
TTCAGCACCACTAAGCATTA+AGG + chr1_2:55208260-55208279 None:intergenic 40.0%
AGCATAGTTCCATCTGGATT+AGG - chr1_2:55208298-55208317 Msa0077990:three_prime_UTR 40.0%
ATGAATCTAGGCTGAGAAGA+AGG + chr1_2:55208439-55208458 None:intergenic 40.0%
TCCGCATAATCAGTTGGAAA+TGG + chr1_2:55208769-55208788 None:intergenic 40.0%
ACCTTCCAGCAGAAACATAT+CGG + chr1_2:55208792-55208811 None:intergenic 40.0%
TAGGTATGTGTTACATGGCA+CGG - chr1_2:55208916-55208935 Msa0077990:CDS 40.0%
TGATTCCATATCATGGCCAT+TGG + chr1_2:55209384-55209403 None:intergenic 40.0%
ATGGCCATGATATGGAATCA+AGG - chr1_2:55209384-55209403 Msa0077990:intron 40.0%
TCCACCTTGATTCCATATCA+TGG + chr1_2:55209391-55209410 None:intergenic 40.0%
ATGATATGGAATCAAGGTGG+AGG - chr1_2:55209390-55209409 Msa0077990:intron 40.0%
! GTCCTGTATACCCAACATTT+TGG - chr1_2:55209822-55209841 Msa0077990:intron 40.0%
CTCAATTCTTTGCAGACATG+TGG - chr1_2:55209849-55209868 Msa0077990:intron 40.0%
ATAGGTCCAAAATGGTATCG+CGG - chr1_2:55209947-55209966 Msa0077990:CDS 40.0%
! ACTGGTGTCAAACCTTTATC+AGG - chr1_2:55210007-55210026 Msa0077990:CDS 40.0%
CTTTATGTAGCTTGGTCCTA+AGG - chr1_2:55210123-55210142 Msa0077990:CDS 40.0%
TTCTGTACATCCTCTACCTT+AGG + chr1_2:55210142-55210161 None:intergenic 40.0%
ACAGAAGCCTGTAAATCCAT+TGG - chr1_2:55210156-55210175 Msa0077990:CDS 40.0%
! ATCCATTGGTGTTTCTCTCA+AGG - chr1_2:55210170-55210189 Msa0077990:CDS 40.0%
TTTCTCTCAAGGCTCATTCT+TGG - chr1_2:55210181-55210200 Msa0077990:CDS 40.0%
GAATCAAGTAAAGTTGGGGT+AGG - chr1_2:55210301-55210320 Msa0077990:CDS 40.0%
AAACTTGGCTTATATGCTGC+AGG + chr1_2:55210524-55210543 None:intergenic 40.0%
!! TGTGGTCAAACATTGACTCA+TGG + chr1_2:55210666-55210685 None:intergenic 40.0%
AGCAATACCTCAGTGGTGAA+TGG - chr1_2:55207992-55208011 Msa0077990:three_prime_UTR 45.0%
TGTTGTTCCATTCACCACTG+AGG + chr1_2:55208002-55208021 None:intergenic 45.0%
!! TACATGTGAGTGGTGCTGAT+TGG + chr1_2:55208041-55208060 None:intergenic 45.0%
ACTAAGCATTAAGGAGGCCA+TGG + chr1_2:55208251-55208270 None:intergenic 45.0%
ATGGCCTCCTTAATGCTTAG+TGG - chr1_2:55208250-55208269 Msa0077990:three_prime_UTR 45.0%
AGCACCACTAAGCATTAAGG+AGG + chr1_2:55208257-55208276 None:intergenic 45.0%
CTCACAGAACCTAATCCAGA+TGG + chr1_2:55208310-55208329 None:intergenic 45.0%
!! AGCCTGCTGATTTGTATGAC+CGG - chr1_2:55208566-55208585 Msa0077990:intron 45.0%
AGAATGCGAGTTGTGGATGT+TGG - chr1_2:55208589-55208608 Msa0077990:intron 45.0%
GGAACTGGATTCACTACTCT+TGG - chr1_2:55208616-55208635 Msa0077990:intron 45.0%
TATCGGTCCGCATAATCAGT+TGG + chr1_2:55208775-55208794 None:intergenic 45.0%
! ACCGATATGTTTCTGCTGGA+AGG - chr1_2:55208788-55208807 Msa0077990:CDS 45.0%
ATGTGTTACATGGCACGGTT+TGG - chr1_2:55208921-55208940 Msa0077990:intron 45.0%
TACTGCTAGAGACTATGACG+TGG - chr1_2:55209184-55209203 Msa0077990:intron 45.0%
GCCATGATATGGAATCAAGG+TGG - chr1_2:55209387-55209406 Msa0077990:intron 45.0%
TGACACCTCCACCAAATATG+TGG + chr1_2:55209426-55209445 None:intergenic 45.0%
TGACAGAACAACCCATGATG+AGG + chr1_2:55209988-55210007 None:intergenic 45.0%
! ATCATGGGTTGTTCTGTCAC+TGG - chr1_2:55209989-55210008 Msa0077990:CDS 45.0%
AGCCTTGAGAGAAACACCAA+TGG + chr1_2:55210175-55210194 None:intergenic 45.0%
ACCAAATTGTTCCAAAGGGC+AGG - chr1_2:55210257-55210276 Msa0077990:CDS 45.0%
GATTAAATACGCCTGCCCTT+TGG + chr1_2:55210271-55210290 None:intergenic 45.0%
ATGTCTTCAGTCCAGTGACC+TGG + chr1_2:55208529-55208548 None:intergenic 50.0%
CTCCGGTCATACAAATCAGC+AGG + chr1_2:55208571-55208590 None:intergenic 50.0%
CATCCACAACTCGCATTCTC+CGG + chr1_2:55208588-55208607 None:intergenic 50.0%
ATGCGAGTTGTGGATGTTGG+AGG - chr1_2:55208592-55208611 Msa0077990:intron 50.0%
TGATCAGTCTCCTCATCAGC+TGG - chr1_2:55208678-55208697 Msa0077990:CDS 50.0%
!! TTAGCCTTAGCCAGCTGATG+AGG + chr1_2:55208691-55208710 None:intergenic 50.0%
GCTGGCTAAGGCTAAGAAGA+AGG - chr1_2:55208696-55208715 Msa0077990:CDS 50.0%
GTCTTTAGTGTGGTGGCCAA+TGG - chr1_2:55209365-55209384 Msa0077990:intron 50.0%
ATGGAATCAAGGTGGAGGAC+AGG - chr1_2:55209395-55209414 Msa0077990:intron 50.0%
GACAGGAGGAGCCACATATT+TGG - chr1_2:55209412-55209431 Msa0077990:intron 50.0%
AGGAGGAGCCACATATTTGG+TGG - chr1_2:55209415-55209434 Msa0077990:intron 50.0%
! AGGAGCCACATATTTGGTGG+AGG - chr1_2:55209418-55209437 Msa0077990:intron 50.0%
TTAATGCCACGCTGTGGATC+AGG + chr1_2:55209755-55209774 None:intergenic 50.0%
GCTTCTTTAATGCCACGCTG+TGG + chr1_2:55209761-55209780 None:intergenic 50.0%
GGAGGCAAAGCGTGCATTAT+AGG - chr1_2:55209800-55209819 Msa0077990:intron 50.0%
CATGTGGATGCTCTTCCCTA+AGG - chr1_2:55209865-55209884 Msa0077990:intron 50.0%
CAAAATGGTATCGCGGTGTG+CGG - chr1_2:55209954-55209973 Msa0077990:CDS 50.0%
GTAGCTTGGTCCTAAGGTAG+AGG - chr1_2:55210129-55210148 Msa0077990:CDS 50.0%
!! GCCTGCCCTTTGGAACAATT+TGG + chr1_2:55210261-55210280 None:intergenic 50.0%
GAGGCACAGCTAAGGAGTTG+TGG + chr1_2:55207917-55207936 None:intergenic 55.0%
GATGCAGCATCTCATCCGCA+AGG - chr1_2:55208413-55208432 Msa0077990:CDS 55.0%
AGGCTGAGAAGAAGGCCTTG+CGG + chr1_2:55208431-55208450 None:intergenic 55.0%
TGACCGGAGAATGCGAGTTG+TGG - chr1_2:55208582-55208601 Msa0077990:intron 55.0%
CGAGTTGTGGATGTTGGAGG+AGG - chr1_2:55208595-55208614 Msa0077990:intron 55.0%
GTGGATGTTGGAGGAGGAAC+TGG - chr1_2:55208601-55208620 Msa0077990:intron 55.0%
GTCTCCTCATCAGCTGGCTA+AGG - chr1_2:55208684-55208703 Msa0077990:CDS 55.0%
! GCGGACCGATATGTTTCTGC+TGG - chr1_2:55208784-55208803 Msa0077990:CDS 55.0%
GGTGGCCAATGGCCATGATA+TGG - chr1_2:55209376-55209395 Msa0077990:intron 55.0%
GAATCAAGGTGGAGGACAGG+AGG - chr1_2:55209398-55209417 Msa0077990:intron 55.0%
GTGGATGCTCTTCCCTAAGG+AGG - chr1_2:55209868-55209887 Msa0077990:CDS 55.0%
! CGCACACCGCGATACCATTT+TGG + chr1_2:55209956-55209975 None:intergenic 55.0%
AGGGGAGAGTCGCCTGATAA+AGG + chr1_2:55210022-55210041 None:intergenic 55.0%
! TACTGGCCTGATCCACAGCG+TGG - chr1_2:55209746-55209765 Msa0077990:intron 60.0%
AATGGTATCGCGGTGTGCGG+CGG - chr1_2:55209957-55209976 Msa0077990:CDS 60.0%
ATCAGGCGACTCTCCCCTTC+AGG - chr1_2:55210024-55210043 Msa0077990:CDS 60.0%
TATCGCGGTGTGCGGCGGCA+CGG - chr1_2:55209962-55209981 Msa0077990:CDS 70.0%
CGGCGGCACGGCCTCATCAT+GGG - chr1_2:55209974-55209993 Msa0077990:CDS 70.0%
GCGGCGGCACGGCCTCATCA+TGG - chr1_2:55209973-55209992 Msa0077990:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55207871 55210805 55207871 ID=Msa0077990;Name=Msa0077990
chr1_2 mRNA 55207871 55210805 55207871 ID=Msa0077990-mRNA-1;Parent=Msa0077990;Name=Msa0077990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=379|1|1|1|1|1|3|517|340
chr1_2 exon 55207871 55208543 55207871 ID=Msa0077990-mRNA-1:exon:17199;Parent=Msa0077990-mRNA-1
chr1_2 exon 55208631 55208937 55208631 ID=Msa0077990-mRNA-1:exon:17198;Parent=Msa0077990-mRNA-1
chr1_2 exon 55209867 55210805 55209867 ID=Msa0077990-mRNA-1:exon:17197;Parent=Msa0077990-mRNA-1
chr1_2 five_prime_UTR 55210427 55210805 55210427 ID=Msa0077990-mRNA-1:five_prime_utr;Parent=Msa0077990-mRNA-1
chr1_2 CDS 55209867 55210426 55209867 ID=Msa0077990-mRNA-1:cds;Parent=Msa0077990-mRNA-1
chr1_2 CDS 55208631 55208937 55208631 ID=Msa0077990-mRNA-1:cds;Parent=Msa0077990-mRNA-1
chr1_2 CDS 55208388 55208543 55208388 ID=Msa0077990-mRNA-1:cds;Parent=Msa0077990-mRNA-1
chr1_2 three_prime_UTR 55207871 55208387 55207871 ID=Msa0077990-mRNA-1:three_prime_utr;Parent=Msa0077990-mRNA-1
Gene Sequence

>Msa0077990

ATGGCCTCCTTAATGCTTAGTGGTGCTGAAAATACAAAGCTTATTAATAGCATAGTTCCATCTGGATTAGGTTCTGTGAGTCTTAACTTTCACAAGAAGTGTTTCATCAGAAATAATGCAGTTTCATATGGTAACAAATACGGTGCTAGAAACTTGACAGCGCGATGCAGCATCTCATCCGCAAGGCCTTCTTCTCAGCCTAGATTCATCCAACACAAGAAAGAAGCATTTTGGTTTTACAGGTTTTTGTCTATTGTGTATGATCATATAATAAATCCAGGTCACTGGACTGAAGACATGAGAGATGATGCACTTGAGCCTGCTGATTTGTATGACCGGAGAATGCGAGTTGTGGATGTTGGAGGAGGAACTGGATTCACTACTCTTGGTATCGTGAAGCATGTTGATGCTAAAAATGTTACAATTCTTGATCAGTCTCCTCATCAGCTGGCTAAGGCTAAGAAGAAGGAAGCATTGAAAGAATGTAAGATAATTGAAGGTGATGCAGAAGATCTTCCATTTCCAACTGATTATGCGGACCGATATGTTTCTGCTGGAAGTATTGAATACTGGCCTGATCCACAGCGTGGCATTAAAGAAGCATATAGAGTTCTGAAAATAGGAGGCAAAGCGTGCATTATAGGTCCTGTATACCCAACATTTTGGTTGTCTCAATTCTTTGCAGACATGTGGATGCTCTTCCCTAAGGAGGAAGAGTATATTGAATGGTTTAAAAAGGCTGGTTTCAAAGATGTCAAGCTGAAAAGAATAGGTCCAAAATGGTATCGCGGTGTGCGGCGGCACGGCCTCATCATGGGTTGTTCTGTCACTGGTGTCAAACCTTTATCAGGCGACTCTCCCCTTCAGCTTGGTCCTAAGGTAGAGGATGTACAGAAGCCTGTAAATCCATTGGTGTTTCTCTCAAGGCTCATTCTTGGTACAATTGCAGCCACTTACTATGTACTAGTTCCAATTTACATGTGGCTTAAAGACCAAATTGTTCCAAAGGGCAGGCGTATTTAA

Protein sequence

>Msa0077990

MASLMLSGAENTKLINSIVPSGLGSVSLNFHKKCFIRNNAVSYGNKYGARNLTARCSISSARPSSQPRFIQHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLYDRRMRVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKKKEALKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACIIGPVYPTFWLSQFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKPLSGDSPLQLGPKVEDVQKPVNPLVFLSRLILGTIAATYYVLVPIYMWLKDQIVPKGRRI*