AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1022590


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022590 MtrunA17_Chr7g0239451 94.762 210 11 0 1 210 1 210 9.17e-150 416
Msa1022590 MtrunA17_Chr7g0239511 79.524 210 43 0 1 210 1 210 3.15e-124 352
Msa1022590 MtrunA17_Chr7g0239501 80.288 208 41 0 1 208 1 208 2.54e-121 344
Msa1022590 MtrunA17_Chr7g0239481 75.714 210 50 1 1 210 1 209 1.72e-113 324
Msa1022590 MtrunA17_Chr7g0239491 72.381 210 57 1 1 210 1 209 2.58e-113 324
Msa1022590 MtrunA17_Chr7g0239461 71.770 209 10 1 1 209 1 160 1.60e-100 290
Msa1022590 MtrunA17_Chr4g0032141 60.000 200 80 0 11 210 51 250 3.05e-86 257
Msa1022590 MtrunA17_Chr3g0112151 61.538 208 80 0 3 210 73 280 8.11e-86 257
Msa1022590 MtrunA17_Chr3g0112261 57.353 204 87 0 7 210 10 213 6.45e-81 242
Msa1022590 MtrunA17_Chr3g0112271 55.024 209 94 0 2 210 3 211 6.65e-79 237
Msa1022590 MtrunA17_Chr3g0112171 60.000 195 78 0 16 210 15 209 1.08e-78 236
Msa1022590 MtrunA17_Chr3g0112141 59.794 194 78 0 16 209 17 210 2.98e-77 233
Msa1022590 MtrunA17_Chr4g0032181 53.714 175 81 0 32 206 17 191 1.06e-66 205
Msa1022590 MtrunA17_Chr4g0075531 33.668 199 125 5 12 209 5 197 3.03e-23 93.6
Msa1022590 MtrunA17_Chr7g0249571 28.780 205 142 4 4 204 26 230 5.26e-21 89.0
Msa1022590 MtrunA17_Chr4g0074511 32.512 203 127 4 16 210 40 240 1.55e-20 87.0
Msa1022590 MtrunA17_Chr0c30g0494101 33.333 204 122 6 16 210 40 238 2.73e-20 86.3
Msa1022590 MtrunA17_Chr8g0357481 31.841 201 114 5 16 201 14 206 2.92e-20 86.7
Msa1022590 MtrunA17_Chr7g0272961 32.828 198 122 6 16 205 40 234 2.56e-19 84.0
Msa1022590 MtrunA17_Chr1g0191751 30.303 198 127 5 16 205 101 295 2.03e-17 79.3
Msa1022590 MtrunA17_Chr4g0028911 27.861 201 139 4 16 210 11 211 5.79e-17 77.0
Msa1022590 MtrunA17_Chr4g0028921 28.358 201 138 4 16 210 11 211 1.12e-16 76.3
Msa1022590 MtrunA17_Chr7g0259521 32.487 197 124 5 16 205 6 200 9.43e-16 73.6
Msa1022590 MtrunA17_Chr7g0259531 32.178 202 118 6 16 205 11 205 9.49e-16 73.6
Msa1022590 MtrunA17_Chr8g0355281 28.358 201 130 6 16 205 69 266 1.02e-14 71.6
Msa1022590 MtrunA17_Chr7g0244061 32.692 208 128 7 3 205 18 218 3.48e-14 69.7
Msa1022590 MtrunA17_Chr4g0025971 30.693 202 129 6 1 198 1 195 2.73e-13 67.0
Msa1022590 MtrunA17_Chr4g0044131 28.125 192 133 3 16 205 8 196 4.31e-13 66.2
Msa1022590 MtrunA17_Chr7g0267011 27.660 188 131 3 16 201 8 192 5.93e-13 64.7
Msa1022590 MtrunA17_Chr6g0459281 27.442 215 144 7 1 210 1 208 7.02e-13 65.9
Msa1022590 MtrunA17_Chr7g0266981 31.068 206 129 5 7 206 4 202 7.13e-13 65.9
Msa1022590 MtrunA17_Chr6g0459261 29.858 211 136 8 1 206 13 216 1.59e-12 64.7
Msa1022590 MtrunA17_Chr3g0123251 28.788 198 130 5 17 206 52 246 1.73e-12 65.1
Msa1022590 MtrunA17_Chr1g0182511 31.343 201 122 5 16 205 14 209 3.71e-12 63.5
Msa1022590 MtrunA17_Chr4g0044111 30.693 202 135 3 7 206 4 202 7.42e-12 62.8
Msa1022590 MtrunA17_Chr3g0122901 26.562 192 133 3 22 209 81 268 1.06e-11 62.8
Msa1022590 MtrunA17_Chr6g0459351 27.907 215 143 7 1 210 1 208 1.16e-11 62.4
Msa1022590 MtrunA17_Chr3g0112161 56.667 60 21 2 126 184 3 58 2.26e-11 57.8
Msa1022590 MtrunA17_Chr6g0466681 27.907 172 110 5 18 181 66 231 2.73e-11 61.6
Msa1022590 MtrunA17_Chr6g0459271 29.384 211 137 8 1 206 1 204 5.31e-11 60.5
Msa1022590 MtrunA17_Chr3g0131521 32.886 149 95 4 12 158 28 173 9.94e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1022590 AT1G07440.1 56.931 202 87 0 8 209 4 205 1.05e-81 244
Msa1022590 AT5G06060.1 57.500 200 85 0 11 210 4 203 6.00e-81 242
Msa1022590 AT2G29320.3 60.000 205 72 4 11 209 7 207 1.34e-80 239
Msa1022590 AT2G29260.1 55.024 209 94 0 2 210 54 262 2.07e-80 243
Msa1022590 AT2G29320.1 59.709 206 73 4 11 210 7 208 1.63e-79 239
Msa1022590 AT2G29300.1 58.537 205 76 3 11 210 2 202 2.37e-79 238
Msa1022590 AT2G29340.3 56.500 200 87 0 11 210 2 201 6.42e-79 235
Msa1022590 AT2G29340.4 56.500 200 87 0 11 210 2 201 6.42e-79 235
Msa1022590 AT2G29300.2 58.537 205 76 3 11 210 2 202 1.32e-78 237
Msa1022590 AT2G29290.2 56.000 200 88 0 11 210 2 201 1.58e-78 236
Msa1022590 AT2G29310.3 56.500 200 87 0 11 210 2 201 3.57e-78 233
Msa1022590 AT2G29350.2 56.500 200 87 0 10 209 9 208 9.25e-78 233
Msa1022590 AT2G29340.2 56.500 200 87 0 11 210 2 201 1.23e-77 234
Msa1022590 AT2G29340.1 56.500 200 87 0 11 210 2 201 5.01e-77 234
Msa1022590 AT2G29150.1 55.714 210 92 1 1 210 1 209 6.07e-77 232
Msa1022590 AT2G29310.1 56.500 200 87 0 11 210 2 201 7.52e-77 232
Msa1022590 AT2G29350.1 57.360 197 84 0 10 206 9 205 1.04e-76 231
Msa1022590 AT2G29360.1 54.146 205 94 0 1 205 1 205 2.07e-75 228
Msa1022590 AT1G07450.1 55.556 198 87 1 13 210 5 201 3.28e-75 228
Msa1022590 AT2G29330.1 55.500 200 89 0 11 210 2 201 9.03e-75 226
Msa1022590 AT2G30670.1 53.000 200 94 0 11 210 2 201 4.93e-74 224
Msa1022590 AT2G29370.1 55.051 198 89 0 1 198 1 198 9.37e-73 221
Msa1022590 AT2G29320.2 57.609 184 69 3 32 210 11 190 2.30e-67 207
Msa1022590 AT1G07440.2 54.971 171 77 0 8 178 4 174 4.09e-65 199
Msa1022590 AT2G29290.1 52.809 178 84 0 33 210 7 184 8.72e-64 198
Msa1022590 AT2G29310.4 53.631 179 83 0 32 210 21 199 1.33e-63 196
Msa1022590 AT2G29310.2 53.631 179 83 0 32 210 21 199 2.37e-62 195
Msa1022590 AT2G29350.3 54.819 166 75 0 41 206 2 167 1.33e-59 187
Msa1022590 AT2G29170.1 64.894 94 32 1 10 102 9 102 5.41e-40 132
Msa1022590 AT4G05530.1 33.846 195 124 4 16 209 9 199 2.09e-25 99.8
Msa1022590 AT3G05260.1 36.893 206 120 5 7 205 28 230 3.02e-24 97.4
Msa1022590 AT1G54870.1 34.783 207 124 5 7 205 73 276 3.17e-23 95.5
Msa1022590 AT1G54870.2 34.783 207 124 5 7 205 75 278 3.68e-23 95.1
Msa1022590 AT3G03980.1 33.649 211 128 3 7 205 5 215 8.69e-23 93.2
Msa1022590 AT3G12800.1 31.282 195 124 3 16 201 10 203 2.38e-22 92.4
Msa1022590 AT3G03330.1 29.756 205 139 3 4 203 29 233 2.06e-20 87.8
Msa1022590 AT5G18210.1 34.000 200 122 4 15 205 7 205 7.92e-20 85.1
Msa1022590 AT5G18210.2 34.000 200 122 4 15 205 7 205 8.84e-20 85.1
Msa1022590 AT4G13180.1 32.995 197 123 4 16 205 13 207 7.83e-18 79.7
Msa1022590 AT3G04000.1 32.075 212 131 3 7 205 5 216 2.98e-16 75.5
Msa1022590 AT3G55290.1 27.670 206 133 7 16 210 18 218 2.49e-15 73.2
Msa1022590 AT3G47350.1 29.381 194 126 6 18 206 46 233 2.51e-15 73.6
Msa1022590 AT3G55310.1 27.094 203 138 6 16 210 17 217 2.73e-15 73.2
Msa1022590 AT3G55290.2 27.670 206 133 7 16 210 17 217 2.78e-15 72.8
Msa1022590 AT3G47350.2 29.381 194 126 6 18 206 46 233 2.84e-15 73.6
Msa1022590 AT1G49670.1 32.195 205 124 8 18 209 6 208 5.35e-15 73.6
Msa1022590 AT1G49670.2 32.367 207 121 9 18 209 6 208 5.61e-15 73.2
Msa1022590 AT5G04900.1 28.125 192 129 5 22 205 83 273 8.07e-15 72.4
Msa1022590 AT5G50700.1 30.457 197 128 7 15 207 44 235 1.72e-14 71.2
Msa1022590 AT5G50600.1 30.457 197 128 7 15 207 44 235 1.72e-14 71.2
Msa1022590 AT3G46170.1 26.733 202 140 6 16 210 26 226 2.31e-14 70.5
Msa1022590 AT5G50590.2 29.630 189 122 6 16 199 45 227 2.39e-14 70.1
Msa1022590 AT5G50690.2 29.630 189 122 6 16 199 45 227 2.39e-14 70.1
Msa1022590 AT3G03350.2 30.636 173 107 4 36 203 188 352 2.59e-14 70.9
Msa1022590 AT5G50590.1 30.233 172 116 4 16 185 45 214 3.10e-14 70.1
Msa1022590 AT5G50690.1 30.233 172 116 4 16 185 45 214 3.10e-14 70.1
Msa1022590 AT1G63380.4 25.248 202 144 5 16 210 19 220 4.29e-14 69.7
Msa1022590 AT1G63380.2 25.248 202 144 5 16 210 22 223 4.92e-14 69.7
Msa1022590 AT1G63380.3 25.248 202 144 5 16 210 15 216 4.95e-14 69.3
Msa1022590 AT1G63380.1 25.248 202 144 5 16 210 17 218 5.04e-14 69.3
Msa1022590 AT3G47360.1 29.688 192 124 6 20 206 49 234 7.57e-14 69.3
Msa1022590 AT1G24360.1 30.052 193 125 5 22 209 80 267 8.02e-14 69.3
Msa1022590 AT3G51680.1 30.808 198 127 5 16 205 32 227 1.53e-13 68.6
Msa1022590 AT1G67730.1 29.000 200 129 5 17 207 50 245 3.32e-13 67.4
Msa1022590 AT1G62610.3 24.752 202 145 5 16 210 15 216 3.54e-13 67.0
Msa1022590 AT1G62610.1 24.752 202 145 5 16 210 14 215 3.68e-13 67.0
Msa1022590 AT1G62610.2 24.752 202 145 5 16 210 13 214 3.76e-13 67.0
Msa1022590 AT2G17845.1 26.341 205 140 6 16 210 47 250 3.93e-13 67.4
Msa1022590 AT1G62610.4 24.752 202 145 5 16 210 19 220 4.16e-13 67.0
Msa1022590 AT3G59710.3 27.386 241 123 7 13 206 13 248 2.34e-12 65.1
Msa1022590 AT3G59710.2 27.386 241 123 7 13 206 42 277 2.73e-12 65.1
Msa1022590 AT4G13250.1 25.490 204 131 4 22 205 165 367 2.78e-12 65.5
Msa1022590 AT3G59710.1 27.083 240 123 7 14 206 24 258 1.54e-11 62.8
Msa1022590 AT5G10050.1 27.128 188 130 4 22 208 11 192 2.33e-11 62.0

Find 43 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGAAGAGTTAGCTGAATT+TGG 0.164853 7_1:+49147225 Msa1022590:CDS
CCATTCTAATGCCAAGTTCT+TGG 0.242739 7_1:-49147866 None:intergenic
CTTCTAAAGGAATCTGGATA+TGG 0.270015 7_1:+49147651 Msa1022590:CDS
GTGTTTACTTCTTCCGTTGC+AGG 0.279109 7_1:+49147681 Msa1022590:CDS
TGAACAACGCAAGAGATTAA+TGG 0.291743 7_1:+49147359 Msa1022590:CDS
AGTAAGGGGTTTAATGTAAC+AGG 0.367595 7_1:+49147312 Msa1022590:CDS
CACCCTCTTCTAAAGGAATC+TGG 0.371504 7_1:+49147645 Msa1022590:CDS
AGAAGATATTAATAAATGTT+TGG 0.384019 7_1:+49147278 Msa1022590:CDS
ACCGTTTCTTCTATCTTTCA+AGG 0.386978 7_1:+49147384 Msa1022590:CDS
TCCGAAAGTGATGTCTTAAC+AGG 0.388653 7_1:-49147928 None:intergenic
TTAATAAATGTTTGGAAGAG+TGG 0.412448 7_1:+49147286 Msa1022590:CDS
ACCTGTTAAGACATCACTTT+CGG 0.414846 7_1:+49147927 Msa1022590:CDS
CCAAGAACTTGGCATTAGAA+TGG 0.430035 7_1:+49147866 Msa1022590:CDS
GAAGATATAAATACTACAAT+TGG 0.437311 7_1:+49147582 Msa1022590:CDS
CGTGCAAATGCTGTGGCACC+TGG 0.452656 7_1:+49147904 Msa1022590:CDS
ACAGGTGGAACCCGAGGCAT+TGG 0.454943 7_1:+49146958 Msa1022590:CDS
GAATCAATTCACCAAGAACT+TGG 0.462001 7_1:+49147855 Msa1022590:CDS
TTTGGAAGAGTGGAAAAGTA+AGG 0.465710 7_1:+49147296 Msa1022590:CDS
AGGAGGAAACATACCTTTAG+TGG 0.472951 7_1:-49147739 None:intergenic
TCCTTGAAAGATAGAAGAAA+CGG 0.489594 7_1:-49147385 None:intergenic
TCTGTTTATGCAGCCACTAA+AGG 0.493534 7_1:+49147726 Msa1022590:CDS
CAAGAACTTGGCATTAGAAT+GGG 0.500423 7_1:+49147867 Msa1022590:CDS
AGTGATGTCTTAACAGGTCC+AGG 0.505141 7_1:-49147922 None:intergenic
TTCTAAAGGAATCTGGATAT+GGG 0.510619 7_1:+49147652 Msa1022590:CDS
ATCACTTTCGGAATCAATCA+TGG 0.531450 7_1:+49147939 Msa1022590:CDS
CAGGTGGAACCCGAGGCATT+GGG 0.538316 7_1:+49146959 Msa1022590:CDS
ACTTGCACACCCTCTTCTAA+AGG 0.540737 7_1:+49147638 Msa1022590:CDS
AGGAAATTACCCAATGCCTC+GGG 0.542864 7_1:-49146968 None:intergenic
ATCCAGATTCCTTTAGAAGA+GGG 0.544396 7_1:-49147647 None:intergenic
AAGGAAATTACCCAATGCCT+CGG 0.548009 7_1:-49146969 None:intergenic
TTGGAAGAGTGGAAAAGTAA+GGG 0.556242 7_1:+49147297 Msa1022590:CDS
GCAGCAACAAGGATAAAAGA+TGG 0.570695 7_1:+49146908 Msa1022590:CDS
TGGAAGAGTGGAAAAGTAAG+GGG 0.571177 7_1:+49147298 Msa1022590:CDS
TATCCAGATTCCTTTAGAAG+AGG 0.575091 7_1:-49147648 None:intergenic
GATAAAAGATGGTCACTACA+TGG 0.585575 7_1:+49146919 Msa1022590:CDS
GCTGCATAAACAGATATGAC+AGG 0.595042 7_1:-49147717 None:intergenic
GGTGTGCAAGTTGACACAAA+TGG 0.595523 7_1:-49147626 None:intergenic
GGTATGACTGCGTTAGTGAC+AGG 0.615872 7_1:+49146940 Msa1022590:CDS
AACAAAGTTAAGCAGCAACA+AGG 0.621496 7_1:+49146897 Msa1022590:CDS
CTTGGCATTAGAATGGGCAA+AGG 0.624391 7_1:+49147873 Msa1022590:CDS
TAATATTCGTGCAAATGCTG+TGG 0.649939 7_1:+49147897 Msa1022590:CDS
TTAGTGACAGGTGGAACCCG+AGG 0.654837 7_1:+49146952 Msa1022590:CDS
ATGACTGCGTTAGTGACAGG+TGG 0.701550 7_1:+49146943 Msa1022590:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAAATCAATTTAAA+AGG - chr7_1:49147044-49147063 None:intergenic 10.0%
!!! TATTTTTCTATTTTTAAACT+AGG + chr7_1:49147193-49147212 Msa1022590:intron 10.0%
!!! ATCAAATTATTTTTTAGATA+AGG - chr7_1:49147824-49147843 None:intergenic 10.0%
!! AAATACAAAATCAATTTAAA+AGG - chr7_1:49147044-49147063 None:intergenic 10.0%
!!! TATTTTTCTATTTTTAAACT+AGG + chr7_1:49147193-49147212 Msa1022590:intron 10.0%
!!! ATCAAATTATTTTTTAGATA+AGG - chr7_1:49147824-49147843 None:intergenic 10.0%
!! AGAAGATATTAATAAATGTT+TGG + chr7_1:49147278-49147297 Msa1022590:CDS 15.0%
!!! ATTATCTATTATTTTCTTCA+TGG - chr7_1:49147556-49147575 None:intergenic 15.0%
!! TCTAAAAAATAATTTGATTC+AGG + chr7_1:49147826-49147845 Msa1022590:intron 15.0%
!! AGAAGATATTAATAAATGTT+TGG + chr7_1:49147278-49147297 Msa1022590:CDS 15.0%
!!! ATTATCTATTATTTTCTTCA+TGG - chr7_1:49147556-49147575 None:intergenic 15.0%
!! TCTAAAAAATAATTTGATTC+AGG + chr7_1:49147826-49147845 Msa1022590:intron 15.0%
!! TCTTAAAGGCAAAATTAAAA+AGG + chr7_1:49147000-49147019 Msa1022590:intron 20.0%
!! CTAATTTAATATGTTTGACA+TGG + chr7_1:49147089-49147108 Msa1022590:intron 20.0%
!!! TGTATATAATGTTACCTTTT+AGG + chr7_1:49147509-49147528 Msa1022590:intron 20.0%
!! GAAGATATAAATACTACAAT+TGG + chr7_1:49147582-49147601 Msa1022590:CDS 20.0%
!! TCAAATTCAATTTATTCAAG+AGG - chr7_1:49147762-49147781 None:intergenic 20.0%
!! TCTTAAAGGCAAAATTAAAA+AGG + chr7_1:49147000-49147019 Msa1022590:intron 20.0%
!! CTAATTTAATATGTTTGACA+TGG + chr7_1:49147089-49147108 Msa1022590:intron 20.0%
!!! TGTATATAATGTTACCTTTT+AGG + chr7_1:49147509-49147528 Msa1022590:intron 20.0%
!! GAAGATATAAATACTACAAT+TGG + chr7_1:49147582-49147601 Msa1022590:CDS 20.0%
!! TCAAATTCAATTTATTCAAG+AGG - chr7_1:49147762-49147781 None:intergenic 20.0%
! TTCCTTATCTTAACTCTTAA+AGG + chr7_1:49146986-49147005 Msa1022590:intron 25.0%
!! ATGTTTGACATGGTAATTTT+TGG + chr7_1:49147099-49147118 Msa1022590:intron 25.0%
! TTAATAAATGTTTGGAAGAG+TGG + chr7_1:49147286-49147305 Msa1022590:CDS 25.0%
!! TCTATTATTTTCTTCATGGT+AGG - chr7_1:49147552-49147571 None:intergenic 25.0%
!! ATTGGTACAAATTTTGTATC+TGG + chr7_1:49147600-49147619 Msa1022590:CDS 25.0%
! AATTCAATTTATTCAAGAGG+AGG - chr7_1:49147759-49147778 None:intergenic 25.0%
! AAAATAATTTGATTCAGGAG+CGG + chr7_1:49147831-49147850 Msa1022590:intron 25.0%
! TTCCTTATCTTAACTCTTAA+AGG + chr7_1:49146986-49147005 Msa1022590:intron 25.0%
!! ATGTTTGACATGGTAATTTT+TGG + chr7_1:49147099-49147118 Msa1022590:intron 25.0%
! TTAATAAATGTTTGGAAGAG+TGG + chr7_1:49147286-49147305 Msa1022590:CDS 25.0%
!! TCTATTATTTTCTTCATGGT+AGG - chr7_1:49147552-49147571 None:intergenic 25.0%
!! ATTGGTACAAATTTTGTATC+TGG + chr7_1:49147600-49147619 Msa1022590:CDS 25.0%
! AATTCAATTTATTCAAGAGG+AGG - chr7_1:49147759-49147778 None:intergenic 25.0%
! AAAATAATTTGATTCAGGAG+CGG + chr7_1:49147831-49147850 Msa1022590:intron 25.0%
! TGCCTTTAAGAGTTAAGATA+AGG - chr7_1:49146991-49147010 None:intergenic 30.0%
TCCTTGAAAGATAGAAGAAA+CGG - chr7_1:49147388-49147407 None:intergenic 30.0%
! TTCTAAAGGAATCTGGATAT+GGG + chr7_1:49147652-49147671 Msa1022590:CDS 30.0%
! AATAGCTTTTAAACCTGCAA+CGG - chr7_1:49147697-49147716 None:intergenic 30.0%
! TGCCTTTAAGAGTTAAGATA+AGG - chr7_1:49146991-49147010 None:intergenic 30.0%
TCCTTGAAAGATAGAAGAAA+CGG - chr7_1:49147388-49147407 None:intergenic 30.0%
! TTCTAAAGGAATCTGGATAT+GGG + chr7_1:49147652-49147671 Msa1022590:CDS 30.0%
! AATAGCTTTTAAACCTGCAA+CGG - chr7_1:49147697-49147716 None:intergenic 30.0%
AACAAAGTTAAGCAGCAACA+AGG + chr7_1:49146897-49146916 Msa1022590:CDS 35.0%
GATAAAAGATGGTCACTACA+TGG + chr7_1:49146919-49146938 Msa1022590:CDS 35.0%
GTTGAAGAGTTAGCTGAATT+TGG + chr7_1:49147225-49147244 Msa1022590:CDS 35.0%
TTTGGAAGAGTGGAAAAGTA+AGG + chr7_1:49147296-49147315 Msa1022590:CDS 35.0%
TTGGAAGAGTGGAAAAGTAA+GGG + chr7_1:49147297-49147316 Msa1022590:CDS 35.0%
AGTAAGGGGTTTAATGTAAC+AGG + chr7_1:49147312-49147331 Msa1022590:CDS 35.0%
TGAACAACGCAAGAGATTAA+TGG + chr7_1:49147359-49147378 Msa1022590:CDS 35.0%
ACCGTTTCTTCTATCTTTCA+AGG + chr7_1:49147384-49147403 Msa1022590:CDS 35.0%
! ATCCAGATTCCTTTAGAAGA+GGG - chr7_1:49147650-49147669 None:intergenic 35.0%
! TATCCAGATTCCTTTAGAAG+AGG - chr7_1:49147651-49147670 None:intergenic 35.0%
! CTTCTAAAGGAATCTGGATA+TGG + chr7_1:49147651-49147670 Msa1022590:CDS 35.0%
GAATCAATTCACCAAGAACT+TGG + chr7_1:49147855-49147874 Msa1022590:CDS 35.0%
CAAGAACTTGGCATTAGAAT+GGG + chr7_1:49147867-49147886 Msa1022590:CDS 35.0%
TAATATTCGTGCAAATGCTG+TGG + chr7_1:49147897-49147916 Msa1022590:CDS 35.0%
ACCTGTTAAGACATCACTTT+CGG + chr7_1:49147927-49147946 Msa1022590:CDS 35.0%
AACAAAGTTAAGCAGCAACA+AGG + chr7_1:49146897-49146916 Msa1022590:CDS 35.0%
GATAAAAGATGGTCACTACA+TGG + chr7_1:49146919-49146938 Msa1022590:CDS 35.0%
GTTGAAGAGTTAGCTGAATT+TGG + chr7_1:49147225-49147244 Msa1022590:CDS 35.0%
TTTGGAAGAGTGGAAAAGTA+AGG + chr7_1:49147296-49147315 Msa1022590:CDS 35.0%
TTGGAAGAGTGGAAAAGTAA+GGG + chr7_1:49147297-49147316 Msa1022590:CDS 35.0%
AGTAAGGGGTTTAATGTAAC+AGG + chr7_1:49147312-49147331 Msa1022590:CDS 35.0%
TGAACAACGCAAGAGATTAA+TGG + chr7_1:49147359-49147378 Msa1022590:CDS 35.0%
ACCGTTTCTTCTATCTTTCA+AGG + chr7_1:49147384-49147403 Msa1022590:CDS 35.0%
! ATCCAGATTCCTTTAGAAGA+GGG - chr7_1:49147650-49147669 None:intergenic 35.0%
! TATCCAGATTCCTTTAGAAG+AGG - chr7_1:49147651-49147670 None:intergenic 35.0%
! CTTCTAAAGGAATCTGGATA+TGG + chr7_1:49147651-49147670 Msa1022590:CDS 35.0%
GAATCAATTCACCAAGAACT+TGG + chr7_1:49147855-49147874 Msa1022590:CDS 35.0%
CAAGAACTTGGCATTAGAAT+GGG + chr7_1:49147867-49147886 Msa1022590:CDS 35.0%
TAATATTCGTGCAAATGCTG+TGG + chr7_1:49147897-49147916 Msa1022590:CDS 35.0%
ACCTGTTAAGACATCACTTT+CGG + chr7_1:49147927-49147946 Msa1022590:CDS 35.0%
GCAGCAACAAGGATAAAAGA+TGG + chr7_1:49146908-49146927 Msa1022590:CDS 40.0%
AAGGAAATTACCCAATGCCT+CGG - chr7_1:49146972-49146991 None:intergenic 40.0%
TGGAAGAGTGGAAAAGTAAG+GGG + chr7_1:49147298-49147317 Msa1022590:CDS 40.0%
CGCAGCATTGTTTACCTAAA+AGG - chr7_1:49147526-49147545 None:intergenic 40.0%
GCTGCATAAACAGATATGAC+AGG - chr7_1:49147720-49147739 None:intergenic 40.0%
TCTGTTTATGCAGCCACTAA+AGG + chr7_1:49147726-49147745 Msa1022590:CDS 40.0%
AGGAGGAAACATACCTTTAG+TGG - chr7_1:49147742-49147761 None:intergenic 40.0%
CCATTCTAATGCCAAGTTCT+TGG - chr7_1:49147869-49147888 None:intergenic 40.0%
CCAAGAACTTGGCATTAGAA+TGG + chr7_1:49147866-49147885 Msa1022590:CDS 40.0%
TCCGAAAGTGATGTCTTAAC+AGG - chr7_1:49147931-49147950 None:intergenic 40.0%
GCAGCAACAAGGATAAAAGA+TGG + chr7_1:49146908-49146927 Msa1022590:CDS 40.0%
AAGGAAATTACCCAATGCCT+CGG - chr7_1:49146972-49146991 None:intergenic 40.0%
TGGAAGAGTGGAAAAGTAAG+GGG + chr7_1:49147298-49147317 Msa1022590:CDS 40.0%
CGCAGCATTGTTTACCTAAA+AGG - chr7_1:49147526-49147545 None:intergenic 40.0%
GCTGCATAAACAGATATGAC+AGG - chr7_1:49147720-49147739 None:intergenic 40.0%
TCTGTTTATGCAGCCACTAA+AGG + chr7_1:49147726-49147745 Msa1022590:CDS 40.0%
AGGAGGAAACATACCTTTAG+TGG - chr7_1:49147742-49147761 None:intergenic 40.0%
CCATTCTAATGCCAAGTTCT+TGG - chr7_1:49147869-49147888 None:intergenic 40.0%
CCAAGAACTTGGCATTAGAA+TGG + chr7_1:49147866-49147885 Msa1022590:CDS 40.0%
TCCGAAAGTGATGTCTTAAC+AGG - chr7_1:49147931-49147950 None:intergenic 40.0%
AGGAAATTACCCAATGCCTC+GGG - chr7_1:49146971-49146990 None:intergenic 45.0%
! GGTGTGCAAGTTGACACAAA+TGG - chr7_1:49147629-49147648 None:intergenic 45.0%
ACTTGCACACCCTCTTCTAA+AGG + chr7_1:49147638-49147657 Msa1022590:CDS 45.0%
! CACCCTCTTCTAAAGGAATC+TGG + chr7_1:49147645-49147664 Msa1022590:CDS 45.0%
GTGTTTACTTCTTCCGTTGC+AGG + chr7_1:49147681-49147700 Msa1022590:CDS 45.0%
CTTGGCATTAGAATGGGCAA+AGG + chr7_1:49147873-49147892 Msa1022590:CDS 45.0%
AGTGATGTCTTAACAGGTCC+AGG - chr7_1:49147925-49147944 None:intergenic 45.0%
AGGAAATTACCCAATGCCTC+GGG - chr7_1:49146971-49146990 None:intergenic 45.0%
! GGTGTGCAAGTTGACACAAA+TGG - chr7_1:49147629-49147648 None:intergenic 45.0%
ACTTGCACACCCTCTTCTAA+AGG + chr7_1:49147638-49147657 Msa1022590:CDS 45.0%
! CACCCTCTTCTAAAGGAATC+TGG + chr7_1:49147645-49147664 Msa1022590:CDS 45.0%
GTGTTTACTTCTTCCGTTGC+AGG + chr7_1:49147681-49147700 Msa1022590:CDS 45.0%
CTTGGCATTAGAATGGGCAA+AGG + chr7_1:49147873-49147892 Msa1022590:CDS 45.0%
AGTGATGTCTTAACAGGTCC+AGG - chr7_1:49147925-49147944 None:intergenic 45.0%
GGTATGACTGCGTTAGTGAC+AGG + chr7_1:49146940-49146959 Msa1022590:CDS 50.0%
ATGACTGCGTTAGTGACAGG+TGG + chr7_1:49146943-49146962 Msa1022590:CDS 50.0%
GGTATGACTGCGTTAGTGAC+AGG + chr7_1:49146940-49146959 Msa1022590:CDS 50.0%
ATGACTGCGTTAGTGACAGG+TGG + chr7_1:49146943-49146962 Msa1022590:CDS 50.0%
TTAGTGACAGGTGGAACCCG+AGG + chr7_1:49146952-49146971 Msa1022590:CDS 55.0%
TTAGTGACAGGTGGAACCCG+AGG + chr7_1:49146952-49146971 Msa1022590:CDS 55.0%
ACAGGTGGAACCCGAGGCAT+TGG + chr7_1:49146958-49146977 Msa1022590:CDS 60.0%
! CAGGTGGAACCCGAGGCATT+GGG + chr7_1:49146959-49146978 Msa1022590:CDS 60.0%
CGTGCAAATGCTGTGGCACC+TGG + chr7_1:49147904-49147923 Msa1022590:CDS 60.0%
ACAGGTGGAACCCGAGGCAT+TGG + chr7_1:49146958-49146977 Msa1022590:CDS 60.0%
! CAGGTGGAACCCGAGGCATT+GGG + chr7_1:49146959-49146978 Msa1022590:CDS 60.0%
CGTGCAAATGCTGTGGCACC+TGG + chr7_1:49147904-49147923 Msa1022590:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 49146889 49147960 49146889 ID=Msa1022590;Name=Msa1022590
chr7_1 mRNA 49146889 49147960 49146889 ID=Msa1022590-mRNA-1;Parent=Msa1022590;Name=Msa1022590-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.66|0.75|4|0|210
chr7_1 exon 49146889 49146980 49146889 ID=Msa1022590-mRNA-1:exon:9605;Parent=Msa1022590-mRNA-1
chr7_1 exon 49147215 49147422 49147215 ID=Msa1022590-mRNA-1:exon:9606;Parent=Msa1022590-mRNA-1
chr7_1 exon 49147531 49147747 49147531 ID=Msa1022590-mRNA-1:exon:9607;Parent=Msa1022590-mRNA-1
chr7_1 exon 49147848 49147960 49147848 ID=Msa1022590-mRNA-1:exon:9608;Parent=Msa1022590-mRNA-1
chr7_1 CDS 49146889 49146980 49146889 ID=Msa1022590-mRNA-1:cds;Parent=Msa1022590-mRNA-1
chr7_1 CDS 49147215 49147422 49147215 ID=Msa1022590-mRNA-1:cds;Parent=Msa1022590-mRNA-1
chr7_1 CDS 49147531 49147747 49147531 ID=Msa1022590-mRNA-1:cds;Parent=Msa1022590-mRNA-1
chr7_1 CDS 49147848 49147960 49147848 ID=Msa1022590-mRNA-1:cds;Parent=Msa1022590-mRNA-1
Gene Sequence

>Msa1022590

ATGGCTGAAACAAAGTTAAGCAGCAACAAGGATAAAAGATGGTCACTACATGGTATGACTGCGTTAGTGACAGGTGGAACCCGAGGCATTGGGTACGCAATTGTTGAAGAGTTAGCTGAATTTGGAGCATCTGTTCATATATGTGCACGTAATGAAGAAGATATTAATAAATGTTTGGAAGAGTGGAAAAGTAAGGGGTTTAATGTAACAGGATCAGTATGTGATATACTATTTCATGAACAACGCAAGAGATTAATGGAAACCGTTTCTTCTATCTTTCAAGGAAAGCTCAATATTCTAGTAAACAATGCTGCGAAACCTACCATGAAGAAAATAATAGATAATACTGATGAAGATATAAATACTACAATTGGTACAAATTTTGTATCTGGTTACCATTTGTGTCAACTTGCACACCCTCTTCTAAAGGAATCTGGATATGGGAGAATAGTGTTTACTTCTTCCGTTGCAGGTTTAAAAGCTATTCCTGTCATATCTGTTTATGCAGCCACTAAAGGAGCGGTGAATCAATTCACCAAGAACTTGGCATTAGAATGGGCAAAGGATAATATTCGTGCAAATGCTGTGGCACCTGGACCTGTTAAGACATCACTTTCGGAATCAATCATG

Protein sequence

>Msa1022590

MAETKLSSNKDKRWSLHGMTALVTGGTRGIGYAIVEELAEFGASVHICARNEEDINKCLEEWKSKGFNVTGSVCDILFHEQRKRLMETVSSIFQGKLNILVNNAAKPTMKKIIDNTDEDINTTIGTNFVSGYHLCQLAHPLLKESGYGRIVFTSSVAGLKAIPVISVYAATKGAVNQFTKNLALEWAKDNIRANAVAPGPVKTSLSESIM