AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011510 MtrunA17_Chr1g0159991 91.489 376 22 1 321 686 8 383 0.0 692
Msa0011510 MtrunA17_Chr1g0159991 61.364 352 101 2 3 321 9 358 5.96e-146 430
Msa0011510 MtrunA17_Chr1g0159981 85.714 378 44 1 319 686 16 393 0.0 654
Msa0011510 MtrunA17_Chr1g0159981 63.143 350 93 3 6 321 21 368 1.22e-148 437
Msa0011510 MtrunA17_Chr1g0160011 84.225 374 46 3 321 683 11 382 0.0 631
Msa0011510 MtrunA17_Chr1g0160011 58.901 382 107 6 3 345 12 382 1.70e-142 421
Msa0011510 MtrunA17_Chr1g0159971 81.003 379 36 3 1 345 15 391 0.0 604
Msa0011510 MtrunA17_Chr1g0159971 64.935 385 119 3 317 685 9 393 4.80e-179 515
Msa0011510 MtrunA17_Chr1g0160031 79.310 377 66 2 320 686 10 384 0.0 602
Msa0011510 MtrunA17_Chr1g0160031 55.968 377 125 5 3 345 12 381 7.28e-139 412
Msa0011510 MtrunA17_Chr1g0160101 59.375 384 143 3 314 685 7 389 7.29e-155 453
Msa0011510 MtrunA17_Chr1g0160101 63.483 356 94 3 2 323 14 367 8.50e-153 447
Msa0011510 MtrunA17_Chr7g0254461 53.316 377 162 4 323 685 17 393 9.31e-139 412
Msa0011510 MtrunA17_Chr7g0254461 51.467 375 141 5 10 345 19 391 1.64e-125 378
Msa0011510 MtrunA17_Chr8g0381581 51.969 381 168 4 312 679 5 383 1.10e-134 401
Msa0011510 MtrunA17_Chr8g0381581 50.535 374 145 4 7 344 17 386 4.16e-120 364
Msa0011510 MtrunA17_Chr7g0226941 47.500 360 170 5 341 685 25 380 1.87e-105 325
Msa0011510 MtrunA17_Chr7g0226941 44.857 350 151 4 13 324 14 359 4.39e-93 293
Msa0011510 MtrunA17_Chr7g0275291 41.223 376 199 6 323 683 7 375 7.69e-91 288
Msa0011510 MtrunA17_Chr7g0275291 37.666 377 194 5 9 350 10 380 3.85e-77 252
Msa0011510 MtrunA17_Chr7g0273101 45.787 356 170 10 338 676 18 367 1.50e-90 287
Msa0011510 MtrunA17_Chr7g0273101 42.090 335 150 7 29 324 26 355 1.96e-76 250
Msa0011510 MtrunA17_Chr6g0450701 43.251 363 175 9 339 683 29 378 3.64e-89 283
Msa0011510 MtrunA17_Chr6g0450701 40.584 377 166 9 10 345 19 378 9.25e-81 261
Msa0011510 MtrunA17_Chr7g0226911 40.526 380 197 10 328 683 10 384 4.36e-89 283
Msa0011510 MtrunA17_Chr7g0226911 39.178 365 172 7 24 345 27 384 3.49e-75 247
Msa0011510 MtrunA17_Chr8g0352901 42.078 385 183 10 323 683 4 372 1.34e-85 273
Msa0011510 MtrunA17_Chr8g0352901 37.634 372 169 9 21 345 17 372 6.25e-67 224
Msa0011510 MtrunA17_Chr7g0226931 40.921 391 190 11 329 683 13 398 1.56e-85 275
Msa0011510 MtrunA17_Chr7g0226931 39.189 370 164 8 11 324 15 379 1.85e-73 243
Msa0011510 MtrunA17_Chr1g0191461 43.127 371 185 11 325 677 7 369 1.61e-82 265
Msa0011510 MtrunA17_Chr1g0191461 38.950 362 174 9 4 324 1 356 6.54e-72 238
Msa0011510 MtrunA17_Chr6g0450711 40.051 392 191 11 323 684 85 462 2.04e-82 268
Msa0011510 MtrunA17_Chr6g0450711 40.882 340 147 6 23 321 113 439 2.47e-69 233
Msa0011510 MtrunA17_Chr8g0347751 40.278 360 187 6 344 683 31 382 2.91e-82 265
Msa0011510 MtrunA17_Chr8g0347751 37.203 379 185 5 15 350 19 387 4.05e-72 239
Msa0011510 MtrunA17_Chr6g0450731 40.669 359 177 11 341 684 25 362 2.92e-79 256
Msa0011510 MtrunA17_Chr6g0450731 38.953 344 151 8 16 321 17 339 3.26e-66 222
Msa0011510 MtrunA17_Chr6g0450721 37.760 384 193 9 323 684 1 360 2.26e-78 254
Msa0011510 MtrunA17_Chr6g0450721 38.841 345 148 6 16 321 17 337 3.46e-65 219
Msa0011510 MtrunA17_Chr7g0271551 40.974 349 174 10 349 684 36 365 9.18e-75 245
Msa0011510 MtrunA17_Chr7g0271551 39.255 349 145 10 32 339 36 358 5.61e-64 216
Msa0011510 MtrunA17_Chr8g0339251 40.870 345 160 12 323 648 4 323 1.08e-64 217
Msa0011510 MtrunA17_Chr8g0339251 38.110 328 142 8 21 308 17 323 4.64e-59 202
Msa0011510 MtrunA17_Chr2g0283531 35.088 342 158 12 30 324 29 353 3.96e-49 176
Msa0011510 MtrunA17_Chr2g0283531 35.475 358 184 13 347 677 29 366 5.96e-48 173
Msa0011510 MtrunA17_Chr2g0283481 33.512 373 203 12 329 675 27 380 3.51e-45 166
Msa0011510 MtrunA17_Chr2g0283481 32.970 367 175 12 5 321 21 366 5.73e-42 157
Msa0011510 MtrunA17_Chr2g0283501 33.151 365 201 10 337 675 18 365 4.45e-45 165
Msa0011510 MtrunA17_Chr2g0283501 33.777 376 163 14 9 328 13 358 9.47e-45 164
Msa0011510 MtrunA17_Chr3g0104821 33.611 360 189 14 347 677 42 380 3.30e-43 160
Msa0011510 MtrunA17_Chr3g0104821 32.565 347 161 11 30 324 42 367 1.77e-40 152
Msa0011510 MtrunA17_Chr2g0317261 31.025 361 175 11 9 324 7 338 2.87e-41 154
Msa0011510 MtrunA17_Chr2g0317261 31.161 353 192 11 347 677 28 351 2.52e-40 151
Msa0011510 MtrunA17_Chr2g0283511 30.749 387 221 11 318 677 2 368 4.88e-41 154
Msa0011510 MtrunA17_Chr2g0283511 32.239 335 159 8 37 321 36 352 5.54e-39 148
Msa0011510 MtrunA17_Chr2g0317271 30.748 361 176 11 9 324 7 338 1.51e-40 152
Msa0011510 MtrunA17_Chr2g0317271 31.161 353 192 11 347 677 28 351 5.53e-40 150
Msa0011510 MtrunA17_Chr0c01g0489581 31.044 364 177 11 6 324 4 338 1.57e-40 152
Msa0011510 MtrunA17_Chr0c01g0489581 30.878 353 193 11 347 677 28 351 2.08e-39 149
Msa0011510 MtrunA17_Chr0c01g0489571 31.044 364 177 11 6 324 4 338 1.77e-40 152
Msa0011510 MtrunA17_Chr0c01g0489571 31.161 353 192 11 347 677 28 351 8.85e-40 150
Msa0011510 MtrunA17_Chr2g0301581 31.143 350 159 11 23 324 25 340 3.09e-38 145
Msa0011510 MtrunA17_Chr2g0301581 31.844 358 181 14 347 677 32 353 4.11e-35 136
Msa0011510 MtrunA17_Chr2g0301541 30.857 350 160 11 23 324 25 340 7.21e-38 144
Msa0011510 MtrunA17_Chr2g0301541 31.285 358 183 14 347 677 32 353 1.01e-33 132
Msa0011510 MtrunA17_Chr4g0057991 31.461 356 194 12 347 676 37 368 7.60e-38 145
Msa0011510 MtrunA17_Chr4g0057991 29.301 372 194 13 4 328 11 360 2.79e-32 129
Msa0011510 MtrunA17_Chr3g0112821 32.448 339 164 12 30 324 28 345 2.83e-37 143
Msa0011510 MtrunA17_Chr3g0112821 32.022 356 192 15 347 677 28 358 5.44e-36 139
Msa0011510 MtrunA17_Chr3g0093031 32.070 343 165 12 30 324 28 350 3.74e-36 140
Msa0011510 MtrunA17_Chr3g0093031 31.667 360 193 15 347 677 28 363 4.23e-34 134
Msa0011510 MtrunA17_Chr3g0112691 32.258 341 165 11 30 324 28 348 4.08e-36 139
Msa0011510 MtrunA17_Chr3g0112691 31.073 354 201 11 347 677 28 361 1.31e-34 135
Msa0011510 MtrunA17_Chr3g0096551 30.966 352 169 11 30 324 27 361 8.32e-34 133
Msa0011510 MtrunA17_Chr3g0096551 29.477 363 209 12 347 677 27 374 2.21e-31 126
Msa0011510 MtrunA17_Chr2g0283541 34.653 303 138 11 30 324 29 279 3.36e-33 129
Msa0011510 MtrunA17_Chr2g0283541 32.456 228 128 9 466 677 75 292 1.16e-22 99.0
Msa0011510 MtrunA17_Chr8g0349341 31.343 335 195 10 349 670 37 349 3.62e-33 131
Msa0011510 MtrunA17_Chr8g0349341 30.723 332 166 12 32 324 37 343 4.88e-28 116
Msa0011510 MtrunA17_Chr8g0341001 30.601 366 204 15 324 667 9 346 9.15e-33 129
Msa0011510 MtrunA17_Chr8g0341001 27.198 364 204 11 1 324 1 343 2.90e-25 107
Msa0011510 MtrunA17_Chr2g0330781 30.994 342 188 13 348 667 30 345 9.97e-33 129
Msa0011510 MtrunA17_Chr2g0330781 27.647 340 183 11 31 329 30 347 3.77e-26 110
Msa0011510 MtrunA17_Chr8g0349321 31.343 335 195 10 349 670 37 349 1.41e-32 129
Msa0011510 MtrunA17_Chr8g0349321 28.923 325 181 10 32 324 37 343 5.00e-24 104
Msa0011510 MtrunA17_Chr8g0344941 30.748 361 208 12 326 667 18 355 4.82e-32 128
Msa0011510 MtrunA17_Chr8g0344941 29.213 356 189 10 10 324 19 352 5.82e-29 119
Msa0011510 MtrunA17_Chr5g0432101 27.366 391 215 17 327 683 7 362 1.62e-30 123
Msa0011510 MtrunA17_Chr4g0027521 29.107 347 200 12 348 672 26 348 7.57e-30 121
Msa0011510 MtrunA17_Chr4g0027521 25.364 343 179 11 31 324 26 340 5.12e-21 95.1
Msa0011510 MtrunA17_Chr2g0301591 34.091 264 144 9 23 261 25 283 2.43e-28 115
Msa0011510 MtrunA17_Chr2g0301591 29.866 298 161 10 328 601 10 283 3.60e-22 97.4
Msa0011510 MtrunA17_Chr8g0374101 28.378 370 222 13 323 670 12 360 4.41e-28 116
Msa0011510 MtrunA17_Chr1g0156911 29.912 341 191 12 344 663 32 345 3.28e-27 113
Msa0011510 MtrunA17_Chr1g0156911 26.062 353 198 13 16 328 21 350 2.54e-17 84.3
Msa0011510 MtrunA17_Chr3g0099161 29.714 350 201 12 348 675 91 417 1.97e-26 112
Msa0011510 MtrunA17_Chr3g0099161 26.567 335 178 14 31 321 91 401 2.62e-15 79.0
Msa0011510 MtrunA17_Chr8g0349301 32.394 284 163 9 349 619 37 304 3.08e-26 110
Msa0011510 MtrunA17_Chr8g0349301 29.568 301 161 12 32 298 37 320 3.47e-24 103
Msa0011510 MtrunA17_Chr5g0444401 28.329 353 196 13 348 673 27 349 4.09e-26 110
Msa0011510 MtrunA17_Chr5g0396511 27.635 351 207 13 351 680 48 372 5.65e-26 110
Msa0011510 MtrunA17_Chr5g0396511 26.911 327 177 12 34 320 48 352 3.28e-19 90.1
Msa0011510 MtrunA17_Chr8g0349331 28.528 326 198 10 10 324 10 311 7.24e-26 109
Msa0011510 MtrunA17_Chr8g0349331 27.348 362 193 10 319 663 2 310 2.86e-25 107
Msa0011510 MtrunA17_Chr2g0320671 27.647 340 201 12 348 667 29 343 1.30e-25 108
Msa0011510 MtrunA17_Chr2g0320671 25.806 372 206 12 1 329 1 345 6.74e-19 89.0
Msa0011510 MtrunA17_Chr5g0438631 28.691 359 206 16 329 663 6 338 2.02e-25 108
Msa0011510 MtrunA17_Chr5g0438631 26.050 357 197 11 11 324 7 339 1.67e-20 93.6
Msa0011510 MtrunA17_Chr1g0157001 27.832 309 185 11 373 667 63 347 3.24e-25 108
Msa0011510 MtrunA17_Chr4g0068441 28.608 388 219 15 312 674 2 356 3.78e-25 107
Msa0011510 MtrunA17_Chr1g0156921 27.446 368 212 17 323 661 8 349 3.91e-25 107
Msa0011510 MtrunA17_Chr7g0274991 28.378 370 211 14 329 671 8 350 3.95e-25 107
Msa0011510 MtrunA17_Chr3g0131321 27.714 350 207 11 347 676 32 355 9.03e-25 107
Msa0011510 MtrunA17_Chr3g0131321 24.451 364 204 9 10 324 6 347 1.71e-15 79.0
Msa0011510 MtrunA17_Chr1g0156931 28.371 356 201 14 333 667 30 352 1.34e-24 106
Msa0011510 MtrunA17_Chr2g0301641 28.779 344 204 14 349 673 43 364 1.67e-24 106
Msa0011510 MtrunA17_Chr2g0301641 27.100 369 200 14 1 324 11 355 7.36e-23 101
Msa0011510 MtrunA17_Chr3g0120861 27.606 355 204 16 342 672 31 356 4.11e-24 104
Msa0011510 MtrunA17_Chr3g0120861 28.012 332 167 13 31 317 37 341 1.19e-22 100
Msa0011510 MtrunA17_Chr5g0405831 27.557 352 209 13 344 674 38 364 4.42e-24 104
Msa0011510 MtrunA17_Chr7g0275011 30.556 360 188 15 349 680 34 359 4.48e-24 104
Msa0011510 MtrunA17_Chr7g0275011 25.208 361 193 14 7 321 12 341 4.03e-15 77.8
Msa0011510 MtrunA17_Chr7g0275001 29.360 344 197 14 349 671 25 343 4.84e-24 104
Msa0011510 MtrunA17_Chr5g0438641 28.226 372 210 15 317 663 2 341 5.99e-24 103
Msa0011510 MtrunA17_Chr5g0438641 26.807 332 171 10 31 317 31 335 4.56e-20 92.4
Msa0011510 MtrunA17_Chr5g0438621 27.945 365 201 15 323 662 11 338 6.89e-24 103
Msa0011510 MtrunA17_Chr5g0405821 30.422 332 188 16 348 659 42 350 7.47e-24 103
Msa0011510 MtrunA17_Chr5g0405821 26.420 352 192 13 11 319 23 350 3.50e-19 90.1
Msa0011510 MtrunA17_Chr3g0104831 29.897 291 161 11 410 677 29 299 7.84e-24 102
Msa0011510 MtrunA17_Chr3g0104831 36.691 139 74 3 191 324 157 286 7.80e-17 82.0
Msa0011510 MtrunA17_Chr1g0156891 27.397 365 209 14 324 661 15 350 8.83e-24 103
Msa0011510 MtrunA17_Chr3g0099231 29.143 350 202 14 348 675 27 352 1.24e-23 103
Msa0011510 MtrunA17_Chr2g0294301 28.406 345 205 12 349 674 35 356 1.44e-23 103
Msa0011510 MtrunA17_Chr2g0285061 26.247 381 232 12 323 681 8 361 1.47e-23 103
Msa0011510 MtrunA17_Chr2g0285061 26.347 334 178 9 31 321 31 339 3.08e-20 93.2
Msa0011510 MtrunA17_Chr1g0156901 26.230 366 210 14 323 661 24 356 1.57e-23 103
Msa0011510 MtrunA17_Chr3g0099151 27.714 350 197 12 348 670 86 406 1.89e-23 103
Msa0011510 MtrunA17_Chr8g0371481 27.714 350 199 14 343 667 35 355 2.27e-23 102
Msa0011510 MtrunA17_Chr8g0371481 23.099 355 194 12 16 321 25 349 5.86e-12 67.8
Msa0011510 MtrunA17_Chr4g0046151 28.721 383 199 19 329 670 17 366 2.27e-23 102
Msa0011510 MtrunA17_Chr4g0046151 26.446 363 184 15 10 319 16 348 4.08e-18 86.7
Msa0011510 MtrunA17_Chr8g0380041 25.852 352 217 10 348 680 30 356 4.41e-23 101
Msa0011510 MtrunA17_Chr8g0380041 26.426 333 176 10 31 320 30 336 6.38e-17 83.2
Msa0011510 MtrunA17_Chr2g0283191 26.133 375 214 15 323 664 13 357 4.85e-23 101
Msa0011510 MtrunA17_Chr2g0294311 27.649 387 212 17 322 674 9 361 7.73e-23 100
Msa0011510 MtrunA17_Chr2g0294311 27.500 360 190 15 10 320 10 347 7.38e-19 89.0
Msa0011510 MtrunA17_Chr6g0457921 27.778 378 220 15 324 675 3 353 8.09e-23 100
Msa0011510 MtrunA17_Chr6g0457921 25.479 365 197 14 4 321 1 337 7.89e-16 79.7
Msa0011510 MtrunA17_Chr3g0142941 28.986 345 198 14 333 659 36 351 1.52e-22 100
Msa0011510 MtrunA17_Chr1g0182811 29.058 382 215 15 323 680 11 360 2.31e-22 99.8
Msa0011510 MtrunA17_Chr3g0105401 27.941 340 193 14 348 663 27 338 4.97e-22 98.2
Msa0011510 MtrunA17_Chr3g0105401 26.225 347 178 13 31 329 27 343 7.69e-18 85.9
Msa0011510 MtrunA17_Chr4g0008851 27.056 377 223 16 326 680 13 359 5.54e-22 98.6
Msa0011510 MtrunA17_Chr8g0371471 27.557 352 196 17 343 667 35 354 7.32e-22 97.8
Msa0011510 MtrunA17_Chr3g0086641 26.849 365 212 14 323 663 13 346 8.71e-22 97.8
Msa0011510 MtrunA17_Chr3g0086641 25.843 356 193 10 7 320 17 343 2.22e-18 87.8
Msa0011510 MtrunA17_Chr2g0301551 29.450 309 156 13 395 677 37 309 9.55e-22 96.7
Msa0011510 MtrunA17_Chr2g0301551 26.190 294 136 10 78 324 37 296 1.72e-19 90.1
Msa0011510 MtrunA17_Chr3g0092131 26.486 370 206 17 327 667 4 336 1.16e-21 97.4
Msa0011510 MtrunA17_Chr3g0092131 25.824 364 193 16 7 324 1 333 2.77e-18 87.4
Msa0011510 MtrunA17_Chr8g0344931 28.614 332 169 9 32 324 37 339 1.72e-21 96.7
Msa0011510 MtrunA17_Chr8g0344931 29.919 371 206 13 325 670 4 345 1.78e-20 94.0
Msa0011510 MtrunA17_Chr7g0275021 28.940 349 191 15 349 671 34 351 2.84e-21 96.3
Msa0011510 MtrunA17_Chr7g0275021 25.762 361 191 13 7 321 12 341 5.01e-15 77.4
Msa0011510 MtrunA17_Chr3g0077581 26.239 343 222 10 348 675 35 361 2.87e-21 96.3
Msa0011510 MtrunA17_Chr2g0301571 29.338 317 160 14 395 685 37 315 6.62e-21 94.4
Msa0011510 MtrunA17_Chr2g0301571 26.190 294 136 10 78 324 37 296 1.55e-19 90.1
Msa0011510 MtrunA17_Chr3g0142921 26.269 335 204 11 344 659 31 341 9.14e-21 94.7
Msa0011510 MtrunA17_Chr1g0189891 30.226 354 192 16 349 680 29 349 1.75e-20 94.0
Msa0011510 MtrunA17_Chr3g0077571 26.757 370 232 14 323 680 8 350 2.00e-20 93.6
Msa0011510 MtrunA17_Chr3g0077571 25.762 361 197 12 2 323 6 334 2.47e-18 87.4
Msa0011510 MtrunA17_Chr5g0434621 26.452 310 180 11 381 672 62 341 2.24e-20 93.2
Msa0011510 MtrunA17_Chr1g0189931 28.895 353 186 14 349 671 32 349 3.02e-20 93.2
Msa0011510 MtrunA17_Chr3g0104801 41.803 122 66 2 30 146 42 163 1.25e-19 87.0
Msa0011510 MtrunA17_Chr3g0104801 38.583 127 65 5 347 461 42 167 6.40e-15 73.6
Msa0011510 MtrunA17_Chr5g0420811 25.549 364 214 13 320 662 3 330 1.11e-18 88.2
Msa0011510 MtrunA17_Chr5g0420811 25.413 303 173 10 7 271 6 293 9.08e-16 79.3
Msa0011510 MtrunA17_Chr4g0027571 28.634 227 128 7 459 667 3 213 2.32e-18 84.7
Msa0011510 MtrunA17_Chr5g0437421 24.277 346 213 12 348 670 31 350 6.06e-18 86.3
Msa0011510 MtrunA17_Chr7g0215961 26.075 372 210 15 322 671 9 337 2.11e-17 84.3
Msa0011510 MtrunA17_Chr4g0060811 25.000 296 188 11 384 667 67 340 2.97e-17 84.3
Msa0011510 MtrunA17_Chr4g0017431 25.485 361 212 14 328 662 10 339 3.76e-17 84.0
Msa0011510 MtrunA17_Chr3g0085231 25.278 360 196 11 348 680 30 343 8.59e-17 82.4
Msa0011510 MtrunA17_Chr7g0229581 32.298 161 85 4 521 671 4 150 1.71e-16 77.4
Msa0011510 MtrunA17_Chr8g0371491 25.352 355 220 13 329 663 16 345 1.73e-16 81.6
Msa0011510 MtrunA17_Chr7g0273111 48.780 82 41 1 5 85 8 89 2.18e-16 75.5
Msa0011510 MtrunA17_Chr1g0178931 24.138 348 207 15 341 667 27 338 7.28e-16 79.7
Msa0011510 MtrunA17_Chr7g0266061 25.378 331 205 11 350 667 43 344 7.45e-16 79.7
Msa0011510 MtrunA17_Chr8g0370981 26.150 413 224 18 319 671 13 404 1.70e-15 79.3
Msa0011510 MtrunA17_Chr3g0085881 25.758 330 197 13 348 662 32 328 1.82e-15 78.6
Msa0011510 MtrunA17_Chr2g0284921 25.672 335 199 11 348 663 33 336 1.87e-15 78.6
Msa0011510 MtrunA17_Chr2g0284951 25.208 361 209 12 326 662 7 330 7.39e-15 77.0
Msa0011510 MtrunA17_Chr1g0198351 23.457 324 210 11 341 654 35 330 5.29e-14 73.9
Msa0011510 MtrunA17_Chr2g0285001 24.251 367 211 15 325 663 9 336 8.21e-14 73.9
Msa0011510 MtrunA17_Chr2g0285001 24.586 362 179 14 10 318 11 331 2.29e-13 72.4
Msa0011510 MtrunA17_Chr2g0284991 24.202 376 227 14 325 675 9 351 9.68e-14 73.6
Msa0011510 MtrunA17_Chr1g0178941 24.167 360 204 17 339 667 28 349 1.96e-13 72.4
Msa0011510 MtrunA17_Chr6g0459921 23.308 266 167 7 439 681 106 357 3.15e-13 71.6
Msa0011510 MtrunA17_Chr8g0380031 27.426 237 140 9 348 570 83 301 1.10e-12 70.5
Msa0011510 MtrunA17_Chr5g0440501 24.409 254 151 9 444 678 6 237 2.57e-12 67.4
Msa0011510 MtrunA17_Chr6g0455661 25.381 197 123 5 478 663 267 450 2.57e-12 69.7
Msa0011510 MtrunA17_Chr8g0370951 23.980 392 217 16 319 670 2 352 3.01e-12 68.9
Msa0011510 MtrunA17_Chr2g0301561 28.448 232 128 10 395 602 37 254 3.27e-12 67.4
Msa0011510 MtrunA17_Chr1g0198381 23.353 334 211 12 350 669 3 305 4.36e-12 67.8
Msa0011510 MtrunA17_Chr3g0106911 33.333 156 82 7 375 527 8 144 1.02e-11 65.1
Msa0011510 MtrunA17_Chr1g0198391 24.377 361 195 16 344 664 28 350 4.61e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011510 AT3G26430.1 50.133 377 175 3 322 685 4 380 7.96e-129 386
Msa0011510 AT3G26430.1 51.227 326 123 2 28 317 27 352 5.77e-111 340
Msa0011510 AT1G67830.1 50.141 355 156 5 345 686 26 372 5.28e-121 366
Msa0011510 AT1G67830.1 49.245 331 132 2 27 321 25 355 2.29e-110 338
Msa0011510 AT5G14450.1 46.400 375 182 5 327 686 19 389 2.93e-112 344
Msa0011510 AT5G14450.1 45.646 379 162 5 5 345 14 386 1.56e-105 327
Msa0011510 AT3G27950.1 45.358 377 169 10 328 683 10 370 1.15e-92 293
Msa0011510 AT3G27950.1 39.948 383 178 8 4 347 3 372 4.03e-79 257
Msa0011510 AT1G54790.1 42.703 370 190 10 323 676 6 369 5.18e-86 275
Msa0011510 AT1G54790.1 37.363 364 180 8 2 324 1 357 4.31e-69 231
Msa0011510 AT1G54790.3 42.779 367 188 10 326 676 10 370 9.82e-85 272
Msa0011510 AT1G54790.3 40.449 356 163 9 11 324 10 358 2.23e-74 245
Msa0011510 AT1G56670.1 40.691 376 192 9 323 685 16 373 1.83e-82 266
Msa0011510 AT1G56670.1 36.898 374 176 11 6 338 10 364 2.43e-62 213
Msa0011510 AT4G01130.1 40.160 376 208 6 321 683 9 380 9.66e-82 264
Msa0011510 AT4G01130.1 36.096 374 200 4 8 345 10 380 6.00e-73 241
Msa0011510 AT1G54790.2 39.899 396 190 11 323 676 6 395 3.22e-80 261
Msa0011510 AT1G54790.2 34.872 390 180 9 2 324 1 383 1.57e-63 217
Msa0011510 AT1G09390.1 40.576 382 197 9 316 683 3 368 8.54e-80 259
Msa0011510 AT1G09390.1 39.130 345 154 9 31 338 36 361 6.65e-64 216
Msa0011510 AT3G05180.1 41.026 351 186 7 346 680 33 378 2.16e-74 244
Msa0011510 AT3G05180.1 41.888 339 153 7 29 328 33 366 9.79e-70 232
Msa0011510 AT3G62280.1 40.401 349 173 11 348 681 35 363 4.77e-69 230
Msa0011510 AT3G62280.1 36.982 338 155 8 22 321 26 343 7.89e-54 189
Msa0011510 AT4G01130.2 41.414 297 152 8 321 602 9 298 7.73e-63 213
Msa0011510 AT4G01130.2 35.517 290 151 2 8 262 10 298 1.60e-52 184
Msa0011510 AT1G56670.2 40.753 292 151 6 323 602 16 297 1.87e-59 202
Msa0011510 AT1G56670.2 35.714 294 142 6 8 262 12 297 2.45e-44 161
Msa0011510 AT4G01130.3 37.627 295 170 5 402 683 1 294 3.62e-55 191
Msa0011510 AT4G01130.3 31.650 297 164 4 85 345 1 294 3.91e-43 157
Msa0011510 AT1G28600.1 35.616 365 190 11 346 685 28 372 2.64e-54 191
Msa0011510 AT1G28600.1 34.584 373 175 12 1 324 1 353 3.56e-47 172
Msa0011510 AT1G28650.1 35.000 380 202 11 324 675 9 371 1.28e-52 186
Msa0011510 AT1G28650.1 33.784 370 172 10 7 324 12 360 1.49e-46 170
Msa0011510 AT1G28580.1 33.596 381 207 10 325 676 9 372 3.14e-52 186
Msa0011510 AT1G28580.1 30.854 363 186 8 10 324 15 360 1.12e-41 156
Msa0011510 AT1G31550.2 34.366 355 192 9 346 676 33 370 5.88e-49 177
Msa0011510 AT1G31550.2 34.188 351 168 9 21 324 24 358 3.95e-46 169
Msa0011510 AT1G28640.1 32.474 388 211 9 319 675 2 369 1.47e-48 176
Msa0011510 AT1G28640.1 32.075 371 186 8 7 328 9 362 3.98e-46 169
Msa0011510 AT1G28670.1 33.679 386 210 11 319 675 2 370 6.98e-48 173
Msa0011510 AT1G28670.1 32.153 367 184 10 7 324 9 359 1.83e-43 161
Msa0011510 AT5G45910.1 35.278 360 184 13 347 675 28 369 7.76e-48 173
Msa0011510 AT5G45910.1 35.092 379 166 15 1 324 5 358 2.13e-44 163
Msa0011510 AT3G62280.2 39.273 275 141 8 348 608 35 297 1.30e-47 170
Msa0011510 AT3G62280.2 35.816 282 132 5 22 266 26 295 5.11e-39 146
Msa0011510 AT1G28590.1 32.454 379 214 8 323 676 10 371 7.96e-47 171
Msa0011510 AT1G28590.1 32.687 361 181 10 10 324 15 359 2.41e-44 164
Msa0011510 AT1G31550.1 33.333 354 194 9 346 676 33 367 2.37e-45 167
Msa0011510 AT1G31550.1 33.618 351 167 10 21 324 24 355 7.95e-43 159
Msa0011510 AT1G28610.2 32.626 377 211 11 324 675 6 364 1.99e-44 164
Msa0011510 AT1G28610.2 30.790 367 188 11 5 324 6 353 1.94e-41 155
Msa0011510 AT1G28570.1 31.008 387 219 11 319 676 2 369 1.80e-43 161
Msa0011510 AT1G28570.1 31.063 367 186 9 7 324 9 357 1.69e-41 155
Msa0011510 AT2G27360.1 31.362 389 219 12 322 683 7 374 5.72e-43 160
Msa0011510 AT2G27360.1 31.956 363 187 8 7 324 10 357 6.70e-43 160
Msa0011510 AT1G28660.2 31.783 387 214 12 319 675 2 368 5.45e-42 157
Msa0011510 AT1G28660.2 31.492 362 191 11 7 324 9 357 4.89e-41 154
Msa0011510 AT1G28660.1 31.405 363 191 11 7 324 9 358 7.34e-42 157
Msa0011510 AT1G28660.1 32.216 388 212 13 319 675 2 369 1.81e-41 155
Msa0011510 AT3G48460.1 28.852 357 202 9 347 675 36 368 8.04e-37 142
Msa0011510 AT3G48460.1 29.330 358 208 8 6 328 14 361 6.85e-34 134
Msa0011510 AT1G28580.2 31.229 301 171 8 395 676 8 291 3.71e-36 139
Msa0011510 AT1G28580.2 26.712 292 155 6 75 324 5 279 2.67e-22 98.6
Msa0011510 AT3G16370.1 29.882 338 189 12 348 663 29 340 9.94e-29 118
Msa0011510 AT3G16370.1 28.909 339 170 13 31 324 29 341 7.72e-24 103
Msa0011510 AT5G40990.1 28.763 372 226 12 320 670 4 357 7.52e-28 116
Msa0011510 AT5G40990.1 25.753 365 211 11 1 324 6 351 3.52e-21 96.7
Msa0011510 AT5G03820.1 28.116 345 195 13 348 667 32 348 1.43e-27 115
Msa0011510 AT5G03820.1 26.567 335 178 10 31 321 32 342 6.31e-22 98.6
Msa0011510 AT5G03820.2 27.344 384 218 15 313 667 25 376 2.41e-27 115
Msa0011510 AT5G03820.2 26.488 336 177 11 31 321 60 370 1.45e-21 97.8
Msa0011510 AT1G75900.1 28.107 338 195 12 347 663 41 351 5.70e-27 113
Msa0011510 AT1G75900.1 24.189 339 184 10 30 323 41 351 2.23e-14 75.9
Msa0011510 AT4G10950.2 27.401 354 210 12 348 680 70 397 6.83e-27 114
Msa0011510 AT4G10950.2 27.545 334 172 14 31 320 70 377 7.79e-20 92.8
Msa0011510 AT1G53920.1 27.859 341 205 10 335 657 34 351 1.17e-26 113
Msa0011510 AT1G53920.1 25.698 358 201 10 4 317 15 351 6.77e-24 104
Msa0011510 AT1G59406.1 28.177 362 214 13 325 667 6 340 1.29e-26 112
Msa0011510 AT1G59030.1 28.177 362 214 13 325 667 6 340 1.29e-26 112
Msa0011510 AT1G58725.1 28.177 362 214 13 325 667 6 340 1.29e-26 112
Msa0011510 AT5G22810.1 28.448 348 191 13 348 667 33 350 2.13e-26 111
Msa0011510 AT5G22810.1 27.844 334 182 10 31 324 33 347 3.60e-21 96.3
Msa0011510 AT5G45670.1 26.870 361 220 11 322 663 3 338 2.88e-26 111
Msa0011510 AT5G45670.1 25.281 356 206 7 4 320 1 335 5.70e-20 92.8
Msa0011510 AT1G71120.1 28.531 354 205 11 336 670 18 342 4.07e-26 110
Msa0011510 AT1G71120.1 26.197 355 183 10 11 324 20 336 1.14e-22 100
Msa0011510 AT2G23540.1 27.401 354 195 13 349 670 48 371 1.12e-25 110
Msa0011510 AT2G23540.1 26.776 366 190 16 9 320 20 361 2.98e-17 84.7
Msa0011510 AT3G14225.1 31.195 343 197 13 349 670 37 361 2.50e-25 108
Msa0011510 AT3G14225.1 25.753 365 211 11 14 338 19 363 1.23e-15 79.7
Msa0011510 AT5G03810.1 25.862 348 198 13 348 667 29 344 2.80e-25 108
Msa0011510 AT3G14225.2 31.579 342 193 13 349 670 37 357 3.24e-25 108
Msa0011510 AT3G14225.2 25.479 365 208 9 14 338 19 359 1.25e-15 79.7
Msa0011510 AT3G50400.1 28.409 352 199 14 347 670 32 358 3.38e-25 108
Msa0011510 AT5G42170.1 27.826 345 199 13 344 667 45 360 6.88e-25 107
Msa0011510 AT1G53940.2 30.702 342 196 13 349 670 39 359 1.01e-24 107
Msa0011510 AT1G53940.2 26.463 393 214 15 11 353 8 375 1.13e-18 89.0
Msa0011510 AT5G08460.1 27.559 381 223 15 327 681 28 381 1.34e-24 107
Msa0011510 AT5G08460.1 26.722 363 180 13 9 318 28 357 5.39e-20 93.2
Msa0011510 AT1G28570.2 30.061 326 171 12 7 324 9 285 1.67e-24 105
Msa0011510 AT1G28570.2 25.694 288 181 10 406 676 26 297 1.33e-19 90.9
Msa0011510 AT4G10950.1 27.119 354 207 13 348 680 70 393 2.29e-24 106
Msa0011510 AT4G10950.1 26.946 334 170 14 31 320 70 373 2.42e-17 85.1
Msa0011510 AT4G26790.1 26.453 344 202 14 347 667 27 342 2.81e-24 105
Msa0011510 AT4G26790.1 26.220 328 180 10 30 317 27 332 7.43e-19 89.4
Msa0011510 AT4G26790.2 26.453 344 202 14 347 667 27 342 2.81e-24 105
Msa0011510 AT4G26790.2 26.220 328 180 10 30 317 27 332 7.43e-19 89.4
Msa0011510 AT1G28600.2 36.574 216 114 8 1 205 1 204 4.34e-24 101
Msa0011510 AT1G28600.2 36.364 187 99 5 346 522 28 204 1.81e-21 94.0
Msa0011510 AT1G20120.1 29.526 359 199 16 342 674 71 401 9.05e-24 104
Msa0011510 AT2G42990.1 27.838 370 211 15 323 666 1 340 9.32e-24 103
Msa0011510 AT3G04290.1 29.060 351 188 13 349 671 29 346 1.27e-23 103
Msa0011510 AT5G63170.1 28.045 353 203 13 324 659 3 321 1.50e-23 102
Msa0011510 AT5G45960.1 29.897 291 165 13 349 614 47 323 2.07e-23 103
Msa0011510 AT4G18970.1 25.970 335 205 10 348 663 27 337 6.02e-23 101
Msa0011510 AT4G18970.1 24.316 329 189 7 31 320 27 334 2.53e-16 81.6
Msa0011510 AT2G30310.1 26.822 343 200 11 341 659 26 341 1.06e-22 100
Msa0011510 AT5G45950.1 26.254 339 197 13 349 666 40 346 1.15e-22 100
Msa0011510 AT3G43570.1 25.634 355 208 11 323 667 3 311 1.20e-22 99.8
Msa0011510 AT4G18970.2 25.970 335 205 10 348 663 27 337 1.32e-22 101
Msa0011510 AT4G18970.2 24.316 329 189 7 31 320 27 334 2.14e-16 82.4
Msa0011510 AT1G58430.1 27.645 293 171 10 347 614 33 309 2.55e-22 99.8
Msa0011510 AT2G04570.1 26.053 380 211 15 324 672 6 346 2.82e-22 99.4
Msa0011510 AT1G29670.1 25.281 356 220 12 328 663 10 339 3.08e-22 99.4
Msa0011510 AT1G54030.1 29.110 292 154 8 381 660 87 337 3.27e-22 100
Msa0011510 AT1G54030.1 24.359 312 183 10 33 319 53 336 2.81e-13 72.8
Msa0011510 AT1G06990.1 25.074 339 206 13 347 663 35 347 3.56e-22 99.4
Msa0011510 AT2G31540.1 25.765 392 219 19 318 672 2 358 3.87e-22 99.4
Msa0011510 AT5G15720.1 25.595 336 207 10 348 663 29 341 4.21e-22 99.0
Msa0011510 AT5G15720.1 23.669 338 184 9 31 321 29 339 3.84e-17 84.3
Msa0011510 AT2G30220.1 26.471 340 197 13 347 661 31 342 4.71e-22 99.0
Msa0011510 AT3G53100.1 26.420 352 202 14 342 667 22 342 5.54e-22 98.6
Msa0011510 AT1G33811.1 25.816 337 208 11 348 663 33 348 1.02e-21 98.2
Msa0011510 AT1G29670.2 25.137 366 229 11 317 663 68 407 1.18e-21 99.0
Msa0011510 AT1G20130.1 26.879 346 205 13 343 663 198 520 1.34e-21 99.8
Msa0011510 AT2G24560.1 27.224 371 210 16 318 659 2 341 1.40e-21 97.4
Msa0011510 AT1G20130.2 26.879 346 205 13 343 663 178 500 1.59e-21 99.4
Msa0011510 AT5G18430.1 28.571 343 200 12 349 670 28 346 2.01e-21 97.1
Msa0011510 AT5G18430.1 23.288 365 203 13 4 323 7 339 3.27e-15 78.2
Msa0011510 AT4G28780.1 26.901 342 207 11 349 671 31 348 2.17e-21 97.1
Msa0011510 AT1G53990.1 28.065 367 218 14 325 670 7 348 3.88e-21 96.3
Msa0011510 AT5G37690.1 27.778 306 171 14 381 667 64 338 5.20e-21 95.9
Msa0011510 AT1G58520.3 27.859 341 197 14 344 667 25 333 6.58e-21 95.1
Msa0011510 AT1G58525.1 27.859 341 197 14 344 667 25 333 6.58e-21 95.1
Msa0011510 AT5G03610.1 26.220 328 203 12 350 664 44 345 6.63e-21 95.5
Msa0011510 AT1G75880.2 27.945 365 213 16 328 667 26 365 1.11e-20 95.1
Msa0011510 AT1G75880.1 27.869 366 213 17 328 667 26 366 1.34e-20 94.7
Msa0011510 AT1G28610.1 34.123 211 117 7 5 205 6 204 2.21e-20 91.7
Msa0011510 AT1G28610.1 34.783 184 100 5 342 515 24 197 5.89e-19 87.4
Msa0011510 AT1G54000.1 26.542 373 223 15 325 680 12 350 2.43e-20 94.4
Msa0011510 AT1G54010.1 27.005 374 220 14 325 680 12 350 2.79e-20 94.0
Msa0011510 AT5G33370.1 28.080 349 194 15 349 671 30 347 4.42e-20 93.2
Msa0011510 AT1G73610.1 27.729 339 197 12 344 667 30 335 5.02e-20 92.4
Msa0011510 AT1G54020.2 25.956 366 223 11 328 680 12 342 5.86e-20 92.8
Msa0011510 AT1G54020.2 26.197 355 190 11 5 321 4 324 1.95e-16 82.0
Msa0011510 AT1G71691.2 26.741 359 212 14 337 673 41 370 7.55e-20 92.8
Msa0011510 AT1G71691.2 25.915 328 189 9 31 324 54 361 2.58e-16 82.0
Msa0011510 AT1G75890.3 25.773 388 235 14 302 663 26 386 1.01e-19 92.4
Msa0011510 AT1G28570.3 29.412 204 121 6 488 676 11 206 1.29e-19 89.0
Msa0011510 AT1G28570.3 26.562 192 95 4 171 324 11 194 7.76e-15 74.7
Msa0011510 AT3G43550.1 28.667 300 178 12 323 602 3 286 1.70e-19 90.1
Msa0011510 AT1G20132.1 25.872 344 194 13 348 663 60 370 1.78e-19 91.7
Msa0011510 AT1G75890.2 26.862 376 221 15 314 663 10 357 2.31e-19 90.9
Msa0011510 AT1G20135.1 26.099 364 215 12 317 664 2 327 2.83e-19 90.1
Msa0011510 AT1G75930.1 27.148 291 180 8 341 611 21 299 6.98e-19 89.0
Msa0011510 AT1G74460.1 28.443 334 192 16 351 663 25 332 9.26e-19 89.0
Msa0011510 AT1G23500.1 29.474 285 161 10 349 611 35 301 1.27e-18 88.6
Msa0011510 AT1G29660.1 25.137 366 228 13 317 663 2 340 1.72e-18 88.2
Msa0011510 AT1G71250.1 25.067 375 226 12 327 676 15 359 2.01e-18 88.2
Msa0011510 AT3G14220.1 24.668 377 217 16 320 670 2 337 2.87e-18 87.4
Msa0011510 AT1G75890.1 27.249 389 216 16 314 663 10 370 2.99e-18 87.8
Msa0011510 AT3G14820.1 25.449 334 212 12 348 667 31 341 4.01e-18 87.0
Msa0011510 AT3G14820.1 26.537 309 163 10 9 274 12 299 4.70e-17 84.0
Msa0011510 AT2G40250.1 26.990 289 176 12 349 614 36 312 4.25e-18 87.0
Msa0011510 AT5G03980.1 28.272 191 111 5 488 663 127 306 5.20e-18 86.3
Msa0011510 AT5G03980.1 26.316 190 95 4 171 324 127 307 1.63e-14 75.9
Msa0011510 AT2G24560.2 27.848 316 180 14 318 604 2 298 1.03e-17 85.1
Msa0011510 AT2G03980.2 26.686 341 191 15 346 660 40 347 1.99e-17 85.1
Msa0011510 AT2G03980.3 26.686 341 191 15 346 660 40 347 1.99e-17 85.1
Msa0011510 AT2G03980.1 26.686 341 191 15 346 660 40 347 1.99e-17 85.1
Msa0011510 AT2G03980.4 26.686 341 191 15 346 660 40 347 1.99e-17 85.1
Msa0011510 AT2G19010.1 25.429 350 200 13 348 675 29 339 2.55e-17 84.3
Msa0011510 AT1G53940.1 31.752 274 152 11 349 602 39 297 3.05e-17 83.6
Msa0011510 AT1G53940.1 26.490 302 160 10 11 262 8 297 1.00e-11 67.0
Msa0011510 AT2G19010.2 25.429 350 200 13 348 675 59 369 5.47e-17 84.0
Msa0011510 AT2G04020.1 30.806 211 128 8 346 549 40 239 1.21e-16 80.9
Msa0011510 AT1G75910.1 25.939 293 176 9 344 611 23 299 1.38e-16 82.4
Msa0011510 AT2G19060.1 25.779 353 197 12 348 675 29 341 1.67e-16 82.0
Msa0011510 AT2G04020.2 30.806 211 128 8 346 549 40 239 2.19e-16 81.3
Msa0011510 AT5G55050.1 29.248 359 190 16 343 669 33 359 2.71e-16 81.6
Msa0011510 AT5G37690.2 26.471 306 167 15 381 667 64 330 3.29e-16 81.3
Msa0011510 AT5G03600.1 25.602 332 196 12 348 664 13 308 7.02e-16 79.7
Msa0011510 AT5G03600.2 25.602 332 196 12 348 664 48 343 1.07e-15 79.7
Msa0011510 AT5G15720.3 23.529 306 189 9 375 663 33 310 1.14e-15 79.3
Msa0011510 AT1G71691.3 27.431 288 170 12 337 602 41 311 1.85e-15 78.6
Msa0011510 AT1G71691.3 25.632 277 164 7 20 262 43 311 2.63e-13 72.0
Msa0011510 AT4G16230.1 28.517 263 148 11 325 567 4 246 2.35e-15 77.0
Msa0011510 AT5G15720.2 25.091 275 175 8 348 602 29 292 3.02e-15 77.8
Msa0011510 AT5G15720.2 22.917 288 160 7 22 262 20 292 4.92e-13 71.2
Msa0011510 AT4G30140.1 27.011 348 195 14 348 675 32 340 6.18e-15 77.4
Msa0011510 AT3G09930.2 24.316 329 209 13 350 664 40 342 6.47e-15 77.4
Msa0011510 AT3G09930.1 24.316 329 209 13 350 664 40 342 6.47e-15 77.4
Msa0011510 AT1G75920.2 25.484 310 189 12 328 611 6 299 2.60e-14 75.5
Msa0011510 AT5G41890.1 24.762 315 184 14 383 670 71 359 3.16e-14 75.5
Msa0011510 AT3G14210.1 24.706 340 208 11 339 661 26 334 1.91e-13 73.2
Msa0011510 AT1G54030.2 29.756 205 109 6 381 577 87 264 2.18e-13 72.0
Msa0011510 AT1G71691.1 24.497 298 179 12 393 673 1 269 1.00e-12 69.7
Msa0011510 AT2G31550.1 26.012 173 102 6 513 672 58 217 7.01e-12 65.9
Msa0011510 AT5G33370.2 29.084 251 137 12 349 577 30 261 1.10e-11 67.0
Msa0011510 AT1G54020.1 24.483 290 176 9 400 680 1 256 1.78e-11 65.9
Msa0011510 AT1G54020.5 24.483 290 176 9 400 680 1 256 1.78e-11 65.9
Msa0011510 AT1G54020.3 24.483 290 176 9 400 680 1 256 1.78e-11 65.9
Msa0011510 AT1G75920.1 24.308 325 189 13 328 611 1 309 5.33e-11 65.5

Find 145 sgRNAs with CRISPR-Local

Find 594 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCTTTGTAGCAAATAT+TGG 0.178924 1_1:-17383336 None:intergenic
TATAAAATTCTTTACTATAT+CGG 0.214825 1_1:-17386158 None:intergenic
ACCAATATCAAATGTGTATA+AGG 0.220968 1_1:-17386071 None:intergenic
TACTGAATTTGAAGGGAAAA+TGG 0.224045 1_1:-17385825 None:intergenic
TGGATGTGTGCCTTTAATTT+TGG 0.224209 1_1:+17386414 Msa0011510:CDS
AACCATCTACTAGAATAATA+TGG 0.227325 1_1:+17386878 Msa0011510:CDS
AGCGCATATCTTGATTCTTT+GGG 0.238639 1_1:+17379040 Msa0011510:CDS
TGTCTAATGAATTGTGTTCT+AGG 0.252829 1_1:-17379196 None:intergenic
TTTGGAATAATAATCTTCTT+TGG 0.255011 1_1:-17386047 None:intergenic
AAGCGCATATCTTGATTCTT+TGG 0.258296 1_1:+17379039 Msa0011510:CDS
AATTAGGGGCCAGGTCATTT+TGG 0.264269 1_1:+17386371 Msa0011510:CDS
CCATTGGGTATAATACTATT+AGG 0.269389 1_1:-17385792 None:intergenic
GTAATTTCAGCTCAAAGTTT+TGG 0.272793 1_1:+17379004 Msa0011510:intron
GGAAAATTGGCCAAAATTAA+AGG 0.273646 1_1:-17386424 None:intergenic
ATCTAGAATATATACAAATT+AGG 0.275565 1_1:+17386355 Msa0011510:intron
TTCCCTGCAATCTTCAACTT+TGG 0.275888 1_1:+17377638 Msa0011510:CDS
AATTCTTTGTAGCAAATATT+GGG 0.277876 1_1:-17383335 None:intergenic
TCTAGAATATATACAAATTA+GGG 0.278589 1_1:+17386356 Msa0011510:intron
TTCTTTATATTAGACATATA+TGG 0.280042 1_1:+17387081 Msa0011510:three_prime_UTR
CTTTATAGCAGATGGAAAAT+TGG 0.280511 1_1:-17386437 None:intergenic
TTGGAATAATAATCTTCTTT+GGG 0.286703 1_1:-17386046 None:intergenic
TCCCATATTATTCTAGTAGA+TGG 0.294746 1_1:-17386880 None:intergenic
CGAATCATTCTTGATTTCAT+AGG 0.296923 1_1:+17383492 Msa0011510:CDS
ATCCTCCCATTCCACTAAAT+AGG 0.303807 1_1:+17386971 Msa0011510:CDS
GCCTTATACACATTTGATAT+TGG 0.309552 1_1:+17386070 Msa0011510:CDS
TTGAGTACCATTGACCTCTA+TGG 0.311057 1_1:-17380468 None:intergenic
GGAGAAATCATAAACATAAA+TGG 0.328429 1_1:+17386826 Msa0011510:CDS
ACTTATTTCCACAGACCTAA+TGG 0.339588 1_1:+17377728 Msa0011510:CDS
GCTTTGTACACATTTGATAT+TGG 0.345019 1_1:+17379356 Msa0011510:CDS
CAAGGAAGAGTATTTCTCTA+AGG 0.350686 1_1:+17379334 Msa0011510:CDS
TTGTAACATGCCCTATTTAG+TGG 0.352126 1_1:-17386982 None:intergenic
GTCTTTGATCAAATCTCTAC+TGG 0.362400 1_1:+17386937 Msa0011510:CDS
GACCATCTGCAAGAGTGAAT+TGG 0.365145 1_1:+17380513 Msa0011510:CDS
TTAGCTGAAAAGGATGAAAA+TGG 0.366007 1_1:+17380086 Msa0011510:intron
ATAAAATTCTTTACTATATC+GGG 0.369299 1_1:-17386157 None:intergenic
ATCAAATGTGTATAAGGCTT+TGG 0.373582 1_1:-17386065 None:intergenic
CGTCTAATTGTCGATTTCAT+TGG 0.373711 1_1:+17377767 Msa0011510:CDS
TCACCAAAGTTGAAGATTGC+AGG 0.385266 1_1:-17377641 None:intergenic
CTAGTTGTTTGTTGTGGCTA+TGG 0.388133 1_1:+17380404 Msa0011510:CDS
TCCTCCCATTCCACTAAATA+GGG 0.392622 1_1:+17386972 Msa0011510:CDS
AAATGCTGATACTGGTGGTT+TGG 0.396433 1_1:+17383392 Msa0011510:CDS
GCACCAAAGTTAAATATTGC+AGG 0.407053 1_1:-17383366 None:intergenic
GAGAAACTATTGATTATCTC+TGG 0.411103 1_1:-17379443 None:intergenic
CTTAGAGAAATACTCTTCCT+TGG 0.412709 1_1:-17379333 None:intergenic
CTTATTTCCACAGACCTAAT+GGG 0.420130 1_1:+17377729 Msa0011510:CDS
GGTGCTTCAAATGCTGATAC+TGG 0.421451 1_1:+17383384 Msa0011510:CDS
AATATCTGAATTGAGTGTAT+TGG 0.424544 1_1:-17379168 None:intergenic
GATATTGGTCAAAATGATCT+TGG 0.426312 1_1:+17379371 Msa0011510:CDS
ACCATCTGCAAGAGTGAATT+GGG 0.426866 1_1:+17380514 Msa0011510:CDS
ATACACAACACTGGACCAAT+TGG 0.429145 1_1:+17386394 Msa0011510:CDS
GCAAAATTCATTAGAGATCA+AGG 0.430565 1_1:+17385876 Msa0011510:CDS
ATTAAGATATGGACTTAGGT+AGG 0.436390 1_1:-17385706 None:intergenic
CCATCAGAGAACCTCCCATT+AGG 0.438883 1_1:-17377743 None:intergenic
TTTCCTGCAATATTTAACTT+TGG 0.440023 1_1:+17383363 Msa0011510:CDS
ACCATCTACTAGAATAATAT+GGG 0.442115 1_1:+17386879 Msa0011510:CDS
GATCCTAGAGAATTAAGATA+TGG 0.444570 1_1:-17385717 None:intergenic
CAAGCACTTCAGTTGCCAAA+TGG 0.446432 1_1:+17383426 Msa0011510:CDS
TCAAGATATGCGCTTAGATA+AGG 0.460946 1_1:-17379031 None:intergenic
TTAGAGAAATACTCTTCCTT+GGG 0.465277 1_1:-17379332 None:intergenic
CCCACCTAGTATTATACCTC+AGG 0.465429 1_1:+17379117 Msa0011510:CDS
GGTCAAAATGATCTTACTGC+TGG 0.468242 1_1:+17386091 Msa0011510:CDS
TGGCTATCCTTTATAGCAGA+TGG 0.469012 1_1:-17386445 None:intergenic
CATGCCCTATTTAGTGGAAT+GGG 0.472312 1_1:-17386976 None:intergenic
AAACTCAGACACTGGTGGCT+TGG 0.473491 1_1:+17377667 Msa0011510:CDS
CATAGCCACAACAAACAACT+AGG 0.473839 1_1:-17380403 None:intergenic
CCACCCTGAGGTATAATACT+AGG 0.476832 1_1:-17379121 None:intergenic
CAAGATATGCGCTTAGATAA+GGG 0.482225 1_1:-17379030 None:intergenic
GTCTCTCCATATGGTGGCGT+TGG 0.483501 1_1:-17377707 None:intergenic
AGTCCATATCTTAATTCTCT+AGG 0.487332 1_1:+17385714 Msa0011510:CDS
AAATGGACTAAACATTCCAT+TGG 0.487410 1_1:-17385808 None:intergenic
ATTAAAGGCACACATCCAAT+TGG 0.488389 1_1:-17386409 None:intergenic
ACATGCCCTATTTAGTGGAA+TGG 0.489175 1_1:-17386977 None:intergenic
GAGAATTAAGATATGGACTT+AGG 0.490134 1_1:-17385710 None:intergenic
TGGAAATAAGTCTCTCCATA+TGG 0.492180 1_1:-17377716 None:intergenic
CTATGAAATCAAGAATGATT+CGG 0.493581 1_1:-17383491 None:intergenic
AAATGGTACAAACATTGTTG+TGG 0.497281 1_1:+17386843 Msa0011510:CDS
GGTGCAAACTTTGCAACAGC+AGG 0.502492 1_1:+17385753 Msa0011510:CDS
TGTATTGCTTTGCACAACCT+TGG 0.503056 1_1:-17386465 None:intergenic
AATGGTACAAACATTGTTGT+GGG 0.503607 1_1:+17386844 Msa0011510:CDS
ACATATGTGATTGCAGCTAA+AGG 0.510042 1_1:-17380191 None:intergenic
TGGCAACTGAAGTGCTTGAA+AGG 0.511071 1_1:-17383421 None:intergenic
ATTGATTGTACTGAATTTGA+AGG 0.512446 1_1:-17385833 None:intergenic
GGTCAAAATGATCTTGGTGC+TGG 0.513823 1_1:+17379377 Msa0011510:CDS
CAAGCACCAACGCCACCATA+TGG 0.515260 1_1:+17377701 Msa0011510:CDS
GATCCACACGAAGTTGAGCT+AGG 0.516606 1_1:-17386528 None:intergenic
ATATATACAAATTAGGGGCC+AGG 0.517339 1_1:+17386362 Msa0011510:CDS
CATGTGGCATGTTGTGGCTA+TGG 0.526634 1_1:+17386769 Msa0011510:CDS
AAAATAATTGTGTTAAATCG+TGG 0.526821 1_1:+17387042 Msa0011510:three_prime_UTR
TATAATTATAGCAATAGTGT+TGG 0.527004 1_1:+17380434 Msa0011510:CDS
AATGGACTAAACATTCCATT+GGG 0.529064 1_1:-17385807 None:intergenic
CATCCCCTAGTTGTTTGTTG+TGG 0.531642 1_1:+17380398 Msa0011510:CDS
ATATTTCAATCATAAGTTGA+AGG 0.539994 1_1:+17380139 Msa0011510:CDS
ATTCTTTGTAGCAAATATTG+GGG 0.543366 1_1:-17383334 None:intergenic
TATTGGACATCAAGGTAGAA+AGG 0.543537 1_1:-17379151 None:intergenic
TTAAGATATGGACTTAGGTA+GGG 0.544125 1_1:-17385705 None:intergenic
TATAGCAATAGTGTTGGATG+TGG 0.553912 1_1:+17380440 Msa0011510:CDS
TGGAATAATAATCTTCTTTG+GGG 0.555591 1_1:-17386045 None:intergenic
AGCAATAGTGTTGGATGTGG+AGG 0.556583 1_1:+17380443 Msa0011510:CDS
ACATATGTGATTGCAGCTAG+TGG 0.560723 1_1:-17386553 None:intergenic
TCCCAATTCACTCTTGCAGA+TGG 0.561326 1_1:-17380515 None:intergenic
GGTGACTCAAACTCAGACAC+TGG 0.562687 1_1:+17377659 Msa0011510:CDS
GCGCATATCTTGATTCTTTG+GGG 0.564900 1_1:+17379041 Msa0011510:CDS
TTGATTGTACTGAATTTGAA+GGG 0.569678 1_1:-17385832 None:intergenic
ATAGCCACAACAAACAACTA+GGG 0.571894 1_1:-17380402 None:intergenic
GTTGTTTGTTGTGGCTATGG+AGG 0.573272 1_1:+17380407 Msa0011510:CDS
CACCAAAGTTGAAGATTGCA+GGG 0.576163 1_1:-17377640 None:intergenic
CCTAATAGTATTATACCCAA+TGG 0.577765 1_1:+17385792 Msa0011510:CDS
ATTGAGTGTATTGGACATCA+AGG 0.579239 1_1:-17379159 None:intergenic
AGCCCTAGCTCAACTTCGTG+TGG 0.589422 1_1:+17386525 Msa0011510:CDS
CTACCACATGTGGCATGTTG+TGG 0.589804 1_1:+17386763 Msa0011510:CDS
TATAACATTCGTGCTAGATG+TGG 0.594579 1_1:+17386805 Msa0011510:CDS
CCTGAGGTATAATACTAGGT+GGG 0.598100 1_1:-17379117 None:intergenic
GCTTCAAATGCTGATACTGG+TGG 0.598979 1_1:+17383387 Msa0011510:CDS
ATTTGCAAGCTTGATGCCCA+AGG 0.600463 1_1:+17379316 Msa0011510:CDS
TCTGCAAGAGTGAATTGGGA+TGG 0.604576 1_1:+17380518 Msa0011510:CDS
CAATGAAATCGACAATTAGA+CGG 0.606252 1_1:-17377766 None:intergenic
ATCCACACGAAGTTGAGCTA+GGG 0.606515 1_1:-17386527 None:intergenic
CCCTGAGGTATAATACTAGG+TGG 0.606983 1_1:-17379118 None:intergenic
AGAACCTCCCATTAGGTCTG+TGG 0.608880 1_1:-17377736 None:intergenic
GGAGGAACCATAGAGGTCAA+TGG 0.609556 1_1:+17380461 Msa0011510:CDS
CTAGGATCAAACTTCACACA+TGG 0.612367 1_1:+17385732 Msa0011510:CDS
CTGAGGTATAATACTAGGTG+GGG 0.612955 1_1:-17379116 None:intergenic
GCCCTATTTAGTGGAATGGG+AGG 0.622277 1_1:-17386973 None:intergenic
GTGCAAACTTTGCAACAGCA+GGG 0.631688 1_1:+17385754 Msa0011510:CDS
CCTAATGGGAGGTTCTCTGA+TGG 0.634494 1_1:+17377743 Msa0011510:CDS
CCACCTAGTATTATACCTCA+GGG 0.636374 1_1:+17379118 Msa0011510:CDS
TCTACTAGAATAATATGGGA+TGG 0.641361 1_1:+17386883 Msa0011510:CDS
TTCTTTGTAGCAAATATTGG+GGG 0.645637 1_1:-17383333 None:intergenic
AGGATTTGAGCTACCACATG+TGG 0.650013 1_1:+17386753 Msa0011510:intron
GTGGCATGTTGTGGCTATGG+AGG 0.654822 1_1:+17386772 Msa0011510:CDS
GACTCAAACTCAGACACTGG+TGG 0.655403 1_1:+17377662 Msa0011510:CDS
ATTTCCACAGACCTAATGGG+AGG 0.656669 1_1:+17377732 Msa0011510:CDS
TGAGGTATAATACTAGGTGG+GGG 0.657709 1_1:-17379115 None:intergenic
TAGCCACAACATGCCACATG+TGG 0.671628 1_1:-17386766 None:intergenic
AAATAAGTCTCTCCATATGG+TGG 0.673013 1_1:-17377713 None:intergenic
ACACAATTCATTAGACAACA+AGG 0.676208 1_1:+17379202 Msa0011510:CDS
TCTGCTATAAAGGATAGCCA+AGG 0.676832 1_1:+17386448 Msa0011510:CDS
TAGCCACAACAAACAACTAG+GGG 0.679936 1_1:-17380401 None:intergenic
CTAGAATATATACAAATTAG+GGG 0.698873 1_1:+17386357 Msa0011510:intron
CCTAGTATTATACCTCAGGG+TGG 0.705655 1_1:+17379121 Msa0011510:CDS
TGGATGTGGAGGAACCATAG+AGG 0.718015 1_1:+17380454 Msa0011510:CDS
GTTGTGTATCCAAAATGACC+TGG 0.720607 1_1:-17386380 None:intergenic
ATTGCTACTTTCAATCACTG+TGG 0.728286 1_1:-17377603 None:intergenic
AAAGGACTGTATCCACCCTG+AGG 0.752311 1_1:-17379133 None:intergenic
GGATGGTACACATTACACAG+AGG 0.801423 1_1:+17386900 Msa0011510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAATAATTTTTTAATT+GGG - chr1_1:17382520-17382539 None:intergenic 0.0%
!!! TTAAAAAATAATTTTTTAAT+TGG - chr1_1:17382521-17382540 None:intergenic 0.0%
!!! ATTTTTTATAAAAAATAATA+AGG - chr1_1:17384764-17384783 None:intergenic 0.0%
!!! TTTTGTATTTTAATTAGTTA+GGG - chr1_1:17377988-17378007 None:intergenic 10.0%
!!! ATTAATATTCACATATTTTT+AGG + chr1_1:17379250-17379269 Msa0011510:intron 10.0%
!!! ATTTGATTTGTTTATATAAT+AGG - chr1_1:17379806-17379825 None:intergenic 10.0%
!!! ATTCTTCTATATATATTTTA+TGG - chr1_1:17381927-17381946 None:intergenic 10.0%
!! ATTGATTAAAATAGAAAATA+GGG - chr1_1:17382195-17382214 None:intergenic 10.0%
!! AATTGATTAAAATAGAAAAT+AGG - chr1_1:17382196-17382215 None:intergenic 10.0%
!!! AATAATAATTCGTTTTTTTA+TGG + chr1_1:17382379-17382398 Msa0011510:intron 10.0%
!!! ATTCAAAAAAAATATTTTAC+AGG + chr1_1:17382446-17382465 Msa0011510:intron 10.0%
!!! TTCAAAAAAAATATTTTACA+GGG + chr1_1:17382447-17382466 Msa0011510:intron 10.0%
!!! ATTATTATTTTTGTATAGTT+TGG - chr1_1:17382880-17382899 None:intergenic 10.0%
!!! TTTTTTTTAATTCTTTTTTG+AGG - chr1_1:17383716-17383735 None:intergenic 10.0%
!!! TATAAGAGTATTAATTAATT+CGG + chr1_1:17384591-17384610 Msa0011510:intron 10.0%
!!! TTACTAAAAATAGTTTTTTT+TGG + chr1_1:17384821-17384840 Msa0011510:intron 10.0%
!!! ATCATTATTTTATTTTTTTG+AGG + chr1_1:17385285-17385304 Msa0011510:intron 10.0%
!!! AATTATTTCTATATTTATGA+AGG + chr1_1:17385636-17385655 Msa0011510:intron 10.0%
!!! ATTATTTCTATATTTATGAA+GGG + chr1_1:17385637-17385656 Msa0011510:intron 10.0%
!! TATAAAATTCTTTACTATAT+CGG - chr1_1:17386161-17386180 None:intergenic 10.0%
!!! ATATTTTAATTTAAAGTTGA+AGG + chr1_1:17386501-17386520 Msa0011510:intron 10.0%
!!! TTTGTATTTTAATTAGTTAG+GGG - chr1_1:17377987-17378006 None:intergenic 15.0%
!!! GTTTTGTATTTTAATTAGTT+AGG - chr1_1:17377989-17378008 None:intergenic 15.0%
!! TACAATAAACAAACATAAAA+TGG - chr1_1:17378255-17378274 None:intergenic 15.0%
!!! AGTTCAATTTTTTTAAACAT+TGG - chr1_1:17378550-17378569 None:intergenic 15.0%
!! AAAAATCAAATTAAATTGAC+CGG - chr1_1:17378840-17378859 None:intergenic 15.0%
!! TGAAATTACAAATCATAAAT+TGG - chr1_1:17378993-17379012 None:intergenic 15.0%
!!! GTATGGTATTAAATAATTTT+TGG - chr1_1:17379755-17379774 None:intergenic 15.0%
!! GAAAATACACAAAAATATAA+GGG - chr1_1:17380064-17380083 None:intergenic 15.0%
!!! TGAAAAAAATTAACGTTTTT+AGG + chr1_1:17380306-17380325 Msa0011510:intron 15.0%
!!! AATGTATATTTTAACATAAG+AGG + chr1_1:17380786-17380805 Msa0011510:intron 15.0%
!!! ATGTATATTTTAACATAAGA+GGG + chr1_1:17380787-17380806 Msa0011510:intron 15.0%
!!! TTTTTTTCAATATTCTCTTT+GGG - chr1_1:17381397-17381416 None:intergenic 15.0%
!!! TTTTTTTTCAATATTCTCTT+TGG - chr1_1:17381398-17381417 None:intergenic 15.0%
!!! GTTTTTTTTTACCATATTTA+TGG - chr1_1:17381538-17381557 None:intergenic 15.0%
!!! TATTTTTTAAATCTGATCAT+TGG + chr1_1:17382000-17382019 Msa0011510:intron 15.0%
!!! TATTTGTGTAAAATTTTACA+TGG + chr1_1:17382157-17382176 Msa0011510:intron 15.0%
!! TTGATTAAAATAGAAAATAG+GGG - chr1_1:17382194-17382213 None:intergenic 15.0%
!!! AAAAAAAAAAACTTTTACAG+GGG - chr1_1:17382307-17382326 None:intergenic 15.0%
!!! GAAAAAAAAAAACTTTTACA+GGG - chr1_1:17382308-17382327 None:intergenic 15.0%
!! AAAAGAATTAAAAAAAACTG+TGG + chr1_1:17383719-17383738 Msa0011510:intron 15.0%
!!! ATTTTATCATAGAAACAATA+TGG + chr1_1:17383827-17383846 Msa0011510:intron 15.0%
!!! CGTATAAATTTTTTTTTTGA+GGG - chr1_1:17384404-17384423 None:intergenic 15.0%
!!! TCGTATAAATTTTTTTTTTG+AGG - chr1_1:17384405-17384424 None:intergenic 15.0%
!!! AAATGGTTTTTTTTTTTTTG+TGG + chr1_1:17384637-17384656 Msa0011510:intron 15.0%
!!! ATATTTTTTGTTGAGATTTA+AGG - chr1_1:17384980-17384999 None:intergenic 15.0%
!!! CGTCTTTTTATTATTATATT+TGG - chr1_1:17384995-17385014 None:intergenic 15.0%
!!! TCAATTGATTTTATCTTTAT+TGG - chr1_1:17385163-17385182 None:intergenic 15.0%
!!! TAGAATAGAAAATCTAATTT+TGG - chr1_1:17385255-17385274 None:intergenic 15.0%
!! TTACTTAACAAAAAAAAAGA+AGG - chr1_1:17385353-17385372 None:intergenic 15.0%
!! TTAAAACGAATTTAAATATG+AGG - chr1_1:17385413-17385432 None:intergenic 15.0%
!! TATATAGTGTTTATGTAAAT+GGG - chr1_1:17385553-17385572 None:intergenic 15.0%
!! GAAATTAAGAAAGAAAAAAT+TGG - chr1_1:17385987-17386006 None:intergenic 15.0%
!! ATAAAATTCTTTACTATATC+GGG - chr1_1:17386160-17386179 None:intergenic 15.0%
!!! ATCTAGAATATATACAAATT+AGG + chr1_1:17386355-17386374 Msa0011510:intron 15.0%
!!! TCTAGAATATATACAAATTA+GGG + chr1_1:17386356-17386375 Msa0011510:intron 15.0%
!! TTAAATCTTCATTAATATGT+AGG + chr1_1:17386733-17386752 Msa0011510:intron 15.0%
!! TTCTTTATATTAGACATATA+TGG + chr1_1:17387081-17387100 Msa0011510:three_prime_UTR 15.0%
!!! TGTTGAGTGTAATATATTTT+TGG + chr1_1:17377913-17377932 Msa0011510:intron 20.0%
!! AAACAAACATAAAATGGTTT+CGG - chr1_1:17378249-17378268 None:intergenic 20.0%
!!! GATTTTTTGTGAATAATTGA+AGG - chr1_1:17378701-17378720 None:intergenic 20.0%
!! TTATGAACTAAGATTGTTTA+AGG - chr1_1:17378803-17378822 None:intergenic 20.0%
!!! AAAAGGATGTTATTATGTTT+TGG - chr1_1:17378873-17378892 None:intergenic 20.0%
!!! AAAACATAATAACATCCTTT+TGG + chr1_1:17378872-17378891 Msa0011510:intron 20.0%
!!! AATATTCACATATTTTTAGG+TGG + chr1_1:17379253-17379272 Msa0011510:intron 20.0%
!! AAACCATGTCTTTATTATTA+AGG - chr1_1:17379280-17379299 None:intergenic 20.0%
!! TAGTTTCTCCAAAAATATTA+AGG + chr1_1:17379457-17379476 Msa0011510:CDS 20.0%
!!! TTGAACTACCTTAATATTTT+TGG - chr1_1:17379468-17379487 None:intergenic 20.0%
!! ATAGTTCAAAACATTTAGAA+AGG - chr1_1:17379494-17379513 None:intergenic 20.0%
!! CAAACTTATTATATGTCTTA+TGG + chr1_1:17379535-17379554 Msa0011510:intron 20.0%
!! GCAAGTTAAAAAAATTCTAT+AGG + chr1_1:17379599-17379618 Msa0011510:intron 20.0%
!! TTTGATCTGTTAAAAAATGA+AGG + chr1_1:17379627-17379646 Msa0011510:intron 20.0%
!! TTGATCTGTTAAAAAATGAA+GGG + chr1_1:17379628-17379647 Msa0011510:intron 20.0%
!!! TTGATTTGTAAAACTGTTTT+TGG + chr1_1:17379681-17379700 Msa0011510:intron 20.0%
!! AAATTGTATAATATACCACA+AGG + chr1_1:17379879-17379898 Msa0011510:intron 20.0%
!! AGATCAATAAATTAAGAAAG+GGG - chr1_1:17379955-17379974 None:intergenic 20.0%
!! GAGATCAATAAATTAAGAAA+GGG - chr1_1:17379956-17379975 None:intergenic 20.0%
!! TGAGATCAATAAATTAAGAA+AGG - chr1_1:17379957-17379976 None:intergenic 20.0%
!! GGAAAATACACAAAAATATA+AGG - chr1_1:17380065-17380084 None:intergenic 20.0%
!!! ATATTTCAATCATAAGTTGA+AGG + chr1_1:17380139-17380158 Msa0011510:CDS 20.0%
!!! TTTTTTTGGGTTGTTAAAAA+TGG - chr1_1:17380240-17380259 None:intergenic 20.0%
!! TTTAACAACCCAAAAAAATA+TGG + chr1_1:17380242-17380261 Msa0011510:CDS 20.0%
!!! TTGACTTACCATATTTTTTT+GGG - chr1_1:17380253-17380272 None:intergenic 20.0%
!!! TTTGACTTACCATATTTTTT+TGG - chr1_1:17380254-17380273 None:intergenic 20.0%
!! TATAATTATAGCAATAGTGT+TGG + chr1_1:17380434-17380453 Msa0011510:CDS 20.0%
!!! TAAAGCTCAATATATTTTGA+TGG - chr1_1:17380648-17380667 None:intergenic 20.0%
!! CTTATGCAAAAGATATTATT+GGG - chr1_1:17380756-17380775 None:intergenic 20.0%
!! TCTTATGCAAAAGATATTAT+TGG - chr1_1:17380757-17380776 None:intergenic 20.0%
!!! TTTTTTCAATATTCTCTTTG+GGG - chr1_1:17381396-17381415 None:intergenic 20.0%
!!! ATATTTTATGGATTACTCAA+AGG - chr1_1:17381915-17381934 None:intergenic 20.0%
!!! AAAAAAAAAACTTTTACAGG+GGG - chr1_1:17382306-17382325 None:intergenic 20.0%
!!! GGAAAAAAAAAAACTTTTAC+AGG - chr1_1:17382309-17382328 None:intergenic 20.0%
!!! CAAAAATTTTGGTTTTTGTA+TGG - chr1_1:17382351-17382370 None:intergenic 20.0%
!!! TCTGAAGAAATTTTTTTTAC+AGG + chr1_1:17382417-17382436 Msa0011510:intron 20.0%
!!! AAGAAATTTTTTTTACAGGA+GGG + chr1_1:17382421-17382440 Msa0011510:intron 20.0%
!! ATGTCTCTTAAAAACAAATT+GGG - chr1_1:17382721-17382740 None:intergenic 20.0%
!! AATGTCTCTTAAAAACAAAT+TGG - chr1_1:17382722-17382741 None:intergenic 20.0%
!!! TTTCTATTGGTTAAAAACAA+TGG + chr1_1:17383045-17383064 Msa0011510:intron 20.0%
!! AATTCTTTGTAGCAAATATT+GGG - chr1_1:17383338-17383357 None:intergenic 20.0%
!! ATGTTCATACAAAATGAAAT+AGG - chr1_1:17383535-17383554 None:intergenic 20.0%
!!! TTAATTCTTTTTTGAGGAAA+CGG - chr1_1:17383710-17383729 None:intergenic 20.0%
!! ATTAGAGAATTCAAATTGTA+TGG + chr1_1:17383780-17383799 Msa0011510:intron 20.0%
!! TTAGAGAATTCAAATTGTAT+GGG + chr1_1:17383781-17383800 Msa0011510:intron 20.0%
!!! TGTGATTTTTAAGAAAATAG+GGG - chr1_1:17383917-17383936 None:intergenic 20.0%
!!! GTGTGATTTTTAAGAAAATA+GGG - chr1_1:17383918-17383937 None:intergenic 20.0%
!!! TGTGTGATTTTTAAGAAAAT+AGG - chr1_1:17383919-17383938 None:intergenic 20.0%
!! TTGGACAATAAAAAAATGTT+TGG + chr1_1:17383997-17384016 Msa0011510:intron 20.0%
!! AAAAATTACTAGACTTAATG+TGG - chr1_1:17384199-17384218 None:intergenic 20.0%
!!! AGTCTAGTAATTTTTTTCAA+AGG + chr1_1:17384204-17384223 Msa0011510:intron 20.0%
!!! TTTTTGCTTATATTTTGAGA+CGG - chr1_1:17384247-17384266 None:intergenic 20.0%
!! TAATGTTGATCTTTCATAAA+TGG + chr1_1:17384620-17384639 Msa0011510:intron 20.0%
!! CTATTATGATTATTATTAGG+CGG - chr1_1:17384910-17384929 None:intergenic 20.0%
!! CACCTATTATGATTATTATT+AGG - chr1_1:17384913-17384932 None:intergenic 20.0%
!! GAGATAAATTCTGATATTTA+GGG - chr1_1:17385457-17385476 None:intergenic 20.0%
!! AGAGATAAATTCTGATATTT+AGG - chr1_1:17385458-17385477 None:intergenic 20.0%
!! GAACATTTCATATGAATTTA+CGG - chr1_1:17385495-17385514 None:intergenic 20.0%
!! TATGAAATGTTCATTTCATT+TGG + chr1_1:17385503-17385522 Msa0011510:intron 20.0%
!! CTATATAGTGTTTATGTAAA+TGG - chr1_1:17385554-17385573 None:intergenic 20.0%
!!! GGTGATTATGATTTTAATTA+AGG + chr1_1:17385950-17385969 Msa0011510:intron 20.0%
!! TTGGAATAATAATCTTCTTT+GGG - chr1_1:17386049-17386068 None:intergenic 20.0%
!!! TTTGGAATAATAATCTTCTT+TGG - chr1_1:17386050-17386069 None:intergenic 20.0%
!!! GAATTTTATAGAGAATATCA+AGG + chr1_1:17386171-17386190 Msa0011510:CDS 20.0%
!! TAGATAAAGTTAGCAAAAAA+GGG - chr1_1:17386207-17386226 None:intergenic 20.0%
!! ATTAATAAAATGCAACTTAC+TGG + chr1_1:17386330-17386349 Msa0011510:intron 20.0%
!! CTAGAATATATACAAATTAG+GGG + chr1_1:17386357-17386376 Msa0011510:intron 20.0%
!! TTCCAAAATCCAAAAAAATA+CGG + chr1_1:17386604-17386623 Msa0011510:CDS 20.0%
!!! ATCGATCATATTTTTTAGTT+AGG + chr1_1:17386640-17386659 Msa0011510:intron 20.0%
!!! TCGATCATATTTTTTAGTTA+GGG + chr1_1:17386641-17386660 Msa0011510:intron 20.0%
!!! TTTTTTAGTTAGGGTATATT+TGG + chr1_1:17386650-17386669 Msa0011510:intron 20.0%
!! AAAATAATTGTGTTAAATCG+TGG + chr1_1:17387042-17387061 Msa0011510:three_prime_UTR 20.0%
!!! ATCAAGTGTATCATTTTTTG+TGG + chr1_1:17377562-17377581 Msa0011510:CDS 25.0%
!!! GAAATTTTCAGGAGTTTAAT+TGG + chr1_1:17377886-17377905 Msa0011510:intron 25.0%
! ACCAAAGATTCAATACATAA+GGG - chr1_1:17378015-17378034 None:intergenic 25.0%
! TACCAAAGATTCAATACATA+AGG - chr1_1:17378016-17378035 None:intergenic 25.0%
! AAAAACTTGAAACAAACAAC+TGG + chr1_1:17378382-17378401 Msa0011510:intron 25.0%
! ATAGTTATACATACACGTTT+AGG - chr1_1:17378488-17378507 None:intergenic 25.0%
! TTGTGAATAATTGAAGGTTT+AGG - chr1_1:17378695-17378714 None:intergenic 25.0%
! CAAAAAATCAGACATTAAAC+CGG + chr1_1:17378712-17378731 Msa0011510:intron 25.0%
! ATTTGACTATAGTTTCATAG+TGG - chr1_1:17378764-17378783 None:intergenic 25.0%
! AATATCTGAATTGAGTGTAT+TGG - chr1_1:17379171-17379190 None:intergenic 25.0%
!!! CAATCACTAATTTTTTAGGT+TGG - chr1_1:17379580-17379599 None:intergenic 25.0%
!!! CTTGCAATCACTAATTTTTT+AGG - chr1_1:17379584-17379603 None:intergenic 25.0%
! CAGAACAAAAATTTCGTTTA+AGG + chr1_1:17379729-17379748 Msa0011510:intron 25.0%
! ATACCCAATACAAAATAAGT+GGG - chr1_1:17379839-17379858 None:intergenic 25.0%
! TATACCCAATACAAAATAAG+TGG - chr1_1:17379840-17379859 None:intergenic 25.0%
!!! ATTTAAGACCCACTTTTTTA+GGG - chr1_1:17379925-17379944 None:intergenic 25.0%
!!! AATTTAAGACCCACTTTTTT+AGG - chr1_1:17379926-17379945 None:intergenic 25.0%
! ATTCAGGACATATACAATTT+GGG + chr1_1:17379993-17380012 Msa0011510:intron 25.0%
! AATACACAAAAATATAAGGG+AGG - chr1_1:17380061-17380080 None:intergenic 25.0%
! TGAATTATTCATTGATATGC+AGG + chr1_1:17380368-17380387 Msa0011510:intron 25.0%
!! AATGGTACTCAAATTTTTGT+AGG + chr1_1:17380479-17380498 Msa0011510:CDS 25.0%
!! ATTTTCCATGAAATTTCTAC+TGG + chr1_1:17380572-17380591 Msa0011510:intron 25.0%
!!! ATATTTTGATGGAATTTCTG+TGG - chr1_1:17380637-17380656 None:intergenic 25.0%
!! AATAAAGTGTTCTTCTACAT+TGG + chr1_1:17380699-17380718 Msa0011510:intron 25.0%
!! ATAAAGTGTTCTTCTACATT+GGG + chr1_1:17380700-17380719 Msa0011510:intron 25.0%
! GATATTATTGGGTATGAAAT+TGG - chr1_1:17380745-17380764 None:intergenic 25.0%
!!! ATATTTTAACATAAGAGGGA+AGG + chr1_1:17380791-17380810 Msa0011510:intron 25.0%
!!! CATAATTCAAGCTTTTTTGT+AGG + chr1_1:17380818-17380837 Msa0011510:intron 25.0%
! AATGACTACACTCTATATAA+GGG - chr1_1:17381002-17381021 None:intergenic 25.0%
!! AAAAAGTGATCAATTTTCGT+CGG - chr1_1:17381372-17381391 None:intergenic 25.0%
! AAAAACAAGAAGAGAAATAG+AGG + chr1_1:17381415-17381434 Msa0011510:intron 25.0%
! AAAACAAGAAGAGAAATAGA+GGG + chr1_1:17381416-17381435 Msa0011510:intron 25.0%
! AGGTATTTATAGGTAGAAAT+GGG + chr1_1:17381495-17381514 Msa0011510:intron 25.0%
! ATTTATGGTAGTTACAACAT+AGG - chr1_1:17381523-17381542 None:intergenic 25.0%
! TGTTGTAACTACCATAAATA+TGG + chr1_1:17381524-17381543 Msa0011510:intron 25.0%
!!! TAAAGTTTGTTAAAAACGTG+TGG + chr1_1:17381561-17381580 Msa0011510:intron 25.0%
!!! CTATTTTAATCAATTCGACA+AGG + chr1_1:17382201-17382220 Msa0011510:intron 25.0%
!!! GAAGAAATTTTTTTTACAGG+AGG + chr1_1:17382420-17382439 Msa0011510:intron 25.0%
!!! CTGTAATATAGGTCATTTTT+GGG - chr1_1:17382479-17382498 None:intergenic 25.0%
! CAAAAATGACCTATATTACA+GGG + chr1_1:17382478-17382497 Msa0011510:intron 25.0%
! AAAAATGACCTATATTACAG+GGG + chr1_1:17382479-17382498 Msa0011510:intron 25.0%
! CACTACTCTTAATAATATAC+CGG - chr1_1:17382973-17382992 None:intergenic 25.0%
! GTCATTATAGTTGTCAAAAA+TGG - chr1_1:17383008-17383027 None:intergenic 25.0%
!! TTCTTTTTCTCTCTTTCTAT+TGG + chr1_1:17383032-17383051 Msa0011510:intron 25.0%
! GATAATTCCATTAATTCCAT+AGG + chr1_1:17383215-17383234 Msa0011510:intron 25.0%
! AAATGAACCTATGGAATTAA+TGG - chr1_1:17383225-17383244 None:intergenic 25.0%
! ATTCTTTGTAGCAAATATTG+GGG - chr1_1:17383337-17383356 None:intergenic 25.0%
! CAATTCTTTGTAGCAAATAT+TGG - chr1_1:17383339-17383358 None:intergenic 25.0%
!! TTTCCTGCAATATTTAACTT+TGG + chr1_1:17383363-17383382 Msa0011510:CDS 25.0%
!!! ACTTTTTTCAATAGATCAAC+TGG + chr1_1:17383453-17383472 Msa0011510:CDS 25.0%
! CTATGAAATCAAGAATGATT+CGG - chr1_1:17383494-17383513 None:intergenic 25.0%
! CATTTCCTCAAAAAACAAAA+AGG + chr1_1:17384024-17384043 Msa0011510:intron 25.0%
!! ACGAATTTTTCCTTGTATTT+TGG + chr1_1:17384328-17384347 Msa0011510:intron 25.0%
!! CGAATTTTTCCTTGTATTTT+GGG + chr1_1:17384329-17384348 Msa0011510:intron 25.0%
!! GTTTTGTCGTATAAATATGA+GGG - chr1_1:17384378-17384397 None:intergenic 25.0%
!! TGTTTTGTCGTATAAATATG+AGG - chr1_1:17384379-17384398 None:intergenic 25.0%
!! TTAGAGAACTTAAGTTGTAT+GGG - chr1_1:17384471-17384490 None:intergenic 25.0%
!! ATTAGAGAACTTAAGTTGTA+TGG - chr1_1:17384472-17384491 None:intergenic 25.0%
! AGAAACATATTTCTCTCATT+AGG - chr1_1:17384541-17384560 None:intergenic 25.0%
!!! TGGTTTTTTTTTTTTTGTGG+TGG + chr1_1:17384640-17384659 Msa0011510:intron 25.0%
! GACAATGCATAATATATACA+AGG - chr1_1:17384685-17384704 None:intergenic 25.0%
! CGCCTAATAATAATCATAAT+AGG + chr1_1:17384908-17384927 Msa0011510:intron 25.0%
! ATAAATTCTGATATTTAGGG+TGG - chr1_1:17385454-17385473 None:intergenic 25.0%
!!! TATGTAAATGGGTTTGTTAT+TGG - chr1_1:17385542-17385561 None:intergenic 25.0%
! TTTGTGCTGAAGAAAAAAAA+TGG - chr1_1:17385674-17385693 None:intergenic 25.0%
! TTGATTGTACTGAATTTGAA+GGG - chr1_1:17385835-17385854 None:intergenic 25.0%
! ATTGATTGTACTGAATTTGA+AGG - chr1_1:17385836-17385855 None:intergenic 25.0%
!! TCTCTAATGAATTTTGCTTT+TGG - chr1_1:17385873-17385892 None:intergenic 25.0%
!! AATTTCAAAATTTTCTTGCC+AGG + chr1_1:17386001-17386020 Msa0011510:intron 25.0%
! TGGAATAATAATCTTCTTTG+GGG - chr1_1:17386048-17386067 None:intergenic 25.0%
! ACCAATATCAAATGTGTATA+AGG - chr1_1:17386074-17386093 None:intergenic 25.0%
! GTAGATAAAGTTAGCAAAAA+AGG - chr1_1:17386208-17386227 None:intergenic 25.0%
! GGAGAAATCATAAACATAAA+TGG + chr1_1:17386826-17386845 Msa0011510:CDS 25.0%
! AACCATCTACTAGAATAATA+TGG + chr1_1:17386878-17386897 Msa0011510:CDS 25.0%
! ACCATCTACTAGAATAATAT+GGG + chr1_1:17386879-17386898 Msa0011510:CDS 25.0%
CAATGAAATCGACAATTAGA+CGG - chr1_1:17377769-17377788 None:intergenic 30.0%
! ATGTACATGATTGAGCTTTT+AGG + chr1_1:17377820-17377839 Msa0011510:intron 30.0%
TTCTACTTCTACATGTTAGA+AGG + chr1_1:17377859-17377878 Msa0011510:intron 30.0%
!!! TTTTGGCTTAATTGCACTTT+TGG + chr1_1:17377930-17377949 Msa0011510:intron 30.0%
!! TCGTAACTTTTGGAAAGATA+GGG - chr1_1:17377957-17377976 None:intergenic 30.0%
!! ATCGTAACTTTTGGAAAGAT+AGG - chr1_1:17377958-17377977 None:intergenic 30.0%
! CTTTCCAAAAGTTACGATTT+TGG + chr1_1:17377960-17377979 Msa0011510:intron 30.0%
CCAAAGATTCAATACATAAG+GGG - chr1_1:17378014-17378033 None:intergenic 30.0%
!!! TGCCACGTGTAAATTTTTTA+TGG + chr1_1:17378104-17378123 Msa0011510:intron 30.0%
!!! GCCACGTGTAAATTTTTTAT+GGG + chr1_1:17378105-17378124 Msa0011510:intron 30.0%
ACCCATAAAAAATTTACACG+TGG - chr1_1:17378109-17378128 None:intergenic 30.0%
!! TTACCATTACCAATTTTGAC+TGG - chr1_1:17378148-17378167 None:intergenic 30.0%
GACATGTGAATTTCATTGAT+GGG + chr1_1:17378642-17378661 Msa0011510:intron 30.0%
CATAATTCAATCAGTTGAAC+CGG + chr1_1:17378818-17378837 Msa0011510:intron 30.0%
GTTGCAAGAGACATATAATT+CGG - chr1_1:17378920-17378939 None:intergenic 30.0%
! GTAATTTCAGCTCAAAGTTT+TGG + chr1_1:17379004-17379023 Msa0011510:intron 30.0%
TGTCTAATGAATTGTGTTCT+AGG - chr1_1:17379199-17379218 None:intergenic 30.0%
ACACAATTCATTAGACAACA+AGG + chr1_1:17379202-17379221 Msa0011510:CDS 30.0%
GGTCCTTAATAATAAAGACA+TGG + chr1_1:17379274-17379293 Msa0011510:intron 30.0%
AAAGACATGGTTTACTTTGT+AGG + chr1_1:17379287-17379306 Msa0011510:intron 30.0%
TTAGAGAAATACTCTTCCTT+GGG - chr1_1:17379335-17379354 None:intergenic 30.0%
GCTTTGTACACATTTGATAT+TGG + chr1_1:17379356-17379375 Msa0011510:CDS 30.0%
GATATTGGTCAAAATGATCT+TGG + chr1_1:17379371-17379390 Msa0011510:CDS 30.0%
! GAGAAACTATTGATTATCTC+TGG - chr1_1:17379446-17379465 None:intergenic 30.0%
AATACAAAATAAGTGGGTGT+AGG - chr1_1:17379833-17379852 None:intergenic 30.0%
!!! TACACCCACTTATTTTGTAT+TGG + chr1_1:17379832-17379851 Msa0011510:intron 30.0%
!!! ACACCCACTTATTTTGTATT+GGG + chr1_1:17379833-17379852 Msa0011510:intron 30.0%
ATATAGTAAGTTACACCTTG+TGG - chr1_1:17379897-17379916 None:intergenic 30.0%
!!! TTTAAGACCCACTTTTTTAG+GGG - chr1_1:17379924-17379943 None:intergenic 30.0%
TTGATCTCATTTGATGAACT+TGG + chr1_1:17379968-17379987 Msa0011510:intron 30.0%
GATTCAGGACATATACAATT+TGG + chr1_1:17379992-17380011 Msa0011510:intron 30.0%
! GTATTTTCCATTAGCTGAAA+AGG + chr1_1:17380076-17380095 Msa0011510:intron 30.0%
! TTTTCATCCTTTTCAGCTAA+TGG - chr1_1:17380086-17380105 None:intergenic 30.0%
TTAGCTGAAAAGGATGAAAA+TGG + chr1_1:17380086-17380105 Msa0011510:intron 30.0%
! GAAATTGGCATTGAAATCAT+AGG - chr1_1:17380730-17380749 None:intergenic 30.0%
CAATGACTACACTCTATATA+AGG - chr1_1:17381003-17381022 None:intergenic 30.0%
CGTTACAATTTACAATGATG+AGG + chr1_1:17381025-17381044 Msa0011510:intron 30.0%
ACAGATTTAAATTTAGCCCA+AGG + chr1_1:17381302-17381321 Msa0011510:intron 30.0%
CAGATTTAAATTTAGCCCAA+GGG + chr1_1:17381303-17381322 Msa0011510:intron 30.0%
AAAATACATCATCAACCCTT+GGG - chr1_1:17381321-17381340 None:intergenic 30.0%
! AAAAGTGATCAATTTTCGTC+GGG - chr1_1:17381371-17381390 None:intergenic 30.0%
!! AAGTATGGAGAGGTATTTAT+AGG + chr1_1:17381485-17381504 Msa0011510:intron 30.0%
! GAGGTATTTATAGGTAGAAA+TGG + chr1_1:17381494-17381513 Msa0011510:intron 30.0%
TAATGGTCCAATGATGAATT+TGG + chr1_1:17381854-17381873 Msa0011510:intron 30.0%
TAAACAGCCAAATTCATCAT+TGG - chr1_1:17381864-17381883 None:intergenic 30.0%
TGATGAATTTGGCTGTTTAA+TGG + chr1_1:17381865-17381884 Msa0011510:intron 30.0%
GATGAATTTGGCTGTTTAAT+GGG + chr1_1:17381866-17381885 Msa0011510:intron 30.0%
TCGAGTAAAATGATATTGAG+CGG - chr1_1:17381974-17381993 None:intergenic 30.0%
TCAATTCGACAAGGTTTAAT+AGG + chr1_1:17382210-17382229 Msa0011510:intron 30.0%
! AGGTTTAATAGGTGATGTTT+TGG + chr1_1:17382221-17382240 Msa0011510:intron 30.0%
TATTACGATGATACTATTCC+AGG + chr1_1:17382248-17382267 Msa0011510:intron 30.0%
!!! TCGTTTTTTTATGGCCTATT+AGG + chr1_1:17382388-17382407 Msa0011510:intron 30.0%
!!! CGTTTTTTTATGGCCTATTA+GGG + chr1_1:17382389-17382408 Msa0011510:intron 30.0%
!!! GTTTTTTTATGGCCTATTAG+GGG + chr1_1:17382390-17382409 Msa0011510:intron 30.0%
!!! TTTTTTTATGGCCTATTAGG+GGG + chr1_1:17382391-17382410 Msa0011510:intron 30.0%
!! CCTGTAATATAGGTCATTTT+TGG - chr1_1:17382480-17382499 None:intergenic 30.0%
CCAAAAATGACCTATATTAC+AGG + chr1_1:17382477-17382496 Msa0011510:intron 30.0%
AAAATGACCTATATTACAGG+GGG + chr1_1:17382480-17382499 Msa0011510:intron 30.0%
!! TTAGCATTGAGATACACTTT+TGG + chr1_1:17382635-17382654 Msa0011510:intron 30.0%
!! TGTTTTTAAGAGACATTTGC+AGG + chr1_1:17382725-17382744 Msa0011510:intron 30.0%
GTGCTTCATCAATAATTTCA+TGG + chr1_1:17383245-17383264 Msa0011510:intron 30.0%
TTCTTTGTAGCAAATATTGG+GGG - chr1_1:17383336-17383355 None:intergenic 30.0%
TTGAAAAAAGTCTCTCCATT+TGG - chr1_1:17383444-17383463 None:intergenic 30.0%
CGAATCATTCTTGATTTCAT+AGG + chr1_1:17383492-17383511 Msa0011510:CDS 30.0%
!! TGTTCATCACTTTTGAAAAG+TGG + chr1_1:17383572-17383591 Msa0011510:intron 30.0%
CATTCAAACAACTATTTGTG+TGG + chr1_1:17383645-17383664 Msa0011510:intron 30.0%
GATAAAATATGATCATGTGC+TGG - chr1_1:17383815-17383834 None:intergenic 30.0%
!! TTTTAAGAAAATAGGGGTGA+GGG - chr1_1:17383911-17383930 None:intergenic 30.0%
!! TTTTTAAGAAAATAGGGGTG+AGG - chr1_1:17383912-17383931 None:intergenic 30.0%
!! AGTCATCATTTCTTTTTCGT+TGG + chr1_1:17383978-17383997 Msa0011510:intron 30.0%
!!! CCAAACCTTTTTGTTTTTTG+AGG - chr1_1:17384032-17384051 None:intergenic 30.0%
CCTCAAAAAACAAAAAGGTT+TGG + chr1_1:17384029-17384048 Msa0011510:intron 30.0%
!! GTTTGATGATGTATCTTCTA+CGG - chr1_1:17384090-17384109 None:intergenic 30.0%
! CTAGTATTCGTGTATTGATA+AGG - chr1_1:17384121-17384140 None:intergenic 30.0%
GTGGTTTAACTAAAAAACGA+TGG - chr1_1:17384180-17384199 None:intergenic 30.0%
!! TTTTTCCTTGTATTTTGGGA+CGG + chr1_1:17384333-17384352 Msa0011510:intron 30.0%
ATACTCTTATAGTAGATGCA+CGG - chr1_1:17384582-17384601 None:intergenic 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+TGG + chr1_1:17384644-17384663 Msa0011510:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG + chr1_1:17384645-17384664 Msa0011510:intron 30.0%
CATAATATATACAAGGTCCA+GGG - chr1_1:17384678-17384697 None:intergenic 30.0%
TTACACCATTTATGAAAGAG+TGG - chr1_1:17384733-17384752 None:intergenic 30.0%
TTAAGATATGGACTTAGGTA+GGG - chr1_1:17385708-17385727 None:intergenic 30.0%
ATTAAGATATGGACTTAGGT+AGG - chr1_1:17385709-17385728 None:intergenic 30.0%
GAGAATTAAGATATGGACTT+AGG - chr1_1:17385713-17385732 None:intergenic 30.0%
AGTCCATATCTTAATTCTCT+AGG + chr1_1:17385714-17385733 Msa0011510:CDS 30.0%
GATCCTAGAGAATTAAGATA+TGG - chr1_1:17385720-17385739 None:intergenic 30.0%
CCATTGGGTATAATACTATT+AGG - chr1_1:17385795-17385814 None:intergenic 30.0%
CCTAATAGTATTATACCCAA+TGG + chr1_1:17385792-17385811 Msa0011510:CDS 30.0%
!! AATGGACTAAACATTCCATT+GGG - chr1_1:17385810-17385829 None:intergenic 30.0%
!! AAATGGACTAAACATTCCAT+TGG - chr1_1:17385811-17385830 None:intergenic 30.0%
TACTGAATTTGAAGGGAAAA+TGG - chr1_1:17385828-17385847 None:intergenic 30.0%
GCAAAATTCATTAGAGATCA+AGG + chr1_1:17385876-17385895 Msa0011510:CDS 30.0%
TTGTTCTCACTGAAATCTTT+CGG + chr1_1:17385929-17385948 Msa0011510:intron 30.0%
ATCAAATGTGTATAAGGCTT+TGG - chr1_1:17386068-17386087 None:intergenic 30.0%
GCCTTATACACATTTGATAT+TGG + chr1_1:17386070-17386089 Msa0011510:CDS 30.0%
GGAAAATTGGCCAAAATTAA+AGG - chr1_1:17386427-17386446 None:intergenic 30.0%
CTTTATAGCAGATGGAAAAT+TGG - chr1_1:17386440-17386459 None:intergenic 30.0%
! CAATTTTCCATCTGCTATAA+AGG + chr1_1:17386438-17386457 Msa0011510:CDS 30.0%
!!! TTTTGGAAAAGAGAGTACTT+AGG - chr1_1:17386592-17386611 None:intergenic 30.0%
!!! CACCGTATTTTTTTGGATTT+TGG - chr1_1:17386609-17386628 None:intergenic 30.0%
!!! TTTGTCTCACCGTATTTTTT+TGG - chr1_1:17386616-17386635 None:intergenic 30.0%
TAGTTAGGGTATATTTGGAT+TGG + chr1_1:17386655-17386674 Msa0011510:intron 30.0%
AGTTAGGGTATATTTGGATT+GGG + chr1_1:17386656-17386675 Msa0011510:intron 30.0%
AAATGGTACAAACATTGTTG+TGG + chr1_1:17386843-17386862 Msa0011510:CDS 30.0%
AATGGTACAAACATTGTTGT+GGG + chr1_1:17386844-17386863 Msa0011510:CDS 30.0%
TCCCATATTATTCTAGTAGA+TGG - chr1_1:17386883-17386902 None:intergenic 30.0%
TCTACTAGAATAATATGGGA+TGG + chr1_1:17386883-17386902 Msa0011510:CDS 30.0%
!! ATTGCTACTTTCAATCACTG+TGG - chr1_1:17377606-17377625 None:intergenic 35.0%
AAATAAGTCTCTCCATATGG+TGG - chr1_1:17377716-17377735 None:intergenic 35.0%
TGGAAATAAGTCTCTCCATA+TGG - chr1_1:17377719-17377738 None:intergenic 35.0%
ACTTATTTCCACAGACCTAA+TGG + chr1_1:17377728-17377747 Msa0011510:CDS 35.0%
CTTATTTCCACAGACCTAAT+GGG + chr1_1:17377729-17377748 Msa0011510:CDS 35.0%
!! CGTCTAATTGTCGATTTCAT+TGG + chr1_1:17377767-17377786 Msa0011510:CDS 35.0%
ACTTCTACATGTTAGAAGGT+TGG + chr1_1:17377863-17377882 Msa0011510:intron 35.0%
CTTCTACATGTTAGAAGGTT+GGG + chr1_1:17377864-17377883 Msa0011510:intron 35.0%
! TAGAAGGTTGGGAAATTTTC+AGG + chr1_1:17377875-17377894 Msa0011510:intron 35.0%
!! CGTAACTTTTGGAAAGATAG+GGG - chr1_1:17377956-17377975 None:intergenic 35.0%
CCCCTTATGTATTGAATCTT+TGG + chr1_1:17378011-17378030 Msa0011510:intron 35.0%
AGACCAGTCAAAATTGGTAA+TGG + chr1_1:17378142-17378161 Msa0011510:intron 35.0%
!! AGTTAGTCCAGTTGATAAGA+AGG + chr1_1:17378576-17378595 Msa0011510:intron 35.0%
GTTGAACTCAAACATTTACG+AGG - chr1_1:17378612-17378631 None:intergenic 35.0%
CGACATGTGAATTTCATTGA+TGG + chr1_1:17378641-17378660 Msa0011510:intron 35.0%
! GTTAATTTGGTACTGCCAAA+AGG - chr1_1:17378890-17378909 None:intergenic 35.0%
ATTCGGACCAAGAGTTAATT+TGG - chr1_1:17378903-17378922 None:intergenic 35.0%
CAAGATATGCGCTTAGATAA+GGG - chr1_1:17379033-17379052 None:intergenic 35.0%
TCAAGATATGCGCTTAGATA+AGG - chr1_1:17379034-17379053 None:intergenic 35.0%
AAGCGCATATCTTGATTCTT+TGG + chr1_1:17379039-17379058 Msa0011510:CDS 35.0%
AGCGCATATCTTGATTCTTT+GGG + chr1_1:17379040-17379059 Msa0011510:CDS 35.0%
GTTTGCACCATGTGAAAAAT+TGG - chr1_1:17379068-17379087 None:intergenic 35.0%
TATTGGACATCAAGGTAGAA+AGG - chr1_1:17379154-17379173 None:intergenic 35.0%
ATTGAGTGTATTGGACATCA+AGG - chr1_1:17379162-17379181 None:intergenic 35.0%
CTTAGAGAAATACTCTTCCT+TGG - chr1_1:17379336-17379355 None:intergenic 35.0%
!! CAAGGAAGAGTATTTCTCTA+AGG + chr1_1:17379334-17379353 Msa0011510:CDS 35.0%
!!! GTTTTTGGAACATGACAATC+TGG + chr1_1:17379696-17379715 Msa0011510:intron 35.0%
CAGCATAAGACAAACTTGTA+TGG - chr1_1:17379772-17379791 None:intergenic 35.0%
ATATACACCCCCTAAAAAAG+TGG + chr1_1:17379913-17379932 Msa0011510:intron 35.0%
TATACACCCCCTAAAAAAGT+GGG + chr1_1:17379914-17379933 Msa0011510:intron 35.0%
!!! TTAAGACCCACTTTTTTAGG+GGG - chr1_1:17379923-17379942 None:intergenic 35.0%
! TTTGATGAACTTGGTGATTC+AGG + chr1_1:17379977-17379996 Msa0011510:intron 35.0%
! ATTTGGGTGCTAGATCATTT+TGG + chr1_1:17380009-17380028 Msa0011510:intron 35.0%
! TCATTTTGGATACACAACAC+AGG + chr1_1:17380023-17380042 Msa0011510:intron 35.0%
ACATATGTGATTGCAGCTAA+AGG - chr1_1:17380194-17380213 None:intergenic 35.0%
ATAGCCACAACAAACAACTA+GGG - chr1_1:17380405-17380424 None:intergenic 35.0%
! TATAGCAATAGTGTTGGATG+TGG + chr1_1:17380440-17380459 Msa0011510:CDS 35.0%
AAGCTCCAGTAGAAATTTCA+TGG - chr1_1:17380580-17380599 None:intergenic 35.0%
!!! AAGCTTTTTTGTAGGACAGA+TGG + chr1_1:17380826-17380845 Msa0011510:intron 35.0%
CAGGTCGGATCATATATATA+GGG - chr1_1:17380861-17380880 None:intergenic 35.0%
TCAGGTCGGATCATATATAT+AGG - chr1_1:17380862-17380881 None:intergenic 35.0%
CAAAATACCAACTTCAGCAT+TGG - chr1_1:17380965-17380984 None:intergenic 35.0%
CAATTTACAATGATGAGGAG+CGG + chr1_1:17381030-17381049 Msa0011510:intron 35.0%
! CAAGAAGTTCTTTTTACCCA+CGG - chr1_1:17381270-17381289 None:intergenic 35.0%
TGGGTAAAAAGAACTTCTTG+TGG + chr1_1:17381270-17381289 Msa0011510:intron 35.0%
GAAAATACATCATCAACCCT+TGG - chr1_1:17381322-17381341 None:intergenic 35.0%
! ATGATGTATTTTCCCCAAGA+AGG + chr1_1:17381329-17381348 Msa0011510:intron 35.0%
AAATAGTGAGTAGCCTTCTT+GGG - chr1_1:17381345-17381364 None:intergenic 35.0%
AAAATAGTGAGTAGCCTTCT+TGG - chr1_1:17381346-17381365 None:intergenic 35.0%
! AAAGTGATCAATTTTCGTCG+GGG - chr1_1:17381370-17381389 None:intergenic 35.0%
! GTTAAAAACGTGTGGATTGA+AGG + chr1_1:17381569-17381588 Msa0011510:intron 35.0%
! AACTAACGCAAGGGTATATT+TGG + chr1_1:17381750-17381769 Msa0011510:intron 35.0%
! TATTTTACAGGGAGTAAACC+TGG - chr1_1:17382458-17382477 None:intergenic 35.0%
! TTTTTGTATGGCCTATTAGG+GGG - chr1_1:17382339-17382358 None:intergenic 35.0%
! GTTTTTGTATGGCCTATTAG+GGG - chr1_1:17382340-17382359 None:intergenic 35.0%
! GGTTTTTGTATGGCCTATTA+GGG - chr1_1:17382341-17382360 None:intergenic 35.0%
! TGGTTTTTGTATGGCCTATT+AGG - chr1_1:17382342-17382361 None:intergenic 35.0%
! TGTTTTACCCCCTGTAATAT+AGG - chr1_1:17382490-17382509 None:intergenic 35.0%
ACAAATTGGGACATTCATTG+TGG - chr1_1:17382708-17382727 None:intergenic 35.0%
AATACAATCCCCAGAAAGAA+AGG + chr1_1:17382768-17382787 Msa0011510:intron 35.0%
! ATAGCCTTTCTTGTTTGACT+GGG - chr1_1:17382915-17382934 None:intergenic 35.0%
! AATAGCCTTTCTTGTTTGAC+TGG - chr1_1:17382916-17382935 None:intergenic 35.0%
TCTACTTTGATATCTCGATC+CGG + chr1_1:17382951-17382970 Msa0011510:intron 35.0%
ATGAAGCACAAATGAACCTA+TGG - chr1_1:17383234-17383253 None:intergenic 35.0%
TGGCACAAATAGAGTTTCTT+AGG + chr1_1:17383265-17383284 Msa0011510:intron 35.0%
GCACCAAAGTTAAATATTGC+AGG - chr1_1:17383369-17383388 None:intergenic 35.0%
! TCAACTGGAAGATTTTCTGA+TGG + chr1_1:17383468-17383487 Msa0011510:CDS 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG + chr1_1:17384646-17384665 Msa0011510:intron 35.0%
GCATAATATATACAAGGTCC+AGG - chr1_1:17384679-17384698 None:intergenic 35.0%
! CTGCTGATATCTTTGTGTTT+TGG - chr1_1:17384936-17384955 None:intergenic 35.0%
CAAAACACAAAGATATCAGC+AGG + chr1_1:17384934-17384953 Msa0011510:intron 35.0%
!! GGTTTGTTATTGGCATTCTT+TGG - chr1_1:17385532-17385551 None:intergenic 35.0%
ACACTATATAGAAGCTCACA+TGG + chr1_1:17385563-17385582 Msa0011510:intron 35.0%
ACACTATATAGAAGCTCACA+TGG + chr1_1:17385563-17385582 Msa0011510:intron 35.0%
! TTTTCTTCAGCACAAAGCTT+TGG + chr1_1:17385678-17385697 Msa0011510:intron 35.0%
! TTCAAAATTTTCTTGCCAGG+AGG + chr1_1:17386004-17386023 Msa0011510:intron 35.0%
!!! GATCTTACTGCTGGTTTTTT+TGG + chr1_1:17386100-17386119 Msa0011510:CDS 35.0%
ATATATACAAATTAGGGGCC+AGG + chr1_1:17386362-17386381 Msa0011510:CDS 35.0%
! TCATTTTGGATACACAACAC+TGG + chr1_1:17380023-17380042 Msa0011510:intron 35.0%
! ATTAAAGGCACACATCCAAT+TGG - chr1_1:17386412-17386431 None:intergenic 35.0%
!! TGGATGTGTGCCTTTAATTT+TGG + chr1_1:17386414-17386433 Msa0011510:CDS 35.0%
TATAACATTCGTGCTAGATG+TGG + chr1_1:17386805-17386824 Msa0011510:CDS 35.0%
GTCTTTGATCAAATCTCTAC+TGG + chr1_1:17386937-17386956 Msa0011510:CDS 35.0%
TTGTAACATGCCCTATTTAG+TGG - chr1_1:17386985-17387004 None:intergenic 35.0%
TTCCCTGCAATCTTCAACTT+TGG + chr1_1:17377638-17377657 Msa0011510:CDS 40.0%
CACCAAAGTTGAAGATTGCA+GGG - chr1_1:17377643-17377662 None:intergenic 40.0%
TCACCAAAGTTGAAGATTGC+AGG - chr1_1:17377644-17377663 None:intergenic 40.0%
! GGGACCAAAATCGTAACTTT+TGG - chr1_1:17377967-17377986 None:intergenic 40.0%
!! ACCAAGTCAAAATTGGCCTT+GGG - chr1_1:17378048-17378067 None:intergenic 40.0%
AGCGAAGACCAAGTCAAAAT+TGG - chr1_1:17378055-17378074 None:intergenic 40.0%
TGAGTCACCTTCTTATCAAC+TGG - chr1_1:17378586-17378605 None:intergenic 40.0%
GGCAGTACCAAATTAACTCT+TGG + chr1_1:17378893-17378912 Msa0011510:intron 40.0%
GCGCATATCTTGATTCTTTG+GGG + chr1_1:17379041-17379060 Msa0011510:CDS 40.0%
! TTGGGGACCAATTTTTCACA+TGG + chr1_1:17379058-17379077 Msa0011510:CDS 40.0%
TGAGGTATAATACTAGGTGG+GGG - chr1_1:17379118-17379137 None:intergenic 40.0%
CTGAGGTATAATACTAGGTG+GGG - chr1_1:17379119-17379138 None:intergenic 40.0%
CCTGAGGTATAATACTAGGT+GGG - chr1_1:17379120-17379139 None:intergenic 40.0%
CCACCTAGTATTATACCTCA+GGG + chr1_1:17379118-17379137 Msa0011510:CDS 40.0%
GACATGGTTTACTTTGTAGG+AGG + chr1_1:17379290-17379309 Msa0011510:intron 40.0%
ACATGACAATCTGGAGACAA+TGG + chr1_1:17379705-17379724 Msa0011510:intron 40.0%
TAGCCACAACAAACAACTAG+GGG - chr1_1:17380404-17380423 None:intergenic 40.0%
CATAGCCACAACAAACAACT+AGG - chr1_1:17380406-17380425 None:intergenic 40.0%
!! CTAGTTGTTTGTTGTGGCTA+TGG + chr1_1:17380404-17380423 Msa0011510:CDS 40.0%
TTGAGTACCATTGACCTCTA+TGG - chr1_1:17380471-17380490 None:intergenic 40.0%
ACCATCTGCAAGAGTGAATT+GGG + chr1_1:17380514-17380533 Msa0011510:CDS 40.0%
TCCATCCATTCCCTTGAATA+TGG + chr1_1:17380607-17380626 Msa0011510:intron 40.0%
AGTTGTTGTCCTTGTAAGGT+TGG + chr1_1:17380908-17380927 Msa0011510:intron 40.0%
CTCATTGTTCCAACCTTACA+AGG - chr1_1:17380920-17380939 None:intergenic 40.0%
TGTAAGGTTGGAACAATGAG+AGG + chr1_1:17380920-17380939 Msa0011510:intron 40.0%
AGCAAAATTCAAGGGAAAGC+TGG - chr1_1:17381095-17381114 None:intergenic 40.0%
AATGCGCATGTTAAGTAACG+TGG + chr1_1:17381196-17381215 Msa0011510:intron 40.0%
AATAGTGAGTAGCCTTCTTG+GGG - chr1_1:17381344-17381363 None:intergenic 40.0%
TGAGATGGTGTGAGGAATTA+GGG + chr1_1:17381462-17381481 Msa0011510:intron 40.0%
TGTGAGGAATTAGGGAAGTA+TGG + chr1_1:17381470-17381489 Msa0011510:intron 40.0%
! AGAACACACGTTTTTGTGGA+CGG - chr1_1:17381610-17381629 None:intergenic 40.0%
GTATATTTGGAAGCAGTGCA+GGG + chr1_1:17381763-17381782 Msa0011510:intron 40.0%
GCAAAATTCCTTTCCCTTTG+TGG + chr1_1:17381812-17381831 Msa0011510:intron 40.0%
TCATCATTGGACCATTACTG+CGG - chr1_1:17381851-17381870 None:intergenic 40.0%
AGATTCGTCAAGATGAACGA+TGG - chr1_1:17382114-17382133 None:intergenic 40.0%
TTCCAAAATACCCCCCTAAT+AGG + chr1_1:17382325-17382344 Msa0011510:intron 40.0%
! TTTTGTATGGCCTATTAGGG+GGG - chr1_1:17382338-17382357 None:intergenic 40.0%
TCTTCAGATTACCCCCTAAT+AGG - chr1_1:17382405-17382424 None:intergenic 40.0%
TGTGTTGTCCTTTCTTTCTG+GGG - chr1_1:17382779-17382798 None:intergenic 40.0%
CTGTGTTGTCCTTTCTTTCT+GGG - chr1_1:17382780-17382799 None:intergenic 40.0%
GATACCCAGTCAAACAAGAA+AGG + chr1_1:17382908-17382927 Msa0011510:intron 40.0%
AAATGCTGATACTGGTGGTT+TGG + chr1_1:17383392-17383411 Msa0011510:CDS 40.0%
GATCTCTTATCGTAGATGCA+TGG + chr1_1:17383667-17383686 Msa0011510:intron 40.0%
GTGCGTGCAACTATAATCTT+TGG + chr1_1:17384437-17384456 Msa0011510:intron 40.0%
TCTCTCATTAGGTAGATGCT+CGG - chr1_1:17384530-17384549 None:intergenic 40.0%
! TGAGCTTAGCTAAGTTGACA+TGG - chr1_1:17384707-17384726 None:intergenic 40.0%
CACGACCACTCTTTCATAAA+TGG + chr1_1:17384725-17384744 Msa0011510:intron 40.0%
CAGAATTTATCTCTCTCCGT+CGG + chr1_1:17385464-17385483 Msa0011510:intron 40.0%
TGAATTTACGGTATAGCCGA+CGG - chr1_1:17385483-17385502 None:intergenic 40.0%
CTAGGATCAAACTTCACACA+TGG + chr1_1:17385732-17385751 Msa0011510:CDS 40.0%
AATGTTGCAAATACACCTCC+TGG - chr1_1:17386022-17386041 None:intergenic 40.0%
GGTCAAAATGATCTTACTGC+TGG + chr1_1:17386091-17386110 Msa0011510:CDS 40.0%
GTTGTGTATCCAAAATGACC+TGG - chr1_1:17386383-17386402 None:intergenic 40.0%
ATACACAACACTGGACCAAT+TGG + chr1_1:17386394-17386413 Msa0011510:CDS 40.0%
TGGCTATCCTTTATAGCAGA+TGG - chr1_1:17386448-17386467 None:intergenic 40.0%
TCTGCTATAAAGGATAGCCA+AGG + chr1_1:17386448-17386467 Msa0011510:CDS 40.0%
TGTATTGCTTTGCACAACCT+TGG - chr1_1:17386468-17386487 None:intergenic 40.0%
ACATATGTGATTGCAGCTAG+TGG - chr1_1:17386556-17386575 None:intergenic 40.0%
ATCCTCCCATTCCACTAAAT+AGG + chr1_1:17386971-17386990 Msa0011510:CDS 40.0%
TCCTCCCATTCCACTAAATA+GGG + chr1_1:17386972-17386991 Msa0011510:CDS 40.0%
CATGCCCTATTTAGTGGAAT+GGG - chr1_1:17386979-17386998 None:intergenic 40.0%
ACATGCCCTATTTAGTGGAA+TGG - chr1_1:17386980-17386999 None:intergenic 40.0%
ATTTCCACAGACCTAATGGG+AGG + chr1_1:17377732-17377751 Msa0011510:CDS 45.0%
!!! TTTGGTAGTTTTAGCCCCCA+AGG + chr1_1:17378029-17378048 Msa0011510:intron 45.0%
!! CAAGTCAAAATTGGCCTTGG+GGG - chr1_1:17378046-17378065 None:intergenic 45.0%
!! CCAAGTCAAAATTGGCCTTG+GGG - chr1_1:17378047-17378066 None:intergenic 45.0%
! GACCAAGTCAAAATTGGCCT+TGG - chr1_1:17378049-17378068 None:intergenic 45.0%
GCACCTCACTTAAGTGATGT+GGG - chr1_1:17378087-17378106 None:intergenic 45.0%
CAGCGAAGACCAGTCAAAAT+TGG + chr1_1:17378136-17378155 Msa0011510:intron 45.0%
CAATTGAGTCATGATCTCGC+CGG - chr1_1:17378734-17378753 None:intergenic 45.0%
CCCACCTAGTATTATACCTC+AGG + chr1_1:17379117-17379136 Msa0011510:CDS 45.0%
CCCTGAGGTATAATACTAGG+TGG - chr1_1:17379121-17379140 None:intergenic 45.0%
CCACCCTGAGGTATAATACT+AGG - chr1_1:17379124-17379143 None:intergenic 45.0%
CCTAGTATTATACCTCAGGG+TGG + chr1_1:17379121-17379140 Msa0011510:CDS 45.0%
ATTTGCAAGCTTGATGCCCA+AGG + chr1_1:17379316-17379335 Msa0011510:CDS 45.0%
! GGTCAAAATGATCTTGGTGC+TGG + chr1_1:17379377-17379396 Msa0011510:CDS 45.0%
!!! GATCTTGGTGCTGGCTTTTT+TGG + chr1_1:17379386-17379405 Msa0011510:CDS 45.0%
ATACACAACACAGGACCCAT+TGG + chr1_1:17380032-17380051 Msa0011510:intron 45.0%
ATATAAGGGAGGCAGCCAAT+GGG - chr1_1:17380050-17380069 None:intergenic 45.0%
AATATAAGGGAGGCAGCCAA+TGG - chr1_1:17380051-17380070 None:intergenic 45.0%
! CATCCCCTAGTTGTTTGTTG+TGG + chr1_1:17380398-17380417 Msa0011510:CDS 45.0%
!! GTTGTTTGTTGTGGCTATGG+AGG + chr1_1:17380407-17380426 Msa0011510:CDS 45.0%
! AGCAATAGTGTTGGATGTGG+AGG + chr1_1:17380443-17380462 Msa0011510:CDS 45.0%
GACCATCTGCAAGAGTGAAT+TGG + chr1_1:17380513-17380532 Msa0011510:CDS 45.0%
TCCCAATTCACTCTTGCAGA+TGG - chr1_1:17380518-17380537 None:intergenic 45.0%
TCTGCAAGAGTGAATTGGGA+TGG + chr1_1:17380518-17380537 Msa0011510:CDS 45.0%
GCCATATTCAAGGGAATGGA+TGG - chr1_1:17380611-17380630 None:intergenic 45.0%
GCATGCCATATTCAAGGGAA+TGG - chr1_1:17380615-17380634 None:intergenic 45.0%
CTGTGGCATGCCATATTCAA+GGG - chr1_1:17380620-17380639 None:intergenic 45.0%
TCTGTGGCATGCCATATTCA+AGG - chr1_1:17380621-17380640 None:intergenic 45.0%
AGTTGTTCTGCTGATCAGGT+CGG - chr1_1:17380876-17380895 None:intergenic 45.0%
TGGAAGTTGTTCTGCTGATC+AGG - chr1_1:17380880-17380899 None:intergenic 45.0%
CAGCAGAACAACTTCCAATG+CGG + chr1_1:17380883-17380902 Msa0011510:intron 45.0%
GGTGAGTTGTTGTCCTTGTA+AGG + chr1_1:17380904-17380923 Msa0011510:intron 45.0%
AAGGTTGGAACAATGAGAGG+TGG + chr1_1:17380923-17380942 Msa0011510:intron 45.0%
AAGCACTCCAATGCTGAAGT+TGG + chr1_1:17380955-17380974 Msa0011510:intron 45.0%
GGGTGGAGAGCAAAATTCAA+GGG - chr1_1:17381103-17381122 None:intergenic 45.0%
TGGGTGGAGAGCAAAATTCA+AGG - chr1_1:17381104-17381123 None:intergenic 45.0%
! ACCGCAGAAACTTTTTACCG+TGG + chr1_1:17381250-17381269 Msa0011510:intron 45.0%
CCCACGGTAAAAAGTTTCTG+CGG - chr1_1:17381254-17381273 None:intergenic 45.0%
! CCGCAGAAACTTTTTACCGT+GGG + chr1_1:17381251-17381270 Msa0011510:intron 45.0%
AGAAATAGAGGGAGAGAGTG+AGG + chr1_1:17381427-17381446 Msa0011510:intron 45.0%
GTGAGATGGTGTGAGGAATT+AGG + chr1_1:17381461-17381480 Msa0011510:intron 45.0%
! GGAATTAGGGAAGTATGGAG+AGG + chr1_1:17381475-17381494 Msa0011510:intron 45.0%
! CGCAAGAACACACGTTTTTG+TGG - chr1_1:17381614-17381633 None:intergenic 45.0%
TGCGTTAGTTAAGTCACGCA+TGG + chr1_1:17381689-17381708 Msa0011510:intron 45.0%
TGCGTGACTTAACTAACGCA+AGG + chr1_1:17381740-17381759 Msa0011510:intron 45.0%
GCGTGACTTAACTAACGCAA+GGG + chr1_1:17381741-17381760 Msa0011510:intron 45.0%
GGTATATTTGGAAGCAGTGC+AGG + chr1_1:17381762-17381781 Msa0011510:intron 45.0%
! TTTGGCTGTTTAATGGGCCT+TGG + chr1_1:17381872-17381891 Msa0011510:intron 45.0%
CCTGTGTTGTCCTTTCTTTC+TGG - chr1_1:17382781-17382800 None:intergenic 45.0%
CCAGAAAGAAAGGACAACAC+AGG + chr1_1:17382778-17382797 Msa0011510:intron 45.0%
GGTGCTTCAAATGCTGATAC+TGG + chr1_1:17383384-17383403 Msa0011510:CDS 45.0%
GCTTCAAATGCTGATACTGG+TGG + chr1_1:17383387-17383406 Msa0011510:CDS 45.0%
! TGGCAACTGAAGTGCTTGAA+AGG - chr1_1:17383424-17383443 None:intergenic 45.0%
CAAGCACTTCAGTTGCCAAA+TGG + chr1_1:17383426-17383445 Msa0011510:CDS 45.0%
!! TTTTGAGGAAACGGTCTCCA+TGG - chr1_1:17383701-17383720 None:intergenic 45.0%
!!! TCCTTGTATTTTGGGACGGA+TGG + chr1_1:17384337-17384356 Msa0011510:intron 45.0%
TCCATCCGTCCCAAAATACA+AGG - chr1_1:17384341-17384360 None:intergenic 45.0%
GTGCAAACTTTGCAACAGCA+GGG + chr1_1:17385754-17385773 Msa0011510:CDS 45.0%
! AATTAGGGGCCAGGTCATTT+TGG + chr1_1:17386371-17386390 Msa0011510:CDS 45.0%
ATCCACACGAAGTTGAGCTA+GGG - chr1_1:17386530-17386549 None:intergenic 45.0%
AGGATTTGAGCTACCACATG+TGG + chr1_1:17386753-17386772 Msa0011510:intron 45.0%
GGATGGTACACATTACACAG+AGG + chr1_1:17386900-17386919 Msa0011510:CDS 45.0%
!! TAATTATAATTCTAAATAAA+AGG + chr1_1:17378958-17378977 Msa0011510:intron 5.0%
!!! ATTAAAAAAAATATTTTACA+GGG - chr1_1:17382280-17382299 None:intergenic 5.0%
!!! AATTAAAAAAAATATTTTAC+AGG - chr1_1:17382281-17382300 None:intergenic 5.0%
!!! ATTTTTTTTTACAAAAATTT+TGG - chr1_1:17382362-17382381 None:intergenic 5.0%
!!! ATTTTGTATTTTTTTTTTTT+TGG + chr1_1:17385224-17385243 Msa0011510:intron 5.0%
!! TTTATTAATATATATAACAA+GGG - chr1_1:17386319-17386338 None:intergenic 5.0%
!!! TTTTATTAATATATATAACA+AGG - chr1_1:17386320-17386339 None:intergenic 5.0%
GGTGACTCAAACTCAGACAC+TGG + chr1_1:17377659-17377678 Msa0011510:CDS 50.0%
GACTCAAACTCAGACACTGG+TGG + chr1_1:17377662-17377681 Msa0011510:CDS 50.0%
AAACTCAGACACTGGTGGCT+TGG + chr1_1:17377667-17377686 Msa0011510:CDS 50.0%
AGAACCTCCCATTAGGTCTG+TGG - chr1_1:17377739-17377758 None:intergenic 50.0%
CCATCAGAGAACCTCCCATT+AGG - chr1_1:17377746-17377765 None:intergenic 50.0%
CCTAATGGGAGGTTCTCTGA+TGG + chr1_1:17377743-17377762 Msa0011510:CDS 50.0%
!!! CCCCAAGGCCAATTTTGACT+TGG + chr1_1:17378044-17378063 Msa0011510:intron 50.0%
GCACCCACATCACTTAAGTG+AGG + chr1_1:17378081-17378100 Msa0011510:intron 50.0%
GGCACCTCACTTAAGTGATG+TGG - chr1_1:17378088-17378107 None:intergenic 50.0%
AAAGGACTGTATCCACCCTG+AGG - chr1_1:17379136-17379155 None:intergenic 50.0%
TGGATGTGGAGGAACCATAG+AGG + chr1_1:17380454-17380473 Msa0011510:CDS 50.0%
GGAGGAACCATAGAGGTCAA+TGG + chr1_1:17380461-17380480 Msa0011510:CDS 50.0%
AGGACAACAACTCACCGCAT+TGG - chr1_1:17380900-17380919 None:intergenic 50.0%
! TTCAGCATTGGAGTGCTTGC+AGG - chr1_1:17380953-17380972 None:intergenic 50.0%
GAGGAGCGGTTATAGTCTGT+TGG + chr1_1:17381044-17381063 Msa0011510:intron 50.0%
CTGGCAGCAATATGGAGCAA+TGG - chr1_1:17381076-17381095 None:intergenic 50.0%
AGGGAAAGCTGGCAGCAATA+TGG - chr1_1:17381084-17381103 None:intergenic 50.0%
!!! AACTAGCGCAGGGGCATTTT+GGG - chr1_1:17381156-17381175 None:intergenic 50.0%
!!! TAACTAGCGCAGGGGCATTT+TGG - chr1_1:17381157-17381176 None:intergenic 50.0%
TGCGCAAGTTAACTAGCGCA+GGG - chr1_1:17381166-17381185 None:intergenic 50.0%
TTGCGCAAGTTAACTAGCGC+AGG - chr1_1:17381167-17381186 None:intergenic 50.0%
AATAGAGGGAGAGAGTGAGG+AGG + chr1_1:17381430-17381449 Msa0011510:intron 50.0%
ATAGAGGGAGAGAGTGAGGA+GGG + chr1_1:17381431-17381450 Msa0011510:intron 50.0%
GGAGAAAGTGAGATGGTGTG+AGG + chr1_1:17381454-17381473 Msa0011510:intron 50.0%
! ACACACGTTTTTGTGGACGG+TGG - chr1_1:17381607-17381626 None:intergenic 50.0%
TCTTGCGTTAACTCGCGCAT+AGG + chr1_1:17381627-17381646 Msa0011510:intron 50.0%
TGACTTAAGTCACGCACCAC+TGG - chr1_1:17381653-17381672 None:intergenic 50.0%
TGCGTGACTTAAGTCACGCA+TGG + chr1_1:17381657-17381676 Msa0011510:intron 50.0%
TCCTTTCCCTTTGTGGAGAG+TGG + chr1_1:17381819-17381838 Msa0011510:intron 50.0%
CCTTTCCCTTTGTGGAGAGT+GGG + chr1_1:17381820-17381839 Msa0011510:intron 50.0%
CATATGCTTGCAGCAGTCCA+AGG - chr1_1:17381892-17381911 None:intergenic 50.0%
!!! GGCCTATTAGGGGGGTATTT+TGG - chr1_1:17382330-17382349 None:intergenic 50.0%
GATGCATGGTGCAACAACCA+TGG + chr1_1:17383681-17383700 Msa0011510:intron 50.0%
!! GATGCTCGGTGCAACAATTG+TGG - chr1_1:17384516-17384535 None:intergenic 50.0%
GATGCACGGTGCAACAATTG+TGG - chr1_1:17384568-17384587 None:intergenic 50.0%
GGTGCAAACTTTGCAACAGC+AGG + chr1_1:17385753-17385772 Msa0011510:CDS 50.0%
GATCCACACGAAGTTGAGCT+AGG - chr1_1:17386531-17386550 None:intergenic 50.0%
CTACCACATGTGGCATGTTG+TGG + chr1_1:17386763-17386782 Msa0011510:CDS 50.0%
TAGCCACAACATGCCACATG+TGG - chr1_1:17386769-17386788 None:intergenic 50.0%
CATGTGGCATGTTGTGGCTA+TGG + chr1_1:17386769-17386788 Msa0011510:CDS 50.0%
GCCCTATTTAGTGGAATGGG+AGG - chr1_1:17386976-17386995 None:intergenic 50.0%
CAAGCACCAACGCCACCATA+TGG + chr1_1:17377701-17377720 Msa0011510:CDS 55.0%
! GTCTCTCCATATGGTGGCGT+TGG - chr1_1:17377710-17377729 None:intergenic 55.0%
!! TGACTTGGTCTTCGCTGACG+TGG + chr1_1:17378059-17378078 Msa0011510:intron 55.0%
!! TTGACTGGTCTTCGCTGACG+TGG - chr1_1:17378133-17378152 None:intergenic 55.0%
TGCGAGCAAAATGTGCTGGG+TGG - chr1_1:17381120-17381139 None:intergenic 55.0%
GGGTGCGAGCAAAATGTGCT+GGG - chr1_1:17381123-17381142 None:intergenic 55.0%
AGGGTGCGAGCAAAATGTGC+TGG - chr1_1:17381124-17381143 None:intergenic 55.0%
! GCATTTTGGGCATGGCTGCA+GGG - chr1_1:17381143-17381162 None:intergenic 55.0%
GCGCAAGTTAACTAGCGCAG+GGG - chr1_1:17381165-17381184 None:intergenic 55.0%
GGCGCAAGTTAAGTGACGCA+TGG + chr1_1:17381217-17381236 Msa0011510:intron 55.0%
TAGAGGGAGAGAGTGAGGAG+GGG + chr1_1:17381432-17381451 Msa0011510:intron 55.0%
AGGAGGGGGAGAAAGTGAGA+TGG + chr1_1:17381447-17381466 Msa0011510:intron 55.0%
TTAACTCGCGCATAGGCCAG+TGG + chr1_1:17381634-17381653 Msa0011510:intron 55.0%
CCCACTCTCCACAAAGGGAA+AGG - chr1_1:17381823-17381842 None:intergenic 55.0%
TCACGCCCACTCTCCACAAA+GGG - chr1_1:17381828-17381847 None:intergenic 55.0%
AGCCCTAGCTCAACTTCGTG+TGG + chr1_1:17386525-17386544 Msa0011510:CDS 55.0%
GTGGCATGTTGTGGCTATGG+AGG + chr1_1:17386772-17386791 Msa0011510:CDS 55.0%
! GGCATTTTGGGCATGGCTGC+AGG - chr1_1:17381144-17381163 None:intergenic 60.0%
AGAGGGAGAGAGTGAGGAGG+GGG + chr1_1:17381433-17381452 Msa0011510:intron 60.0%
AGGGCGCGAGCAAAATGTGC+TGG + chr1_1:17381782-17381801 Msa0011510:intron 60.0%
GGGCGCGAGCAAAATGTGCT+GGG + chr1_1:17381783-17381802 Msa0011510:intron 60.0%
CGCGAGCAAAATGTGCTGGG+TGG + chr1_1:17381786-17381805 Msa0011510:intron 60.0%
GTCACGCCCACTCTCCACAA+AGG - chr1_1:17381829-17381848 None:intergenic 60.0%
AGTGGGCGTGACCGCAGTAA+TGG + chr1_1:17381837-17381856 Msa0011510:intron 60.0%
!!! GCGCAGGGGCATTTTGGGCA+TGG - chr1_1:17381151-17381170 None:intergenic 65.0%
GGTGGCTGGGGTTTGAACCC+TGG + chr1_1:17384658-17384677 Msa0011510:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 17377551 17387115 17377551 ID=Msa0011510;Name=Msa0011510
chr1_1 mRNA 17377551 17387115 17377551 ID=Msa0011510-mRNA-1;Parent=Msa0011510;Name=Msa0011510-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.6|0.36|1|0.7|0.63|11|104|686
chr1_1 exon 17377551 17377788 17377551 ID=Msa0011510-mRNA-1:exon:6319;Parent=Msa0011510-mRNA-1
chr1_1 exon 17379014 17379223 17379014 ID=Msa0011510-mRNA-1:exon:6320;Parent=Msa0011510-mRNA-1
chr1_1 exon 17379309 17379478 17379309 ID=Msa0011510-mRNA-1:exon:6321;Parent=Msa0011510-mRNA-1
chr1_1 exon 17380098 17380263 17380098 ID=Msa0011510-mRNA-1:exon:6322;Parent=Msa0011510-mRNA-1
chr1_1 exon 17380390 17380567 17380390 ID=Msa0011510-mRNA-1:exon:6323;Parent=Msa0011510-mRNA-1
chr1_1 exon 17383287 17383513 17383287 ID=Msa0011510-mRNA-1:exon:6324;Parent=Msa0011510-mRNA-1
chr1_1 exon 17385688 17385897 17385688 ID=Msa0011510-mRNA-1:exon:6325;Parent=Msa0011510-mRNA-1
chr1_1 exon 17386023 17386192 17386023 ID=Msa0011510-mRNA-1:exon:6326;Parent=Msa0011510-mRNA-1
chr1_1 exon 17386361 17386492 17386361 ID=Msa0011510-mRNA-1:exon:6327;Parent=Msa0011510-mRNA-1
chr1_1 exon 17386523 17386625 17386523 ID=Msa0011510-mRNA-1:exon:6328;Parent=Msa0011510-mRNA-1
chr1_1 exon 17386755 17387115 17386755 ID=Msa0011510-mRNA-1:exon:6329;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17377551 17377788 17377551 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17379014 17379223 17379014 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17379309 17379478 17379309 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17380098 17380263 17380098 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17380390 17380567 17380390 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17383287 17383513 17383287 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17385688 17385897 17385688 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17386023 17386192 17386023 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17386361 17386492 17386361 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17386523 17386625 17386523 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 CDS 17386755 17387011 17386755 ID=Msa0011510-mRNA-1:cds;Parent=Msa0011510-mRNA-1
chr1_1 three_prime_UTR 17387012 17387115 17387012 ID=Msa0011510-mRNA-1:three_prime_utr;Parent=Msa0011510-mRNA-1
Gene Sequence

>Msa0011510

ATGTTTCATATATCAAGTGTATCATTTTTTGTGGTGTTATCTATAGCTACTACCACAGTGATTGAAAGTAGCAATAGTGAGTGCAATTTCCCTGCAATCTTCAACTTTGGTGACTCAAACTCAGACACTGGTGGCTTGGCTGCTTCTCTTCAAGCACCAACGCCACCATATGGAGAGACTTATTTCCACAGACCTAATGGGAGGTTCTCTGATGGCCGTCTAATTGTCGATTTCATTGCTCAAAGTTTTGGACTCCCTTATCTAAGCGCATATCTTGATTCTTTGGGGACCAATTTTTCACATGGTGCAAACTTTGCAACATCAGCATCAACAATTAGACCCCCACCTAGTATTATACCTCAGGGTGGATACAGTCCTTTCTACCTTGATGTCCAATACACTCAATTCAGATATTTCAAACCTAGAACACAATTCATTAGACAACAAGGAGGATTATTTGCAAGCTTGATGCCCAAGGAAGAGTATTTCTCTAAGGCTTTGTACACATTTGATATTGGTCAAAATGATCTTGGTGCTGGCTTTTTTGGAAACATGATTATACAACAAGTAAATGCTTCTGTGCCAGAGATAATCAATAGTTTCTCCAAAAATATTAAGGATGAAAATGGTTGTGCAAAGCAATATAATGAAGTAGCACAATATTTCAATCATAAGTTGAAGGAAGCTGTCTTTAAACTTCGTGATGATCTTCCTTTAGCTGCAATCACATATGTAGATATCTACTCTGTTAAATATTCCATTTTTAACAACCCAAAAAAATATGGATTTGAGCATCCCCTAGTTGTTTGTTGTGGCTATGGAGGAGAGTATAATTATAGCAATAGTGTTGGATGTGGAGGAACCATAGAGGTCAATGGTACTCAAATTTTTGTAGGTTCATGTGAAAGACCATCTGCAAGAGTGAATTGGGATGGAATTCATTACACTGAAGCAGCTAGCAAGCACATGTCACTTGTGTATTTGATTGTGCTTATTTTATGTTCTACACCCCCAATATTTGCTACAAAGAATTGTGATTTTCCTGCAATATTTAACTTTGGTGCTTCAAATGCTGATACTGGTGGTTTGGCTGCTGCCTTTCAAGCACTTCAGTTGCCAAATGGAGAGACTTTTTTCAATAGATCAACTGGAAGATTTTCTGATGGCCGAATCATTCTTGATTTCATAGCACAAAGCTTTGGACTTCCCTACCTAAGTCCATATCTTAATTCTCTAGGATCAAACTTCACACATGGTGCAAACTTTGCAACAGCAGGGTCAACAATCAAAATTCCTAATAGTATTATACCCAATGGAATGTTTAGTCCATTTTCCCTTCAAATTCAGTACAATCAATTCAAAGATTTCATACCAAAAGCAAAATTCATTAGAGATCAAGGAGGTGTATTTGCAACATTGATCCCCAAAGAAGATTATTATTCCAAAGCCTTATACACATTTGATATTGGTCAAAATGATCTTACTGCTGGTTTTTTTGGTAATAAGACTATACAACAAGTCAACGCTACTGTGCCCGATATAGTAAAGAATTTTATAGAGAATATCAAGAATATATACAAATTAGGGGCCAGGTCATTTTGGATACACAACACTGGACCAATTGGATGTGTGCCTTTAATTTTGGCCAATTTTCCATCTGCTATAAAGGATAGCCAAGGTTGTGCAAAGCAATACAATGAAGAAGCCCTAGCTCAACTTCGTGTGGATCTTCCACTAGCTGCAATCACATATGTTGATATCTACTCTCCTAAGTACTCTCTTTTCCAAAATCCAAAAAAATACGGATTTGAGCTACCACATGTGGCATGTTGTGGCTATGGAGGAGAGAATAACTATAACATTCGTGCTAGATGTGGAGAAATCATAAACATAAATGGTACAAACATTGTTGTGGGTTCATGTAAAAAACCATCTACTAGAATAATATGGGATGGTACACATTACACAGAGGCAGCTAACAAGATTGTCTTTGATCAAATCTCTACTGGAGCTTTTACAGATCCTCCCATTCCACTAAATAGGGCATGTTACAAAAAGTGA
Protein sequence

>Msa0011510

MFHISSVSFFVVLSIATTTVIESSNSECNFPAIFNFGDSNSDTGGLAASLQAPTPPYGETYFHRPNGRFSDGRLIVDFIAQSFGLPYLSAYLDSLGTNFSHGANFATSASTIRPPPSIIPQGGYSPFYLDVQYTQFRYFKPRTQFIRQQGGLFASLMPKEEYFSKALYTFDIGQNDLGAGFFGNMIIQQVNASVPEIINSFSKNIKDENGCAKQYNEVAQYFNHKLKEAVFKLRDDLPLAAITYVDIYSVKYSIFNNPKKYGFEHPLVVCCGYGGEYNYSNSVGCGGTIEVNGTQIFVGSCERPSARVNWDGIHYTEAASKHMSLVYLIVLILCSTPPIFATKNCDFPAIFNFGASNADTGGLAAAFQALQLPNGETFFNRSTGRFSDGRIILDFIAQSFGLPYLSPYLNSLGSNFTHGANFATAGSTIKIPNSIIPNGMFSPFSLQIQYNQFKDFIPKAKFIRDQGGVFATLIPKEDYYSKALYTFDIGQNDLTAGFFGNKTIQQVNATVPDIVKNFIENIKNIYKLGARSFWIHNTGPIGCVPLILANFPSAIKDSQGCAKQYNEEALAQLRVDLPLAAITYVDIYSPKYSLFQNPKKYGFELPHVACCGYGGENNYNIRARCGEIININGTNIVVGSCKKPSTRIIWDGTHYTEAANKIVFDQISTGAFTDPPIPLNRACYKK*