AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005668.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005668.01.T01 AT1G61780 88.776 98 9 1 46 141 1 98 1.84e-60 181

Find 32 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATCTTGGATATTCAAAT+TGG 0.227939 1:+94744690 MsG0180005668.01.T01:CDS
GCACCTTCTTTCCATTTATC+TGG 0.231971 1:-94744909 None:intergenic
CAATTTGAATATCCAAGATT+TGG 0.257745 1:-94744689 None:intergenic
TGAAGGGAACCTGTTCTTCT+TGG 0.293706 1:-94744985 None:intergenic
AGGTGATAGTACCAGATAAA+TGG 0.304949 1:+94744898 MsG0180005668.01.T01:CDS
AATTAGCTGAAAAGGGGTAT+AGG 0.350950 1:+94744658 MsG0180005668.01.T01:CDS
ATTAGCTGAAAAGGGGTATA+GGG 0.371633 1:+94744659 MsG0180005668.01.T01:CDS
TTAGACTATATTATATATAA+AGG 0.375911 1:-94748161 None:intergenic
AACTCCTTTCCAAGAAGAAC+AGG 0.405714 1:+94744976 MsG0180005668.01.T01:CDS
ACGACACGAATTAGCTGAAA+AGG 0.416736 1:+94744650 MsG0180005668.01.T01:CDS
CCTTGTAGATGGACCCCTTA+CGG 0.465158 1:+94747858 MsG0180005668.01.T01:intron
GTTGCTTTGTTTATAAAACT+TGG 0.466176 1:-94748084 None:intergenic
CACACGTGTGCTTACTCAAA+AGG 0.468563 1:+94747936 MsG0180005668.01.T01:CDS
TGCACTTGGTTGTTCCGTAA+GGG 0.477894 1:-94747872 None:intergenic
ATGCACTTGGTTGTTCCGTA+AGG 0.478636 1:-94747873 None:intergenic
CTGCTTACAAATGATGCACT+TGG 0.484104 1:-94747886 None:intergenic
CGACACGAATTAGCTGAAAA+GGG 0.490307 1:+94744651 MsG0180005668.01.T01:CDS
ATAAACAAAGCAACGTGTAG+TGG 0.523993 1:+94748093 MsG0180005668.01.T01:CDS
TTGTAAGCAGCAAGTGCACC+AGG 0.524349 1:+94747899 MsG0180005668.01.T01:CDS
GTACCAGATAAATGGAAAGA+AGG 0.526643 1:+94744906 MsG0180005668.01.T01:CDS
GCACTTGGTTGTTCCGTAAG+GGG 0.542962 1:-94747871 None:intergenic
TGTGACAGTACTTGCCATCC+TGG 0.544753 1:-94747917 None:intergenic
GGAACCTGTTCTTCTTGGAA+AGG 0.545948 1:-94744980 None:intergenic
AGCAATACTACTGAGGGTGG+TGG 0.611332 1:+94744933 MsG0180005668.01.T01:CDS
GGTGCAAGCAATACTACTGA+GGG 0.634401 1:+94744927 MsG0180005668.01.T01:CDS
AAGCAGCAAGTGCACCAGGA+TGG 0.635149 1:+94747903 MsG0180005668.01.T01:CDS
AGAATCATTAGCGACTGCGA+TGG 0.640288 1:+94744752 MsG0180005668.01.T01:CDS
GCAGGAGTCTGTGCGATGTG+TGG 0.652505 1:+94748044 MsG0180005668.01.T01:intron
GCAAGCAATACTACTGAGGG+TGG 0.654071 1:+94744930 MsG0180005668.01.T01:CDS
GACACGAATTAGCTGAAAAG+GGG 0.659143 1:+94744652 MsG0180005668.01.T01:CDS
AGGTCAGAAGAAATTATCGA+AGG 0.666813 1:+94744878 MsG0180005668.01.T01:intron
AGGTGCAAGCAATACTACTG+AGG 0.668804 1:+94744926 MsG0180005668.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTTTTTTTTAATT+AGG + Chr1:94745021-94745040 MsG0180005668.01.T01:intron 0.0%
!!! ATTATTTTTTTTTTTAATTA+GGG + Chr1:94745022-94745041 MsG0180005668.01.T01:intron 0.0%
!! TATAATATTAATAATCTAAG+TGG - Chr1:94746798-94746817 None:intergenic 10.0%
!! TTAGACTATATTATATATAA+AGG - Chr1:94748164-94748183 None:intergenic 10.0%
!!! AAAAAGTAAATAAATTTTAG+GGG - Chr1:94746120-94746139 None:intergenic 10.0%
!!! AATAATTTTAGTTTTGATAT+TGG + Chr1:94745111-94745130 MsG0180005668.01.T01:intron 10.0%
!!! AATATATTTTTTGTATAGTA+TGG + Chr1:94747098-94747117 MsG0180005668.01.T01:intron 10.0%
!!! GAAAAAGTAAATAAATTTTA+GGG - Chr1:94746121-94746140 None:intergenic 10.0%
!!! TAAATTTTGAGTAATATTTA+AGG + Chr1:94747069-94747088 MsG0180005668.01.T01:intron 10.0%
!!! TGAAAAAGTAAATAAATTTT+AGG - Chr1:94746122-94746141 None:intergenic 10.0%
!! AAAAAGATAAGTAAAAAGAA+CGG - Chr1:94746838-94746857 None:intergenic 15.0%
!!! AAAAGTAAATAAATTTTAGG+GGG - Chr1:94746119-94746138 None:intergenic 15.0%
!!! GTAAATTCAATTGAATTTTT+TGG + Chr1:94744835-94744854 MsG0180005668.01.T01:intron 15.0%
!!! TTTTGAAAACAGTTATTTTT+TGG + Chr1:94745980-94745999 MsG0180005668.01.T01:intron 15.0%
!! AAAAAATAATTGAAGGGTTT+AGG - Chr1:94745012-94745031 None:intergenic 20.0%
!! AAAAAATAGAACAAAAAGAG+TGG - Chr1:94745536-94745555 None:intergenic 20.0%
!! AAAAGGAAAACATTTAGTAT+TGG - Chr1:94746681-94746700 None:intergenic 20.0%
!! AAAGGAAAACATTTAGTATT+GGG - Chr1:94746680-94746699 None:intergenic 20.0%
!! AAGCTATTGAACATTAAAAT+TGG + Chr1:94747304-94747323 MsG0180005668.01.T01:intron 20.0%
!! ATTTACAAAAGCTAGAAATA+TGG - Chr1:94744821-94744840 None:intergenic 20.0%
!! CTGTAAAAAGTTAATATTGT+GGG + Chr1:94748214-94748233 MsG0180005668.01.T01:three_prime_UTR 20.0%
!! TGAACATTTACAAAAAGTAA+TGG - Chr1:94747665-94747684 None:intergenic 20.0%
!!! AAAGTAAATAAATTTTAGGG+GGG - Chr1:94746118-94746137 None:intergenic 20.0%
!!! ATATTTGGTCTGTTTTTTTT+TGG + Chr1:94745719-94745738 MsG0180005668.01.T01:intron 20.0%
!!! ATATTTTTGATATATCTGAG+TGG + Chr1:94747367-94747386 MsG0180005668.01.T01:intron 20.0%
!!! CCAAAACTTTATTTTTTAAC+AGG + Chr1:94746143-94746162 MsG0180005668.01.T01:intron 20.0%
!!! CCTGTTAAAAAATAAAGTTT+TGG - Chr1:94746146-94746165 None:intergenic 20.0%
!!! TATTTTTCTTTTTGAAAGAC+AGG - Chr1:94746737-94746756 None:intergenic 20.0%
!!! TTATTTTTTAACAGGACATA+AGG + Chr1:94746151-94746170 MsG0180005668.01.T01:intron 20.0%
!!! TTTTATATGTAGACTTGATA+TGG + Chr1:94745788-94745807 MsG0180005668.01.T01:intron 20.0%
! AATAAAATGCAAGGGAAAAA+CGG - Chr1:94746029-94746048 None:intergenic 25.0%
! AATAATCTAAGTGGAAAGAA+AGG - Chr1:94746789-94746808 None:intergenic 25.0%
! ACAGATCAAAGTATAGTAAT+TGG - Chr1:94747743-94747762 None:intergenic 25.0%
! ATGGCATTAAATAAAATGCA+AGG - Chr1:94746038-94746057 None:intergenic 25.0%
! CAAATCTTGGATATTCAAAT+TGG + Chr1:94744690-94744709 MsG0180005668.01.T01:CDS 25.0%
! CAAATTACAAAAGGAGAAAA+GGG - Chr1:94747779-94747798 None:intergenic 25.0%
! CAATTTGAATATCCAAGATT+TGG - Chr1:94744692-94744711 None:intergenic 25.0%
! GCTGTAAAAAGTTAATATTG+TGG + Chr1:94748213-94748232 MsG0180005668.01.T01:three_prime_UTR 25.0%
! GTTCACATAACATAAAAACA+GGG - Chr1:94747809-94747828 None:intergenic 25.0%
! TAATTTGAATTCGATGTTGT+AGG + Chr1:94744858-94744877 MsG0180005668.01.T01:intron 25.0%
! TAGCTTATGATATTGTTCAT+AGG + Chr1:94745286-94745305 MsG0180005668.01.T01:intron 25.0%
! TATCGAAAAAACACTATTGT+TGG + Chr1:94748275-94748294 MsG0180005668.01.T01:three_prime_UTR 25.0%
! TCAAATTACAAAAGGAGAAA+AGG - Chr1:94747780-94747799 None:intergenic 25.0%
! TGGCATTAAATAAAATGCAA+GGG - Chr1:94746037-94746056 None:intergenic 25.0%
! TGTTCACATAACATAAAAAC+AGG - Chr1:94747810-94747829 None:intergenic 25.0%
! TTAAGATAGCTTATGAAAAC+AGG + Chr1:94745337-94745356 MsG0180005668.01.T01:intron 25.0%
! TTGAATTTATTCCTTGTAGA+TGG + Chr1:94747847-94747866 MsG0180005668.01.T01:intron 25.0%
!! ATGTTCAATAGCTTTCTTTT+TGG - Chr1:94747298-94747317 None:intergenic 25.0%
!! GAAAGAAACCTTATGTTTTT+AGG + Chr1:94745833-94745852 MsG0180005668.01.T01:intron 25.0%
!! TGGTATAACTTCAAATTTTG+AGG + Chr1:94745166-94745185 MsG0180005668.01.T01:intron 25.0%
!!! ACAATAGTGTTTTTTCGATA+AGG - Chr1:94748275-94748294 None:intergenic 25.0%
!!! AGAGTAAGGTGTTTTATAAA+AGG - Chr1:94746698-94746717 None:intergenic 25.0%
!!! ATAACTTCAAATTTTGAGGT+GGG + Chr1:94745170-94745189 MsG0180005668.01.T01:intron 25.0%
!!! ATAAGTTTTATGTGGTTGTT+CGG + Chr1:94745248-94745267 MsG0180005668.01.T01:intron 25.0%
!!! GTTGCTTTGTTTATAAAACT+TGG - Chr1:94748087-94748106 None:intergenic 25.0%
!!! GTTTTTTTGGTTGATTTTGT+GGG + Chr1:94746432-94746451 MsG0180005668.01.T01:intron 25.0%
!!! TATAACTTCAAATTTTGAGG+TGG + Chr1:94745169-94745188 MsG0180005668.01.T01:intron 25.0%
!!! TGTTTTTTTGGTTGATTTTG+TGG + Chr1:94746431-94746450 MsG0180005668.01.T01:intron 25.0%
AAAGTTGTGGAAACTTATCT+GGG + Chr1:94746639-94746658 MsG0180005668.01.T01:intron 30.0%
AACTACCACCTAAAAACATA+AGG - Chr1:94745844-94745863 None:intergenic 30.0%
AAGTGAGCATGATGAAATTA+TGG - Chr1:94746080-94746099 None:intergenic 30.0%
AATCAATTGTTGGATGTCAT+TGG + Chr1:94745913-94745932 MsG0180005668.01.T01:intron 30.0%
ACAAAAGCTAGAAATATGGA+TGG - Chr1:94744817-94744836 None:intergenic 30.0%
ACAATGTAACCAAAACAGTT+CGG - Chr1:94747402-94747421 None:intergenic 30.0%
AGACATATCATGATGAGATA+TGG - Chr1:94747438-94747457 None:intergenic 30.0%
AGTGAGCATGATGAAATTAT+GGG - Chr1:94746079-94746098 None:intergenic 30.0%
ATCAAACTAGGTTAAAGTTG+TGG + Chr1:94746626-94746645 MsG0180005668.01.T01:intron 30.0%
ATCAATTGTTGGATGTCATT+GGG + Chr1:94745914-94745933 MsG0180005668.01.T01:intron 30.0%
CCAATAGGATTTGATGTTTA+AGG + Chr1:94745685-94745704 MsG0180005668.01.T01:intron 30.0%
CCTTAAACATCAAATCCTAT+TGG - Chr1:94745688-94745707 None:intergenic 30.0%
GAAGATGAAATAAAGGACTT+TGG + Chr1:94746542-94746561 MsG0180005668.01.T01:intron 30.0%
GAGGAATGAAGATGAAATAA+AGG + Chr1:94746535-94746554 MsG0180005668.01.T01:intron 30.0%
GCGCTTATATTTAGTAATCA+CGG + Chr1:94747517-94747536 MsG0180005668.01.T01:intron 30.0%
GGTGTATTAGTAAAAGAGTA+AGG - Chr1:94746712-94746731 None:intergenic 30.0%
GGTGTGTATCAAATTACAAA+AGG - Chr1:94747788-94747807 None:intergenic 30.0%
TAAAGTTGTGGAAACTTATC+TGG + Chr1:94746638-94746657 MsG0180005668.01.T01:intron 30.0%
TATATGCTAGTGTTATGTTG+TGG - Chr1:94747252-94747271 None:intergenic 30.0%
TCAAAATTGTATCAACGTAC+AGG - Chr1:94745966-94745985 None:intergenic 30.0%
TCAATTATACGTAAGACTTG+TGG + Chr1:94747019-94747038 MsG0180005668.01.T01:intron 30.0%
TGAACAAGTGAATCAATTGT+TGG + Chr1:94745903-94745922 MsG0180005668.01.T01:intron 30.0%
TGGAATGGAAAATGTTAGTA+TGG - Chr1:94747278-94747297 None:intergenic 30.0%
! AATTTGAAGTTATACCAAGC+AGG - Chr1:94745163-94745182 None:intergenic 30.0%
! ACAACTTGTTTCCAGTTTAT+AGG - Chr1:94745460-94745479 None:intergenic 30.0%
! ACTTGATATGGTTAGTTGTA+TGG + Chr1:94745800-94745819 MsG0180005668.01.T01:intron 30.0%
! GTTTAGAATGAGTGATGTTA+TGG + Chr1:94747592-94747611 MsG0180005668.01.T01:intron 30.0%
! TCTCGTTTTATATGCGTTTT+TGG - Chr1:94746477-94746496 None:intergenic 30.0%
!! ACTTTGATCTGTTGTTTCAA+TGG + Chr1:94747751-94747770 MsG0180005668.01.T01:intron 30.0%
!! AGTTTTGATATTGGAAGCTT+TGG + Chr1:94745120-94745139 MsG0180005668.01.T01:intron 30.0%
!! CAATAGCTTTCTTTTTGGAA+TGG - Chr1:94747293-94747312 None:intergenic 30.0%
!! CTTTGATCTGTTGTTTCAAT+GGG + Chr1:94747752-94747771 MsG0180005668.01.T01:intron 30.0%
!! GTTTTGATATTGGAAGCTTT+GGG + Chr1:94745121-94745140 MsG0180005668.01.T01:intron 30.0%
!! TAAGTTTTATGTGGTTGTTC+GGG + Chr1:94745249-94745268 MsG0180005668.01.T01:intron 30.0%
!! TTTCTTTTTGAAAGACAGGT+GGG - Chr1:94746733-94746752 None:intergenic 30.0%
!! TTTTCTTTTTGAAAGACAGG+TGG - Chr1:94746734-94746753 None:intergenic 30.0%
!!! AGAAACCTTATGTTTTTAGG+TGG + Chr1:94745836-94745855 MsG0180005668.01.T01:intron 30.0%
!!! TAACTTCAAATTTTGAGGTG+GGG + Chr1:94745171-94745190 MsG0180005668.01.T01:intron 30.0%
AAGCTAGAAATATGGATGGA+TGG - Chr1:94744813-94744832 None:intergenic 35.0%
AAGGATGTGCTATGCATATT+TGG + Chr1:94745704-94745723 MsG0180005668.01.T01:intron 35.0%
AATATCTGTCCAAACTGTCA+AGG + Chr1:94747563-94747582 MsG0180005668.01.T01:intron 35.0%
AGGTCAGAAGAAATTATCGA+AGG + Chr1:94744878-94744897 MsG0180005668.01.T01:intron 35.0%
AGGTGATAGTACCAGATAAA+TGG + Chr1:94744898-94744917 MsG0180005668.01.T01:CDS 35.0%
ATAAACAAAGCAACGTGTAG+TGG + Chr1:94748093-94748112 MsG0180005668.01.T01:CDS 35.0%
ATAGAACAAAAAGAGTGGCA+TGG - Chr1:94745531-94745550 None:intergenic 35.0%
ATCAAATCCTATTGGTCCAT+GGG - Chr1:94745680-94745699 None:intergenic 35.0%
CACATGATTCTCAATACCAT+TGG + Chr1:94747705-94747724 MsG0180005668.01.T01:intron 35.0%
CCTGCAAATACAAAAAGATC+AGG - Chr1:94748029-94748048 None:intergenic 35.0%
GTACCAGATAAATGGAAAGA+AGG + Chr1:94744906-94744925 MsG0180005668.01.T01:CDS 35.0%
GTAGAAAGAGAAAGAGAGAA+AGG + Chr1:94746510-94746529 MsG0180005668.01.T01:intron 35.0%
TATGGATGGATGGAAGAAAA+AGG - Chr1:94744803-94744822 None:intergenic 35.0%
TTGGACAAAAAACTTGCCAA+TGG - Chr1:94747724-94747743 None:intergenic 35.0%
TTGTGCTATAGCCTATAAAC+TGG + Chr1:94745446-94745465 MsG0180005668.01.T01:intron 35.0%
! AATTAGCTGAAAAGGGGTAT+AGG + Chr1:94744658-94744677 MsG0180005668.01.T01:CDS 35.0%
! ATTAGCTGAAAAGGGGTATA+GGG + Chr1:94744659-94744678 MsG0180005668.01.T01:CDS 35.0%
! CCTGATCTTTTTGTATTTGC+AGG + Chr1:94748026-94748045 MsG0180005668.01.T01:intron 35.0%
! GCAATTTTCTTTTACCTGCT+TGG + Chr1:94745146-94745165 MsG0180005668.01.T01:intron 35.0%
! TGCATTTTGCATCTTCTTCT+AGG + Chr1:94748124-94748143 MsG0180005668.01.T01:three_prime_UTR 35.0%
! TTCAAACTTCCGAACTGTTT+TGG + Chr1:94747390-94747409 MsG0180005668.01.T01:intron 35.0%
!! AATTGAAGGGTTTAGGTTGA+AGG - Chr1:94745005-94745024 None:intergenic 35.0%
!! ATTGAAGGGTTTAGGTTGAA+GGG - Chr1:94745004-94745023 None:intergenic 35.0%
!! CTAGTGGCATAAGTTTTATG+TGG + Chr1:94745240-94745259 MsG0180005668.01.T01:intron 35.0%
!! TAAATTTTAGGGGGGTAACA+TGG - Chr1:94746110-94746129 None:intergenic 35.0%
!! TAGGGTTTTGATCCAAATCT+TGG + Chr1:94744677-94744696 MsG0180005668.01.T01:CDS 35.0%
!! TTTTGATTGATGTCGCTCTT+GGG + Chr1:94747342-94747361 MsG0180005668.01.T01:intron 35.0%
!! TTTTGGATTATTGGCCTGTT+TGG + Chr1:94745196-94745215 MsG0180005668.01.T01:intron 35.0%
!!! ATTTTGATTGATGTCGCTCT+TGG + Chr1:94747341-94747360 MsG0180005668.01.T01:intron 35.0%
!!! GTTTGTTCTCGTTGATTTTG+CGG - Chr1:94744959-94744978 None:intergenic 35.0%
AACCCAAAACCTTGACAGTT+TGG - Chr1:94747575-94747594 None:intergenic 40.0%
AACTCCTTTCCAAGAAGAAC+AGG + Chr1:94744976-94744995 MsG0180005668.01.T01:CDS 40.0%
AAGAAGAAGAAGAAGCTGTG+CGG + Chr1:94746601-94746620 MsG0180005668.01.T01:intron 40.0%
ACGACACGAATTAGCTGAAA+AGG + Chr1:94744650-94744669 MsG0180005668.01.T01:CDS 40.0%
ACTGTATCTCCCACAAAAGT+AGG + Chr1:94745618-94745637 MsG0180005668.01.T01:intron 40.0%
ACTTACCTGAGCTTATCTAG+TGG + Chr1:94745224-94745243 MsG0180005668.01.T01:intron 40.0%
AGAGAAAGAGAGAAAGGATG+AGG + Chr1:94746516-94746535 MsG0180005668.01.T01:intron 40.0%
AGTACATGACACTTGTAGGA+GGG + Chr1:94747634-94747653 MsG0180005668.01.T01:intron 40.0%
ATGGCAGATTTGAATCTGAC+AGG + Chr1:94745643-94745662 MsG0180005668.01.T01:intron 40.0%
CAGATCTGAAAGAAGAAGAC+TGG + Chr1:94746578-94746597 MsG0180005668.01.T01:intron 40.0%
CAGGTAAGTCAAATCCAAAC+AGG - Chr1:94745213-94745232 None:intergenic 40.0%
CATCAAATCCTATTGGTCCA+TGG - Chr1:94745681-94745700 None:intergenic 40.0%
CGACACGAATTAGCTGAAAA+GGG + Chr1:94744651-94744670 MsG0180005668.01.T01:CDS 40.0%
CGGCTATCAGTGTAATTCAA+TGG + Chr1:94747537-94747556 MsG0180005668.01.T01:intron 40.0%
CTGCTTACAAATGATGCACT+TGG - Chr1:94747889-94747908 None:intergenic 40.0%
GACACGAATTAGCTGAAAAG+GGG + Chr1:94744652-94744671 MsG0180005668.01.T01:CDS 40.0%
GCACCTTCTTTCCATTTATC+TGG - Chr1:94744912-94744931 None:intergenic 40.0%
TCAAATCCTATTGGTCCATG+GGG - Chr1:94745679-94745698 None:intergenic 40.0%
TCTCCCACAAAAGTAGGAAA+TGG + Chr1:94745624-94745643 MsG0180005668.01.T01:intron 40.0%
TGCTAGTGTTATGTTGTGGA+TGG - Chr1:94747248-94747267 None:intergenic 40.0%
TGGCAGATTTGAATCTGACA+GGG + Chr1:94745644-94745663 MsG0180005668.01.T01:intron 40.0%
TTATGCCACTAGATAAGCTC+AGG - Chr1:94745232-94745251 None:intergenic 40.0%
! AGGACATAAGGTTGACTTCA+TGG + Chr1:94746163-94746182 MsG0180005668.01.T01:intron 40.0%
! GTCCAAACTGTCAAGGTTTT+GGG + Chr1:94747570-94747589 MsG0180005668.01.T01:intron 40.0%
! TAAGGTTGACTTCATGGTTG+AGG + Chr1:94746169-94746188 MsG0180005668.01.T01:intron 40.0%
! TACAGTTGATTCAAGACACG+TGG - Chr1:94745604-94745623 None:intergenic 40.0%
! TGTCCAAACTGTCAAGGTTT+TGG + Chr1:94747569-94747588 MsG0180005668.01.T01:intron 40.0%
! TTAATGCCATTTACGTGCTG+TGG + Chr1:94746048-94746067 MsG0180005668.01.T01:intron 40.0%
!! CGTGAATTTTAGGCACTGTT+TGG - Chr1:94745487-94745506 None:intergenic 40.0%
!! CTGCCATTTCCTACTTTTGT+GGG - Chr1:94745630-94745649 None:intergenic 40.0%
!! TCTGCCATTTCCTACTTTTG+TGG - Chr1:94745631-94745650 None:intergenic 40.0%
!!! AATTTTGAGGTGGGGTGTTT+TGG + Chr1:94745179-94745198 MsG0180005668.01.T01:intron 40.0%
!!! TTTTTTGAGATGCGAGTTGC+AGG + Chr1:94746964-94746983 MsG0180005668.01.T01:intron 40.0%
ACAAGTGTCATGTACTGGAC+AGG - Chr1:94747630-94747649 None:intergenic 45.0%
AGAATCATTAGCGACTGCGA+TGG + Chr1:94744752-94744771 MsG0180005668.01.T01:CDS 45.0%
AGGTGCAAGCAATACTACTG+AGG + Chr1:94744926-94744945 MsG0180005668.01.T01:CDS 45.0%
ATGCACTTGGTTGTTCCGTA+AGG - Chr1:94747876-94747895 None:intergenic 45.0%
CACACGTGTGCTTACTCAAA+AGG + Chr1:94747936-94747955 MsG0180005668.01.T01:CDS 45.0%
CAGTACATGACACTTGTAGG+AGG + Chr1:94747633-94747652 MsG0180005668.01.T01:intron 45.0%
CTCCTACAAGTGTCATGTAC+TGG - Chr1:94747635-94747654 None:intergenic 45.0%
GAGAATCCACAGCACGTAAA+TGG - Chr1:94746057-94746076 None:intergenic 45.0%
GGAACCTGTTCTTCTTGGAA+AGG - Chr1:94744983-94745002 None:intergenic 45.0%
GGATGGCATAGTTGTCAAAG+CGG - Chr1:94747231-94747250 None:intergenic 45.0%
GGTGCAAGCAATACTACTGA+GGG + Chr1:94744927-94744946 MsG0180005668.01.T01:CDS 45.0%
GTCCAGTACATGACACTTGT+AGG + Chr1:94747630-94747649 MsG0180005668.01.T01:intron 45.0%
GTTTGACAACAGAGGTGGAT+GGG - Chr1:94746247-94746266 None:intergenic 45.0%
TAGTTGTCAAAGCGGAAACG+CGG - Chr1:94747223-94747242 None:intergenic 45.0%
TGAAGGGAACCTGTTCTTCT+TGG - Chr1:94744988-94745007 None:intergenic 45.0%
TGCACTTGGTTGTTCCGTAA+GGG - Chr1:94747875-94747894 None:intergenic 45.0%
TTAGGGGGGTAACATGGAAA+GGG - Chr1:94746104-94746123 None:intergenic 45.0%
TTTAGGGGGGTAACATGGAA+AGG - Chr1:94746105-94746124 None:intergenic 45.0%
TTTGACAACAGAGGTGGATG+GGG - Chr1:94746246-94746265 None:intergenic 45.0%
! GTTGACTTCATGGTTGAGGT+GGG + Chr1:94746173-94746192 MsG0180005668.01.T01:intron 45.0%
! TACCACGCAGCGTGAATTTT+AGG - Chr1:94745497-94745516 None:intergenic 45.0%
!! GGTGGGGTGTTTTGGATTAT+TGG + Chr1:94745187-94745206 MsG0180005668.01.T01:intron 45.0%
!!! TACGGGTCGGAGTGTTTTTT+TGG + Chr1:94746419-94746438 MsG0180005668.01.T01:intron 45.0%
!! TAAAAAAAAAAATAATTGAA+GGG - Chr1:94745018-94745037 None:intergenic 5.0%
!! TTAAAAAAAAAAATAATTGA+AGG - Chr1:94745019-94745038 None:intergenic 5.0%
ACTTCATGGTTGAGGTGGGA+GGG + Chr1:94746177-94746196 MsG0180005668.01.T01:intron 50.0%
AGCAATACTACTGAGGGTGG+TGG + Chr1:94744933-94744952 MsG0180005668.01.T01:CDS 50.0%
AGCTGTGCGGCTATCAAACT+AGG + Chr1:94746614-94746633 MsG0180005668.01.T01:intron 50.0%
CCTTGTAGATGGACCCCTTA+CGG + Chr1:94747858-94747877 MsG0180005668.01.T01:intron 50.0%
CGTTTGACAACAGAGGTGGA+TGG - Chr1:94746248-94746267 None:intergenic 50.0%
CTTCGCGCGTTTGTGAAAAG+CGG + Chr1:94746335-94746354 MsG0180005668.01.T01:intron 50.0%
GAAACTTATCTGGGCCCTAG+GGG + Chr1:94746648-94746667 MsG0180005668.01.T01:intron 50.0%
GATTCTCCCCATGGACCAAT+AGG + Chr1:94745670-94745689 MsG0180005668.01.T01:intron 50.0%
GCAAGCAATACTACTGAGGG+TGG + Chr1:94744930-94744949 MsG0180005668.01.T01:CDS 50.0%
GCACTTGGTTGTTCCGTAAG+GGG - Chr1:94747874-94747893 None:intergenic 50.0%
GGAAACTTATCTGGGCCCTA+GGG + Chr1:94746647-94746666 MsG0180005668.01.T01:intron 50.0%
TCCACCTCTGTTGTCAAACG+CGG + Chr1:94746248-94746267 MsG0180005668.01.T01:intron 50.0%
TGCCTAAAATTCACGCTGCG+TGG + Chr1:94745492-94745511 MsG0180005668.01.T01:intron 50.0%
TGGAAACTTATCTGGGCCCT+AGG + Chr1:94746646-94746665 MsG0180005668.01.T01:intron 50.0%
TGTGACAGTACTTGCCATCC+TGG - Chr1:94747920-94747939 None:intergenic 50.0%
TTCGCGCGTTTGTGAAAAGC+GGG + Chr1:94746336-94746355 MsG0180005668.01.T01:intron 50.0%
TTGTAAGCAGCAAGTGCACC+AGG + Chr1:94747899-94747918 MsG0180005668.01.T01:CDS 50.0%
! CTTTTCACAAACGCGCGAAG+CGG - Chr1:94746335-94746354 None:intergenic 50.0%
! GGTTGACTTCATGGTTGAGG+TGG + Chr1:94746172-94746191 MsG0180005668.01.T01:intron 50.0%
!! GTTTCACGTCCGCTTTTACG+TGG + Chr1:94746358-94746377 MsG0180005668.01.T01:intron 50.0%
AAGCAGCAAGTGCACCAGGA+TGG + Chr1:94747903-94747922 MsG0180005668.01.T01:CDS 55.0%
ACAGGGTGAGATTCTCCCCA+TGG + Chr1:94745661-94745680 MsG0180005668.01.T01:intron 55.0%
ACCGCGTTTGACAACAGAGG+TGG - Chr1:94746252-94746271 None:intergenic 55.0%
CCGTAAGGGGTCCATCTACA+AGG - Chr1:94747861-94747880 None:intergenic 55.0%
GACTTCATGGTTGAGGTGGG+AGG + Chr1:94746176-94746195 MsG0180005668.01.T01:intron 55.0%
GGCCACCCCAAAAATTGACG+CGG - Chr1:94747192-94747211 None:intergenic 55.0%
GGTCAAAGCGGGCGCTATTA+CGG + Chr1:94746401-94746420 MsG0180005668.01.T01:intron 55.0%
GTATTGGGCCTTAGCCCCTA+GGG - Chr1:94746665-94746684 None:intergenic 55.0%
GTCAAAGCGGGCGCTATTAC+GGG + Chr1:94746402-94746421 MsG0180005668.01.T01:intron 55.0%
TGGTTGAGGTGGGAGGGTTA+AGG + Chr1:94746183-94746202 MsG0180005668.01.T01:intron 55.0%
! ACCGCGCCGCGTCAATTTTT+GGG + Chr1:94747183-94747202 MsG0180005668.01.T01:intron 55.0%
! AGTATTGGGCCTTAGCCCCT+AGG - Chr1:94746666-94746685 None:intergenic 55.0%
! TACCGCGCCGCGTCAATTTT+TGG + Chr1:94747182-94747201 MsG0180005668.01.T01:intron 55.0%
!! ACGTCCGCTTTTACGTGGAG+CGG + Chr1:94746363-94746382 MsG0180005668.01.T01:intron 55.0%
!! CTGACGCGGTAGGCTGATTT+TGG - Chr1:94746305-94746324 None:intergenic 55.0%
AAGCGGGCGCTATTACGGGT+CGG + Chr1:94746406-94746425 MsG0180005668.01.T01:intron 60.0%
AATTGACGCGGCGCGGTATG+CGG - Chr1:94747180-94747199 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG - Chr1:94747187-94747206 None:intergenic 60.0%
CGCTCCGCTCCACGTAAAAG+CGG - Chr1:94746370-94746389 None:intergenic 60.0%
GAGGTGGGAGGGTTAAGGAG+TGG + Chr1:94746188-94746207 MsG0180005668.01.T01:intron 60.0%
GCAGGAGTCTGTGCGATGTG+TGG + Chr1:94748044-94748063 MsG0180005668.01.T01:intron 60.0%
GCGACCGCGTTTGACAACAG+AGG - Chr1:94746255-94746274 None:intergenic 60.0%
GCGGGGGCTATTACATGACG+CGG - Chr1:94747150-94747169 None:intergenic 60.0%
TATCTGGGCCCTAGGGGCTA+AGG + Chr1:94746654-94746673 MsG0180005668.01.T01:intron 60.0%
TTCACAAACGCGCGAAGCGG+TGG - Chr1:94746332-94746351 None:intergenic 60.0%
TTGTCAAACGCGGTCGCTCC+CGG + Chr1:94746258-94746277 MsG0180005668.01.T01:intron 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG + Chr1:94747184-94747203 MsG0180005668.01.T01:intron 60.0%
! CGCTTTTACGTGGAGCGGAG+CGG + Chr1:94746368-94746387 MsG0180005668.01.T01:intron 60.0%
! GCTTTTACGTGGAGCGGAGC+GGG + Chr1:94746369-94746388 MsG0180005668.01.T01:intron 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG + Chr1:94747187-94747206 MsG0180005668.01.T01:intron 60.0%
!! GGGTCGATAGCGGGTCAAAG+CGG + Chr1:94746389-94746408 MsG0180005668.01.T01:intron 60.0%
!! GGTCGATAGCGGGTCAAAGC+GGG + Chr1:94746390-94746409 MsG0180005668.01.T01:intron 60.0%
ATTGACGCGGCGCGGTATGC+GGG - Chr1:94747179-94747198 None:intergenic 65.0%
GAAGCGGTGGCGTTCTGACG+CGG - Chr1:94746319-94746338 None:intergenic 65.0%
GTCAAAGCGGAAACGCGGCG+TGG - Chr1:94747218-94747237 None:intergenic 65.0%
CGGTGGCGTTCTGACGCGGT+AGG - Chr1:94746315-94746334 None:intergenic 70.0%
GAGCGGAGCGGGTCGATAGC+GGG + Chr1:94746380-94746399 MsG0180005668.01.T01:intron 70.0%
GGAGCGGAGCGGGTCGATAG+CGG + Chr1:94746379-94746398 MsG0180005668.01.T01:intron 70.0%
AGCGGAAACGCGGCGTGGCG+CGG - Chr1:94747213-94747232 None:intergenic 75.0%
CGCGGTATGCGGGCGTGACG+CGG - Chr1:94747169-94747188 None:intergenic 75.0%
CGGTATGCGGGCGTGACGCG+GGG - Chr1:94747167-94747186 None:intergenic 75.0%
GCGGTATGCGGGCGTGACGC+GGG - Chr1:94747168-94747187 None:intergenic 75.0%
GGTATGCGGGCGTGACGCGG+GGG - Chr1:94747166-94747185 None:intergenic 75.0%
GGTCGCTCCCGGCGCTATCG+CGG + Chr1:94746269-94746288 MsG0180005668.01.T01:intron 75.0%
! CTCCCGGCGCTATCGCGGCG+CGG + Chr1:94746274-94746293 MsG0180005668.01.T01:intron 80.0%
! CTCCGCGCCGCGATAGCGCC+GGG - Chr1:94746279-94746298 None:intergenic 80.0%
! GCTCCGCGCCGCGATAGCGC+CGG - Chr1:94746280-94746299 None:intergenic 80.0%
! GGCGCTATCGCGGCGCGGAG+CGG + Chr1:94746279-94746298 MsG0180005668.01.T01:intron 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 94744636 94748301 94744636 ID=MsG0180005668.01;Name=MsG0180005668.01
Chr1 mRNA 94744636 94748301 94744636 ID=MsG0180005668.01.T01;Parent=MsG0180005668.01;Name=MsG0180005668.01.T01;_AED=0.42;_eAED=0.42;_QI=0|1|1|1|0|0|4|189|141
Chr1 exon 94744636 94744786 94744636 ID=MsG0180005668.01.T01:exon:50186;Parent=MsG0180005668.01.T01
Chr1 exon 94744880 94744997 94744880 ID=MsG0180005668.01.T01:exon:50187;Parent=MsG0180005668.01.T01
Chr1 exon 94747866 94747957 94747866 ID=MsG0180005668.01.T01:exon:50188;Parent=MsG0180005668.01.T01
Chr1 exon 94748048 94748301 94748048 ID=MsG0180005668.01.T01:exon:50189;Parent=MsG0180005668.01.T01
Chr1 CDS 94744636 94744786 94744636 ID=MsG0180005668.01.T01:cds;Parent=MsG0180005668.01.T01
Chr1 CDS 94744880 94744997 94744880 ID=MsG0180005668.01.T01:cds;Parent=MsG0180005668.01.T01
Chr1 CDS 94747866 94747957 94747866 ID=MsG0180005668.01.T01:cds;Parent=MsG0180005668.01.T01
Chr1 CDS 94748048 94748112 94748048 ID=MsG0180005668.01.T01:cds;Parent=MsG0180005668.01.T01
Chr1 three_prime_UTR 94748113 94748301 94748113 ID=MsG0180005668.01.T01:three_prime_utr;Parent=MsG0180005668.01.T01
Gene Sequence

>MsG0180005668.01.T01

AACAAAAGCTCAAAACGACACGAATTAGCTGAAAAGGGGTATAGGGTTTTGATCCAAATCTTGGATATTCAAATTGGAAAATTCACTCACAATCAAATCAAATCAAATCAGCAATCAGAATCATTAGCGACTGCGATGGTCTGCGAAAAGTGTCAGAAGAAATTATCGAAGGTGATAGTACCAGATAAATGGAAAGAAGGTGCAAGCAATACTACTGAGGGTGGTGGCCGCAAAATCAACGAGAACAAACTCCTTTCCAAGAAGAACAGATGGACCCCTTACGGAACAACCAAGTGCATCATTTGTAAGCAGCAAGTGCACCAGGATGGCAAGTACTGTCACACGTGTGCTTACTCAAAAGGAGTCTGTGCGATGTGTGGCAAGCAAGTTCTTGACACCAAGTTTTATAAACAAAGCAACGTGTAG

Protein sequence

>MsG0180005668.01.T01

NKSSKRHELAEKGYRVLIQILDIQIGKFTHNQIKSNQQSESLATAMVCEKCQKKLSKVIVPDKWKEGASNTTEGGGRKINENKLLSKKNRWTPYGTTKCIICKQQVHQDGKYCHTCAYSKGVCAMCGKQVLDTKFYKQSNV*