AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006678.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006678.01.T01 MTR_2g012810 98.795 83 1 0 19 101 117 199 1.70e-53 166
MsG0280006678.01.T01 MTR_2g012810 98.795 83 1 0 19 101 159 241 6.37e-53 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 101 190 3.12e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 101 190 3.12e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 134 223 6.24e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 134 223 6.24e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 134 223 6.24e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 134 223 6.24e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 134 223 6.24e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 128 217 6.72e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 151 240 9.28e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 151 240 9.28e-44 142
MsG0280006678.01.T01 AT1G61150 77.778 90 19 1 11 99 151 240 9.28e-44 142
MsG0280006678.01.T01 AT4G09300 54.321 81 35 1 19 97 78 158 1.11e-21 84.0
MsG0280006678.01.T01 AT4G09300 54.321 81 35 1 19 97 138 218 3.57e-21 84.0
MsG0280006678.01.T01 AT4G09300 54.321 81 35 1 19 97 139 219 4.18e-21 84.0
MsG0280006678.01.T01 AT4G09300 54.321 81 35 1 19 97 139 219 4.18e-21 84.0
MsG0280006678.01.T01 AT4G09300 54.321 81 35 1 19 97 144 224 5.20e-21 83.6
MsG0280006678.01.T01 AT1G11110 55.556 81 34 1 19 97 132 212 5.28e-20 80.9
MsG0280006678.01.T01 AT1G11110 55.556 81 34 1 19 97 181 261 1.55e-19 80.5
MsG0280006678.01.T01 AT1G11110 55.556 81 34 1 19 97 188 268 1.83e-19 80.5

Find 23 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTCATCCAGCTGGTTT+TGG 0.077240 2:+4882770 None:intergenic
AAATTGTGTATTTACTTTAA+TGG 0.123751 2:-4882618 MsG0280006678.01.T01:three_prime_UTR
TAAAATCTTCAAATTGAAAT+TGG 0.196328 2:+4882677 None:intergenic
TTCAGCAAGCTAGGAAGTTT+TGG 0.235366 2:+4882808 None:intergenic
CAAACCCAATATCAGACTTT+TGG 0.278937 2:-4885233 MsG0280006678.01.T01:CDS
ATACTCCAAAAGTCTGATAT+TGG 0.281176 2:+4885228 None:intergenic
GCTTGCTGAAGATGTTGATA+TGG 0.321462 2:-4882795 MsG0280006678.01.T01:CDS
ACAAGCCAGAGTCACGAAAA+AGG 0.325763 2:-4884228 MsG0280006678.01.T01:intron
CAAAAGTCTGATATTGGGTT+TGG 0.341686 2:+4885234 None:intergenic
TACTCCAAAAGTCTGATATT+GGG 0.358978 2:+4885229 None:intergenic
AACCACTGGAACAGCTATCT+AGG 0.447707 2:+4882560 None:intergenic
ATGTCAAGAAGCTCTCCAAC+TGG 0.470536 2:+4884297 None:intergenic
AAGCAGCTTTCTCATCCAGC+TGG 0.493993 2:+4882764 None:intergenic
ATCAACATCTTCAGCAAGCT+AGG 0.516991 2:+4882799 None:intergenic
GGTTCTAGATGAAGTGATTG+TGG 0.531685 2:-4882654 MsG0280006678.01.T01:three_prime_UTR
CTTGCTGAAGATGTTGATAT+GGG 0.533069 2:-4882794 MsG0280006678.01.T01:CDS
GTACACCAGTATAAAACCAC+TGG 0.535850 2:+4882546 None:intergenic
ATCCTAGATAGCTGTTCCAG+TGG 0.539596 2:-4882562 MsG0280006678.01.T01:three_prime_UTR
GATATGGGCCCAAAACCAGC+TGG 0.582147 2:-4882779 MsG0280006678.01.T01:CDS
AGCATCTTCTAATGCAGCTG+TGG 0.585520 2:+4882720 None:intergenic
GATGTCTCTAACTGTCCAGT+TGG 0.596680 2:-4884312 MsG0280006678.01.T01:CDS
ACAGTTAGAGACATCTTCAA+AGG 0.634264 2:+4884320 None:intergenic
GTGGATAGATCATTTATGTG+AGG 0.659361 2:+4882739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTACTATTAATTTGTATTT+TGG + Chr2:4884072-4884091 None:intergenic 10.0%
!!! ATTTTCATTTAATATACTAT+AGG + Chr2:4884281-4884300 None:intergenic 10.0%
!! AAAAAAAAAGAAAAATCCAA+TGG + Chr2:4884366-4884385 None:intergenic 15.0%
!! AAATTGTGTATTTACTTTAA+TGG - Chr2:4885134-4885153 MsG0280006678.01.T01:intron 15.0%
!! CATTCAAAAAAAAAATATGA+GGG + Chr2:4883949-4883968 None:intergenic 15.0%
!! TAAAATCTTCAAATTGAAAT+TGG + Chr2:4885078-4885097 None:intergenic 15.0%
!! TTTAATAAATCTAGATTCTT+AGG - Chr2:4883698-4883717 MsG0280006678.01.T01:intron 15.0%
!!! AAAAGTACTGATATTAAATT+TGG - Chr2:4882729-4882748 MsG0280006678.01.T01:CDS 15.0%
!!! AATTTCAATTTGAAGATTTT+AGG - Chr2:4885077-4885096 MsG0280006678.01.T01:intron 15.0%
!!! TTTTTTAATGAAAAATTGTG+TGG - Chr2:4882874-4882893 MsG0280006678.01.T01:intron 15.0%
!! AAACAATATTAGCAAATTCT+AGG + Chr2:4884901-4884920 None:intergenic 20.0%
!! AACAATATTAGCAAATTCTA+GGG + Chr2:4884900-4884919 None:intergenic 20.0%
!! AATGAAGTGTATAATATACA+AGG - Chr2:4884427-4884446 MsG0280006678.01.T01:intron 20.0%
!! AGAAAAAGTGAAAAATACAA+GGG + Chr2:4882813-4882832 None:intergenic 20.0%
!! ATTATAAACAAAGATGCAAA+GGG + Chr2:4884176-4884195 None:intergenic 20.0%
!! CCATTCAAAAAAAAAATATG+AGG + Chr2:4883950-4883969 None:intergenic 20.0%
!! TTGAAGATGGAAAAATAATT+GGG + Chr2:4883057-4883076 None:intergenic 20.0%
!!! AGTTGTATTCTTTACATTTT+AGG - Chr2:4883775-4883794 MsG0280006678.01.T01:intron 20.0%
!!! CAAGTTTGAATTCATTTTTA+TGG + Chr2:4883637-4883656 None:intergenic 20.0%
!!! CCTCATATTTTTTTTTTGAA+TGG - Chr2:4883947-4883966 MsG0280006678.01.T01:intron 20.0%
!!! CTTTTTCTCAATTTTTTCAT+AGG - Chr2:4882825-4882844 MsG0280006678.01.T01:intron 20.0%
!!! TTTTCAATTTTGAAAGAACT+TGG - Chr2:4883337-4883356 MsG0280006678.01.T01:intron 20.0%
! AAAAAGTGAAAAATACAAGG+GGG + Chr2:4882811-4882830 None:intergenic 25.0%
! AATGTACAATAAAGGAATAG+TGG + Chr2:4883600-4883619 None:intergenic 25.0%
! ACACGAAAAATTCATTAGAA+TGG + Chr2:4883178-4883197 None:intergenic 25.0%
! ATAGTCAAGAAAAAGCAAAT+AGG - Chr2:4883297-4883316 MsG0280006678.01.T01:intron 25.0%
! ATCAGATTCCAATCATAATT+TGG + Chr2:4884038-4884057 None:intergenic 25.0%
! CATTATAAACAAAGATGCAA+AGG + Chr2:4884177-4884196 None:intergenic 25.0%
! CTTATTATTATTCATATGCC+AGG - Chr2:4883734-4883753 MsG0280006678.01.T01:intron 25.0%
! GAAAAAGTGAAAAATACAAG+GGG + Chr2:4882812-4882831 None:intergenic 25.0%
! GAATCTAGATTTATTAAAGC+AGG + Chr2:4883696-4883715 None:intergenic 25.0%
! GAGAAAAAGTGAAAAATACA+AGG + Chr2:4882814-4882833 None:intergenic 25.0%
! GTCGTTAGCAAAAAAATTAA+TGG + Chr2:4882912-4882931 None:intergenic 25.0%
! GTTGAAGATGGAAAAATAAT+TGG + Chr2:4883058-4883077 None:intergenic 25.0%
! GTTGAATTAACAAATTCTTC+AGG + Chr2:4884876-4884895 None:intergenic 25.0%
! TGAAGATGGAAAAATAATTG+GGG + Chr2:4883056-4883075 None:intergenic 25.0%
! TGTCATATTATAGCTTCATT+GGG - Chr2:4883204-4883223 MsG0280006678.01.T01:intron 25.0%
! TTGTCATATTATAGCTTCAT+TGG - Chr2:4883203-4883222 MsG0280006678.01.T01:intron 25.0%
!! CTATGAATTTTCATTTCACT+GGG - Chr2:4882766-4882785 MsG0280006678.01.T01:CDS 25.0%
!!! AATTTTTTCATAGGTCCATT+TGG - Chr2:4882834-4882853 MsG0280006678.01.T01:intron 25.0%
!!! TTTACATTTTAGGTATACCA+TGG - Chr2:4883785-4883804 MsG0280006678.01.T01:intron 25.0%
AAAAGTGAAAAATACAAGGG+GGG + Chr2:4882810-4882829 None:intergenic 30.0%
AAGGAAATCAATTGAACTAC+TGG + Chr2:4883885-4883904 None:intergenic 30.0%
ACCATCACAATGTACAATAA+AGG + Chr2:4883608-4883627 None:intergenic 30.0%
AGAGTTAGACAAATTGTGAA+GGG + Chr2:4883858-4883877 None:intergenic 30.0%
AGTTACAAAATGATTGATCC+TGG + Chr2:4883755-4883774 None:intergenic 30.0%
ATACTCCAAAAGTCTGATAT+TGG + Chr2:4882527-4882546 None:intergenic 30.0%
CCAGTGAAATGAAAATTCAT+AGG + Chr2:4882768-4882787 None:intergenic 30.0%
CTAACACATGCTTGAAATTT+GGG - Chr2:4883362-4883381 MsG0280006678.01.T01:intron 30.0%
GAAGATGGAAAAATAATTGG+GGG + Chr2:4883055-4883074 None:intergenic 30.0%
GGGTTTATTAACAGTGAAAT+AGG - Chr2:4883256-4883275 MsG0280006678.01.T01:intron 30.0%
GTCATATTATAGCTTCATTG+GGG - Chr2:4883205-4883224 MsG0280006678.01.T01:intron 30.0%
TACTCCAAAAGTCTGATATT+GGG + Chr2:4882526-4882545 None:intergenic 30.0%
TAGAGTTAGACAAATTGTGA+AGG + Chr2:4883859-4883878 None:intergenic 30.0%
TCCTTTATTGTACATTGTGA+TGG - Chr2:4883604-4883623 MsG0280006678.01.T01:intron 30.0%
TGAATAATAATAAGCCCTCT+CGG + Chr2:4883728-4883747 None:intergenic 30.0%
TGGTAATTTGGATAAAGGAT+TGG + Chr2:4884140-4884159 None:intergenic 30.0%
TGTTAGTAATAAGTCTCCTA+GGG + Chr2:4884322-4884341 None:intergenic 30.0%
TGTTATTCTATCATGTGTTG+TGG - Chr2:4884584-4884603 MsG0280006678.01.T01:intron 30.0%
TTCTGCAACCAAATTATGAT+TGG - Chr2:4884027-4884046 MsG0280006678.01.T01:intron 30.0%
! AAATCTTTGATGACACCAAA+TGG + Chr2:4882852-4882871 None:intergenic 30.0%
! AATTTGGATAAAGGATTGGT+AGG + Chr2:4884136-4884155 None:intergenic 30.0%
! ATTTGGATAAAGGATTGGTA+GGG + Chr2:4884135-4884154 None:intergenic 30.0%
! CCTATGAATTTTCATTTCAC+TGG - Chr2:4882765-4882784 MsG0280006678.01.T01:CDS 30.0%
! CTGGCATTTCTTTTATTGAT+GGG - Chr2:4883236-4883255 MsG0280006678.01.T01:intron 30.0%
! GCATTTGGTAATTTGGATAA+AGG + Chr2:4884145-4884164 None:intergenic 30.0%
! GTGATTCATATGAAGTACTT+TGG - Chr2:4882655-4882674 MsG0280006678.01.T01:three_prime_UTR 30.0%
! TCTGGCATTTCTTTTATTGA+TGG - Chr2:4883235-4883254 MsG0280006678.01.T01:intron 30.0%
! TTTAAAACATATTGCCACCA+TGG + Chr2:4883805-4883824 None:intergenic 30.0%
!! CTTCTTCTATTTTTCCATTC+CGG + Chr2:4883103-4883122 None:intergenic 30.0%
AAAGTGACAAGGACAAAAAG+AGG + Chr2:4882937-4882956 None:intergenic 35.0%
AACGTAACATGAATTCCCAA+CGG + Chr2:4883914-4883933 None:intergenic 35.0%
AAGTGACAAGGACAAAAAGA+GGG + Chr2:4882936-4882955 None:intergenic 35.0%
ACAGTTAGAGACATCTTCAA+AGG + Chr2:4883435-4883454 None:intergenic 35.0%
ACCTCTATGTAACTGCTATA+AGG + Chr2:4884206-4884225 None:intergenic 35.0%
AGAACACAACACATGACAAA+AGG + Chr2:4884790-4884809 None:intergenic 35.0%
AGGAATAGTGGCTGTTTAAT+TGG + Chr2:4883588-4883607 None:intergenic 35.0%
ATGTGGGATCTTGATAAAAG+AGG - Chr2:4882693-4882712 MsG0280006678.01.T01:three_prime_UTR 35.0%
ATTCTTCCAAAAAGCTTTGC+TGG + Chr2:4883390-4883409 None:intergenic 35.0%
ATTGATGTCTAACAGCAACT+CGG + Chr2:4884494-4884513 None:intergenic 35.0%
CAAAAGTCTGATATTGGGTT+TGG + Chr2:4882521-4882540 None:intergenic 35.0%
CAATGGATCTTCAAATCAAG+TGG + Chr2:4884349-4884368 None:intergenic 35.0%
CATGTTGAGCATGAACAAAA+TGG + Chr2:4884402-4884421 None:intergenic 35.0%
CTGTTAGTAATAAGTCTCCT+AGG + Chr2:4884323-4884342 None:intergenic 35.0%
CTTATAAAAGTTCTTCCCCT+AGG - Chr2:4884303-4884322 MsG0280006678.01.T01:CDS 35.0%
CTTGCTGAAGATGTTGATAT+GGG - Chr2:4884958-4884977 MsG0280006678.01.T01:intron 35.0%
CTTTCCCAATGAAAAGATGT+GGG + Chr2:4883985-4884004 None:intergenic 35.0%
GAACACAACACATGACAAAA+GGG + Chr2:4884789-4884808 None:intergenic 35.0%
GCTAACACATGCTTGAAATT+TGG - Chr2:4883361-4883380 MsG0280006678.01.T01:intron 35.0%
GTGGATAGATCATTTATGTG+AGG + Chr2:4885016-4885035 None:intergenic 35.0%
GTTAGTAATAAGTCTCCTAG+GGG + Chr2:4884321-4884340 None:intergenic 35.0%
TCCTTATAGCAGTTACATAG+AGG - Chr2:4884202-4884221 MsG0280006678.01.T01:intron 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - Chr2:4884689-4884708 MsG0280006678.01.T01:intron 35.0%
TCTTTCCCAATGAAAAGATG+TGG + Chr2:4883986-4884005 None:intergenic 35.0%
TGATGAGTACAAAAGTGACA+AGG + Chr2:4882948-4882967 None:intergenic 35.0%
TTAAGCTAACTCAAAAGGTG+AGG - Chr2:4882625-4882644 MsG0280006678.01.T01:three_prime_UTR 35.0%
TTGTTGTCATGTGACTGTTA+AGG - Chr2:4884639-4884658 MsG0280006678.01.T01:intron 35.0%
! AGACAAATTGTGAAGGGTTT+TGG + Chr2:4883852-4883871 None:intergenic 35.0%
! ATGTCCCACATCTTTTCATT+GGG - Chr2:4883978-4883997 MsG0280006678.01.T01:intron 35.0%
! CAAACCCAATATCAGACTTT+TGG - Chr2:4882519-4882538 MsG0280006678.01.T01:three_prime_UTR 35.0%
! CACTTGATTTGAAGATCCAT+TGG - Chr2:4884347-4884366 MsG0280006678.01.T01:CDS 35.0%
! TATGTCCCACATCTTTTCAT+TGG - Chr2:4883977-4883996 MsG0280006678.01.T01:intron 35.0%
! TTGGGAAAGATTTTGCTTTG+TGG - Chr2:4883996-4884015 MsG0280006678.01.T01:intron 35.0%
! TTTTGTTCATGCTCAACATG+CGG - Chr2:4884402-4884421 MsG0280006678.01.T01:intron 35.0%
!! AAGCTTTTTGGAAGAATTGG+AGG - Chr2:4883393-4883412 MsG0280006678.01.T01:intron 35.0%
!! ACATTTTAGGTATACCATGG+TGG - Chr2:4883788-4883807 MsG0280006678.01.T01:intron 35.0%
!! GCAAAGCTTTTTGGAAGAAT+TGG - Chr2:4883390-4883409 MsG0280006678.01.T01:intron 35.0%
!!! CTTTTGGAGTATGACAAATG+TGG - Chr2:4882535-4882554 MsG0280006678.01.T01:three_prime_UTR 35.0%
!!! TCACCTTTTGAGTTAGCTTA+AGG + Chr2:4882626-4882645 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + Chr2:4884690-4884709 None:intergenic 35.0%
AAACTTGTAGCGCTTGTAAG+CGG - Chr2:4883650-4883669 MsG0280006678.01.T01:intron 40.0%
AAAGATGCAAAGGGAAAGAG+GGG + Chr2:4884167-4884186 None:intergenic 40.0%
ACAAAGATGCAAAGGGAAAG+AGG + Chr2:4884169-4884188 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - Chr2:4884683-4884702 MsG0280006678.01.T01:intron 40.0%
ATCAACATCTTCAGCAAGCT+AGG + Chr2:4884956-4884975 None:intergenic 40.0%
CAAAGATGCAAAGGGAAAGA+GGG + Chr2:4884168-4884187 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - Chr2:4884684-4884703 MsG0280006678.01.T01:intron 40.0%
CTCAAGAAATTCGTGAGTCT+TGG - Chr2:4884105-4884124 MsG0280006678.01.T01:intron 40.0%
GGATGGCTCGTTAACAATTA+GGG - Chr2:4882556-4882575 MsG0280006678.01.T01:three_prime_UTR 40.0%
GTACACCAGTATAAAACCAC+TGG + Chr2:4885209-4885228 None:intergenic 40.0%
TATCAAGATCCCACATCAAC+TGG + Chr2:4882689-4882708 None:intergenic 40.0%
TATCATGTGTTGTGGTCTGA+GGG - Chr2:4884592-4884611 MsG0280006678.01.T01:intron 40.0%
TCATGTGACTGTTAAGGTCA+CGG - Chr2:4884645-4884664 MsG0280006678.01.T01:intron 40.0%
TGGAGTATGACAAATGTGGA+TGG - Chr2:4882539-4882558 MsG0280006678.01.T01:three_prime_UTR 40.0%
TGGATGGCTCGTTAACAATT+AGG - Chr2:4882555-4882574 MsG0280006678.01.T01:three_prime_UTR 40.0%
TTGTCATGTGTTGTGTTCTG+CGG - Chr2:4884791-4884810 MsG0280006678.01.T01:intron 40.0%
! GCTTGCTGAAGATGTTGATA+TGG - Chr2:4884957-4884976 MsG0280006678.01.T01:intron 40.0%
! TCAGCAAGCTAGGAAGTTTT+GGG + Chr2:4884946-4884965 None:intergenic 40.0%
! TTACATTTTCCTCTCCCCTT+GGG + Chr2:4883154-4883173 None:intergenic 40.0%
! TTCAGCAAGCTAGGAAGTTT+TGG + Chr2:4884947-4884966 None:intergenic 40.0%
! TTTACATTTTCCTCTCCCCT+TGG + Chr2:4883155-4883174 None:intergenic 40.0%
! TTTTCCATCTTCAACAGCAG+CGG - Chr2:4883063-4883082 MsG0280006678.01.T01:intron 40.0%
!! AAGAGGGGCATTTGGTAATT+TGG + Chr2:4884152-4884171 None:intergenic 40.0%
!! ACAAACCTTTTTCGTGACTC+TGG + Chr2:4883532-4883551 None:intergenic 40.0%
!! CTTCATTGGGGAAGTATTTC+TGG - Chr2:4883217-4883236 MsG0280006678.01.T01:intron 40.0%
!! GGTTCTAGATGAAGTGATTG+TGG - Chr2:4885098-4885117 MsG0280006678.01.T01:intron 40.0%
!!! CTGTTCCAGTGGTTTTATAC+TGG - Chr2:4885201-4885220 MsG0280006678.01.T01:intron 40.0%
!!! TTTCTCATCCAGCTGGTTTT+GGG + Chr2:4884984-4885003 None:intergenic 40.0%
AACCACTGGAACAGCTATCT+AGG + Chr2:4885195-4885214 None:intergenic 45.0%
ACAAGCCAGAGTCACGAAAA+AGG - Chr2:4883524-4883543 MsG0280006678.01.T01:intron 45.0%
AGATTCTTAGGAATGCCGAG+AGG - Chr2:4883710-4883729 MsG0280006678.01.T01:intron 45.0%
AGCATCTTCTAATGCAGCTG+TGG + Chr2:4885035-4885054 None:intergenic 45.0%
ATCATGTGTTGTGGTCTGAG+GGG - Chr2:4884593-4884612 MsG0280006678.01.T01:intron 45.0%
ATCCTAGATAGCTGTTCCAG+TGG - Chr2:4885190-4885209 MsG0280006678.01.T01:intron 45.0%
ATGTCAAGAAGCTCTCCAAC+TGG + Chr2:4883458-4883477 None:intergenic 45.0%
CATGTGACTGTTAAGGTCAC+GGG - Chr2:4884646-4884665 MsG0280006678.01.T01:intron 45.0%
CGTCCAATACACCAAATGGT+GGG - Chr2:4884715-4884734 MsG0280006678.01.T01:intron 45.0%
CTATCATGTGTTGTGGTCTG+AGG - Chr2:4884591-4884610 MsG0280006678.01.T01:intron 45.0%
CTGATCGAACTAATCCGGAA+TGG - Chr2:4883086-4883105 MsG0280006678.01.T01:intron 45.0%
GATGTCTCTAACTGTCCAGT+TGG - Chr2:4883440-4883459 MsG0280006678.01.T01:intron 45.0%
GATTCTTAGGAATGCCGAGA+GGG - Chr2:4883711-4883730 MsG0280006678.01.T01:intron 45.0%
GATTTCCTTTGCATGCCGTT+GGG - Chr2:4883896-4883915 MsG0280006678.01.T01:intron 45.0%
GCGCCTTAAGCTAACTCAAA+AGG - Chr2:4882620-4882639 MsG0280006678.01.T01:three_prime_UTR 45.0%
GCGTCTAAAAACAGCAAGTG+AGG - Chr2:4883484-4883503 MsG0280006678.01.T01:intron 45.0%
GGCTCGTTAACAATTAGGGT+AGG - Chr2:4882560-4882579 MsG0280006678.01.T01:three_prime_UTR 45.0%
GGGGTTTGTATCTAGTATGC+AGG + Chr2:4883036-4883055 None:intergenic 45.0%
TCCCACATCAACTGGAGTTA+TGG + Chr2:4882681-4882700 None:intergenic 45.0%
TGATTTCCTTTGCATGCCGT+TGG - Chr2:4883895-4883914 MsG0280006678.01.T01:intron 45.0%
! GCCATAACTCCAGTTGATGT+GGG - Chr2:4882677-4882696 MsG0280006678.01.T01:three_prime_UTR 45.0%
! TACATTTTCCTCTCCCCTTG+GGG + Chr2:4883153-4883172 None:intergenic 45.0%
! TGGGTTCCAGCAAAGCTTTT+TGG - Chr2:4883381-4883400 MsG0280006678.01.T01:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + Chr2:4884679-4884698 None:intergenic 45.0%
! TTGAGTTAGCTTAAGGCGCT+GGG + Chr2:4882619-4882638 None:intergenic 45.0%
! TTTGAGTTAGCTTAAGGCGC+TGG + Chr2:4882620-4882639 None:intergenic 45.0%
!! AGAAGCTCTAGAGTTTGCAC+AGG - Chr2:4883118-4883137 MsG0280006678.01.T01:intron 45.0%
!! CTTTCTCATCCAGCTGGTTT+TGG + Chr2:4884985-4885004 None:intergenic 45.0%
!!! CTAGGAAGTTTTGGGTCTGA+TGG + Chr2:4884938-4884957 None:intergenic 45.0%
AAGCAGCTTTCTCATCCAGC+TGG + Chr2:4884991-4885010 None:intergenic 50.0%
AGCGGCTGATCGAACTAATC+CGG - Chr2:4883081-4883100 MsG0280006678.01.T01:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + Chr2:4884622-4884641 None:intergenic 50.0%
CACATGACAAAAGGGCAACC+CGG + Chr2:4884781-4884800 None:intergenic 50.0%
GAATTCCCAACGGCATGCAA+AGG + Chr2:4883904-4883923 None:intergenic 50.0%
GCGTCCAATACACCAAATGG+TGG - Chr2:4884714-4884733 MsG0280006678.01.T01:intron 50.0%
GCTGCGTCCAATACACCAAA+TGG - Chr2:4884711-4884730 MsG0280006678.01.T01:intron 50.0%
TGTGTTGTGTTCTGCGGCTA+TGG - Chr2:4884797-4884816 MsG0280006678.01.T01:intron 50.0%
! GGCCATAACTCCAGTTGATG+TGG - Chr2:4882676-4882695 MsG0280006678.01.T01:three_prime_UTR 50.0%
!! AGCTCTAGAGTTTGCACAGG+AGG - Chr2:4883121-4883140 MsG0280006678.01.T01:intron 50.0%
!! CAAAGGGAAAGAGGGGCATT+TGG + Chr2:4884160-4884179 None:intergenic 50.0%
!! GGTCCCACCATTTGGTGTAT+TGG + Chr2:4884721-4884740 None:intergenic 50.0%
AAGGTCACGGGTTCAAGTCC+TGG - Chr2:4884658-4884677 MsG0280006678.01.T01:intron 55.0%
GATATGGGCCCAAAACCAGC+TGG - Chr2:4884973-4884992 MsG0280006678.01.T01:intron 55.0%
TCAGCCGCTGCTGTTGAAGA+TGG + Chr2:4883070-4883089 None:intergenic 55.0%
TGTGGTCTGAGGGGTAACCT+TGG - Chr2:4884602-4884621 MsG0280006678.01.T01:intron 55.0%
ACAGGAGGAGCTTGCCCCAA+GGG - Chr2:4883136-4883155 MsG0280006678.01.T01:intron 60.0%
ACTGAAGCTCCCGCATACGC+AGG + Chr2:4884755-4884774 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - Chr2:4884611-4884630 MsG0280006678.01.T01:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - Chr2:4884759-4884778 MsG0280006678.01.T01:intron 60.0%
CTGAAGCTCCCGCATACGCA+GGG + Chr2:4884754-4884773 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr2:4884727-4884746 MsG0280006678.01.T01:intron 60.0%
CACAGGAGGAGCTTGCCCCA+AGG - Chr2:4883135-4883154 MsG0280006678.01.T01:intron 65.0%
CAGGAGGAGCTTGCCCCAAG+GGG - Chr2:4883137-4883156 MsG0280006678.01.T01:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG + Chr2:4884742-4884761 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr2:4884729-4884748 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - Chr2:4884742-4884761 MsG0280006678.01.T01:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG + Chr2:4884743-4884762 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - Chr2:4884760-4884779 MsG0280006678.01.T01:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG - Chr2:4884743-4884762 MsG0280006678.01.T01:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + Chr2:4884744-4884763 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + Chr2:4884748-4884767 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + Chr2:4884749-4884768 None:intergenic 70.0%
GGAGCTTGCCCCAAGGGGAG+AGG - Chr2:4883142-4883161 MsG0280006678.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 4882511 4885263 4882511 ID=MsG0280006678.01;Name=MsG0280006678.01
Chr2 mRNA 4882511 4885263 4882511 ID=MsG0280006678.01.T01;Parent=MsG0280006678.01;Name=MsG0280006678.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.5|0.66|1|1|0.66|3|203|101
Chr2 exon 4882511 4882832 4882511 ID=MsG0280006678.01.T01:exon:1847;Parent=MsG0280006678.01.T01
Chr2 exon 4884229 4884383 4884229 ID=MsG0280006678.01.T01:exon:1846;Parent=MsG0280006678.01.T01
Chr2 exon 4885232 4885263 4885232 ID=MsG0280006678.01.T01:exon:1845;Parent=MsG0280006678.01.T01
Chr2 CDS 4885232 4885263 4885232 ID=MsG0280006678.01.T01:cds;Parent=MsG0280006678.01.T01
Chr2 CDS 4884229 4884383 4884229 ID=MsG0280006678.01.T01:cds;Parent=MsG0280006678.01.T01
Chr2 CDS 4882714 4882832 4882714 ID=MsG0280006678.01.T01:cds;Parent=MsG0280006678.01.T01
Chr2 three_prime_UTR 4882511 4882713 4882511 ID=MsG0280006678.01.T01:three_prime_utr;Parent=MsG0280006678.01.T01
Gene Sequence

>MsG0280006678.01.T01

ATGGGAACCAAACCCAATATCAGACTTTTGGACAAAGCTTTTTGGAAGAATTGGAGGACTGTTGCACTGCTTGCCTTTGAAGATGTCTCTAACTGTCCAGTTGGAGAGCTTCTTGACATATCACAGCGTCTAAAAACAGCAAGTGAGGTGAATGCAGCTATACTTACAAGCCAGAGTCACGAAAAAGACCCAAAACTTCCTAGCTTGCTGAAGATGTTGATATGGGCCCAAAACCAGCTGGATGAGAAAGCTGCTTTTCCTCACATAAATGATCTATCCACAGCTGCATTAGAAGATGCTGTTTAA

Protein sequence

>MsG0280006678.01.T01

MGTKPNIRLLDKAFWKNWRTVALLAFEDVSNCPVGELLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLIWAQNQLDEKAAFPHINDLSTAALEDAV*