AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316900 MtrunA17_Chr2g0289661 86.017 236 5 1 1 236 1 208 3.74e-142 396
Msa0316900 MtrunA17_Chr3g0100061 39.153 189 59 7 1 188 1 134 3.58e-24 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316900 AT4G22320.2 43.233 266 85 9 1 232 1 234 3.90e-51 166
Msa0316900 AT4G22320.1 43.071 267 85 9 1 232 1 235 1.06e-50 165
Msa0316900 AT5G55210.1 46.018 113 47 5 1 109 1 103 2.20e-20 85.1

Find 104 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTCTCTCTATAGATTAT+TGG 0.168660 2_4:-14195510 None:intergenic
CTTATTTCGACAGAATATTA+TGG 0.213818 2_4:+14201762 Msa0316900:three_prime_UTR
TCTATAGAGAGAGAAATAAA+AGG 0.232839 2_4:+14195517 Msa0316900:five_prime_UTR
TGAAAGTTTGGATTTGAGTT+TGG 0.236449 2_4:+14201393 Msa0316900:CDS
CCAAACTTTCATTGAGATCT+TGG 0.239878 2_4:-14201381 None:intergenic
ATTCTGTCGAAATAAGTATC+TGG 0.266492 2_4:-14201755 None:intergenic
GCAATTGAATCAGCCTCTAT+TGG 0.282241 2_4:-14200141 None:intergenic
CATTACCGTTGGCGTTGTTC+TGG 0.285973 2_4:-14195894 None:intergenic
TTATTCTTCAATGTCCTTGC+TGG 0.294270 2_4:+14201664 Msa0316900:three_prime_UTR
ATCCAAAGTCTCATTCTTGC+TGG 0.301781 2_4:-14200175 None:intergenic
ATTGGGACATCATTTATATC+AGG 0.312687 2_4:-14200204 None:intergenic
TTGTTCTGGCTTTGAGTAAT+AGG 0.314463 2_4:-14195880 None:intergenic
CCAAGATCTCAATGAAAGTT+TGG 0.320577 2_4:+14201381 Msa0316900:CDS
GAAAGTTTGGATTTGAGTTT+GGG 0.321986 2_4:+14201394 Msa0316900:CDS
TTATTTCGACAGAATATTAT+GGG 0.347407 2_4:+14201763 Msa0316900:three_prime_UTR
GGAAGGAGTTGGGGCCCGAC+TGG 0.365432 2_4:+14195669 Msa0316900:CDS
AAGTGATTCAGTCTTTATAT+TGG 0.372073 2_4:+14201538 Msa0316900:three_prime_UTR
CGACAGAATATTATGGGACT+TGG 0.378389 2_4:+14201769 Msa0316900:three_prime_UTR
TTCTTCTTCCATCTTCTAAC+CGG 0.386693 2_4:-14195736 None:intergenic
AGTGGTACCAAGACATGAAC+AGG 0.390541 2_4:+14201499 Msa0316900:three_prime_UTR
AACCGTTGCCGGTCCGTAAC+GGG 0.398651 2_4:-14195704 None:intergenic
TTTACCTCGCTTTCTTCCAT+TGG 0.399400 2_4:-14200222 None:intergenic
GAAGGAGTTGGGGCCCGACT+GGG 0.403600 2_4:+14195670 Msa0316900:CDS
TAGTTAAGATGGAAGGAGTT+GGG 0.405924 2_4:+14195659 Msa0316900:exon
ATCTGTTTAGTTAGTTAAGA+TGG 0.406788 2_4:+14195648 Msa0316900:exon
TTAGAAGATGGAAGAAGAAA+TGG 0.421147 2_4:+14195740 Msa0316900:CDS
GGTCCAGTGAAAACCGTTGC+CGG 0.427428 2_4:-14195715 None:intergenic
CTATAGAGAGAGAAATAAAA+GGG 0.430397 2_4:+14195518 Msa0316900:five_prime_UTR
AAGGAGTTGGGGCCCGACTG+GGG 0.435265 2_4:+14195671 Msa0316900:CDS
TTACCTCGCTTTCTTCCATT+GGG 0.437105 2_4:-14200221 None:intergenic
AGAGTGAAGGATGGTGGGAC+TGG 0.438391 2_4:-14199817 None:intergenic
GGATTGTTGTAGTGGCATAT+TGG 0.444744 2_4:+14201618 Msa0316900:three_prime_UTR
TGGATAAAGCTCATCAGAGT+TGG 0.445066 2_4:-14199778 None:intergenic
GGTCGAGGACCGCCCCAGTC+GGG 0.446534 2_4:-14195683 None:intergenic
TTGATTCGCGTTGTTGTTGT+TGG 0.447191 2_4:-14195797 None:intergenic
TAATGGAAATGGTAGTGTTA+AGG 0.450864 2_4:+14195912 Msa0316900:CDS
TAAGGATGCGGCGGTGGAGC+CGG 0.460006 2_4:+14195930 Msa0316900:CDS
TGCCGGTCCGTAACGGGTCG+AGG 0.461095 2_4:-14195698 None:intergenic
TTAGTTAAGATGGAAGGAGT+TGG 0.465864 2_4:+14195658 Msa0316900:exon
AACGCCAACGGTAATGGAAA+TGG 0.469248 2_4:+14195901 Msa0316900:CDS
GAGTGAAAATTCACTTCTGC+AGG 0.472039 2_4:-14201561 None:intergenic
CGCCGCGGTGGCTCTTCCAC+CGG 0.473021 2_4:-14195949 None:intergenic
AAAGTCTCATTCTTGCTGGT+TGG 0.473240 2_4:-14200171 None:intergenic
TAGAGGTGGATCGGAGTAAT+CGG 0.474960 2_4:+14195618 Msa0316900:five_prime_UTR
GGGCGGTCCTCGACCCGTTA+CGG 0.475450 2_4:+14195691 Msa0316900:CDS
AGGCCACCCTGTTCATGTCT+TGG 0.476308 2_4:-14201506 None:intergenic
CAGAACAACGCCAACGGTAA+TGG 0.484308 2_4:+14195895 Msa0316900:CDS
AACCAGCAAGAATGAGACTT+TGG 0.493904 2_4:+14200173 Msa0316900:CDS
TTCTGTCGAAATAAGTATCT+GGG 0.493983 2_4:-14201754 None:intergenic
AGAAGATGAGGTTACCGAAA+AGG 0.495946 2_4:+14200101 Msa0316900:CDS
GCGCAAGTTTAAATATGTTC+CGG 0.503111 2_4:+14195969 Msa0316900:CDS
GGGTCGAGGACCGCCCCAGT+CGG 0.506478 2_4:-14195684 None:intergenic
CTGATTAGAATATGTAATGC+AGG 0.511155 2_4:+14201688 Msa0316900:three_prime_UTR
TAGTGTTAAGGATGCGGCGG+TGG 0.519864 2_4:+14195924 Msa0316900:CDS
GACCCGTTACGGACCGGCAA+CGG 0.519944 2_4:+14195702 Msa0316900:CDS
GAGTGAAGGATGGTGGGACT+GGG 0.522076 2_4:-14199816 None:intergenic
GGATGCGGCGGTGGAGCCGG+TGG 0.522408 2_4:+14195933 Msa0316900:CDS
TCACTGGACCGGTTAGAAGA+TGG 0.523030 2_4:+14195728 Msa0316900:CDS
GTTTAGTTAGTTAAGATGGA+AGG 0.523466 2_4:+14195652 Msa0316900:exon
GGATAAAGCTCATCAGAGTT+GGG 0.524155 2_4:-14199777 None:intergenic
AAACCGTTGCCGGTCCGTAA+CGG 0.525502 2_4:-14195705 None:intergenic
TATCATTGTTAGAGGTGGAT+CGG 0.529797 2_4:+14195609 Msa0316900:five_prime_UTR
CAATCCAACCTAAAACAGCT+AGG 0.534797 2_4:-14201601 None:intergenic
ACTACCATTTCCATTACCGT+TGG 0.537906 2_4:-14195905 None:intergenic
TTTAGGTTGGATTGTTGTAG+TGG 0.541144 2_4:+14201610 Msa0316900:three_prime_UTR
AGATGAATCTAATCCAATAG+AGG 0.542007 2_4:+14200128 Msa0316900:CDS
GTCCTCGACCCGTTACGGAC+CGG 0.543170 2_4:+14195696 Msa0316900:CDS
ATAAATGCAACAGGTCTACA+AGG 0.545268 2_4:+14199746 Msa0316900:intron
TACTGAAGAGTGAAGGATGG+TGG 0.557344 2_4:-14199823 None:intergenic
TAGAAGATGGAAGAAGAAAT+GGG 0.558328 2_4:+14195741 Msa0316900:CDS
GAAGCAGAAGAAGAAGATGA+AGG 0.566557 2_4:-14195775 None:intergenic
TTGAGTTACTGACCATCTGT+AGG 0.578623 2_4:-14201466 None:intergenic
AACGGTAGTAACGGTAATAA+CGG 0.579507 2_4:+14195829 Msa0316900:CDS
TATTTAAACTTGCGCCGCGG+TGG 0.581873 2_4:-14195961 None:intergenic
GCGAATCAAAACCACGCTAA+CGG 0.583452 2_4:+14195811 Msa0316900:CDS
GAGTTGGGGCCCGACTGGGG+CGG 0.583534 2_4:+14195674 Msa0316900:CDS
AGTTAAGATGGAAGGAGTTG+GGG 0.584907 2_4:+14195660 Msa0316900:exon
TGATATAAATGATGTCCCAA+TGG 0.590965 2_4:+14200206 Msa0316900:CDS
TAACTCAAGGCGAACTCAAG+TGG 0.592781 2_4:+14201481 Msa0316900:exon
AAATGGTAGTGTTAAGGATG+CGG 0.594445 2_4:+14195918 Msa0316900:CDS
GCTTTATCCAGCTCCAACGA+GGG 0.600953 2_4:+14199791 Msa0316900:CDS
ACTGAAGAGTGAAGGATGGT+GGG 0.602340 2_4:-14199822 None:intergenic
TACCGTTACTACCGTTAGCG+TGG 0.602464 2_4:-14195822 None:intergenic
AAAACTAATCAACCTACAGA+TGG 0.605067 2_4:+14201454 Msa0316900:CDS
ACAAAATTACTGAAGAGTGA+AGG 0.608623 2_4:-14199830 None:intergenic
AAACGAGGCTACAGAAGATG+AGG 0.611248 2_4:+14200089 Msa0316900:CDS
AACCACGCTAACGGTAGTAA+CGG 0.617581 2_4:+14195820 Msa0316900:CDS
AATCCAACCTAAAACAGCTA+GGG 0.628319 2_4:-14201600 None:intergenic
AATTACTGAAGAGTGAAGGA+TGG 0.630258 2_4:-14199826 None:intergenic
TACAGATGGTCAGTAACTCA+AGG 0.631001 2_4:+14201468 Msa0316900:exon
CTGAATCACTTAGAATCATG+AGG 0.648923 2_4:-14201526 None:intergenic
CTTTATCCAGCTCCAACGAG+GGG 0.651634 2_4:+14199792 Msa0316900:CDS
TGGTAGTGTTAAGGATGCGG+CGG 0.652841 2_4:+14195921 Msa0316900:CDS
AGCTTTATCCAGCTCCAACG+AGG 0.653307 2_4:+14199790 Msa0316900:CDS
GGTGGATCGGAGTAATCGGA+AGG 0.653485 2_4:+14195622 Msa0316900:five_prime_UTR
CAAAGCCAGAACAACGCCAA+CGG 0.656094 2_4:+14195889 Msa0316900:CDS
GATGTAGGTTGCTGTACTAG+AGG 0.677780 2_4:+14200059 Msa0316900:intron
TGTCCCAATGGAAGAAAGCG+AGG 0.691638 2_4:+14200218 Msa0316900:CDS
TTTATCCAGCTCCAACGAGG+GGG 0.695603 2_4:+14199793 Msa0316900:CDS
AGCCGGTGGAAGAGCCACCG+CGG 0.703301 2_4:+14195947 Msa0316900:CDS
ATATTCTAATCAGACCAGCA+AGG 0.732683 2_4:-14201678 None:intergenic
ACATATTTAAACTTGCGCCG+CGG 0.746093 2_4:-14195964 None:intergenic
GTGGTACCAAGACATGAACA+GGG 0.756050 2_4:+14201500 Msa0316900:three_prime_UTR
GTACCAAGACATGAACAGGG+TGG 0.813087 2_4:+14201503 Msa0316900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTAAAAGAAAAAAAT+TGG - chr2_4:14195575-14195594 None:intergenic 10.0%
!!! TTCTTTATTTATCTTTTTAT+TGG + chr2_4:14196018-14196037 Msa0316900:intron 10.0%
!! CTAATAATGATTAAAAAAAT+TGG + chr2_4:14196590-14196609 Msa0316900:intron 10.0%
!! CAAATTATTGAAAAATAATT+TGG - chr2_4:14197265-14197284 None:intergenic 10.0%
!! CAAATTATTGAAAAATAATT+TGG - chr2_4:14197265-14197284 None:intergenic 10.0%
!! AAAGAAAAAAATTGGATATT+TGG - chr2_4:14195567-14195586 None:intergenic 15.0%
!!! TCTAACAATGATAAAATTTT+TGG - chr2_4:14195602-14195621 None:intergenic 15.0%
!!! AAAAATTTTATCATTGTTAG+AGG + chr2_4:14195601-14195620 Msa0316900:five_prime_UTR 15.0%
!! TTTATTGGATTTGAATATTA+TGG + chr2_4:14196033-14196052 Msa0316900:intron 15.0%
!!! TATTTTTTATTTCAAGTGTT+TGG + chr2_4:14196665-14196684 Msa0316900:intron 15.0%
!!! TTTTTAATATATCTTTAGGA+TGG + chr2_4:14197343-14197362 Msa0316900:intron 15.0%
!! TTAAAAACAAAATCATTTGA+CGG - chr2_4:14197701-14197720 None:intergenic 15.0%
!!! ATGATTTTGTTTTTAAACAA+TGG + chr2_4:14197705-14197724 Msa0316900:intron 15.0%
!!! ATGATTTTTTGTTTAAGAAA+TGG + chr2_4:14198091-14198110 Msa0316900:intron 15.0%
!!! TTTGTTTTCTAAAAAATAGT+CGG + chr2_4:14199004-14199023 Msa0316900:intron 15.0%
!! AATTATTAAATGATTTATCG+TGG - chr2_4:14199929-14199948 None:intergenic 15.0%
!!! TTTCTTTTTAAAAGTTTGAA+TGG + chr2_4:14200441-14200460 Msa0316900:intron 15.0%
!!! ATATGTTTTCTTAAACTAAA+TGG + chr2_4:14200572-14200591 Msa0316900:intron 15.0%
!! TCAAATATTGTAAAAGAAAA+TGG - chr2_4:14200852-14200871 None:intergenic 15.0%
!!! TTTATTTTAAATTGCTAACA+AGG - chr2_4:14200997-14201016 None:intergenic 15.0%
!!! AAATTTTAGAAAATTGAAAC+AGG + chr2_4:14201020-14201039 Msa0316900:intron 15.0%
!! TACATAATAAAGGTAATAAA+AGG - chr2_4:14201313-14201332 None:intergenic 15.0%
!!! TTTTATAGGATGAATTCATA+GGG + chr2_4:14196139-14196158 Msa0316900:intron 20.0%
!!! GAATTAGCATTGATATTTTA+TGG + chr2_4:14196181-14196200 Msa0316900:intron 20.0%
!!! AAAATTGATTTTGACATGTT+CGG + chr2_4:14196263-14196282 Msa0316900:intron 20.0%
!!! AATTCAAGTTTAAATTCTGA+AGG - chr2_4:14196314-14196333 None:intergenic 20.0%
!!! GTTAATTGTTTGCATTTTTA+TGG + chr2_4:14196475-14196494 Msa0316900:intron 20.0%
!! GATTAAAAAAATTGGTGAAA+AGG + chr2_4:14196598-14196617 Msa0316900:intron 20.0%
!!! AAACTACCACAATTTTTTAT+GGG - chr2_4:14196956-14196975 None:intergenic 20.0%
!!! AAAACTACCACAATTTTTTA+TGG - chr2_4:14196957-14196976 None:intergenic 20.0%
!! TAAATATGATAAATGCAAGT+TGG + chr2_4:14197005-14197024 Msa0316900:intron 20.0%
!!! TAAAAGATAATTGAAGTGTT+AGG - chr2_4:14197755-14197774 None:intergenic 20.0%
!!! ACACTTCAATTATCTTTTAA+TGG + chr2_4:14197756-14197775 Msa0316900:intron 20.0%
!! CTATTAGTTATTAAAAAGAG+TGG + chr2_4:14197864-14197883 Msa0316900:intron 20.0%
!! TATTAAAAAGAGTGGTAAAA+CGG + chr2_4:14197872-14197891 Msa0316900:intron 20.0%
!!! TATAGGTACAAATTAGTTTT+TGG + chr2_4:14198000-14198019 Msa0316900:intron 20.0%
!! TACGAAATAAAGTTAACTAA+TGG + chr2_4:14198187-14198206 Msa0316900:intron 20.0%
!! ACGAAATAAAGTTAACTAAT+GGG + chr2_4:14198188-14198207 Msa0316900:intron 20.0%
!!! ATTGGCAAACAATAATTTTT+TGG + chr2_4:14198787-14198806 Msa0316900:intron 20.0%
!! TCATATAACTTTACAATACT+AGG + chr2_4:14199433-14199452 Msa0316900:intron 20.0%
!!! TTACATTCTGGAAAAATTTA+TGG - chr2_4:14200295-14200314 None:intergenic 20.0%
!!! TTTTTAAAAGTTTGAATGGT+GGG + chr2_4:14200445-14200464 Msa0316900:intron 20.0%
!!! TACTGACAAAAGTTTTTTTT+TGG - chr2_4:14200624-14200643 None:intergenic 20.0%
!! ATAATACATTAAGAAAGTTG+AGG - chr2_4:14200709-14200728 None:intergenic 20.0%
!! CTATATTCTCTTATATTGAT+TGG - chr2_4:14200812-14200831 None:intergenic 20.0%
!! TGCTCAATAAAAAAACTAAA+TGG + chr2_4:14201104-14201123 Msa0316900:intron 20.0%
!! GCTCAATAAAAAAACTAAAT+GGG + chr2_4:14201105-14201124 Msa0316900:intron 20.0%
!! TACCTTTATTATGTATAATG+AGG + chr2_4:14201318-14201337 Msa0316900:intron 20.0%
!! AAAAATTCTGTTCAATGATT+GGG - chr2_4:14201733-14201752 None:intergenic 20.0%
!! AAAAAATTCTGTTCAATGAT+TGG - chr2_4:14201734-14201753 None:intergenic 20.0%
!! TTATTTCGACAGAATATTAT+GGG + chr2_4:14201763-14201782 Msa0316900:three_prime_UTR 20.0%
! TTTCTCTCTCTATAGATTAT+TGG - chr2_4:14195513-14195532 None:intergenic 25.0%
! TCTATAGAGAGAGAAATAAA+AGG + chr2_4:14195517-14195536 Msa0316900:five_prime_UTR 25.0%
! CTATAGAGAGAGAAATAAAA+GGG + chr2_4:14195518-14195537 Msa0316900:five_prime_UTR 25.0%
!! AATTTTATCATTGTTAGAGG+TGG + chr2_4:14195604-14195623 Msa0316900:five_prime_UTR 25.0%
! ATCTGTTTAGTTAGTTAAGA+TGG + chr2_4:14195648-14195667 Msa0316900:exon 25.0%
!!! GGTTTTATGAGTTTAGTTTA+GGG + chr2_4:14196116-14196135 Msa0316900:intron 25.0%
!!! AGTTTAGTTTAGGGTTTTAT+AGG + chr2_4:14196125-14196144 Msa0316900:intron 25.0%
!! GTTTTATAGGATGAATTCAT+AGG + chr2_4:14196138-14196157 Msa0316900:intron 25.0%
! CAGAATTTAAACTTGAATTC+AGG + chr2_4:14196315-14196334 Msa0316900:intron 25.0%
!! AATTGATAATTAACTGACCA+AGG + chr2_4:14196498-14196517 Msa0316900:intron 25.0%
!! AAGATACTAAAATGTCCTTT+TGG + chr2_4:14196689-14196708 Msa0316900:intron 25.0%
! TTTCCAAATGACAAAAGTTT+AGG + chr2_4:14196716-14196735 Msa0316900:intron 25.0%
!! TTTAGGAACAAATTCGTTTT+TGG + chr2_4:14196733-14196752 Msa0316900:intron 25.0%
! AGAATTCCCATAAAAAATTG+TGG + chr2_4:14196947-14196966 Msa0316900:intron 25.0%
!! ATAATTGAAGTGTTAGGTTT+AGG - chr2_4:14197749-14197768 None:intergenic 25.0%
! TAGATAAAACACATTCTATG+AGG - chr2_4:14197847-14197866 None:intergenic 25.0%
!!! GAATTTTTTATCGAAGTGTT+CGG + chr2_4:14197932-14197951 Msa0316900:intron 25.0%
!! ATACTAAAATGCCTTTTTGT+CGG + chr2_4:14197959-14197978 Msa0316900:intron 25.0%
!!! TTAGTTTTTGGTTAACTTTG+TGG + chr2_4:14198012-14198031 Msa0316900:intron 25.0%
! TGTTTAATACATCTTTAGCA+TGG + chr2_4:14198597-14198616 Msa0316900:intron 25.0%
! TTGATATTGCTAATCCTTTA+AGG - chr2_4:14198741-14198760 None:intergenic 25.0%
! TCAAATGTCATGAATTTGAT+TGG + chr2_4:14198769-14198788 Msa0316900:intron 25.0%
!!! TTGGCTATTTTAATGTTAAG+TGG + chr2_4:14198806-14198825 Msa0316900:intron 25.0%
!!! AGACTTTTAGAACATCAATT+TGG - chr2_4:14198845-14198864 None:intergenic 25.0%
! ACAGAATATTCCATTATGTT+CGG - chr2_4:14199095-14199114 None:intergenic 25.0%
!!! ATATTCTGTTTTGTTCTCTT+TGG + chr2_4:14199106-14199125 Msa0316900:intron 25.0%
! CTTTACACGTAAATTAGAAT+GGG - chr2_4:14199190-14199209 None:intergenic 25.0%
!!! ATATGTTTTTTCTTGGTAGA+TGG - chr2_4:14199243-14199262 None:intergenic 25.0%
! TTTGATAAGTGTGTTAAACA+AGG - chr2_4:14199275-14199294 None:intergenic 25.0%
! AATAACACTTATGTTGGAAA+TGG + chr2_4:14199320-14199339 Msa0316900:intron 25.0%
! GATTCAAAAATTGACAACTA+TGG - chr2_4:14199415-14199434 None:intergenic 25.0%
! ATATATCATGTTCAGTAGTA+TGG + chr2_4:14199992-14200011 Msa0316900:intron 25.0%
! TATATCATGTTCAGTAGTAT+GGG + chr2_4:14199993-14200012 Msa0316900:intron 25.0%
! TAAACATGAAGTAAATGAAG+AGG - chr2_4:14200258-14200277 None:intergenic 25.0%
! TCTGGAAAAATTTATGGTAT+TGG - chr2_4:14200289-14200308 None:intergenic 25.0%
!!! TTGTTTTTGTAGTTAGAATC+AGG + chr2_4:14200366-14200385 Msa0316900:intron 25.0%
!!! AGAAGTTTCTATCTTTTTCA+TGG + chr2_4:14200405-14200424 Msa0316900:intron 25.0%
!!! CTTTTTAAAAGTTTGAATGG+TGG + chr2_4:14200444-14200463 Msa0316900:intron 25.0%
!! TTTTAAATGTGTCCAAGAAA+TGG - chr2_4:14200504-14200523 None:intergenic 25.0%
! CAGAAACACGATAAATAAAT+GGG - chr2_4:14200771-14200790 None:intergenic 25.0%
! ACAGAAACACGATAAATAAA+TGG - chr2_4:14200772-14200791 None:intergenic 25.0%
!! AATGTTTTCCAAAAGTAATC+AGG + chr2_4:14201044-14201063 Msa0316900:intron 25.0%
! GTCCTCATTATACATAATAA+AGG - chr2_4:14201323-14201342 None:intergenic 25.0%
! AAGTGATTCAGTCTTTATAT+TGG + chr2_4:14201538-14201557 Msa0316900:three_prime_UTR 25.0%
! CTTATTTCGACAGAATATTA+TGG + chr2_4:14201762-14201781 Msa0316900:three_prime_UTR 25.0%
GTTTAGTTAGTTAAGATGGA+AGG + chr2_4:14195652-14195671 Msa0316900:exon 30.0%
TTAGAAGATGGAAGAAGAAA+TGG + chr2_4:14195740-14195759 Msa0316900:CDS 30.0%
TAGAAGATGGAAGAAGAAAT+GGG + chr2_4:14195741-14195760 Msa0316900:CDS 30.0%
!! CTCATCTTCTTCTTTTTAAG+TGG + chr2_4:14195854-14195873 Msa0316900:CDS 30.0%
! TAATGGAAATGGTAGTGTTA+AGG + chr2_4:14195912-14195931 Msa0316900:CDS 30.0%
GCATTGTAATTGAACATTAC+CGG - chr2_4:14195991-14196010 None:intergenic 30.0%
!! GGGTTTTATGAGTTTAGTTT+AGG + chr2_4:14196115-14196134 Msa0316900:intron 30.0%
TGGATGCTGATATATATGTT+TGG + chr2_4:14196201-14196220 Msa0316900:intron 30.0%
GTAAAAATCACGTTTAGACT+CGG - chr2_4:14196352-14196371 None:intergenic 30.0%
AGAGTGATATGAATGTAAAG+TGG - chr2_4:14196426-14196445 None:intergenic 30.0%
AACAGAAACACAAACATGTT+TGG - chr2_4:14196458-14196477 None:intergenic 30.0%
CTGTTGTTCATCGTATTTAT+TGG + chr2_4:14196521-14196540 Msa0316900:intron 30.0%
AAAGGAAGATAAGTAGTGTA+AGG + chr2_4:14196616-14196635 Msa0316900:intron 30.0%
! GTTCCTAAACTTTTGTCATT+TGG - chr2_4:14196722-14196741 None:intergenic 30.0%
!!! TTCGTTTTTGGTTAACTTTG+CGG + chr2_4:14196745-14196764 Msa0316900:intron 30.0%
CAGTTTGATGAAACTAGAAT+CGG + chr2_4:14196791-14196810 Msa0316900:intron 30.0%
AGTTTGATGAAACTAGAATC+GGG + chr2_4:14196792-14196811 Msa0316900:intron 30.0%
! AAAATTGTGGTAGTTTTCGT+AGG + chr2_4:14196960-14196979 Msa0316900:intron 30.0%
! AAGGATTCTTTTTGTGGAAA+TGG + chr2_4:14197149-14197168 Msa0316900:intron 30.0%
! TTCTTTTTGTGGAAATGGAA+AGG + chr2_4:14197154-14197173 Msa0316900:intron 30.0%
ATGGAAAAAGAGGATCTATT+TGG + chr2_4:14197221-14197240 Msa0316900:intron 30.0%
!!! TGTTATTTTCTTTGTTCGTG+TGG + chr2_4:14197283-14197302 Msa0316900:intron 30.0%
! GTCGGTTCTATTGTTATATT+AGG + chr2_4:14197396-14197415 Msa0316900:intron 30.0%
ACATTTGAGGACTAAATTGA+GGG - chr2_4:14197472-14197491 None:intergenic 30.0%
AATCAACTTCATGACATTTG+AGG - chr2_4:14197485-14197504 None:intergenic 30.0%
! TCAAATGTCATGAAGTTGAT+TGG + chr2_4:14197484-14197503 Msa0316900:intron 30.0%
ATTGGTAAACAAGAAGTTCT+GGG + chr2_4:14197502-14197521 Msa0316900:intron 30.0%
ACTGATAGGATTTCAAATTG+AGG + chr2_4:14197659-14197678 Msa0316900:intron 30.0%
AGGATTTCAAATTGAGGTAT+TGG + chr2_4:14197665-14197684 Msa0316900:intron 30.0%
AATACCATGTACAACAATCT+TGG - chr2_4:14197799-14197818 None:intergenic 30.0%
ATTCTATGAGGTAAATCTAC+GGG - chr2_4:14197835-14197854 None:intergenic 30.0%
CATTCTATGAGGTAAATCTA+CGG - chr2_4:14197836-14197855 None:intergenic 30.0%
!! GTTTTGATGAAACTAGAATC+AGG + chr2_4:14198060-14198079 Msa0316900:intron 30.0%
ATGGGAACTCATACAAAAAA+TGG + chr2_4:14198206-14198225 Msa0316900:intron 30.0%
AAATCATCTACAATAAACGC+AGG + chr2_4:14198258-14198277 Msa0316900:intron 30.0%
ACTCTCTTATTCTCATTCTT+TGG - chr2_4:14198373-14198392 None:intergenic 30.0%
!!! AAGGATTATTTTGGTGGAAA+TGG + chr2_4:14198406-14198425 Msa0316900:intron 30.0%
!!! TTATTTTGGTGGAAATGGAA+AGG + chr2_4:14198411-14198430 Msa0316900:intron 30.0%
TATCTTTACATAGTGGTTTG+TGG + chr2_4:14198439-14198458 Msa0316900:intron 30.0%
ACAAAGTCTAATGGAAAAAG+AGG + chr2_4:14198468-14198487 Msa0316900:intron 30.0%
! GTTATTGTCTTTATTTCGTG+TGG + chr2_4:14198536-14198555 Msa0316900:intron 30.0%
CAAAAAAAGTTTACCCAAGA+TGG - chr2_4:14198631-14198650 None:intergenic 30.0%
AGGGTTTACAGTTAATTGTA+CGG - chr2_4:14197453-14197472 None:intergenic 30.0%
! TCCTTTAAGGACTAAATTGA+GGG - chr2_4:14198728-14198747 None:intergenic 30.0%
! ATCCTTTAAGGACTAAATTG+AGG - chr2_4:14198729-14198748 None:intergenic 30.0%
!! TTGATGTTCTAAAAGTCTTG+AGG + chr2_4:14198847-14198866 Msa0316900:intron 30.0%
!!! TACGTTTTGATTCCACTAAA+TGG - chr2_4:14199148-14199167 None:intergenic 30.0%
TGGGAAATGAAGTTTAAAAG+TGG - chr2_4:14199171-14199190 None:intergenic 30.0%
GCTTTACACGTAAATTAGAA+TGG - chr2_4:14199191-14199210 None:intergenic 30.0%
!!! GGGACATATATGTTTTTTCT+TGG - chr2_4:14199250-14199269 None:intergenic 30.0%
TAAGTGTGTTAAACAAGGAT+GGG - chr2_4:14199270-14199289 None:intergenic 30.0%
ATAAGTGTGTTAAACAAGGA+TGG - chr2_4:14199271-14199290 None:intergenic 30.0%
!!! CATAAGTGTTATTTTCCCAA+GGG - chr2_4:14199313-14199332 None:intergenic 30.0%
!!! ACATAAGTGTTATTTTCCCA+AGG - chr2_4:14199314-14199333 None:intergenic 30.0%
TGGGAAAATAACACTTATGT+TGG + chr2_4:14199314-14199333 Msa0316900:intron 30.0%
TACATAAAAAAGACCGTTGA+AGG - chr2_4:14199355-14199374 None:intergenic 30.0%
TGATCAACAAATGTGTTTGA+GGG - chr2_4:14199379-14199398 None:intergenic 30.0%
TGTGAACTCATCTATAAACA+AGG + chr2_4:14199665-14199684 Msa0316900:intron 30.0%
GTGAACTCATCTATAAACAA+GGG + chr2_4:14199666-14199685 Msa0316900:intron 30.0%
TGAACTCATCTATAAACAAG+GGG + chr2_4:14199667-14199686 Msa0316900:intron 30.0%
ACAAAATTACTGAAGAGTGA+AGG - chr2_4:14199833-14199852 None:intergenic 30.0%
ATATCATGTTCAGTAGTATG+GGG + chr2_4:14199994-14200013 Msa0316900:intron 30.0%
! AGATTCATCTTCAACCTTTT+CGG - chr2_4:14200118-14200137 None:intergenic 30.0%
AGATGAATCTAATCCAATAG+AGG + chr2_4:14200128-14200147 Msa0316900:CDS 30.0%
ATTGGGACATCATTTATATC+AGG - chr2_4:14200207-14200226 None:intergenic 30.0%
TGATATAAATGATGTCCCAA+TGG + chr2_4:14200206-14200225 Msa0316900:CDS 30.0%
! TCCCTTTTATCAATCTAAGT+CGG - chr2_4:14200345-14200364 None:intergenic 30.0%
TTTGACAACTGTTTGAAGAT+TGG + chr2_4:14200664-14200683 Msa0316900:intron 30.0%
ATACATTAAGAAAGTTGAGG+AGG - chr2_4:14200706-14200725 None:intergenic 30.0%
TGTATTATGTCTGATGCATT+AGG + chr2_4:14200721-14200740 Msa0316900:intron 30.0%
GTATTATGTCTGATGCATTA+GGG + chr2_4:14200722-14200741 Msa0316900:intron 30.0%
TATTATGTCTGATGCATTAG+GGG + chr2_4:14200723-14200742 Msa0316900:intron 30.0%
GAAAATGGTGTGAAAAATGT+TGG - chr2_4:14200837-14200856 None:intergenic 30.0%
TTAAATTGCTAACAAGGAGA+TGG - chr2_4:14200991-14201010 None:intergenic 30.0%
! AACTATGTCCTGATTACTTT+TGG - chr2_4:14201055-14201074 None:intergenic 30.0%
TGAAACAATAACAGAGGAAA+AGG - chr2_4:14201081-14201100 None:intergenic 30.0%
! TAGACTTTGGACAAGTTTTA+TGG + chr2_4:14201141-14201160 Msa0316900:intron 30.0%
! TGAAAGTTTGGATTTGAGTT+TGG + chr2_4:14201393-14201412 Msa0316900:CDS 30.0%
! GAAAGTTTGGATTTGAGTTT+GGG + chr2_4:14201394-14201413 Msa0316900:CDS 30.0%
AAAACTAATCAACCTACAGA+TGG + chr2_4:14201454-14201473 Msa0316900:CDS 30.0%
CTGATTAGAATATGTAATGC+AGG + chr2_4:14201688-14201707 Msa0316900:three_prime_UTR 30.0%
TTCTGTCGAAATAAGTATCT+GGG - chr2_4:14201757-14201776 None:intergenic 30.0%
ATTCTGTCGAAATAAGTATC+TGG - chr2_4:14201758-14201777 None:intergenic 30.0%
TATCATTGTTAGAGGTGGAT+CGG + chr2_4:14195609-14195628 Msa0316900:five_prime_UTR 35.0%
TTAGTTAAGATGGAAGGAGT+TGG + chr2_4:14195658-14195677 Msa0316900:exon 35.0%
TAGTTAAGATGGAAGGAGTT+GGG + chr2_4:14195659-14195678 Msa0316900:exon 35.0%
TTCTTCTTCCATCTTCTAAC+CGG - chr2_4:14195739-14195758 None:intergenic 35.0%
AACGGTAGTAACGGTAATAA+CGG + chr2_4:14195829-14195848 Msa0316900:CDS 35.0%
!! TTGTTCTGGCTTTGAGTAAT+AGG - chr2_4:14195883-14195902 None:intergenic 35.0%
! AAATGGTAGTGTTAAGGATG+CGG + chr2_4:14195918-14195937 Msa0316900:CDS 35.0%
GCGCAAGTTTAAATATGTTC+CGG + chr2_4:14195969-14195988 Msa0316900:CDS 35.0%
! TATATGTTTGGTTCCACGTT+TGG + chr2_4:14196213-14196232 Msa0316900:intron 35.0%
! AATGTAAAGTGGCTTGTGTT+TGG - chr2_4:14196415-14196434 None:intergenic 35.0%
AATGTACCGAGATGGAAATA+TGG + chr2_4:14196864-14196883 Msa0316900:intron 35.0%
ATGGAAATATGGATGCCTTA+CGG + chr2_4:14196875-14196894 Msa0316900:intron 35.0%
! AGTTTTCGTAGGATTGGATT+TGG + chr2_4:14196971-14196990 Msa0316900:intron 35.0%
! GAATGAGAATCCAAGAGTAT+TGG + chr2_4:14197118-14197137 Msa0316900:intron 35.0%
TATCTTTACACTGTGGTTTG+TGG + chr2_4:14197182-14197201 Msa0316900:intron 35.0%
TTTCCATTAGACTCTGACTA+TGG - chr2_4:14197208-14197227 None:intergenic 35.0%
TCAGAGTCTAATGGAAAAAG+AGG + chr2_4:14197211-14197230 Msa0316900:intron 35.0%
ATAACCATATACTGACACGA+TGG - chr2_4:14197323-14197342 None:intergenic 35.0%
!!! CTGGGAAAAGCTTTTTTTGT+CGG + chr2_4:14197378-14197397 Msa0316900:intron 35.0%
GACATTTGAGGACTAAATTG+AGG - chr2_4:14197473-14197492 None:intergenic 35.0%
GATTGGTAAACAAGAAGTTC+TGG + chr2_4:14197501-14197520 Msa0316900:intron 35.0%
TTGATGTTCTCAAAATCTCG+AGG + chr2_4:14197551-14197570 Msa0316900:intron 35.0%
AAAATCTCGAGGATCAGAAT+GGG + chr2_4:14197562-14197581 Msa0316900:intron 35.0%
CTAACTAACTCAAATGCATC+AGG - chr2_4:14197610-14197629 None:intergenic 35.0%
!! AAATTGAGGTATTGGCATGA+TGG + chr2_4:14197673-14197692 Msa0316900:intron 35.0%
! TTTGCGAATGACAGAAGTAT+AGG + chr2_4:14197983-14198002 Msa0316900:intron 35.0%
!! TGGTACTACTTGCTATAAGT+TGG + chr2_4:14198032-14198051 Msa0316900:intron 35.0%
TGGCATCTATATTTCCATCT+CGG - chr2_4:14198139-14198158 None:intergenic 35.0%
GGAACTCATACAAAAAATGG+CGG + chr2_4:14198209-14198228 Msa0316900:intron 35.0%
! GAATGAGAATAAGAGAGTGT+TGG + chr2_4:14198375-14198394 Msa0316900:intron 35.0%
GGAAGGATATCTTTACATAG+TGG + chr2_4:14198432-14198451 Msa0316900:intron 35.0%
TGGTTGTAGACAAAGTCTAA+TGG + chr2_4:14198459-14198478 Msa0316900:intron 35.0%
ATAACCACATACCAACACAA+CGG - chr2_4:14198576-14198595 None:intergenic 35.0%
GTCTGTTCTGTTGTTATATC+AGG + chr2_4:14198650-14198669 Msa0316900:intron 35.0%
ACCCTCAATTTAGTCCTTAA+AGG + chr2_4:14198724-14198743 Msa0316900:intron 35.0%
AAAAGTCTTGAGGATCAGAA+TGG + chr2_4:14198857-14198876 Msa0316900:intron 35.0%
AAAGTCTTGAGGATCAGAAT+GGG + chr2_4:14198858-14198877 Msa0316900:intron 35.0%
TCTAACAAACACAAGTGCAT+CGG - chr2_4:14198907-14198926 None:intergenic 35.0%
TATACCAAGACCGAACATAA+TGG + chr2_4:14199082-14199101 Msa0316900:intron 35.0%
TATTCCATTATGTTCGGTCT+TGG - chr2_4:14199089-14199108 None:intergenic 35.0%
CTCTTCAGTAATCCATTTAG+TGG + chr2_4:14199133-14199152 Msa0316900:intron 35.0%
!!! GTTTTTTCTTGGTAGATGGA+AGG - chr2_4:14199239-14199258 None:intergenic 35.0%
GATCAACAAATGTGTTTGAG+GGG - chr2_4:14199378-14199397 None:intergenic 35.0%
CTGATCAACAAATGTGTTTG+AGG - chr2_4:14199380-14199399 None:intergenic 35.0%
AACTCAAAAAGTTGCTTCTG+TGG + chr2_4:14199471-14199490 Msa0316900:intron 35.0%
TGAGTACAATACAATGACAG+TGG + chr2_4:14199528-14199547 Msa0316900:intron 35.0%
ACAACTGTGAGGTTAATGAT+TGG - chr2_4:14199610-14199629 None:intergenic 35.0%
ATAAATGCAACAGGTCTACA+AGG + chr2_4:14199746-14199765 Msa0316900:intron 35.0%
AATTACTGAAGAGTGAAGGA+TGG - chr2_4:14199829-14199848 None:intergenic 35.0%
TTTGTACTCCGTGATCTATT+TGG + chr2_4:14199848-14199867 Msa0316900:intron 35.0%
ATCAGAGACCAAATAGATCA+CGG - chr2_4:14199859-14199878 None:intergenic 35.0%
!! TCGTTTTGATGCTGATAATC+TGG + chr2_4:14199951-14199970 Msa0316900:intron 35.0%
!! CGTTTTGATGCTGATAATCT+GGG + chr2_4:14199952-14199971 Msa0316900:intron 35.0%
!! TGCCGACTTAGATTGATAAA+AGG + chr2_4:14200340-14200359 Msa0316900:intron 35.0%
! GCCGACTTAGATTGATAAAA+GGG + chr2_4:14200341-14200360 Msa0316900:intron 35.0%
!! ATGTTGCTTTCACCATTTCT+TGG + chr2_4:14200489-14200508 Msa0316900:intron 35.0%
ACAACTGTTTGAAGATTGGA+GGG + chr2_4:14200668-14200687 Msa0316900:intron 35.0%
CAATTGTGATAGAGAGAAGA+TGG - chr2_4:14200951-14200970 None:intergenic 35.0%
! GCAAGTTGAAACAATAACAG+AGG - chr2_4:14201087-14201106 None:intergenic 35.0%
!!! TCGTCTGTCATTTTAGACTT+TGG + chr2_4:14201128-14201147 Msa0316900:intron 35.0%
CCAAACTTTCATTGAGATCT+TGG - chr2_4:14201384-14201403 None:intergenic 35.0%
CCAAGATCTCAATGAAAGTT+TGG + chr2_4:14201381-14201400 Msa0316900:CDS 35.0%
CTGAATCACTTAGAATCATG+AGG - chr2_4:14201529-14201548 None:intergenic 35.0%
AATCCAACCTAAAACAGCTA+GGG - chr2_4:14201603-14201622 None:intergenic 35.0%
!! TTTAGGTTGGATTGTTGTAG+TGG + chr2_4:14201610-14201629 Msa0316900:three_prime_UTR 35.0%
TTATTCTTCAATGTCCTTGC+TGG + chr2_4:14201664-14201683 Msa0316900:three_prime_UTR 35.0%
ATATTCTAATCAGACCAGCA+AGG - chr2_4:14201681-14201700 None:intergenic 35.0%
AGTTAAGATGGAAGGAGTTG+GGG + chr2_4:14195660-14195679 Msa0316900:exon 40.0%
GAAGCAGAAGAAGAAGATGA+AGG - chr2_4:14195778-14195797 None:intergenic 40.0%
! TTGATTCGCGTTGTTGTTGT+TGG - chr2_4:14195800-14195819 None:intergenic 40.0%
ACTACCATTTCCATTACCGT+TGG - chr2_4:14195908-14195927 None:intergenic 40.0%
ACATATTTAAACTTGCGCCG+CGG - chr2_4:14195967-14195986 None:intergenic 40.0%
TCGTTTGATTCATGTAGTCG+AGG + chr2_4:14196058-14196077 Msa0316900:intron 40.0%
TTTGATTCATGTAGTCGAGG+TGG + chr2_4:14196061-14196080 Msa0316900:intron 40.0%
! AAGACGTGGTTGTTGTTGTT+CGG + chr2_4:14196094-14196113 Msa0316900:intron 40.0%
!! AGGGTTTTAGTGTCTGAGAA+TGG + chr2_4:14196158-14196177 Msa0316900:intron 40.0%
!! GGGTTTTAGTGTCTGAGAAT+GGG + chr2_4:14196159-14196178 Msa0316900:intron 40.0%
! GTGAGTTGAACGATAAACTG+TGG - chr2_4:14196376-14196395 None:intergenic 40.0%
AATACGATGAACAACAGCCT+TGG - chr2_4:14196518-14196537 None:intergenic 40.0%
TCATTTGGAAAGCTGCCAAA+AGG - chr2_4:14196707-14196726 None:intergenic 40.0%
TTGGTTAACTTTGCGGAACT+AGG + chr2_4:14196752-14196771 Msa0316900:intron 40.0%
TGGTTAACTTTGCGGAACTA+GGG + chr2_4:14196753-14196772 Msa0316900:intron 40.0%
AGGCATCCATATTTCCATCT+CGG - chr2_4:14196873-14196892 None:intergenic 40.0%
! TGTGGTAGTTTTCGTAGGAT+TGG + chr2_4:14196965-14196984 Msa0316900:intron 40.0%
ACTCTTGGATTCTCATTCTG+TGG - chr2_4:14197116-14197135 None:intergenic 40.0%
!! TGAGAATCCAAGAGTATTGG+AGG + chr2_4:14197121-14197140 Msa0316900:intron 40.0%
!! GAGAATCCAAGAGTATTGGA+GGG + chr2_4:14197122-14197141 Msa0316900:intron 40.0%
! GGAGACAAGGATTCTTTTTG+TGG + chr2_4:14197143-14197162 Msa0316900:intron 40.0%
! GGAAGCATATCTTTACACTG+TGG + chr2_4:14197175-14197194 Msa0316900:intron 40.0%
! ACATCAATTTGTTCCCTGAG+AGG - chr2_4:14197538-14197557 None:intergenic 40.0%
CAAAATCTCGAGGATCAGAA+TGG + chr2_4:14197561-14197580 Msa0316900:intron 40.0%
AAATCTCGAGGATCAGAATG+GGG + chr2_4:14197563-14197582 Msa0316900:intron 40.0%
AAATCCTATCAGTGATGCAG+CGG - chr2_4:14197652-14197671 None:intergenic 40.0%
CTGACCAAGATTGTTGTACA+TGG + chr2_4:14197792-14197811 Msa0316900:intron 40.0%
ATGGAAATATAGATGCCACG+TGG + chr2_4:14198141-14198160 Msa0316900:intron 40.0%
! AAATGGCGGTAGTTTTTGTG+AGG + chr2_4:14198223-14198242 Msa0316900:intron 40.0%
! CGGTAGTTTTTGTGAGGATA+GGG + chr2_4:14198229-14198248 Msa0316900:intron 40.0%
! GTTTTTGTGAGGATAGGGTT+TGG + chr2_4:14198234-14198253 Msa0316900:intron 40.0%
!! TGAGAATAAGAGAGTGTTGG+AGG + chr2_4:14198378-14198397 Msa0316900:intron 40.0%
!! GAGAATAAGAGAGTGTTGGA+GGG + chr2_4:14198379-14198398 Msa0316900:intron 40.0%
! GAGGGAGACAAGGATTATTT+TGG + chr2_4:14198397-14198416 Msa0316900:intron 40.0%
!!! GGAGACAAGGATTATTTTGG+TGG + chr2_4:14198400-14198419 Msa0316900:intron 40.0%
TTTGGTGGAAATGGAAAGGA+AGG + chr2_4:14198415-14198434 Msa0316900:intron 40.0%
TACTGATCTATCCGTTGTGT+TGG + chr2_4:14198562-14198581 Msa0316900:intron 40.0%
ATGTTAAGTGGCAGTAATCG+AGG + chr2_4:14198818-14198837 Msa0316900:intron 40.0%
CTAACAAACACAAGTGCATC+GGG - chr2_4:14198906-14198925 None:intergenic 40.0%
AAATCCTATCAGAGATGCAG+AGG - chr2_4:14198948-14198967 None:intergenic 40.0%
!!! TTACCTTTTTCGACAGTGCT+CGG + chr2_4:14199057-14199076 Msa0316900:intron 40.0%
ATCATTCAGCTACTGCTCTT+GGG - chr2_4:14199571-14199590 None:intergenic 40.0%
TATCATTCAGCTACTGCTCT+TGG - chr2_4:14199572-14199591 None:intergenic 40.0%
AGAGCAGTAGCTGAATGATA+TGG + chr2_4:14199572-14199591 Msa0316900:intron 40.0%
GAGCAGTAGCTGAATGATAT+GGG + chr2_4:14199573-14199592 Msa0316900:intron 40.0%
TGAGATGCTAGATCCATCTA+TGG - chr2_4:14199644-14199663 None:intergenic 40.0%
ACTCATCTATAAACAAGGGG+CGG + chr2_4:14199670-14199689 Msa0316900:intron 40.0%
AAGGCTGCAATAAATGCAAC+AGG + chr2_4:14199737-14199756 Msa0316900:intron 40.0%
GGATAAAGCTCATCAGAGTT+GGG - chr2_4:14199780-14199799 None:intergenic 40.0%
TGGATAAAGCTCATCAGAGT+TGG - chr2_4:14199781-14199800 None:intergenic 40.0%
TTTGATGCTGATAATCTGGG+TGG + chr2_4:14199955-14199974 Msa0316900:intron 40.0%
ATGTTCAGTAGTATGGGGAT+TGG + chr2_4:14199999-14200018 Msa0316900:intron 40.0%
TGTTCAGTAGTATGGGGATT+GGG + chr2_4:14200000-14200019 Msa0316900:intron 40.0%
! TCTGGACTATCTGATGATGT+AGG + chr2_4:14200044-14200063 Msa0316900:intron 40.0%
AGAAGATGAGGTTACCGAAA+AGG + chr2_4:14200101-14200120 Msa0316900:CDS 40.0%
GCAATTGAATCAGCCTCTAT+TGG - chr2_4:14200144-14200163 None:intergenic 40.0%
AAAGTCTCATTCTTGCTGGT+TGG - chr2_4:14200174-14200193 None:intergenic 40.0%
AACCAGCAAGAATGAGACTT+TGG + chr2_4:14200173-14200192 Msa0316900:CDS 40.0%
ATCCAAAGTCTCATTCTTGC+TGG - chr2_4:14200178-14200197 None:intergenic 40.0%
TTACCTCGCTTTCTTCCATT+GGG - chr2_4:14200224-14200243 None:intergenic 40.0%
TTTACCTCGCTTTCTTCCAT+TGG - chr2_4:14200225-14200244 None:intergenic 40.0%
GTAAATGAAGAGGCAAGCAA+GGG - chr2_4:14200248-14200267 None:intergenic 40.0%
AGTAAATGAAGAGGCAAGCA+AGG - chr2_4:14200249-14200268 None:intergenic 40.0%
GAGCTGCAGTTATTACATTC+TGG - chr2_4:14200307-14200326 None:intergenic 40.0%
! AATCTAAGTCGGCATTGAGT+TGG - chr2_4:14200334-14200353 None:intergenic 40.0%
GACAACTGTTTGAAGATTGG+AGG + chr2_4:14200667-14200686 Msa0316900:intron 40.0%
TGTGATAGAGAGAAGATGGA+AGG - chr2_4:14200947-14200966 None:intergenic 40.0%
!! ACTTCAATTGAGTTGGTCAC+AGG - chr2_4:14201254-14201273 None:intergenic 40.0%
GCTGTGAACTTCAATTGAGT+TGG - chr2_4:14201261-14201280 None:intergenic 40.0%
GGACTTTATATTTCAGCCTC+AGG + chr2_4:14201339-14201358 Msa0316900:intron 40.0%
! ACTACCTGATTTTTGTCCTG+AGG - chr2_4:14201358-14201377 None:intergenic 40.0%
TTGAGTTACTGACCATCTGT+AGG - chr2_4:14201469-14201488 None:intergenic 40.0%
TACAGATGGTCAGTAACTCA+AGG + chr2_4:14201468-14201487 Msa0316900:exon 40.0%
GAGTGAAAATTCACTTCTGC+AGG - chr2_4:14201564-14201583 None:intergenic 40.0%
! GCAGAAGTGAATTTTCACTC+TGG + chr2_4:14201564-14201583 Msa0316900:three_prime_UTR 40.0%
!! ATTCACTCCCTAGCTGTTTT+AGG + chr2_4:14201593-14201612 Msa0316900:three_prime_UTR 40.0%
CAATCCAACCTAAAACAGCT+AGG - chr2_4:14201604-14201623 None:intergenic 40.0%
GGATTGTTGTAGTGGCATAT+TGG + chr2_4:14201618-14201637 Msa0316900:three_prime_UTR 40.0%
CGACAGAATATTATGGGACT+TGG + chr2_4:14201769-14201788 Msa0316900:three_prime_UTR 40.0%
TAGAGGTGGATCGGAGTAAT+CGG + chr2_4:14195618-14195637 Msa0316900:five_prime_UTR 45.0%
GCGAATCAAAACCACGCTAA+CGG + chr2_4:14195811-14195830 Msa0316900:CDS 45.0%
AACCACGCTAACGGTAGTAA+CGG + chr2_4:14195820-14195839 Msa0316900:CDS 45.0%
!! AACGCCAACGGTAATGGAAA+TGG + chr2_4:14195901-14195920 Msa0316900:CDS 45.0%
ATGTAGTCGAGGTGGTTAGT+GGG + chr2_4:14196069-14196088 Msa0316900:intron 45.0%
! AGACGTGGTTGTTGTTGTTC+GGG + chr2_4:14196095-14196114 Msa0316900:intron 45.0%
AATTCTTGCTGCTCCAAACG+TGG - chr2_4:14196229-14196248 None:intergenic 45.0%
! GGAGCAGCAAGAATTGATTC+TGG + chr2_4:14196234-14196253 Msa0316900:intron 45.0%
CTAGCATGAATGTACCGAGA+TGG + chr2_4:14196856-14196875 Msa0316900:intron 45.0%
TTGTCTCCCTCCAATACTCT+TGG - chr2_4:14197131-14197150 None:intergenic 45.0%
!! AAGAGTATTGGAGGGAGACA+AGG + chr2_4:14197130-14197149 Msa0316900:intron 45.0%
TGGCCATAGTCAGAGTCTAA+TGG + chr2_4:14197202-14197221 Msa0316900:intron 45.0%
TACTGACACGATGGAGAGAT+CGG - chr2_4:14197314-14197333 None:intergenic 45.0%
CTCTCCATCGTGTCAGTATA+TGG + chr2_4:14197316-14197335 Msa0316900:intron 45.0%
!! AGGATGGATTGCTGATCATC+TGG + chr2_4:14197359-14197378 Msa0316900:intron 45.0%
!! GGATGGATTGCTGATCATCT+GGG + chr2_4:14197360-14197379 Msa0316900:intron 45.0%
TGGGCTATTTAATGCCTCTC+AGG + chr2_4:14197521-14197540 Msa0316900:intron 45.0%
GGGCTATTTAATGCCTCTCA+GGG + chr2_4:14197522-14197541 Msa0316900:intron 45.0%
AATCTCGAGGATCAGAATGG+GGG + chr2_4:14197564-14197583 Msa0316900:intron 45.0%
CATTCGCAAAGCCGACAAAA+AGG - chr2_4:14197973-14197992 None:intergenic 45.0%
ATACCATCAATGCACCGAGA+TGG + chr2_4:14198122-14198141 Msa0316900:intron 45.0%
! TTTCCATCTCGGTGCATTGA+TGG - chr2_4:14198128-14198147 None:intergenic 45.0%
TATAGATGCCACGTGGTGAA+AGG + chr2_4:14198148-14198167 Msa0316900:intron 45.0%
! GCGGTAGTTTTTGTGAGGAT+AGG + chr2_4:14198228-14198247 Msa0316900:intron 45.0%
! CTATCCGTTGTGTTGGTATG+TGG + chr2_4:14198569-14198588 Msa0316900:intron 45.0%
! CATGGATTGCTGACCATCTT+GGG + chr2_4:14198615-14198634 Msa0316900:intron 45.0%
TTTGCCTCTGCATCTCTGAT+AGG + chr2_4:14198941-14198960 Msa0316900:intron 45.0%
TGGTAGATGGAAGGAAGACA+TGG - chr2_4:14199230-14199249 None:intergenic 45.0%
! ATTTTCCCAAGGGAACACTG+AGG - chr2_4:14199303-14199322 None:intergenic 45.0%
! ATGGCTTGTGCAACCTTCAA+CGG + chr2_4:14199339-14199358 Msa0316900:intron 45.0%
AGTTGCTTCTGTGGTAGACT+TGG + chr2_4:14199480-14199499 Msa0316900:intron 45.0%
AGCTGAATGATATGGGTCTG+TGG + chr2_4:14199580-14199599 Msa0316900:intron 45.0%
AGACAAGTGCTACAACTGTG+AGG - chr2_4:14199621-14199640 None:intergenic 45.0%
GTAGCACTTGTCTCCATAGA+TGG + chr2_4:14199628-14199647 Msa0316900:intron 45.0%
AAGATATGCTGGGAGCTGTA+AGG - chr2_4:14199714-14199733 None:intergenic 45.0%
CAGCCTTGCAAAGATATGCT+GGG - chr2_4:14199724-14199743 None:intergenic 45.0%
ACTGAAGAGTGAAGGATGGT+GGG - chr2_4:14199825-14199844 None:intergenic 45.0%
TACTGAAGAGTGAAGGATGG+TGG - chr2_4:14199826-14199845 None:intergenic 45.0%
CTGATCTATTCTGCTATGCC+TGG + chr2_4:14199874-14199893 Msa0316900:intron 45.0%
! CGAAGTTGACTTCAAGTTCC+AGG - chr2_4:14199895-14199914 None:intergenic 45.0%
GCAATGACATGGTTGCAATC+TGG + chr2_4:14200026-14200045 Msa0316900:intron 45.0%
GATGTAGGTTGCTGTACTAG+AGG + chr2_4:14200059-14200078 Msa0316900:intron 45.0%
ACTAGAGGAGCAGAAAAACG+AGG + chr2_4:14200074-14200093 Msa0316900:CDS 45.0%
AAACGAGGCTACAGAAGATG+AGG + chr2_4:14200089-14200108 Msa0316900:CDS 45.0%
!! GCCATCATTCTGAGACGTTA+GGG + chr2_4:14200745-14200764 Msa0316900:intron 45.0%
TCAGCCTCAGGACAAAAATC+AGG + chr2_4:14201351-14201370 Msa0316900:intron 45.0%
TAACTCAAGGCGAACTCAAG+TGG + chr2_4:14201481-14201500 Msa0316900:exon 45.0%
AGTGGTACCAAGACATGAAC+AGG + chr2_4:14201499-14201518 Msa0316900:three_prime_UTR 45.0%
GTGGTACCAAGACATGAACA+GGG + chr2_4:14201500-14201519 Msa0316900:three_prime_UTR 45.0%
!! ACTCCCTAGCTGTTTTAGGT+TGG + chr2_4:14201597-14201616 Msa0316900:three_prime_UTR 45.0%
!!! TTATTTTTTAATATATCTTT+AGG + chr2_4:14197339-14197358 Msa0316900:intron 5.0%
TCACTGGACCGGTTAGAAGA+TGG + chr2_4:14195728-14195747 Msa0316900:CDS 50.0%
TACCGTTACTACCGTTAGCG+TGG - chr2_4:14195825-14195844 None:intergenic 50.0%
CAAAGCCAGAACAACGCCAA+CGG + chr2_4:14195889-14195908 Msa0316900:CDS 50.0%
CATTACCGTTGGCGTTGTTC+TGG - chr2_4:14195897-14195916 None:intergenic 50.0%
CAGAACAACGCCAACGGTAA+TGG + chr2_4:14195895-14195914 Msa0316900:CDS 50.0%
! TGGTAGTGTTAAGGATGCGG+CGG + chr2_4:14195921-14195940 Msa0316900:CDS 50.0%
TATTTAAACTTGCGCCGCGG+TGG - chr2_4:14195964-14195983 None:intergenic 50.0%
CATGTAGTCGAGGTGGTTAG+TGG + chr2_4:14196068-14196087 Msa0316900:intron 50.0%
GTGGTTAGTGGGATAAGACG+TGG + chr2_4:14196080-14196099 Msa0316900:intron 50.0%
TGACATGTTCGGTTGCTCTC+TGG + chr2_4:14196274-14196293 Msa0316900:intron 50.0%
GCGGAACTAGGGCTATAAGT+TGG + chr2_4:14196764-14196783 Msa0316900:intron 50.0%
TATGGATGCCTTACGGTGAG+CGG + chr2_4:14196882-14196901 Msa0316900:intron 50.0%
TTAGCCGCTGCATCACTGAT+AGG + chr2_4:14197645-14197664 Msa0316900:intron 50.0%
ACTCAACACCTTTCACCACG+TGG - chr2_4:14198159-14198178 None:intergenic 50.0%
!! GTGAAAGGTGTTGAGTGCTG+TGG + chr2_4:14198163-14198182 Msa0316900:intron 50.0%
! GCATGGATTGCTGACCATCT+TGG + chr2_4:14198614-14198633 Msa0316900:intron 50.0%
! ATGCCGAGCACTGTCGAAAA+AGG - chr2_4:14199063-14199082 None:intergenic 50.0%
ACACTACCTCAGTGTTCCCT+TGG + chr2_4:14199294-14199313 Msa0316900:intron 50.0%
CACTACCTCAGTGTTCCCTT+GGG + chr2_4:14199295-14199314 Msa0316900:intron 50.0%
GCTCCCAGCATATCTTTGCA+AGG + chr2_4:14199718-14199737 Msa0316900:intron 50.0%
GCAGCCTTGCAAAGATATGC+TGG - chr2_4:14199725-14199744 None:intergenic 50.0%
! AGCTTTATCCAGCTCCAACG+AGG + chr2_4:14199790-14199809 Msa0316900:CDS 50.0%
GCTTTATCCAGCTCCAACGA+GGG + chr2_4:14199791-14199810 Msa0316900:CDS 50.0%
CTTTATCCAGCTCCAACGAG+GGG + chr2_4:14199792-14199811 Msa0316900:CDS 50.0%
TTTATCCAGCTCCAACGAGG+GGG + chr2_4:14199793-14199812 Msa0316900:CDS 50.0%
CAGTAGTATGGGGATTGGGA+AGG + chr2_4:14200004-14200023 Msa0316900:intron 50.0%
GGATTGGGAAGGCAATGACA+TGG + chr2_4:14200015-14200034 Msa0316900:intron 50.0%
TGTCCCAATGGAAGAAAGCG+AGG + chr2_4:14200218-14200237 Msa0316900:CDS 50.0%
!! GGCCATCATTCTGAGACGTT+AGG + chr2_4:14200744-14200763 Msa0316900:intron 50.0%
GCCCTAACGTCTCAGAATGA+TGG - chr2_4:14200749-14200768 None:intergenic 50.0%
GTACCAAGACATGAACAGGG+TGG + chr2_4:14201503-14201522 Msa0316900:three_prime_UTR 50.0%
GGTGGATCGGAGTAATCGGA+AGG + chr2_4:14195622-14195641 Msa0316900:five_prime_UTR 55.0%
AAACCGTTGCCGGTCCGTAA+CGG - chr2_4:14195708-14195727 None:intergenic 55.0%
GGTCCAGTGAAAACCGTTGC+CGG - chr2_4:14195718-14195737 None:intergenic 55.0%
! GGCAACGGTTTTCACTGGAC+CGG + chr2_4:14195717-14195736 Msa0316900:CDS 55.0%
TAGTGTTAAGGATGCGGCGG+TGG + chr2_4:14195924-14195943 Msa0316900:CDS 55.0%
! GCGTCGTGGTGCTGAGATAA+CGG + chr2_4:14196915-14196934 Msa0316900:intron 55.0%
!! GAGAGTGTTGGAGGGAGACA+AGG + chr2_4:14198387-14198406 Msa0316900:intron 55.0%
!! GAGTGAAGGATGGTGGGACT+GGG - chr2_4:14199819-14199838 None:intergenic 55.0%
!! AGAGTGAAGGATGGTGGGAC+TGG - chr2_4:14199820-14199839 None:intergenic 55.0%
AGGCCACCCTGTTCATGTCT+TGG - chr2_4:14201509-14201528 None:intergenic 55.0%
AACCGTTGCCGGTCCGTAAC+GGG - chr2_4:14195707-14195726 None:intergenic 60.0%
! GGACCGGCAACGGTTTTCAC+TGG + chr2_4:14195712-14195731 Msa0316900:CDS 60.0%
GACAGACACCGCTCACCGTA+AGG - chr2_4:14196893-14196912 None:intergenic 60.0%
GAAGGAGTTGGGGCCCGACT+GGG + chr2_4:14195670-14195689 Msa0316900:CDS 65.0%
AAGGAGTTGGGGCCCGACTG+GGG + chr2_4:14195671-14195690 Msa0316900:CDS 65.0%
GTCCTCGACCCGTTACGGAC+CGG + chr2_4:14195696-14195715 Msa0316900:CDS 65.0%
GACCCGTTACGGACCGGCAA+CGG + chr2_4:14195702-14195721 Msa0316900:CDS 65.0%
TAAGGATGCGGCGGTGGAGC+CGG + chr2_4:14195930-14195949 Msa0316900:CDS 65.0%
GGAAGGAGTTGGGGCCCGAC+TGG + chr2_4:14195669-14195688 Msa0316900:CDS 70.0%
GGGCGGTCCTCGACCCGTTA+CGG + chr2_4:14195691-14195710 Msa0316900:CDS 70.0%
!! TGCCGGTCCGTAACGGGTCG+AGG - chr2_4:14195701-14195720 None:intergenic 70.0%
AGCCGGTGGAAGAGCCACCG+CGG + chr2_4:14195947-14195966 Msa0316900:CDS 70.0%
! GCGGTGTCTGTCGAGCGTCG+TGG + chr2_4:14196901-14196920 Msa0316900:intron 70.0%
GAGTTGGGGCCCGACTGGGG+CGG + chr2_4:14195674-14195693 Msa0316900:CDS 75.0%
GGTCGAGGACCGCCCCAGTC+GGG - chr2_4:14195686-14195705 None:intergenic 75.0%
GGGTCGAGGACCGCCCCAGT+CGG - chr2_4:14195687-14195706 None:intergenic 75.0%
CGCCGCGGTGGCTCTTCCAC+CGG - chr2_4:14195952-14195971 None:intergenic 75.0%
CTGGGCCCCCTCGTTGGAGC+TGG - chr2_4:14199801-14199820 None:intergenic 75.0%
GTGGGACTGGGCCCCCTCGT+TGG - chr2_4:14199807-14199826 None:intergenic 75.0%
! GGATGCGGCGGTGGAGCCGG+TGG + chr2_4:14195933-14195952 Msa0316900:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 14195505 14201808 14195505 ID=Msa0316900;Name=Msa0316900
chr2_4 mRNA 14195505 14201808 14195505 ID=Msa0316900-mRNA-1;Parent=Msa0316900;Name=Msa0316900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=162|0.33|0.75|0.75|1|1|4|325|236
chr2_4 exon 14195505 14195990 14195505 ID=Msa0316900-mRNA-1:exon:5398;Parent=Msa0316900-mRNA-1
chr2_4 exon 14199759 14199842 14199759 ID=Msa0316900-mRNA-1:exon:5399;Parent=Msa0316900-mRNA-1
chr2_4 exon 14200066 14200239 14200066 ID=Msa0316900-mRNA-1:exon:5400;Parent=Msa0316900-mRNA-1
chr2_4 exon 14201355 14201808 14201355 ID=Msa0316900-mRNA-1:exon:5401;Parent=Msa0316900-mRNA-1
chr2_4 five_prime_UTR 14195505 14195666 14195505 ID=Msa0316900-mRNA-1:five_prime_utr;Parent=Msa0316900-mRNA-1
chr2_4 CDS 14195667 14195990 14195667 ID=Msa0316900-mRNA-1:cds;Parent=Msa0316900-mRNA-1
chr2_4 CDS 14199759 14199842 14199759 ID=Msa0316900-mRNA-1:cds;Parent=Msa0316900-mRNA-1
chr2_4 CDS 14200066 14200239 14200066 ID=Msa0316900-mRNA-1:cds;Parent=Msa0316900-mRNA-1
chr2_4 CDS 14201355 14201483 14201355 ID=Msa0316900-mRNA-1:cds;Parent=Msa0316900-mRNA-1
chr2_4 three_prime_UTR 14201484 14201808 14201484 ID=Msa0316900-mRNA-1:three_prime_utr;Parent=Msa0316900-mRNA-1
Gene Sequence

>Msa0316900

ATGGAAGGAGTTGGGGCCCGACTGGGGCGGTCCTCGACCCGTTACGGACCGGCAACGGTTTTCACTGGACCGGTTAGAAGATGGAAGAAGAAATGGGTTCACGTTTCACCTTCATCTTCTTCTTCTGCTTCCAACAACAACAACGCGAATCAAAACCACGCTAACGGTAGTAACGGTAATAACGGTTCTCATCTTCTTCTTTTTAAGTGGACTCCTATTACTCAAAGCCAGAACAACGCCAACGGTAATGGAAATGGTAGTGTTAAGGATGCGGCGGTGGAGCCGGTGGAAGAGCCACCGCGGCGCAAGTTTAAATATGTTCCGGTCTACAAGGTAAGTGAACCCAACTCTGATGAGCTTTATCCAGCTCCAACGAGGGGGCCCAGTCCCACCATCCTTCACTCTTCAGTTGCTGTACTAGAGGAGCAGAAAAACGAGGCTACAGAAGATGAGGTTACCGAAAAGGTTGAAGATGAATCTAATCCAATAGAGGCTGATTCAATTGCAGCAGAACCAACCAGCAAGAATGAGACTTTGGATGAAAAACCTGATATAAATGATGTCCCAATGGAAGAAAGCGAGCCTCAGGACAAAAATCAGGTAGTACGCCAAGATCTCAATGAAAGTTTGGATTTGAGTTTGGGTTTGACATCACATGATGAAGATCAAGATTCTGATTCAAAAACTAATCAACCTACAGATGGTCAGTAA
Protein sequence

>Msa0316900

MEGVGARLGRSSTRYGPATVFTGPVRRWKKKWVHVSPSSSSSASNNNNANQNHANGSNGNNGSHLLLFKWTPITQSQNNANGNGNGSVKDAAVEPVEEPPRRKFKYVPVYKVSEPNSDELYPAPTRGPSPTILHSSVAVLEEQKNEATEDEVTEKVEDESNPIEADSIAAEPTSKNETLDEKPDINDVPMEESEPQDKNQVVRQDLNESLDLSLGLTSHDEDQDSDSKTNQPTDGQ*