AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1272480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272480 MtrunA17_Chr8g0338511 96.766 402 13 0 193 594 36 437 0.0 806
Msa1272480 MtrunA17_Chr8g0338511 61.053 190 46 4 22 185 28 215 3.86e-58 201
Msa1272480 MtrunA17_Chr8g0338471 78.908 403 80 2 193 594 31 429 0.0 662
Msa1272480 MtrunA17_Chr8g0338471 58.549 193 55 5 16 185 17 207 1.62e-54 198
Msa1272480 MtrunA17_Chr8g0338501 77.419 403 86 2 193 594 60 458 0.0 647
Msa1272480 MtrunA17_Chr8g0338501 57.368 190 56 5 19 185 49 236 4.39e-50 186
Msa1272480 MtrunA17_Chr8g0338521 69.972 363 98 5 198 557 6 360 1.75e-171 491
Msa1272480 MtrunA17_Chr8g0338521 56.983 179 48 6 35 185 6 183 5.95e-45 163
Msa1272480 MtrunA17_Chr8g0338531 67.045 352 93 4 250 594 8 343 3.09e-151 453
Msa1272480 MtrunA17_Chr8g0338531 50.000 130 38 4 78 185 7 131 1.61e-21 99.4
Msa1272480 MtrunA17_Chr2g0311541 45.088 397 213 5 194 587 22 416 1.56e-113 357
Msa1272480 MtrunA17_Chr2g0311541 36.082 194 89 8 11 175 3 190 2.25e-21 99.0
Msa1272480 MtrunA17_Chr2g0311551 45.316 395 211 5 194 587 263 653 2.09e-113 362
Msa1272480 MtrunA17_Chr2g0311551 38.378 185 83 7 27 185 259 438 1.06e-22 103
Msa1272480 MtrunA17_Chr8g0338481 67.782 239 52 1 355 593 1 214 6.66e-111 332
Msa1272480 MtrunA17_Chr2g0311521 44.444 396 215 5 194 587 264 656 6.03e-108 348
Msa1272480 MtrunA17_Chr2g0311521 39.655 174 77 5 28 175 261 432 2.41e-23 105
Msa1272480 MtrunA17_Chr5g0399591 41.604 399 208 12 201 583 34 423 2.57e-97 314
Msa1272480 MtrunA17_Chr5g0399591 34.568 162 71 7 38 167 34 192 1.22e-14 77.4
Msa1272480 MtrunA17_Chr5g0399561 40.050 402 216 12 198 583 32 424 9.23e-92 300
Msa1272480 MtrunA17_Chr5g0399561 33.166 199 94 8 1 167 1 192 2.26e-15 79.7
Msa1272480 MtrunA17_Chr2g0311511 42.857 322 172 8 193 504 38 357 1.38e-75 255
Msa1272480 MtrunA17_Chr2g0311511 34.359 195 83 11 27 185 35 220 2.18e-15 79.7
Msa1272480 MtrunA17_Chr5g0394381 32.010 403 237 17 202 594 34 409 1.42e-41 160
Msa1272480 MtrunA17_Chr4g0063701 31.051 409 242 17 204 594 51 437 3.88e-39 153
Msa1272480 MtrunA17_Chr4g0063691 29.302 430 266 17 171 580 17 428 8.21e-32 131
Msa1272480 MtrunA17_Chr3g0106141 30.504 377 236 11 196 565 24 381 9.57e-31 128
Msa1272480 MtrunA17_Chr3g0106201 27.851 377 243 9 196 564 24 379 4.05e-30 125
Msa1272480 MtrunA17_Chr0c04g0492001 27.384 409 263 15 192 587 27 414 1.59e-29 124
Msa1272480 MtrunA17_Chr3g0134291 27.384 409 263 15 192 587 27 414 4.40e-29 122
Msa1272480 MtrunA17_Chr0c04g0492031 27.384 409 263 15 192 587 27 414 4.77e-29 122
Msa1272480 MtrunA17_Chr3g0106121 28.641 412 259 12 196 594 24 413 1.46e-28 121
Msa1272480 MtrunA17_Chr3g0106131 28.049 410 262 10 196 594 24 411 1.59e-28 121
Msa1272480 MtrunA17_Chr3g0106211 28.954 373 234 11 196 558 27 378 3.49e-28 120
Msa1272480 MtrunA17_Chr3g0106151 28.358 402 241 14 207 594 38 406 1.61e-26 114
Msa1272480 MtrunA17_Chr3g0106221 28.150 373 224 12 207 559 37 385 9.66e-25 109
Msa1272480 MtrunA17_Chr7g0257821 27.692 390 235 16 208 586 45 398 3.72e-23 104
Msa1272480 MtrunA17_Chr1g0202331 25.124 402 245 15 208 570 41 425 2.92e-22 101
Msa1272480 MtrunA17_Chr4g0042391 26.923 364 228 13 207 558 40 377 1.29e-19 93.2
Msa1272480 MtrunA17_Chr3g0106191 28.691 359 214 13 245 594 2 327 3.02e-19 92.0
Msa1272480 MtrunA17_Chr4g0042351 26.171 363 228 14 209 558 42 377 6.56e-19 90.9
Msa1272480 MtrunA17_Chr8g0361311 28.042 378 214 17 207 559 39 383 2.76e-18 87.8
Msa1272480 MtrunA17_Chr8g0361251 27.676 383 209 17 207 559 39 383 1.01e-17 87.4
Msa1272480 MtrunA17_Chr7g0237341 25.964 389 246 15 207 580 43 404 1.94e-17 86.3
Msa1272480 MtrunA17_Chr7g0237331 25.126 398 254 12 207 588 44 413 2.40e-17 85.9
Msa1272480 MtrunA17_Chr2g0323301 26.110 383 222 16 207 560 42 392 3.53e-17 85.5
Msa1272480 MtrunA17_Chr8g0361301 27.056 377 220 15 207 560 40 384 5.50e-17 85.1
Msa1272480 MtrunA17_Chr4g0053161 24.638 414 263 16 194 588 49 432 8.13e-17 84.3
Msa1272480 MtrunA17_Chr3g0098791 23.936 376 229 14 207 560 46 386 8.83e-17 84.0
Msa1272480 MtrunA17_Chr4g0042381 25.000 364 236 12 207 558 39 377 3.11e-16 82.4
Msa1272480 MtrunA17_Chr3g0137741 26.902 368 220 18 206 564 52 379 3.32e-16 82.4
Msa1272480 MtrunA17_Chr3g0084621 24.084 382 224 13 207 560 44 387 5.67e-16 81.3
Msa1272480 MtrunA17_Chr7g0237351 23.501 417 275 16 194 594 30 418 9.43e-16 80.9
Msa1272480 MtrunA17_Chr2g0280751 26.110 383 231 16 207 569 50 400 1.19e-15 80.9
Msa1272480 MtrunA17_Chr2g0280731 25.984 381 233 15 207 569 46 395 3.37e-15 79.3
Msa1272480 MtrunA17_Chr8g0361261 26.790 377 221 15 207 560 71 415 3.39e-15 79.3
Msa1272480 MtrunA17_Chr2g0280701 25.459 381 222 17 207 560 38 383 4.33e-15 79.0
Msa1272480 MtrunA17_Chr3g0134321 33.766 154 95 4 207 355 38 189 4.94e-15 78.6
Msa1272480 MtrunA17_Chr4g0023071 23.636 385 237 14 207 563 42 397 8.78e-15 77.8
Msa1272480 MtrunA17_Chr2g0280681 24.934 377 222 16 207 558 43 383 8.88e-15 77.8
Msa1272480 MtrunA17_Chr3g0084651 23.747 379 228 14 207 558 41 385 9.31e-15 77.0
Msa1272480 MtrunA17_Chr3g0093161 24.074 378 254 12 195 560 25 381 9.61e-15 77.8
Msa1272480 MtrunA17_Chr8g0361441 24.796 367 243 12 207 560 42 388 1.79e-14 77.0
Msa1272480 MtrunA17_Chr2g0280841 23.786 412 255 17 214 593 53 437 2.35e-14 75.5
Msa1272480 MtrunA17_Chr3g0084681 25.000 372 233 15 207 560 44 387 2.90e-14 76.3
Msa1272480 MtrunA17_Chr4g0048581 21.447 387 263 13 207 574 47 411 3.63e-14 75.9
Msa1272480 MtrunA17_Chr3g0084491 25.876 371 230 15 207 560 57 399 5.14e-14 75.5
Msa1272480 MtrunA17_Chr2g0280801 24.350 423 251 18 208 592 45 436 6.14e-14 75.1
Msa1272480 MtrunA17_Chr2g0318811 26.260 377 220 16 207 560 38 379 8.66e-14 74.7
Msa1272480 MtrunA17_Chr1g0149381 27.851 377 205 20 206 564 57 384 3.57e-13 72.8
Msa1272480 MtrunA17_Chr7g0236201 23.641 423 253 20 207 592 44 433 4.76e-13 72.4
Msa1272480 MtrunA17_Chr4g0048691 25.610 410 211 13 207 568 61 424 5.48e-13 71.6
Msa1272480 MtrunA17_Chr2g0280691 25.964 389 233 18 195 560 27 383 5.60e-13 72.0
Msa1272480 MtrunA17_Chr7g0236161 23.641 423 253 20 207 592 44 433 6.12e-13 72.0
Msa1272480 MtrunA17_Chr7g0236121 23.641 423 253 20 207 592 44 433 6.25e-13 72.0
Msa1272480 MtrunA17_Chr4g0042361 23.947 380 235 15 207 560 74 425 8.48e-13 71.6
Msa1272480 MtrunA17_Chr8g0361431 26.582 316 194 14 207 511 52 340 9.59e-13 71.2
Msa1272480 MtrunA17_Chr3g0084431 23.360 381 222 16 207 560 44 381 1.24e-12 70.9
Msa1272480 MtrunA17_Chr2g0314611 25.538 372 217 18 206 563 55 380 1.39e-12 70.9
Msa1272480 MtrunA17_Chr2g0318841 23.925 372 235 14 207 560 38 379 1.39e-12 70.9
Msa1272480 MtrunA17_Chr2g0318831 38.849 139 69 6 207 338 41 170 1.48e-12 70.9
Msa1272480 MtrunA17_Chr2g0323241 32.203 177 107 6 193 359 27 200 1.86e-12 69.7
Msa1272480 MtrunA17_Chr2g0280791 24.074 378 242 13 214 569 47 401 2.34e-12 70.1
Msa1272480 MtrunA17_Chr3g0078531 25.459 381 230 16 207 558 52 407 2.41e-12 70.1
Msa1272480 MtrunA17_Chr7g0236641 22.596 416 262 19 207 592 42 427 3.32e-12 69.7
Msa1272480 MtrunA17_Chr2g0333091 25.547 411 235 19 206 594 50 411 3.78e-12 69.3
Msa1272480 MtrunA17_Chr3g0078541 25.722 381 228 18 207 558 52 406 4.16e-12 69.3
Msa1272480 MtrunA17_Chr1g0205551 29.932 147 89 6 289 430 1 138 5.56e-12 63.5
Msa1272480 MtrunA17_Chr4g0042341 23.467 375 246 12 207 560 39 393 3.49e-11 66.2
Msa1272480 MtrunA17_Chr3g0106161 30.556 144 85 2 421 564 90 218 3.68e-11 66.2
Msa1272480 MtrunA17_Chr3g0084451 23.947 380 224 16 207 560 44 384 3.91e-11 66.2
Msa1272480 MtrunA17_Chr2g0318171 25.337 371 222 18 204 564 53 378 5.49e-11 65.9
Msa1272480 MtrunA17_Chr8g0340071 29.139 151 96 4 207 348 44 192 7.08e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272480 AT5G24080.2 27.361 413 252 20 193 573 32 428 7.57e-25 110
Msa1272480 AT3G12000.1 26.702 382 237 13 198 559 40 398 1.69e-17 85.9
Msa1272480 AT1G11330.3 25.765 392 248 15 200 569 40 410 3.01e-16 82.8
Msa1272480 AT1G11330.2 25.765 392 248 15 200 569 40 410 3.51e-16 82.8
Msa1272480 AT1G11330.1 25.765 392 248 15 200 569 40 410 3.66e-16 82.8
Msa1272480 AT1G65790.3 24.603 378 234 11 202 560 39 384 1.66e-15 80.5
Msa1272480 AT1G65790.2 24.603 378 234 11 202 560 39 384 1.66e-15 80.5
Msa1272480 AT4G21390.2 25.061 407 250 15 194 574 32 409 1.72e-15 80.5
Msa1272480 AT1G65790.1 24.603 378 234 11 202 560 39 384 2.12e-15 80.5
Msa1272480 AT4G21390.1 25.061 407 250 15 194 574 32 409 2.42e-15 80.1
Msa1272480 AT1G11340.1 27.297 381 213 16 207 558 34 379 3.00e-15 79.7
Msa1272480 AT1G11340.3 27.297 381 213 16 207 558 102 447 3.08e-15 79.7
Msa1272480 AT1G11340.2 27.297 381 213 16 207 558 102 447 3.21e-15 79.7
Msa1272480 AT2G41890.1 27.346 373 221 15 208 563 41 380 4.30e-15 79.3
Msa1272480 AT1G34300.1 24.165 389 249 17 192 573 28 377 1.40e-14 77.8
Msa1272480 AT1G11300.2 24.623 398 246 16 197 569 32 400 1.59e-14 77.4
Msa1272480 AT1G11300.1 24.623 398 246 16 197 569 32 400 1.62e-14 77.4
Msa1272480 AT1G61360.1 23.971 413 246 18 197 574 19 398 2.14e-14 77.0
Msa1272480 AT1G11280.5 24.350 423 231 18 197 574 27 405 2.36e-14 76.6
Msa1272480 AT1G11280.2 24.350 423 231 18 197 574 27 405 2.78e-14 76.6
Msa1272480 AT1G11280.3 24.350 423 231 18 197 574 27 405 2.83e-14 76.6
Msa1272480 AT1G11280.1 24.350 423 231 18 197 574 37 415 3.33e-14 76.6
Msa1272480 AT1G11280.4 24.350 423 231 18 197 574 37 415 3.33e-14 76.6
Msa1272480 AT1G11303.1 24.505 404 251 17 197 574 32 407 1.33e-13 74.7
Msa1272480 AT1G11410.1 24.595 370 237 16 207 558 37 382 3.66e-13 73.2
Msa1272480 AT1G11410.3 24.595 370 237 16 207 558 13 358 3.83e-13 73.2
Msa1272480 AT1G11410.4 24.595 370 237 16 207 558 44 389 4.11e-13 73.2
Msa1272480 AT1G61380.1 23.155 393 249 17 207 574 35 399 2.69e-12 70.5
Msa1272480 AT1G61400.1 24.541 436 272 16 166 574 1 406 6.37e-12 69.3
Msa1272480 AT1G78850.1 23.607 377 247 15 217 570 52 410 7.54e-12 68.2
Msa1272480 AT1G61400.2 24.541 436 272 16 166 574 1 406 8.08e-12 68.9
Msa1272480 AT1G61550.1 23.775 408 249 18 196 574 17 391 8.40e-12 68.9
Msa1272480 AT4G21380.2 22.849 372 242 12 207 560 46 390 1.13e-11 68.2
Msa1272480 AT1G78860.1 24.118 340 228 14 242 570 90 410 1.58e-11 67.0
Msa1272480 AT1G11350.1 26.014 419 219 20 196 569 26 398 1.63e-11 67.8
Msa1272480 AT1G16905.1 23.647 351 205 14 242 570 89 398 2.15e-11 66.6
Msa1272480 AT1G65800.2 23.377 385 252 12 193 560 30 388 2.47e-11 67.0
Msa1272480 AT4G21380.1 22.849 372 242 12 207 560 46 390 2.84e-11 67.0
Msa1272480 AT1G65800.1 23.136 389 248 13 193 560 30 388 3.15e-11 67.0
Msa1272480 AT2G19130.1 25.000 400 232 19 207 574 38 401 5.00e-11 66.2
Msa1272480 AT4G03230.8 23.729 413 258 18 207 594 44 424 6.12e-11 65.9
Msa1272480 AT4G03230.4 23.729 413 258 18 207 594 44 424 8.61e-11 65.5
Msa1272480 AT4G03230.1 23.729 413 258 18 207 594 44 424 8.61e-11 65.5

Find 120 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTGGTTGCTTTCACCTTC+TGG 0.127016 8_3:-6148521 Msa1272480:CDS
TAACTTCCCCAAATGGTTTC+AGG 0.200357 8_3:-6148334 Msa1272480:CDS
CCCCAAATGGTTTCAGGTTA+TGG 0.203552 8_3:-6148328 Msa1272480:CDS
CTACACTGCTCTTCAGTAAA+AGG 0.260924 8_3:+6147510 None:intergenic
ACCAATGGCTATAGTACTTT+TGG 0.271121 8_3:+6150473 None:intergenic
AGTATAAGTACATATATTAA+AGG 0.280779 8_3:+6147779 None:intergenic
CCTTCTGGTGACTTTGCCTT+TGG 0.284286 8_3:-6148506 Msa1272480:CDS
TCAATCAGTGAGTAATGTTT+TGG 0.296727 8_3:+6147678 None:intergenic
CCTTCTCAAGTTGTGGATAA+AGG 0.297314 8_3:-6148179 Msa1272480:CDS
GAGACAGTCCTGCACCAAAA+AGG 0.306629 8_3:-6150293 Msa1272480:CDS
TCCATAACCTGAAACCATTT+GGG 0.319339 8_3:+6148327 None:intergenic
AAAGCTTTCTTCAAGGCTTA+AGG 0.324891 8_3:-6148153 Msa1272480:CDS
TGGAAGACTTTCAAGTTTCC+TGG 0.332297 8_3:-6150112 Msa1272480:intron
TATAATAGCTTCTGCACTTT+GGG 0.334674 8_3:-6147729 Msa1272480:CDS
TTCCATAACCTGAAACCATT+TGG 0.336453 8_3:+6148326 None:intergenic
CAGCTGCCATATGGATCATT+AGG 0.345935 8_3:+6147654 None:intergenic
GCACATCCTTGTATGAAATC+TGG 0.361226 8_3:+6147627 None:intergenic
TTCCATAGCATGTCACCATT+TGG 0.369317 8_3:+6150224 None:intergenic
CACAAACCAACACCTCTTCA+TGG 0.374974 8_3:-6150437 Msa1272480:CDS
CACAACTTGAGAAGGCAATA+AGG 0.378374 8_3:+6148187 None:intergenic
TTCACTCTTAGTTGAACTCT+TGG 0.381457 8_3:+6147827 None:intergenic
CAATTGGTCTTCGACAAATC+AGG 0.388787 8_3:-6147981 Msa1272480:CDS
TGACACCTTGTTGTCTTCTC+AGG 0.398124 8_3:-6150089 Msa1272480:CDS
AAGAAGTTACCACTCTCAAA+TGG 0.410332 8_3:-6147420 Msa1272480:CDS
GTGAAACTCATTGCCAATGA+TGG 0.410493 8_3:-6150263 Msa1272480:CDS
AGCCCGCACCAGCCCATCAT+TGG 0.412723 8_3:+6150250 None:intergenic
AAGGAAGAAAGCTTTCTTCA+AGG 0.414940 8_3:-6148160 Msa1272480:CDS
ATCCTCAAGCACAAAGTTGC+CGG 0.417463 8_3:+6148256 None:intergenic
ATCAAGTGCTGGAGCTCAAT+TGG 0.420184 8_3:-6147997 Msa1272480:CDS
AGAGTTGATGCAACTCTTAA+TGG 0.425621 8_3:-6147396 Msa1272480:CDS
TCAGGTTAGGAGATAGTTGT+TGG 0.432263 8_3:-6147446 Msa1272480:CDS
TTTCTGAGAAAACTGTTGTA+TGG 0.432600 8_3:-6148427 Msa1272480:CDS
CATTCTATTAATCTACCATC+TGG 0.438207 8_3:-6148068 Msa1272480:CDS
CTGGTGCGGGCTTCTCCAAA+TGG 0.438443 8_3:-6150239 Msa1272480:CDS
TTGGTGCTAACTTCCCCAAA+TGG 0.439852 8_3:-6148341 Msa1272480:CDS
TCTGGCTTGCAGCTGCCATA+TGG 0.441887 8_3:+6147645 None:intergenic
AGCTCCAGCACTTGATGTAC+TGG 0.446907 8_3:+6148004 None:intergenic
GAGCTCTTTCTGCAAAATGA+TGG 0.453488 8_3:-6150022 Msa1272480:CDS
GTGGAACTCACTGCCAATGA+TGG 0.454151 8_3:-6148365 Msa1272480:CDS
CTCCAAATGGTGACATGCTA+TGG 0.454917 8_3:-6150226 Msa1272480:CDS
GAATCAGTGAGTAGAGGAGA+AGG 0.455286 8_3:+6150523 None:intergenic
CCAAAAGTACTATAGCCATT+TGG 0.457102 8_3:-6148575 Msa1272480:intron
CTTATTGCCTTCTCAAGTTG+TGG 0.458043 8_3:-6148186 Msa1272480:CDS
AAAGAGACAAATTTCAGTAA+AGG 0.460569 8_3:-6150052 Msa1272480:CDS
AGAAATGTTTGCATACCAAA+TGG 0.463887 8_3:+6150344 None:intergenic
TCACTCTTAGTTGAACTCTT+GGG 0.472450 8_3:+6147828 None:intergenic
ATCAGTGAGTAGAGGAGAAG+GGG 0.473970 8_3:+6150525 None:intergenic
ATTGATCCTAATGATCCATA+TGG 0.477623 8_3:-6147660 Msa1272480:CDS
ACTGTTGTATGGTATGCTAA+TGG 0.478468 8_3:-6148416 Msa1272480:CDS
TTGCCAATGATGGGCTGGTG+CGG 0.480335 8_3:-6150253 Msa1272480:CDS
AAGGAGACAGATTTCAGTAA+AGG 0.482797 8_3:-6148134 Msa1272480:CDS
TACTTTGAAAGTAATACTGT+TGG 0.483409 8_3:-6148029 Msa1272480:CDS
AATCAGTGAGTAGAGGAGAA+GGG 0.485968 8_3:+6150524 None:intergenic
ATATAATAGCTTCTGCACTT+TGG 0.487312 8_3:-6147730 Msa1272480:CDS
GTATAAGTACATATATTAAA+GGG 0.488197 8_3:+6147780 None:intergenic
TCACACTTTCAAGAAAGCCT+TGG 0.489630 8_3:+6147371 None:intergenic
TGCCAATGATGGGCTGGTGC+GGG 0.489933 8_3:-6150252 Msa1272480:CDS
CCTTTATCCACAACTTGAGA+AGG 0.492964 8_3:+6148179 None:intergenic
AAGCAACCAGGGAGAGGTGC+TGG 0.494842 8_3:+6148532 None:intergenic
AGTTAGCACCAACCCATCAT+TGG 0.498106 8_3:+6148352 None:intergenic
GAGGAGAAGGGGAAGTAGAG+AGG 0.502798 8_3:+6150536 None:intergenic
GCAGTGTAGGAAATCTTGTA+TGG 0.504417 8_3:-6147496 Msa1272480:CDS
TGTCTTCTCAGGTTGTTGAA+AGG 0.505216 8_3:-6150078 Msa1272480:CDS
GGATGATTGTTTGTGTTCTG+TGG 0.510059 8_3:-6147475 Msa1272480:CDS
ACCAGAAGGTGAAAGCAACC+AGG 0.514206 8_3:+6148520 None:intergenic
AGTGCAGGTAGTGGTGTTTG+TGG 0.518931 8_3:-6147753 Msa1272480:CDS
AGAAGTTACCACTCTCAAAT+GGG 0.519368 8_3:-6147419 Msa1272480:CDS
CTATGGAATACTGAGGGACT+CGG 0.522040 8_3:-6150209 Msa1272480:CDS
TATCAGATTATGTGCTTCAA+AGG 0.523234 8_3:-6147533 Msa1272480:CDS
AGACAAATTTCAGTAAAGGA+AGG 0.535382 8_3:-6150048 Msa1272480:CDS
GCAGTAAAAGAATCACCAAA+TGG 0.536164 8_3:+6148560 None:intergenic
TGAAGCACATAATCTGATAG+AGG 0.536988 8_3:+6147537 None:intergenic
CACAAACCAGCACCTCTCCC+TGG 0.537716 8_3:-6148538 Msa1272480:CDS
GGCAACTTTGTGCTTGAGGA+TGG 0.540807 8_3:-6148254 Msa1272480:CDS
AGACAGATTTCAGTAAAGGA+AGG 0.543432 8_3:-6148130 Msa1272480:CDS
ACCAAAAGTACTATAGCCAT+TGG 0.547841 8_3:-6150474 Msa1272480:CDS
GGATCCAGTACATCAAGTGC+TGG 0.549542 8_3:-6148008 Msa1272480:CDS
GGAGACAGTCCTGCACCAAA+AGG 0.549672 8_3:-6148395 Msa1272480:CDS
TGCAAGCCAGATTTCATACA+AGG 0.550125 8_3:-6147633 Msa1272480:CDS
GGTTTGAGATACAACACTGA+TGG 0.550298 8_3:+6150494 None:intergenic
ACTCATTGCCAATGATGGGC+TGG 0.554094 8_3:-6150258 Msa1272480:CDS
AGGTGAAAGCAACCAGGGAG+AGG 0.559710 8_3:+6148526 None:intergenic
TGCACCAAAAGGATCAAAAG+TGG 0.563251 8_3:-6148384 Msa1272480:CDS
TGCAACTCTTAATGGTGCCA+AGG 0.565874 8_3:-6147388 Msa1272480:CDS
TATACTGTTAGTGCAGGTAG+TGG 0.565930 8_3:-6147762 Msa1272480:CDS
AAAAGATTAGTGTCTTTGAG+TGG 0.569176 8_3:+6148476 None:intergenic
AAACAACCATGAAGAGGTGT+TGG 0.569836 8_3:+6150431 None:intergenic
ATGGTAAATTCAACAGTCTG+TGG 0.569947 8_3:-6148235 Msa1272480:CDS
CACCGGCAACTTTGTGCTTG+AGG 0.577386 8_3:-6148258 Msa1272480:CDS
TGTACTTATACTGTTAGTGC+AGG 0.578443 8_3:-6147768 Msa1272480:CDS
TTCAGGTTATGGAATACTGA+AGG 0.580702 8_3:-6148317 Msa1272480:CDS
CTCGGTGATAGAGTTTCTCA+TGG 0.582184 8_3:-6150191 Msa1272480:CDS
CTATGAAAGTGTAAAACTGT+GGG 0.582617 8_3:-6149939 Msa1272480:CDS
GAAGACAACAAGGTGTCACC+AGG 0.583450 8_3:+6150094 None:intergenic
ATTGAAGAATCAGTGAGTAG+AGG 0.587377 8_3:+6150517 None:intergenic
CGCGGTGTGTTGAATGACAC+CGG 0.587935 8_3:-6148275 Msa1272480:CDS
TGGTAAATTCAACAGTCTGT+GGG 0.591832 8_3:-6148234 Msa1272480:CDS
AATTGGTCTTCGACAAATCA+GGG 0.593181 8_3:-6147980 Msa1272480:CDS
TGAAACTCATTGCCAATGAT+GGG 0.597309 8_3:-6150262 Msa1272480:CDS
GAAGGCAATAAGGTGTCACT+AGG 0.602021 8_3:+6148197 None:intergenic
ACTCACTGCCAATGATGGGT+TGG 0.610259 8_3:-6148360 Msa1272480:CDS
CATGGTGTGTTCAATGACAC+AGG 0.612301 8_3:-6150173 Msa1272480:CDS
AAGAGTTCAACTAAGAGTGA+AGG 0.616078 8_3:-6147825 Msa1272480:CDS
ACTATGAAAGTGTAAAACTG+TGG 0.618208 8_3:-6149940 Msa1272480:CDS
GTTCAACTAAGAGTGAAGGT+TGG 0.619862 8_3:-6147821 Msa1272480:CDS
CTCAATGTTAAAGTTTCTCG+CGG 0.620103 8_3:-6148293 Msa1272480:CDS
TGCAGTAAAAGAATCACCAA+TGG 0.627896 8_3:+6150458 None:intergenic
TGGAACTCACTGCCAATGAT+GGG 0.629211 8_3:-6148364 Msa1272480:CDS
CCAAAGGCAAAGTCACCAGA+AGG 0.636933 8_3:+6148506 None:intergenic
AGGTGAAAACAACCATGAAG+AGG 0.638776 8_3:+6150425 None:intergenic
CCATAACCTGAAACCATTTG+GGG 0.645472 8_3:+6148328 None:intergenic
TTTGAGTGGAAGAAAACCAA+AGG 0.654690 8_3:+6148490 None:intergenic
CCAGAAGGTGAAAGCAACCA+GGG 0.656880 8_3:+6148521 None:intergenic
TGCTCTAAGATAAAATTGTG+TGG 0.657315 8_3:+6147890 None:intergenic
TCAACTCTCCCATTTGAGAG+TGG 0.665246 8_3:+6147411 None:intergenic
CCTAACGAAAAGTCACCAGA+AGG 0.667148 8_3:+6150405 None:intergenic
GACATGCTATGGAATACTGA+GGG 0.685745 8_3:-6150215 Msa1272480:CDS
AACAACCTGAGAAGACAACA+AGG 0.709761 8_3:+6150084 None:intergenic
AAAGGGCTTAGACGATACTG+TGG 0.721635 8_3:+6147797 None:intergenic
TGACATGCTATGGAATACTG+AGG 0.750915 8_3:-6150216 Msa1272480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATCTATAAAATCATA+TGG - chr8_3:6149156-6149175 Msa1272480:intron 10.0%
!! CAAAACTAAAATAACATATA+TGG + chr8_3:6148379-6148398 None:intergenic 15.0%
!! AAAAATAATAAACATATAGC+TGG - chr8_3:6148935-6148954 Msa1272480:intron 15.0%
!!! CTTTTATTTTCTATGAAAAA+TGG - chr8_3:6149027-6149046 Msa1272480:intron 15.0%
!! GTATAAGTACATATATTAAA+GGG + chr8_3:6150137-6150156 None:intergenic 15.0%
!! AGTATAAGTACATATATTAA+AGG + chr8_3:6150138-6150157 None:intergenic 15.0%
!!! TTTTCATTAACATAACGAAA+TGG + chr8_3:6147946-6147965 None:intergenic 20.0%
!!! TGATTATTGAATATGTTTTC+AGG + chr8_3:6148645-6148664 None:intergenic 20.0%
!!! ATCAACTTTTTAACTATCTT+AGG + chr8_3:6148731-6148750 None:intergenic 20.0%
!! ATTAGATAAATATTCCTGTT+TGG - chr8_3:6148880-6148899 Msa1272480:intron 20.0%
!!! ATACATTACAATTTTGACAT+AGG + chr8_3:6149002-6149021 None:intergenic 20.0%
!! TGTTTCCTATAAAAATCATA+TGG - chr8_3:6149221-6149240 Msa1272480:intron 20.0%
!!! TTGATCCATATGATTTTTAT+AGG + chr8_3:6149229-6149248 None:intergenic 20.0%
!!! ATCTTTTATTGCTTTCTATT+TGG - chr8_3:6149454-6149473 Msa1272480:intron 20.0%
!!! TGTTTTTTTTGCTTTCCATT+TGG - chr8_3:6147555-6147574 Msa1272480:CDS 25.0%
! TTCTGATAAAAAATGTTCTG+CGG - chr8_3:6147589-6147608 Msa1272480:CDS 25.0%
! AAAGAGACAAATTTCAGTAA+AGG - chr8_3:6147862-6147881 Msa1272480:CDS 25.0%
! TGGTGATAATATCTGTAAAA+GGG + chr8_3:6148359-6148378 None:intergenic 25.0%
! ATGGTGATAATATCTGTAAA+AGG + chr8_3:6148360-6148379 None:intergenic 25.0%
! TAACAGACAAAATTAGTGAA+CGG - chr8_3:6148474-6148493 Msa1272480:CDS 25.0%
!!! TCTTAGGTTATAGTTTTACA+GGG + chr8_3:6148715-6148734 None:intergenic 25.0%
!!! ATCTTAGGTTATAGTTTTAC+AGG + chr8_3:6148716-6148735 None:intergenic 25.0%
!!! AAAGTTGATAACAAAAAGAG+AGG - chr8_3:6148742-6148761 Msa1272480:intron 25.0%
! ATTGATGTTAACATGAGTAT+TGG + chr8_3:6148819-6148838 None:intergenic 25.0%
!! ACTAAGTGCTTTAAATTTGA+TGG - chr8_3:6149126-6149145 Msa1272480:intron 25.0%
!!! AAATCACTAGTCTTTCAATT+TGG + chr8_3:6149183-6149202 None:intergenic 25.0%
!! ACAGTTTTCTCAGAAATTTT+GGG + chr8_3:6149483-6149502 None:intergenic 25.0%
!! AACAGTTTTCTCAGAAATTT+TGG + chr8_3:6149484-6149503 None:intergenic 25.0%
!! TTTTCATTAACATAACCAGA+TGG + chr8_3:6149864-6149883 None:intergenic 25.0%
!! TACTTTGAAAGTAATACTGT+TGG - chr8_3:6149885-6149904 Msa1272480:intron 25.0%
!! AGATCATTTCTCTTTTTACT+TGG + chr8_3:6150323-6150342 None:intergenic 25.0%
AAAAACATCGTATCTTCTAG+TGG + chr8_3:6147542-6147561 None:intergenic 30.0%
AGAAATGTTTGCATACCAAA+TGG + chr8_3:6147573-6147592 None:intergenic 30.0%
AGACAAATTTCAGTAAAGGA+AGG - chr8_3:6147866-6147885 Msa1272480:CDS 30.0%
! ACTATGAAAGTGTAAAACTG+TGG - chr8_3:6147974-6147993 Msa1272480:CDS 30.0%
! CTATGAAAGTGTAAAACTGT+GGG - chr8_3:6147975-6147994 Msa1272480:CDS 30.0%
!! AATTAGTCTTTGACAGATCA+GGG - chr8_3:6148024-6148043 Msa1272480:CDS 30.0%
GAACATGAAATAACATGTGT+TGG + chr8_3:6148136-6148155 None:intergenic 30.0%
ACATAGATAAGATACGGAAA+CGG + chr8_3:6148190-6148209 None:intergenic 30.0%
TTTCCGTATCTTATCTATGT+CGG - chr8_3:6148190-6148209 Msa1272480:CDS 30.0%
! CTTGAGAAGAGTATATAAAG+AGG - chr8_3:6148256-6148275 Msa1272480:CDS 30.0%
! AATTACCTATTTTGTGTGCT+GGG + chr8_3:6148537-6148556 None:intergenic 30.0%
! TAATTACCTATTTTGTGTGC+TGG + chr8_3:6148538-6148557 None:intergenic 30.0%
AGCACACAAAATAGGTAATT+AGG - chr8_3:6148537-6148556 Msa1272480:CDS 30.0%
AAGAGAGGAATTTGTAGATA+TGG - chr8_3:6148757-6148776 Msa1272480:intron 30.0%
TAGATATGGTTACCTGAATT+CGG - chr8_3:6148771-6148790 Msa1272480:intron 30.0%
TACGAATTATAGTTCCAAAC+AGG + chr8_3:6148897-6148916 None:intergenic 30.0%
CTAAAAATCAACACACAAGT+TGG + chr8_3:6149088-6149107 None:intergenic 30.0%
! TGAAAGACTAGTGATTTTGA+TGG - chr8_3:6149186-6149205 Msa1272480:intron 30.0%
AGGAAGACATGTTTATAATG+TGG + chr8_3:6149259-6149278 None:intergenic 30.0%
AAAAGATTAGTGTCTTTGAG+TGG + chr8_3:6149441-6149460 None:intergenic 30.0%
! TTTCTGAGAAAACTGTTGTA+TGG - chr8_3:6149487-6149506 Msa1272480:intron 30.0%
!!! GAACTTGTTTTACAAAGTGA+TGG - chr8_3:6149810-6149829 Msa1272480:intron 30.0%
CATTCTATTAATCTACCATC+TGG - chr8_3:6149846-6149865 Msa1272480:intron 30.0%
!! TGCTCTAAGATAAAATTGTG+TGG + chr8_3:6150027-6150046 None:intergenic 30.0%
! AGAGCAACTCTTAATTTTGA+TGG - chr8_3:6150041-6150060 Msa1272480:CDS 30.0%
ATATAATAGCTTCTGCACTT+TGG - chr8_3:6150184-6150203 Msa1272480:CDS 30.0%
TATAATAGCTTCTGCACTTT+GGG - chr8_3:6150185-6150204 Msa1272480:CDS 30.0%
! TCAATCAGTGAGTAATGTTT+TGG + chr8_3:6150239-6150258 None:intergenic 30.0%
ATTGATCCTAATGATCCATA+TGG - chr8_3:6150254-6150273 Msa1272480:CDS 30.0%
!!! AGATTTTGATTGACACTGAT+TGG - chr8_3:6150354-6150373 Msa1272480:CDS 30.0%
TATCAGATTATGTGCTTCAA+AGG - chr8_3:6150381-6150400 Msa1272480:CDS 30.0%
ATTGAAGAATCAGTGAGTAG+AGG + chr8_3:6147400-6147419 None:intergenic 35.0%
!! ACCAAAAGTACTATAGCCAT+TGG - chr8_3:6147440-6147459 Msa1272480:CDS 35.0%
! ACCAATGGCTATAGTACTTT+TGG + chr8_3:6147444-6147463 None:intergenic 35.0%
TGCAGTAAAAGAATCACCAA+TGG + chr8_3:6147459-6147478 None:intergenic 35.0%
!! GTTTCACTTTTGACCCTTTT+TGG + chr8_3:6147638-6147657 None:intergenic 35.0%
TGAAACTCATTGCCAATGAT+GGG - chr8_3:6147652-6147671 Msa1272480:CDS 35.0%
!! CAATTAGTCTTTGACAGATC+AGG - chr8_3:6148023-6148042 Msa1272480:CDS 35.0%
!! ATCAGGGTACTTGTATGTTT+TGG - chr8_3:6148040-6148059 Msa1272480:CDS 35.0%
!! TCAGGGTACTTGTATGTTTT+GGG - chr8_3:6148041-6148060 Msa1272480:CDS 35.0%
TATAACATGTGTCAACCTGT+CGG - chr8_3:6148162-6148181 Msa1272480:CDS 35.0%
ACACCGACATAGATAAGATA+CGG + chr8_3:6148196-6148215 None:intergenic 35.0%
TCTTATCTATGTCGGTGTAT+TGG - chr8_3:6148198-6148217 Msa1272480:CDS 35.0%
CTTATCTATGTCGGTGTATT+GGG - chr8_3:6148199-6148218 Msa1272480:CDS 35.0%
CTAACTCAACCTTACAAAAC+CGG + chr8_3:6148303-6148322 None:intergenic 35.0%
AACATTGAGATGATTCGATG+TGG + chr8_3:6148424-6148443 None:intergenic 35.0%
CGAAAACTATAAGTTTACGC+GGG + chr8_3:6148512-6148531 None:intergenic 35.0%
GCGAAAACTATAAGTTTACG+CGG + chr8_3:6148513-6148532 None:intergenic 35.0%
TAACATTGCTAGAGTAACAG+TGG + chr8_3:6148676-6148695 None:intergenic 35.0%
!!! CTTCTAAAGTGGACTTTTCA+GGG + chr8_3:6148970-6148989 None:intergenic 35.0%
!!! TCTTCTAAAGTGGACTTTTC+AGG + chr8_3:6148971-6148990 None:intergenic 35.0%
! CCAAATGGCTATAGTACTTT+TGG + chr8_3:6149342-6149361 None:intergenic 35.0%
!! CCAAAAGTACTATAGCCATT+TGG - chr8_3:6147441-6147460 Msa1272480:CDS 35.0%
GCAGTAAAAGAATCACCAAA+TGG + chr8_3:6149357-6149376 None:intergenic 35.0%
TTTGAGTGGAAGAAAACCAA+AGG + chr8_3:6149427-6149446 None:intergenic 35.0%
ACTGTTGTATGGTATGCTAA+TGG - chr8_3:6149498-6149517 Msa1272480:intron 35.0%
!! AGTTCCACTTTTGATCCTTT+TGG + chr8_3:6149537-6149556 None:intergenic 35.0%
TCCATAACCTGAAACCATTT+GGG + chr8_3:6149590-6149609 None:intergenic 35.0%
TTCCATAACCTGAAACCATT+TGG + chr8_3:6149591-6149610 None:intergenic 35.0%
! TTCAGGTTATGGAATACTGA+AGG - chr8_3:6149597-6149616 Msa1272480:intron 35.0%
CTCAATGTTAAAGTTTCTCG+CGG - chr8_3:6149621-6149640 Msa1272480:intron 35.0%
ATGGTAAATTCAACAGTCTG+TGG - chr8_3:6149679-6149698 Msa1272480:intron 35.0%
TGGTAAATTCAACAGTCTGT+GGG - chr8_3:6149680-6149699 Msa1272480:intron 35.0%
AAGGAAGAAAGCTTTCTTCA+AGG - chr8_3:6149754-6149773 Msa1272480:intron 35.0%
AAAGCTTTCTTCAAGGCTTA+AGG - chr8_3:6149761-6149780 Msa1272480:intron 35.0%
AAGGAGACAGATTTCAGTAA+AGG - chr8_3:6149780-6149799 Msa1272480:intron 35.0%
AGACAGATTTCAGTAAAGGA+AGG - chr8_3:6149784-6149803 Msa1272480:intron 35.0%
!! AATTGGTCTTCGACAAATCA+GGG - chr8_3:6149934-6149953 Msa1272480:CDS 35.0%
!! TCAGGGTACTTGTATGTTTT+AGG - chr8_3:6148041-6148060 Msa1272480:CDS 35.0%
TCACTCTTAGTTGAACTCTT+GGG + chr8_3:6150089-6150108 None:intergenic 35.0%
TTCACTCTTAGTTGAACTCT+TGG + chr8_3:6150090-6150109 None:intergenic 35.0%
AAGAGTTCAACTAAGAGTGA+AGG - chr8_3:6150089-6150108 Msa1272480:CDS 35.0%
TGTACTTATACTGTTAGTGC+AGG - chr8_3:6150146-6150165 Msa1272480:intron 35.0%
!! TGTTTTGGACACTGACATTT+TGG + chr8_3:6150224-6150243 None:intergenic 35.0%
TGAAGCACATAATCTGATAG+AGG + chr8_3:6150380-6150399 None:intergenic 35.0%
AAGAAGTTACCACTCTCAAA+TGG - chr8_3:6150494-6150513 Msa1272480:CDS 35.0%
AGAAGTTACCACTCTCAAAT+GGG - chr8_3:6150495-6150514 Msa1272480:CDS 35.0%
!! AGAGTTGATGCAACTCTTAA+TGG - chr8_3:6150518-6150537 Msa1272480:CDS 35.0%
AATCAGTGAGTAGAGGAGAA+GGG + chr8_3:6147393-6147412 None:intergenic 40.0%
! GGTTTGAGATACAACACTGA+TGG + chr8_3:6147423-6147442 None:intergenic 40.0%
! AAACAACCATGAAGAGGTGT+TGG + chr8_3:6147486-6147505 None:intergenic 40.0%
AGGTGAAAACAACCATGAAG+AGG + chr8_3:6147492-6147511 None:intergenic 40.0%
!! TCATGGTTGTTTTCACCTTC+TGG - chr8_3:6147494-6147513 Msa1272480:CDS 40.0%
GTGAAACTCATTGCCAATGA+TGG - chr8_3:6147651-6147670 Msa1272480:CDS 40.0%
TTCCATAGCATGTCACCATT+TGG + chr8_3:6147693-6147712 None:intergenic 40.0%
TGACATGCTATGGAATACTG+AGG - chr8_3:6147698-6147717 Msa1272480:CDS 40.0%
GACATGCTATGGAATACTGA+GGG - chr8_3:6147699-6147718 Msa1272480:CDS 40.0%
TGGTAAACTCTTACAGTCGT+TGG - chr8_3:6147782-6147801 Msa1272480:CDS 40.0%
!! TGGAAGACTTTCAAGTTTCC+TGG - chr8_3:6147802-6147821 Msa1272480:CDS 40.0%
AACAACCTGAGAAGACAACA+AGG + chr8_3:6147833-6147852 None:intergenic 40.0%
! TGTCTTCTCAGGTTGTTGAA+AGG - chr8_3:6147836-6147855 Msa1272480:CDS 40.0%
GAGCTCTTTCTGCAAAATGA+TGG - chr8_3:6147892-6147911 Msa1272480:CDS 40.0%
! AACATGTGTTGGTGTCTGTT+GGG + chr8_3:6148125-6148144 None:intergenic 40.0%
! TAACATGTGTTGGTGTCTGT+TGG + chr8_3:6148126-6148145 None:intergenic 40.0%
! GAGTCTTATCTATCCGATGT+GGG + chr8_3:6148237-6148256 None:intergenic 40.0%
! AGAGTCTTATCTATCCGATG+TGG + chr8_3:6148238-6148257 None:intergenic 40.0%
!! CGGTTTTGTAAGGTTGAGTT+AGG - chr8_3:6148301-6148320 Msa1272480:CDS 40.0%
ACTATAAGTTTACGCGGGAA+AGG + chr8_3:6148507-6148526 None:intergenic 40.0%
TGGTTACCTGAATTCGGTAT+CGG - chr8_3:6148777-6148796 Msa1272480:intron 40.0%
AACTTACCGATACCGAATTC+AGG + chr8_3:6148786-6148805 None:intergenic 40.0%
! GGACTTGTGTTCTTCTAAAG+TGG + chr8_3:6148981-6149000 None:intergenic 40.0%
! CACACAAGTTGGCTTAACTT+TGG + chr8_3:6149077-6149096 None:intergenic 40.0%
ATCAGTGAGTAGAGGAGAAA+GGG + chr8_3:6149290-6149309 None:intergenic 40.0%
AATCAGTGAGTAGAGGAGAA+AGG + chr8_3:6147393-6147412 None:intergenic 40.0%
ATTGCAGAATCAGTGAGTAG+AGG + chr8_3:6149298-6149317 None:intergenic 40.0%
GGTTTGAGCTACAACACATA+TGG + chr8_3:6149321-6149340 None:intergenic 40.0%
!! ACTTTTGATCCTTTTGGTGC+AGG + chr8_3:6149531-6149550 None:intergenic 40.0%
TGCACCAAAAGGATCAAAAG+TGG - chr8_3:6149530-6149549 Msa1272480:intron 40.0%
TAACTTCCCCAAATGGTTTC+AGG - chr8_3:6149580-6149599 Msa1272480:intron 40.0%
CCATAACCTGAAACCATTTG+GGG + chr8_3:6149589-6149608 None:intergenic 40.0%
CACAACTTGAGAAGGCAATA+AGG + chr8_3:6149730-6149749 None:intergenic 40.0%
! CTTATTGCCTTCTCAAGTTG+TGG - chr8_3:6149728-6149747 Msa1272480:intron 40.0%
CCTTTATCCACAACTTGAGA+AGG + chr8_3:6149738-6149757 None:intergenic 40.0%
! CCTTCTCAAGTTGTGGATAA+AGG - chr8_3:6149735-6149754 Msa1272480:intron 40.0%
!! CAATTGGTCTTCGACAAATC+AGG - chr8_3:6149933-6149952 Msa1272480:intron 40.0%
GTTCAACTAAGAGTGAAGGT+TGG - chr8_3:6150093-6150112 Msa1272480:CDS 40.0%
TATACTGTTAGTGCAGGTAG+TGG - chr8_3:6150152-6150171 Msa1272480:intron 40.0%
TGCAAGCCAGATTTCATACA+AGG - chr8_3:6150281-6150300 Msa1272480:CDS 40.0%
GCACATCCTTGTATGAAATC+TGG + chr8_3:6150290-6150309 None:intergenic 40.0%
CTACACTGCTCTTCAGTAAA+AGG + chr8_3:6150407-6150426 None:intergenic 40.0%
! CTTTTACTGAAGAGCAGTGT+AGG - chr8_3:6150405-6150424 Msa1272480:CDS 40.0%
GCAGTGTAGGAAATCTTGTA+TGG - chr8_3:6150418-6150437 Msa1272480:CDS 40.0%
GGATGATTGTTTGTGTTCTG+TGG - chr8_3:6150439-6150458 Msa1272480:CDS 40.0%
!! TGTGTTCTGTGGCTATTTTC+AGG - chr8_3:6150450-6150469 Msa1272480:CDS 40.0%
!!! TCTGTGGCTATTTTCAGGTT+AGG - chr8_3:6150455-6150474 Msa1272480:CDS 40.0%
TCAGGTTAGGAGATAGTTGT+TGG - chr8_3:6150468-6150487 Msa1272480:CDS 40.0%
TCACACTTTCAAGAAAGCCT+TGG + chr8_3:6150546-6150565 None:intergenic 40.0%
ATCAGTGAGTAGAGGAGAAG+GGG + chr8_3:6147392-6147411 None:intergenic 45.0%
GAATCAGTGAGTAGAGGAGA+AGG + chr8_3:6147394-6147413 None:intergenic 45.0%
CACAAACCAACACCTCTTCA+TGG - chr8_3:6147477-6147496 Msa1272480:CDS 45.0%
CCTAACGAAAAGTCACCAGA+AGG + chr8_3:6147512-6147531 None:intergenic 45.0%
! CCTTCTGGTGACTTTTCGTT+AGG - chr8_3:6147509-6147528 Msa1272480:CDS 45.0%
AGACAGTCCTGCACCAAAAA+GGG - chr8_3:6147622-6147641 Msa1272480:CDS 45.0%
!! CTTTTGACCCTTTTTGGTGC+AGG + chr8_3:6147632-6147651 None:intergenic 45.0%
CTCCAAATGGTGACATGCTA+TGG - chr8_3:6147688-6147707 Msa1272480:CDS 45.0%
CTATGGAATACTGAGGGACT+CGG - chr8_3:6147705-6147724 Msa1272480:CDS 45.0%
CTCGGTGATAGAGTTTCTCA+TGG - chr8_3:6147723-6147742 Msa1272480:CDS 45.0%
CATGGTGTGTTCAATGACAC+AGG - chr8_3:6147741-6147760 Msa1272480:CDS 45.0%
GGAAACTCTGTACTTGACGA+TGG - chr8_3:6147762-6147781 Msa1272480:CDS 45.0%
! TGACACCTTGTTGTCTTCTC+AGG - chr8_3:6147825-6147844 Msa1272480:CDS 45.0%
AGTTCCAGCACTTGATGTAC+TGG + chr8_3:6148003-6148022 None:intergenic 45.0%
! ATCCCTTAGATCAGAGGCAT+CGG + chr8_3:6148077-6148096 None:intergenic 45.0%
ATCTAAGGGATGTCTGGTGT+CGG - chr8_3:6148086-6148105 Msa1272480:CDS 45.0%
! ACATGTGTTGGTGTCTGTTG+GGG + chr8_3:6148124-6148143 None:intergenic 45.0%
GAAAAACCCAAGTCCCACAT+CGG - chr8_3:6148221-6148240 Msa1272480:CDS 45.0%
ATCTATCCGATGTGGGACTT+GGG + chr8_3:6148230-6148249 None:intergenic 45.0%
TATCTATCCGATGTGGGACT+TGG + chr8_3:6148231-6148250 None:intergenic 45.0%
ACAATCCTCACCTTACAAGC+CGG - chr8_3:6148281-6148300 Msa1272480:CDS 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr8_3:6148294-6148313 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr8_3:6148291-6148310 Msa1272480:CDS 45.0%
AGAAACTCATCCTGTCGTCT+TGG + chr8_3:6148329-6148348 None:intergenic 45.0%
AAGACGACAGGATGAGTTTC+TGG - chr8_3:6148328-6148347 Msa1272480:CDS 45.0%
GCTATGTATGCAGTGCTTCA+TGG + chr8_3:6148563-6148582 None:intergenic 45.0%
TGGAACTCACTGCCAATGAT+GGG - chr8_3:6149550-6149569 Msa1272480:intron 45.0%
AGTTAGCACCAACCCATCAT+TGG + chr8_3:6149565-6149584 None:intergenic 45.0%
!! TTGGTGCTAACTTCCCCAAA+TGG - chr8_3:6149573-6149592 Msa1272480:intron 45.0%
!! CCCCAAATGGTTTCAGGTTA+TGG - chr8_3:6149586-6149605 Msa1272480:intron 45.0%
ATCCTCAAGCACAAAGTTGC+CGG + chr8_3:6149661-6149680 None:intergenic 45.0%
!! GAAGGCAATAAGGTGTCACT+AGG + chr8_3:6149720-6149739 None:intergenic 45.0%
!! ATCAAGTGCTGGAGCTCAAT+TGG - chr8_3:6149917-6149936 Msa1272480:intron 45.0%
AAAGGGCTTAGACGATACTG+TGG + chr8_3:6150120-6150139 None:intergenic 45.0%
CAGCTGCCATATGGATCATT+AGG + chr8_3:6150263-6150282 None:intergenic 45.0%
TCAACTCTCCCATTTGAGAG+TGG + chr8_3:6150506-6150525 None:intergenic 45.0%
! TGCAACTCTTAATGGTGCCA+AGG - chr8_3:6150526-6150545 Msa1272480:CDS 45.0%
GAGACAGTCCTGCACCAAAA+AGG - chr8_3:6147621-6147640 Msa1272480:CDS 50.0%
!! ACTCATTGCCAATGATGGGC+TGG - chr8_3:6147656-6147675 Msa1272480:CDS 50.0%
! GAAGACAACAAGGTGTCACC+AGG + chr8_3:6147823-6147842 None:intergenic 50.0%
GGATCCAGTACATCAAGTGC+TGG - chr8_3:6147996-6148015 Msa1272480:CDS 50.0%
CACCGATGCCTCTGATCTAA+GGG - chr8_3:6148072-6148091 Msa1272480:CDS 50.0%
CCAGACATCCCTTAGATCAG+AGG + chr8_3:6148083-6148102 None:intergenic 50.0%
CCTCTGATCTAAGGGATGTC+TGG - chr8_3:6148080-6148099 Msa1272480:CDS 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr8_3:6148289-6148308 None:intergenic 50.0%
TCGCACCCAGCACACAAAAT+AGG - chr8_3:6148529-6148548 Msa1272480:CDS 50.0%
GAGGAGAAAGGGAAGCAAAG+AGG + chr8_3:6149279-6149298 None:intergenic 50.0%
CCAGAAGGTGAAAGCAACCA+GGG + chr8_3:6149396-6149415 None:intergenic 50.0%
ACCAGAAGGTGAAAGCAACC+AGG + chr8_3:6149397-6149416 None:intergenic 50.0%
CCAAAGGCAAAGTCACCAGA+AGG + chr8_3:6149411-6149430 None:intergenic 50.0%
CCTTCTGGTGACTTTGCCTT+TGG - chr8_3:6149408-6149427 Msa1272480:intron 50.0%
GTGGAACTCACTGCCAATGA+TGG - chr8_3:6149549-6149568 Msa1272480:intron 50.0%
!! ACTCACTGCCAATGATGGGT+TGG - chr8_3:6149554-6149573 Msa1272480:intron 50.0%
GGCAACTTTGTGCTTGAGGA+TGG - chr8_3:6149660-6149679 Msa1272480:intron 50.0%
GGATCCAGTACATCAAGTGC+TGG - chr8_3:6147996-6148015 Msa1272480:CDS 50.0%
AGCTCCAGCACTTGATGTAC+TGG + chr8_3:6149913-6149932 None:intergenic 50.0%
! AGTGCAGGTAGTGGTGTTTG+TGG - chr8_3:6150161-6150180 Msa1272480:intron 50.0%
GAGGAGAAGGGGAAGTAGAG+AGG + chr8_3:6147381-6147400 None:intergenic 55.0%
!! TTGCCAATGATGGGCTGGTG+CGG - chr8_3:6147661-6147680 Msa1272480:CDS 55.0%
! GCACCGATGCCTCTGATCTA+AGG - chr8_3:6148071-6148090 Msa1272480:CDS 55.0%
GAGTTAGGCTCCAAGACGAC+AGG - chr8_3:6148316-6148335 Msa1272480:CDS 55.0%
AGGTGAAAGCAACCAGGGAG+AGG + chr8_3:6149391-6149410 None:intergenic 55.0%
! CCCTGGTTGCTTTCACCTTC+TGG - chr8_3:6149393-6149412 Msa1272480:intron 55.0%
GGAGACAGTCCTGCACCAAA+AGG - chr8_3:6149519-6149538 Msa1272480:intron 55.0%
CGCGGTGTGTTGAATGACAC+CGG - chr8_3:6149639-6149658 Msa1272480:intron 55.0%
CACCGGCAACTTTGTGCTTG+AGG - chr8_3:6149656-6149675 Msa1272480:intron 55.0%
! TCTGGCTTGCAGCTGCCATA+TGG + chr8_3:6150272-6150291 None:intergenic 55.0%
!! TGCCAATGATGGGCTGGTGC+GGG - chr8_3:6147662-6147681 Msa1272480:CDS 60.0%
CTGGTGCGGGCTTCTCCAAA+TGG - chr8_3:6147675-6147694 Msa1272480:CDS 60.0%
!! GATACGGAAACGGCACCGAC+AGG + chr8_3:6148180-6148199 None:intergenic 60.0%
CACAAACCAGCACCTCTCCC+TGG - chr8_3:6149376-6149395 Msa1272480:intron 60.0%
! AAGCAACCAGGGAGAGGTGC+TGG + chr8_3:6149385-6149404 None:intergenic 60.0%
AGCCCGCACCAGCCCATCAT+TGG + chr8_3:6147667-6147686 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 6147371 6150565 6147371 ID=Msa1272480;Name=Msa1272480
chr8_3 mRNA 6147371 6150565 6147371 ID=Msa1272480-mRNA-1;Parent=Msa1272480;Name=Msa1272480-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0|0|4|0|594
chr8_3 exon 6150326 6150565 6150326 ID=Msa1272480-mRNA-1:exon:2255;Parent=Msa1272480-mRNA-1
chr8_3 exon 6150166 6150312 6150166 ID=Msa1272480-mRNA-1:exon:2254;Parent=Msa1272480-mRNA-1
chr8_3 exon 6149934 6150119 6149934 ID=Msa1272480-mRNA-1:exon:2253;Parent=Msa1272480-mRNA-1
chr8_3 exon 6147371 6148582 6147371 ID=Msa1272480-mRNA-1:exon:2252;Parent=Msa1272480-mRNA-1
chr8_3 CDS 6150326 6150565 6150326 ID=Msa1272480-mRNA-1:cds;Parent=Msa1272480-mRNA-1
chr8_3 CDS 6150166 6150312 6150166 ID=Msa1272480-mRNA-1:cds;Parent=Msa1272480-mRNA-1
chr8_3 CDS 6149934 6150119 6149934 ID=Msa1272480-mRNA-1:cds;Parent=Msa1272480-mRNA-1
chr8_3 CDS 6147371 6148582 6147371 ID=Msa1272480-mRNA-1:cds;Parent=Msa1272480-mRNA-1
Gene Sequence

>Msa1272480

ATGGCTTCCTCTCTACTTCCCCTTCTCCTCTACTCACTGATTCTTCAATCCATCAGTGTTGTATCTCAAACCAAAAGTACTATAGCCATTGGTGATTCTTTTACTGCACAAACCAACACCTCTTCATGGTTGTTTTCACCTTCTGGTGACTTTTCGTTAGGCTTTCTTCCACTAGAAGATACGATGTTTTTTTTGCTTTCCATTTGGTATGCAAACATTTCTGATAAAAAATGTTCTGCGACAGTCCTGCACCAAAAAGGGTCAAAAGTGAAACTCATTGCCAATGATGGGCTGGTGCGGGCTTCTCCAAATGGTGACATGCTATGGAATACTGAGGGACTCGGTGATAGAGTTTCTCATGGTGTGTTCAATGACACAGGAAACTCTTTTCCTGGTGACACCTTGTTGTCTTCTCAGGTTGTTGAAAGGCTTAAAGAGACAAATTTCAGTAAAGGAAGGTTTGAGCTCTTTCTGCAAAATGATGGTAATCTTGTTATGCTTTTTGTTAATTTACCATTTCGTTATGTTAATGAAAATGAAAACTACTATGAAAGTGTAAAACTGTGGGATCCACCATTTGGTGATTCTTTTACTGCACAAACCAGCACCTCTCCCTGGTTGCTTTCACCTTCTGGTGACTTTGCCTTTGGTTTTCTTCCACTCAAAGACACTAATCTTTTATTGCTTTCTATTTGGTATCCCAAAATTTCTGAGAAAACTGTTGTATGGTATGCTAATGGAGACAGTCCTGCACCAAAAGGATCAAAAGTGGAACTCACTGCCAATGATGGGTTGGTGCTAACTTCCCCAAATGGTTTCAGGTTATGGAATACTGAAGGACTCAATGTTAAAGTTTCTCGCGGTGTGTTGAATGACACCGGCAACTTTGTGCTTGAGGATGGTAAATTCAACAGTCTGTGGGAGACTTTCAAGTTTCCTAGTGACACCTTATTGCCTTCTCAAGTTGTGGATAAAGGAAGAAAGCTTTCTTCAAGGCTTAAGGAGACAGATTTCAGTAAAGGAAGGTTTGAACTTGTTTTACAAAGTGATGGTAATCTTGTTATGCATTCTATTAATCTACCATCTGGTTATGTTAATGAAAACTACTTTGAAAGTAATACTGTTGGATCCAGTACATCAAGTGCTGGAGCTCAATTGGTCTTCGACAAATCAGGGTACTTGTATGTTTTAGGAGAGAACAATGAGAAATATAATGTGTTTGAAGAAGAGAGTAACGTCTCGACCACACAATTTTATCTTAGAGCAACTCTTAATTTTGATGGAGTGTTCATACTTTACAAGCATCCCAAGAGTTCAACTAAGAGTGAAGGTTGGACCACAGTATCGTCTAAGCCCTTTAATATATGTACTTATACTGTTAGTGCAGGTAGTGGTGTTTGTGGATATAATAGCTTCTGCACTTTGGGAGTTGATAAGAGACCAAAATGTCAGTGTCCAAAACATTACTCACTGATTGATCCTAATGATCCATATGGCAGCTGCAAGCCAGATTTCATACAAGGATGTGCAGAAGATGATCCAAGTAAAAAGAGAAATGATCTCTATGAGTTTGAGATTTTGATTGACACTGATTGGCCTCTATCAGATTATGTGCTTCAAAGGCCTTTTACTGAAGAGCAGTGTAGGAAATCTTGTATGGATGATTGTTTGTGTTCTGTGGCTATTTTCAGGTTAGGAGATAGTTGTTGGAAGAAGAAGTTACCACTCTCAAATGGGAGAGTTGATGCAACTCTTAATGGTGCCAAGGCTTTCTTGAAAGTGTGA

Protein sequence

>Msa1272480

MASSLLPLLLYSLILQSISVVSQTKSTIAIGDSFTAQTNTSSWLFSPSGDFSLGFLPLEDTMFFLLSIWYANISDKKCSATVLHQKGSKVKLIANDGLVRASPNGDMLWNTEGLGDRVSHGVFNDTGNSFPGDTLLSSQVVERLKETNFSKGRFELFLQNDGNLVMLFVNLPFRYVNENENYYESVKLWDPPFGDSFTAQTSTSPWLLSPSGDFAFGFLPLKDTNLLLLSIWYPKISEKTVVWYANGDSPAPKGSKVELTANDGLVLTSPNGFRLWNTEGLNVKVSRGVLNDTGNFVLEDGKFNSLWETFKFPSDTLLPSQVVDKGRKLSSRLKETDFSKGRFELVLQSDGNLVMHSINLPSGYVNENYFESNTVGSSTSSAGAQLVFDKSGYLYVLGENNEKYNVFEEESNVSTTQFYLRATLNFDGVFILYKHPKSSTKSEGWTTVSSKPFNICTYTVSAGSGVCGYNSFCTLGVDKRPKCQCPKHYSLIDPNDPYGSCKPDFIQGCAEDDPSKKRNDLYEFEILIDTDWPLSDYVLQRPFTEEQCRKSCMDDCLCSVAIFRLGDSCWKKKLPLSNGRVDATLNGAKAFLKV*