Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860080 | XP_003616895.1 | 90.090 | 111 | 0 | 1 | 1 | 100 | 1 | 111 | 1.44e-61 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860080 | sp|A4K526|TM256_BUFGR | 34.579 | 107 | 57 | 2 | 5 | 98 | 6 | 112 | 2.83e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860080 | G7KHB0 | 90.090 | 111 | 0 | 1 | 1 | 100 | 1 | 111 | 6.89e-62 | 193 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0860080 | 0.824167 | 9.347094e-54 | -8.615850e-47 |
| Msa0027540 | Msa0860080 | 0.822394 | 2.425338e-53 | -8.615850e-47 |
| Msa0044710 | Msa0860080 | 0.840385 | 8.978092e-58 | -8.615850e-47 |
| Msa0067150 | Msa0860080 | 0.805342 | 1.398269e-49 | -8.615850e-47 |
| Msa0071240 | Msa0860080 | 0.824614 | 7.336760e-54 | -8.615850e-47 |
| Msa0075310 | Msa0860080 | 0.827074 | 1.912244e-54 | -8.615850e-47 |
| Msa0084940 | Msa0860080 | 0.803473 | 3.428705e-49 | -8.615850e-47 |
| Msa0085360 | Msa0860080 | -0.801850 | 7.413083e-49 | -8.615850e-47 |
| Msa0094100 | Msa0860080 | 0.817379 | 3.399489e-52 | -8.615850e-47 |
| Msa0094920 | Msa0860080 | 0.800973 | 1.120889e-48 | -8.615850e-47 |
| Msa0095010 | Msa0860080 | 0.815585 | 8.574302e-52 | -8.615850e-47 |
| Msa0095380 | Msa0860080 | 0.820665 | 6.083495e-53 | -8.615850e-47 |
| Msa0101060 | Msa0860080 | 0.807417 | 5.106649e-50 | -8.615850e-47 |
| Msa0104290 | Msa0860080 | 0.809187 | 2.142364e-50 | -8.615850e-47 |
| Msa0105420 | Msa0860080 | 0.809088 | 2.249282e-50 | -8.615850e-47 |
| Msa0120330 | Msa0860080 | 0.803433 | 3.495094e-49 | -8.615850e-47 |
| Msa0610370 | Msa0860080 | 0.808035 | 3.774070e-50 | -8.615850e-47 |
| Msa0618010 | Msa0860080 | 0.848453 | 6.070865e-60 | -8.615850e-47 |
| Msa0619070 | Msa0860080 | 0.833868 | 4.163570e-56 | -8.615850e-47 |
| Msa0621590 | Msa0860080 | 0.811979 | 5.337865e-51 | -8.615850e-47 |
| Msa0638280 | Msa0860080 | 0.847758 | 9.440326e-60 | -8.615850e-47 |
| Msa0638320 | Msa0860080 | 0.853108 | 2.971954e-61 | -8.615850e-47 |
| Msa0647450 | Msa0860080 | -0.821255 | 4.448979e-53 | -8.615850e-47 |
| Msa0657050 | Msa0860080 | 0.814180 | 1.756883e-51 | -8.615850e-47 |
| Msa0669850 | Msa0860080 | 0.827747 | 1.318620e-54 | -8.615850e-47 |
| Msa0670270 | Msa0860080 | 0.809711 | 1.653440e-50 | -8.615850e-47 |
| Msa0677270 | Msa0860080 | 0.855687 | 5.338244e-62 | -8.615850e-47 |
| Msa0677820 | Msa0860080 | 0.804956 | 1.684122e-49 | -8.615850e-47 |
| Msa0689010 | Msa0860080 | 0.800749 | 1.245494e-48 | -8.615850e-47 |
| Msa0701030 | Msa0860080 | 0.823812 | 1.132425e-53 | -8.615850e-47 |
| Msa0706370 | Msa0860080 | 0.824342 | 8.501384e-54 | -8.615850e-47 |
| Msa0709500 | Msa0860080 | 0.805382 | 1.371166e-49 | -8.615850e-47 |
| Msa0714600 | Msa0860080 | 0.811360 | 7.277650e-51 | -8.615850e-47 |
| Msa0724830 | Msa0860080 | 0.800920 | 1.149105e-48 | -8.615850e-47 |
| Msa0731710 | Msa0860080 | 0.800353 | 1.499529e-48 | -8.615850e-47 |
| Msa0734660 | Msa0860080 | 0.811391 | 7.166663e-51 | -8.615850e-47 |
| Msa0743200 | Msa0860080 | 0.810763 | 9.805002e-51 | -8.615850e-47 |
| Msa0743260 | Msa0860080 | 0.806145 | 9.483948e-50 | -8.615850e-47 |
| Msa0750350 | Msa0860080 | 0.851027 | 1.159664e-60 | -8.615850e-47 |
| Msa0754720 | Msa0860080 | -0.814992 | 1.161350e-51 | -8.615850e-47 |
| Msa0756310 | Msa0860080 | 0.827832 | 1.258037e-54 | -8.615850e-47 |
| Msa0775260 | Msa0860080 | 0.811321 | 7.423529e-51 | -8.615850e-47 |
| Msa0776220 | Msa0860080 | 0.805309 | 1.420314e-49 | -8.615850e-47 |
| Msa0778320 | Msa0860080 | 0.817259 | 3.618054e-52 | -8.615850e-47 |
| Msa0782490 | Msa0860080 | 0.809302 | 2.023813e-50 | -8.615850e-47 |
| Msa0789270 | Msa0860080 | 0.828082 | 1.095237e-54 | -8.615850e-47 |
| Msa0789280 | Msa0860080 | 0.826764 | 2.268438e-54 | -8.615850e-47 |
| Msa0789290 | Msa0860080 | 0.826945 | 2.053026e-54 | -8.615850e-47 |
| Msa0789300 | Msa0860080 | 0.823366 | 1.440128e-53 | -8.615850e-47 |
| Msa0790390 | Msa0860080 | -0.815464 | 9.120502e-52 | -8.615850e-47 |
| Msa0790850 | Msa0860080 | 0.816966 | 4.211271e-52 | -8.615850e-47 |
| Msa0792090 | Msa0860080 | 0.810555 | 1.087497e-50 | -8.615850e-47 |
| Msa0835730 | Msa0860080 | 0.808658 | 2.779233e-50 | -8.615850e-47 |
| Msa0842210 | Msa0860080 | 0.804934 | 1.702089e-49 | -8.615850e-47 |
| Msa0148120 | Msa0860080 | 0.804041 | 2.612581e-49 | -8.615850e-47 |
| Msa0151690 | Msa0860080 | 0.817965 | 2.507978e-52 | -8.615850e-47 |
| Msa0156650 | Msa0860080 | -0.806376 | 8.476664e-50 | -8.615850e-47 |
| Msa0162770 | Msa0860080 | -0.826306 | 2.916808e-54 | -8.615850e-47 |
| Msa0168100 | Msa0860080 | 0.842550 | 2.414475e-58 | -8.615850e-47 |
| Msa0172350 | Msa0860080 | 0.806479 | 8.062097e-50 | -8.615850e-47 |
| Msa0182930 | Msa0860080 | 0.828728 | 7.648760e-55 | -8.615850e-47 |
| Msa0188630 | Msa0860080 | 0.809803 | 1.579477e-50 | -8.615850e-47 |
| Msa0188680 | Msa0860080 | -0.817380 | 3.398254e-52 | -8.615850e-47 |
| Msa0200950 | Msa0860080 | -0.810245 | 1.268541e-50 | -8.615850e-47 |
| Msa0208520 | Msa0860080 | 0.808446 | 3.085060e-50 | -8.615850e-47 |
| Msa0208630 | Msa0860080 | 0.804395 | 2.204876e-49 | -8.615850e-47 |
| Msa0223290 | Msa0860080 | 0.811308 | 7.470399e-51 | -8.615850e-47 |
| Msa0223380 | Msa0860080 | 0.810627 | 1.049336e-50 | -8.615850e-47 |
| Msa0372670 | Msa0860080 | 0.806166 | 9.386115e-50 | -8.615850e-47 |
| Msa0377530 | Msa0860080 | 0.803996 | 2.670240e-49 | -8.615850e-47 |
| Msa0380040 | Msa0860080 | 0.824627 | 7.285906e-54 | -8.615850e-47 |
| Msa0392070 | Msa0860080 | 0.801437 | 9.010168e-49 | -8.615850e-47 |
| Msa0402330 | Msa0860080 | 0.808246 | 3.402545e-50 | -8.615850e-47 |
| Msa0414950 | Msa0860080 | -0.803658 | 3.138036e-49 | -8.615850e-47 |
| Msa0421780 | Msa0860080 | -0.837900 | 3.955342e-57 | -8.615850e-47 |
| Msa0423360 | Msa0860080 | -0.821036 | 4.997594e-53 | -8.615850e-47 |
| Msa0429290 | Msa0860080 | 0.803968 | 2.705893e-49 | -8.615850e-47 |
| Msa0430620 | Msa0860080 | 0.803552 | 3.300683e-49 | -8.615850e-47 |
| Msa0431430 | Msa0860080 | 0.805492 | 1.300534e-49 | -8.615850e-47 |
| Msa0431830 | Msa0860080 | 0.803375 | 3.591688e-49 | -8.615850e-47 |
| Msa0466060 | Msa0860080 | 0.806203 | 9.217534e-50 | -8.615850e-47 |
| Msa0467960 | Msa0860080 | -0.834458 | 2.962355e-56 | -8.615850e-47 |
| Msa0475580 | Msa0860080 | 0.816206 | 6.231273e-52 | -8.615850e-47 |
| Msa0480320 | Msa0860080 | 0.830811 | 2.379729e-55 | -8.615850e-47 |
| Msa0240780 | Msa0860080 | 0.807335 | 5.314867e-50 | -8.615850e-47 |
| Msa0257240 | Msa0860080 | -0.816739 | 4.734776e-52 | -8.615850e-47 |
| Msa0258670 | Msa0860080 | -0.811099 | 8.292549e-51 | -8.615850e-47 |
| Msa0265820 | Msa0860080 | 0.813993 | 1.931395e-51 | -8.615850e-47 |
| Msa0267760 | Msa0860080 | 0.806251 | 9.005321e-50 | -8.615850e-47 |
| Msa0270220 | Msa0860080 | -0.811817 | 5.790970e-51 | -8.615850e-47 |
| Msa0275030 | Msa0860080 | 0.801370 | 9.298673e-49 | -8.615850e-47 |
| Msa0280490 | Msa0860080 | 0.801386 | 9.229544e-49 | -8.615850e-47 |
| Msa0282170 | Msa0860080 | 0.802999 | 4.298144e-49 | -8.615850e-47 |
| Msa0288240 | Msa0860080 | 0.826881 | 2.126276e-54 | -8.615850e-47 |
| Msa0288330 | Msa0860080 | 0.808706 | 2.714557e-50 | -8.615850e-47 |
| Msa0292180 | Msa0860080 | 0.822387 | 2.434097e-53 | -8.615850e-47 |
| Msa0304290 | Msa0860080 | 0.803855 | 2.856706e-49 | -8.615850e-47 |
| Msa0304330 | Msa0860080 | 0.809666 | 1.690553e-50 | -8.615850e-47 |
| Msa0307830 | Msa0860080 | -0.810950 | 8.930718e-51 | -8.615850e-47 |
| Msa0320100 | Msa0860080 | 0.818406 | 1.992660e-52 | -8.615850e-47 |
| Msa0326670 | Msa0860080 | 0.838762 | 2.372048e-57 | -8.615850e-47 |
| Msa0335040 | Msa0860080 | 0.822661 | 2.102585e-53 | -8.615850e-47 |
| Msa0335140 | Msa0860080 | 0.812911 | 3.339829e-51 | -8.615850e-47 |
| Msa0338500 | Msa0860080 | -0.806549 | 7.795323e-50 | -8.615850e-47 |
| Msa0339870 | Msa0860080 | 0.808973 | 2.380034e-50 | -8.615850e-47 |
| Msa0344830 | Msa0860080 | 0.819817 | 9.516118e-53 | -8.615850e-47 |
| Msa0347360 | Msa0860080 | 0.811699 | 6.142926e-51 | -8.615850e-47 |
| Msa0358170 | Msa0860080 | 0.812133 | 4.941652e-51 | -8.615850e-47 |
| Msa0490300 | Msa0860080 | 0.800831 | 1.198088e-48 | -8.615850e-47 |
| Msa0490350 | Msa0860080 | 0.817509 | 3.179051e-52 | -8.615850e-47 |
| Msa0508200 | Msa0860080 | 0.818441 | 1.957500e-52 | -8.615850e-47 |
| Msa0511720 | Msa0860080 | -0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0517330 | Msa0860080 | 0.820833 | 5.564826e-53 | -8.615850e-47 |
| Msa0517490 | Msa0860080 | 0.800876 | 1.173064e-48 | -8.615850e-47 |
| Msa0519220 | Msa0860080 | 0.810909 | 9.117713e-51 | -8.615850e-47 |
| Msa0526710 | Msa0860080 | 0.805262 | 1.453533e-49 | -8.615850e-47 |
| Msa0527590 | Msa0860080 | 0.808249 | 3.398551e-50 | -8.615850e-47 |
| Msa0532100 | Msa0860080 | -0.807323 | 5.345904e-50 | -8.615850e-47 |
| Msa0535030 | Msa0860080 | 0.815074 | 1.113554e-51 | -8.615850e-47 |
| Msa0535060 | Msa0860080 | 0.821744 | 3.431629e-53 | -8.615850e-47 |
| Msa0555950 | Msa0860080 | 0.809821 | 1.565926e-50 | -8.615850e-47 |
| Msa0564930 | Msa0860080 | 0.813845 | 2.083036e-51 | -8.615850e-47 |
| Msa0568820 | Msa0860080 | 0.834610 | 2.712990e-56 | -8.615850e-47 |
| Msa0577220 | Msa0860080 | 0.820830 | 5.575757e-53 | -8.615850e-47 |
| Msa0579290 | Msa0860080 | 0.800747 | 1.246325e-48 | -8.615850e-47 |
| Msa0579390 | Msa0860080 | 0.803021 | 4.252394e-49 | -8.615850e-47 |
| Msa0580420 | Msa0860080 | 0.804913 | 1.719661e-49 | -8.615850e-47 |
| Msa0590680 | Msa0860080 | 0.802547 | 5.326945e-49 | -8.615850e-47 |
| Msa0591060 | Msa0860080 | 0.823943 | 1.054769e-53 | -8.615850e-47 |
| Msa0591770 | Msa0860080 | 0.847373 | 1.205046e-59 | -8.615850e-47 |
| Msa0860080 | Msa0863370 | 0.816093 | 6.605488e-52 | -8.615850e-47 |
| Msa0860080 | Msa0867050 | -0.801457 | 8.924916e-49 | -8.615850e-47 |
| Msa0860080 | Msa0870620 | 0.806867 | 6.676748e-50 | -8.615850e-47 |
| Msa0860080 | Msa0874500 | 0.835705 | 1.436197e-56 | -8.615850e-47 |
| Msa0860080 | Msa0874570 | 0.803509 | 3.370514e-49 | -8.615850e-47 |
| Msa0860080 | Msa0888530 | 0.803734 | 3.026735e-49 | -8.615850e-47 |
| Msa0860080 | Msa0890250 | 0.835545 | 1.576772e-56 | -8.615850e-47 |
| Msa0860080 | Msa0899230 | 0.825616 | 4.253197e-54 | -8.615850e-47 |
| Msa0860080 | Msa0908170 | 0.828721 | 7.680098e-55 | -8.615850e-47 |
| Msa0860080 | Msa0937940 | 0.807297 | 5.415496e-50 | -8.615850e-47 |
| Msa0860080 | Msa0944770 | 0.806069 | 9.839144e-50 | -8.615850e-47 |
| Msa0860080 | Msa0960160 | 0.800084 | 1.700903e-48 | -8.615850e-47 |
| Msa0860080 | Msa1015060 | 0.813893 | 2.032887e-51 | -8.615850e-47 |
| Msa0860080 | Msa1026760 | 0.817603 | 3.027145e-52 | -8.615850e-47 |
| Msa0860080 | Msa1026790 | 0.808972 | 2.381578e-50 | -8.615850e-47 |
| Msa0860080 | Msa1036390 | 0.815473 | 9.079176e-52 | -8.615850e-47 |
| Msa0860080 | Msa1040890 | 0.817097 | 3.935492e-52 | -8.615850e-47 |
| Msa0860080 | Msa1072460 | -0.816832 | 4.512248e-52 | -8.615850e-47 |
| Msa0860080 | Msa1074060 | 0.800881 | 1.170694e-48 | -8.615850e-47 |
| Msa0860080 | Msa1076680 | 0.809959 | 1.462012e-50 | -8.615850e-47 |
| Msa0860080 | Msa1079370 | -0.802405 | 5.698451e-49 | -8.615850e-47 |
| Msa0860080 | Msa1097430 | 0.808024 | 3.794545e-50 | -8.615850e-47 |
| Msa0860080 | Msa1111630 | 0.801974 | 6.988505e-49 | -8.615850e-47 |
| Msa0860080 | Msa1130210 | -0.821904 | 3.150534e-53 | -8.615850e-47 |
| Msa0860080 | Msa1154160 | 0.818468 | 1.929517e-52 | -8.615850e-47 |
| Msa0860080 | Msa1159360 | 0.816071 | 6.678769e-52 | -8.615850e-47 |
| Msa0860080 | Msa1171360 | 0.805293 | 1.431616e-49 | -8.615850e-47 |
| Msa0860080 | Msa1172590 | 0.804637 | 1.963441e-49 | -8.615850e-47 |
| Msa0860080 | Msa1199560 | 0.820244 | 7.598772e-53 | -8.615850e-47 |
| Msa0860080 | Msa1206020 | 0.838691 | 2.473493e-57 | -8.615850e-47 |
| Msa0860080 | Msa1217810 | 0.817584 | 3.057341e-52 | -8.615850e-47 |
| Msa0860080 | Msa1217830 | 0.826514 | 2.602546e-54 | -8.615850e-47 |
| Msa0860080 | Msa1217860 | 0.825102 | 5.629528e-54 | -8.615850e-47 |
| Msa0860080 | Msa1223160 | -0.807622 | 4.620561e-50 | -8.615850e-47 |
| Msa0860080 | Msa1224670 | 0.800077 | 1.706568e-48 | -8.615850e-47 |
| Msa0860080 | Msa1228210 | 0.809225 | 2.102496e-50 | -8.615850e-47 |
| Msa0860080 | Msa1233500 | 0.827433 | 1.568642e-54 | -8.615850e-47 |
| Msa0860080 | Msa1237030 | 0.825297 | 5.061273e-54 | -8.615850e-47 |
| Msa0860080 | Msa1242330 | 0.805220 | 1.483186e-49 | -8.615850e-47 |
| Msa0860080 | Msa1246740 | 0.807466 | 4.986403e-50 | -8.615850e-47 |
| Msa0860080 | Msa1254510 | 0.826184 | 3.118363e-54 | -8.615850e-47 |
| Msa0860080 | Msa1276190 | 0.800695 | 1.277231e-48 | -8.615850e-47 |
| Msa0860080 | Msa1280130 | 0.822917 | 1.832811e-53 | -8.615850e-47 |
| Msa0860080 | Msa1282920 | 0.803818 | 2.907967e-49 | -8.615850e-47 |
| Msa0860080 | Msa1297090 | 0.816250 | 6.090795e-52 | -8.615850e-47 |
| Msa0860080 | Msa1300350 | -0.815662 | 8.241241e-52 | -8.615850e-47 |
| Msa0860080 | Msa1328700 | 0.806147 | 9.473541e-50 | -8.615850e-47 |
| Msa0860080 | Msa1328850 | 0.838116 | 3.481443e-57 | -8.615850e-47 |
| Msa0860080 | Msa1335860 | 0.803410 | 3.532688e-49 | -8.615850e-47 |
| Msa0860080 | Msa1343820 | 0.802295 | 6.003431e-49 | -8.615850e-47 |
| Msa0860080 | Msa1362510 | 0.803268 | 3.780334e-49 | -8.615850e-47 |
| Msa0860080 | Msa1363890 | 0.800509 | 1.394163e-48 | -8.615850e-47 |
| Msa0860080 | Msa1369530 | 0.824896 | 6.295539e-54 | -8.615850e-47 |
| Msa0860080 | Msa1390310 | 0.814626 | 1.400209e-51 | -8.615850e-47 |
| Msa0860080 | Msa1397970 | 0.803622 | 3.192799e-49 | -8.615850e-47 |
| Msa0860080 | Msa1403580 | -0.812646 | 3.818617e-51 | -8.615850e-47 |
| Msa0860080 | Msa1403930 | -0.812432 | 4.253193e-51 | -8.615850e-47 |
| Msa0860080 | Msa1404730 | 0.810054 | 1.394960e-50 | -8.615850e-47 |
| Msa0860080 | Msa1408790 | 0.802371 | 5.791108e-49 | -8.615850e-47 |
| Msa0860080 | Msa1423450 | 0.801857 | 7.386286e-49 | -8.615850e-47 |
| Msa0860080 | Msa1427830 | 0.824900 | 6.282409e-54 | -8.615850e-47 |
| Msa0860080 | Msa1439960 | 0.825806 | 3.834963e-54 | -8.615850e-47 |
| Msa0860080 | Msa1440000 | 0.802941 | 4.417314e-49 | -8.615850e-47 |
| Msa0860080 | Msa1443290 | -0.810268 | 1.254340e-50 | -8.615850e-47 |
| Msa0860080 | Msa1453620 | 0.814940 | 1.192391e-51 | -8.615850e-47 |
| Msa0860080 | Msa1454110 | 0.818985 | 1.472663e-52 | -8.615850e-47 |
| Msa0860080 | Msa1461250 | -0.831475 | 1.634994e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860080 | MtrunA17_Chr5g0439131 | 90.090 | 111 | 0 | 1 | 1 | 100 | 1 | 111 | 1.33e-65 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0860080 | AT2G04900.1 | 74.775 | 111 | 17 | 1 | 1 | 100 | 18 | 128 | 3.08e-55 | 167 |
| Msa0860080 | AT2G04900.2 | 73.418 | 79 | 10 | 1 | 1 | 68 | 18 | 96 | 6.75e-35 | 115 |
Find 36 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAGTGGCTGCAATTTC+AGG | 0.172258 | 5_4:+58568687 | Msa0860080:CDS |
| CATCTTTGTAAGTAGGGTTT+TGG | 0.222654 | 5_4:-58568758 | None:intergenic |
| ATTAATCCATCTTTATAAAA+TGG | 0.229362 | 5_4:+58572036 | Msa0860080:three_prime_UTR |
| AGAAAATGAATCCTCTAATT+TGG | 0.259375 | 5_4:+58568664 | Msa0860080:exon |
| GCGGGAATCTTGGCTTTCTC+TGG | 0.298350 | 5_4:+58570264 | Msa0860080:CDS |
| GGAGTAGCAGCACTTGGATT+AGG | 0.313667 | 5_4:+58568708 | Msa0860080:CDS |
| GCCACTTTGTGCCAAATTAG+AGG | 0.313696 | 5_4:-58568675 | None:intergenic |
| TGATTTGATTTGATTTGATT+TGG | 0.318461 | 5_4:-58568577 | None:intergenic |
| TATATTTCACACTTAATGTT+AGG | 0.330172 | 5_4:+58572000 | Msa0860080:three_prime_UTR |
| TTTGGTTCATACTGCTGCTT+TGG | 0.333542 | 5_4:+58568913 | Msa0860080:CDS |
| TCTTTATAAAATGGCTTGTA+AGG | 0.344925 | 5_4:+58572045 | Msa0860080:three_prime_UTR |
| TTGAACTTATAGGTGTTATA+CGG | 0.355250 | 5_4:+58571716 | Msa0860080:intron |
| TACAGCATCTCTCTATCATT+TGG | 0.382210 | 5_4:+58568895 | Msa0860080:CDS |
| TATTCAACCTTGGCTCCATT+TGG | 0.390832 | 5_4:+58571762 | Msa0860080:CDS |
| GAAGATACATCTTTGTAAGT+AGG | 0.396539 | 5_4:-58568765 | None:intergenic |
| AATCATGTTTATCTTGCCTA+TGG | 0.420030 | 5_4:+58571938 | Msa0860080:three_prime_UTR |
| AAGATACATCTTTGTAAGTA+GGG | 0.421799 | 5_4:-58568764 | None:intergenic |
| TTTGAAAGCGTGTGCGCCAT+AGG | 0.453648 | 5_4:-58568733 | None:intergenic |
| TCAACCTTGGCTCCATTTGG+CGG | 0.473345 | 5_4:+58571765 | Msa0860080:CDS |
| TTAATTTAGACAATTGTGTA+GGG | 0.474128 | 5_4:+58571893 | Msa0860080:three_prime_UTR |
| CGGGAATCTTGGCTTTCTCT+GGG | 0.479972 | 5_4:+58570265 | Msa0860080:CDS |
| GCACTTGGATTAGGAACCTA+TGG | 0.491752 | 5_4:+58568717 | Msa0860080:CDS |
| ATTTCAGGAGTAGCAGCACT+TGG | 0.496511 | 5_4:+58568702 | Msa0860080:CDS |
| ATTAATTTAGACAATTGTGT+AGG | 0.497013 | 5_4:+58571892 | Msa0860080:three_prime_UTR |
| ATAAATGCAAAACCGCCAAA+TGG | 0.520625 | 5_4:-58571777 | None:intergenic |
| AGACAGAAAATATTCAACCT+TGG | 0.568405 | 5_4:+58571752 | Msa0860080:CDS |
| TCCTCTAATTTGGCACAAAG+TGG | 0.595063 | 5_4:+58568674 | Msa0860080:CDS |
| ACTTCAAGAGTATAAACCAT+AGG | 0.607602 | 5_4:-58571954 | None:intergenic |
| CTACTGCATTGAGAGAAGAA+AGG | 0.620518 | 5_4:+58568615 | Msa0860080:five_prime_UTR |
| TGATAGATGTTGTAGCAGCA+CGG | 0.623809 | 5_4:-58571840 | None:intergenic |
| AAAACCGCCAAATGGAGCCA+AGG | 0.635814 | 5_4:-58571769 | None:intergenic |
| TAATTTAGACAATTGTGTAG+GGG | 0.637874 | 5_4:+58571894 | Msa0860080:three_prime_UTR |
| TGGCTTGTAAGGTTAGTGAG+AGG | 0.642567 | 5_4:+58572056 | Msa0860080:three_prime_UTR |
| AGATGTTGTAGCAGCACGGT+GGG | 0.650407 | 5_4:-58571836 | None:intergenic |
| TTTGCATTTATAGCAGCCTG+GGG | 0.672704 | 5_4:+58571789 | Msa0860080:CDS |
| TAGATGTTGTAGCAGCACGG+TGG | 0.760136 | 5_4:-58571837 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATCTCTATAATTTT+TGG | + | chr5_4:58570367-58570386 | Msa0860080:intron | 10.0% |
| !!! | TATTTATCTCTATAATTTTT+GGG | + | chr5_4:58570368-58570387 | Msa0860080:intron | 10.0% |
| !!! | ATACAAATAAATAAGCTTTT+AGG | - | chr5_4:58569150-58569169 | None:intergenic | 15.0% |
| !! | AATTGATTATAACTAGAATT+TGG | + | chr5_4:58569491-58569510 | Msa0860080:intron | 15.0% |
| !!! | AAAATTGATTTTGACATATT+CGG | + | chr5_4:58569527-58569546 | Msa0860080:intron | 15.0% |
| !!! | ATTTATCTCTATAATTTTTG+GGG | + | chr5_4:58570369-58570388 | Msa0860080:intron | 15.0% |
| !! | ATTTCATTCTAATAATACTT+TGG | - | chr5_4:58570547-58570566 | None:intergenic | 15.0% |
| !!! | TGTTTTTCACAAATATTTTA+TGG | - | chr5_4:58571649-58571668 | None:intergenic | 15.0% |
| !! | ATTAATCCATCTTTATAAAA+TGG | + | chr5_4:58572036-58572055 | Msa0860080:three_prime_UTR | 15.0% |
| !!! | TGATTTGATTTGATTTGATT+TGG | - | chr5_4:58568580-58568599 | None:intergenic | 20.0% |
| !! | AATAGAAGTGAAAATGAATT+GGG | - | chr5_4:58568805-58568824 | None:intergenic | 20.0% |
| !! | AAATAGAAGTGAAAATGAAT+TGG | - | chr5_4:58568806-58568825 | None:intergenic | 20.0% |
| !!! | CTAATTTTGAATGTTATTTG+TGG | + | chr5_4:58568860-58568879 | Msa0860080:intron | 20.0% |
| !! | ACACATAGTAATTAAGAAAT+GGG | - | chr5_4:58568978-58568997 | None:intergenic | 20.0% |
| !! | TACACATAGTAATTAAGAAA+TGG | - | chr5_4:58568979-58568998 | None:intergenic | 20.0% |
| !! | TTAATTACTATGTGTATGTT+TGG | + | chr5_4:58568983-58569002 | Msa0860080:intron | 20.0% |
| !! | TATTATTTATAACCTTGTCA+AGG | + | chr5_4:58569063-58569082 | Msa0860080:intron | 20.0% |
| !!! | AGAATTTATTTCTACATACT+TGG | + | chr5_4:58569357-58569376 | Msa0860080:intron | 20.0% |
| !! | TGATTTCAAATGAATTGTTT+GGG | - | chr5_4:58569855-58569874 | None:intergenic | 20.0% |
| !! | TTGATTTCAAATGAATTGTT+TGG | - | chr5_4:58569856-58569875 | None:intergenic | 20.0% |
| !!! | GTATATGTTTGATTTCATTT+TGG | + | chr5_4:58569908-58569927 | Msa0860080:intron | 20.0% |
| !! | GGATATATTTATGTAGAAAA+GGG | - | chr5_4:58570066-58570085 | None:intergenic | 20.0% |
| !! | TGGATATATTTATGTAGAAA+AGG | - | chr5_4:58570067-58570086 | None:intergenic | 20.0% |
| !! | AATGTAAAATGGTTTACATT+TGG | - | chr5_4:58570087-58570106 | None:intergenic | 20.0% |
| !! | AAAATCAGTTGAATGTAAAA+TGG | - | chr5_4:58570098-58570117 | None:intergenic | 20.0% |
| !! | AGAGATAAATAAAAACAACT+TGG | - | chr5_4:58570359-58570378 | None:intergenic | 20.0% |
| !!! | TAAGATTGTTCAGTTTTTAA+TGG | + | chr5_4:58570951-58570970 | Msa0860080:intron | 20.0% |
| !!! | AAGATTGTTCAGTTTTTAAT+GGG | + | chr5_4:58570952-58570971 | Msa0860080:intron | 20.0% |
| !! | AATCAACTAATTAAAACCAT+GGG | - | chr5_4:58571300-58571319 | None:intergenic | 20.0% |
| !! | AAATCAACTAATTAAAACCA+TGG | - | chr5_4:58571301-58571320 | None:intergenic | 20.0% |
| !! | ATTAATTTAGACAATTGTGT+AGG | + | chr5_4:58571892-58571911 | Msa0860080:three_prime_UTR | 20.0% |
| !! | TTAATTTAGACAATTGTGTA+GGG | + | chr5_4:58571893-58571912 | Msa0860080:three_prime_UTR | 20.0% |
| !!! | GATTTTTTTTCTTTCAAATG+AGG | - | chr5_4:58571922-58571941 | None:intergenic | 20.0% |
| !! | TATATTTCACACTTAATGTT+AGG | + | chr5_4:58572000-58572019 | Msa0860080:three_prime_UTR | 20.0% |
| ! | AGAAAATGAATCCTCTAATT+TGG | + | chr5_4:58568664-58568683 | Msa0860080:exon | 25.0% |
| ! | AAGATACATCTTTGTAAGTA+GGG | - | chr5_4:58568767-58568786 | None:intergenic | 25.0% |
| ! | ATAGAAGTGAAAATGAATTG+GGG | - | chr5_4:58568804-58568823 | None:intergenic | 25.0% |
| !! | TTTGAATGTTATTTGTGGAT+AGG | + | chr5_4:58568865-58568884 | Msa0860080:intron | 25.0% |
| ! | TTCTCATAAGCTCAAAAATA+TGG | + | chr5_4:58569177-58569196 | Msa0860080:intron | 25.0% |
| !! | TGGTATAGTGATTTATGTTT+TGG | + | chr5_4:58569291-58569310 | Msa0860080:intron | 25.0% |
| !!! | TGAGTCAAAATCGATTTTTA+AGG | + | chr5_4:58569331-58569350 | Msa0860080:intron | 25.0% |
| !! | TTTGAAATATTTGATTGCTC+TGG | + | chr5_4:58569696-58569715 | Msa0860080:intron | 25.0% |
| !! | AAACTGAAGTGATTTTTGTT+TGG | - | chr5_4:58569819-58569838 | None:intergenic | 25.0% |
| ! | ACATATACATAATGTGTGTT+TGG | - | chr5_4:58569896-58569915 | None:intergenic | 25.0% |
| !!! | TATGTTTGATTTCATTTTGG+AGG | + | chr5_4:58569911-58569930 | Msa0860080:intron | 25.0% |
| !! | GGAATTATTTGTGTTGATAT+TGG | + | chr5_4:58570481-58570500 | Msa0860080:intron | 25.0% |
| ! | TAATTGCTCTTACTGAATTA+AGG | + | chr5_4:58570513-58570532 | Msa0860080:intron | 25.0% |
| ! | TTCTAATAATACTTTGGATC+TGG | - | chr5_4:58570541-58570560 | None:intergenic | 25.0% |
| !! | AGATTGTTCAGTTTTTAATG+GGG | + | chr5_4:58570953-58570972 | Msa0860080:intron | 25.0% |
| ! | ATTTATGATAAAGTGGAGTT+TGG | + | chr5_4:58571129-58571148 | Msa0860080:intron | 25.0% |
| !! | TCTGACATTCAATATCTTTT+TGG | + | chr5_4:58571177-58571196 | Msa0860080:intron | 25.0% |
| !!! | ACATTCAATATCTTTTTGGT+AGG | + | chr5_4:58571181-58571200 | Msa0860080:intron | 25.0% |
| ! | TCAAGTAAGAACACAATTAT+TGG | - | chr5_4:58571344-58571363 | None:intergenic | 25.0% |
| !! | TTACTGGTTAACTAATCAAA+AGG | - | chr5_4:58571404-58571423 | None:intergenic | 25.0% |
| ! | GAAGAAATGTTTGAACTTAT+AGG | + | chr5_4:58571706-58571725 | Msa0860080:intron | 25.0% |
| !! | TTGAACTTATAGGTGTTATA+CGG | + | chr5_4:58571716-58571735 | Msa0860080:intron | 25.0% |
| ! | TAATTTAGACAATTGTGTAG+GGG | + | chr5_4:58571894-58571913 | Msa0860080:three_prime_UTR | 25.0% |
| !!! | TACAAGCCATTTTATAAAGA+TGG | - | chr5_4:58572045-58572064 | None:intergenic | 25.0% |
| !! | TCTTTATAAAATGGCTTGTA+AGG | + | chr5_4:58572045-58572064 | Msa0860080:three_prime_UTR | 25.0% |
| ! | ATCTTTGTAAGTAGGGTTTT+GGG | - | chr5_4:58568760-58568779 | None:intergenic | 30.0% |
| GAAGATACATCTTTGTAAGT+AGG | - | chr5_4:58568768-58568787 | None:intergenic | 30.0% | |
| TAGAAGTGAAAATGAATTGG+GGG | - | chr5_4:58568803-58568822 | None:intergenic | 30.0% | |
| ! | ATGTTATTTGTGGATAGGTT+TGG | + | chr5_4:58568870-58568889 | Msa0860080:intron | 30.0% |
| !!! | ACATTGGGATTTTTGGTAAT+TGG | - | chr5_4:58568947-58568966 | None:intergenic | 30.0% |
| ! | ACTTACAACATTGGGATTTT+TGG | - | chr5_4:58568954-58568973 | None:intergenic | 30.0% |
| AAATGGGAACTTACAACATT+GGG | - | chr5_4:58568962-58568981 | None:intergenic | 30.0% | |
| CAAAAATATGGCAATCCAAA+CGG | + | chr5_4:58569189-58569208 | Msa0860080:intron | 30.0% | |
| AAAAATATGGCAATCCAAAC+GGG | + | chr5_4:58569190-58569209 | Msa0860080:intron | 30.0% | |
| ! | GACTAAATTGATTCTGATTC+TGG | + | chr5_4:58569253-58569272 | Msa0860080:intron | 30.0% |
| TAATTTGATGCTAGAACTTG+AGG | + | chr5_4:58569420-58569439 | Msa0860080:intron | 30.0% | |
| TCTAACTTGAAGCTAGAATA+TGG | + | chr5_4:58569571-58569590 | Msa0860080:intron | 30.0% | |
| TTTGACATATTTGATTGCTC+TGG | + | chr5_4:58569616-58569635 | Msa0860080:intron | 30.0% | |
| ! | TCTAACTTGAAGCTAGATTT+TGG | + | chr5_4:58569651-58569670 | Msa0860080:intron | 30.0% |
| TCAAACACAGACTTCATATA+TGG | + | chr5_4:58570169-58570188 | Msa0860080:intron | 30.0% | |
| AGACTTCATATATGGTTACT+GGG | + | chr5_4:58570177-58570196 | Msa0860080:intron | 30.0% | |
| !!! | TCTATAATTTTTGGGGTGAA+GGG | + | chr5_4:58570376-58570395 | Msa0860080:intron | 30.0% |
| GAATCAACACTTCAATTTGA+AGG | + | chr5_4:58570744-58570763 | Msa0860080:intron | 30.0% | |
| ACCACAAATAGTGAAATAAG+GGG | - | chr5_4:58571058-58571077 | None:intergenic | 30.0% | |
| GACCACAAATAGTGAAATAA+GGG | - | chr5_4:58571059-58571078 | None:intergenic | 30.0% | |
| TGACCACAAATAGTGAAATA+AGG | - | chr5_4:58571060-58571079 | None:intergenic | 30.0% | |
| ! | AAGGTGGATTTATGATAAAG+TGG | + | chr5_4:58571122-58571141 | Msa0860080:intron | 30.0% |
| ! | TCCATTTACCTGTAACATTT+TGG | + | chr5_4:58571207-58571226 | Msa0860080:intron | 30.0% |
| TCCAAAATGTTACAGGTAAA+TGG | - | chr5_4:58571211-58571230 | None:intergenic | 30.0% | |
| ! | GATCACTTGATGGTAAATAT+TGG | + | chr5_4:58571362-58571381 | Msa0860080:intron | 30.0% |
| ! | ACTTGATGGTAAATATTGGA+TGG | + | chr5_4:58571366-58571385 | Msa0860080:intron | 30.0% |
| TACTACAAAAAACTTGAGCA+TGG | - | chr5_4:58571433-58571452 | None:intergenic | 30.0% | |
| ! | TTGTCTTGATAAAGGGTATA+CGG | - | chr5_4:58571580-58571599 | None:intergenic | 30.0% |
| CTAGACTTTGTCTTGATAAA+GGG | - | chr5_4:58571587-58571606 | None:intergenic | 30.0% | |
| TCTAGACTTTGTCTTGATAA+AGG | - | chr5_4:58571588-58571607 | None:intergenic | 30.0% | |
| AGACAGAAAATATTCAACCT+TGG | + | chr5_4:58571752-58571771 | Msa0860080:CDS | 30.0% | |
| AATCATGTTTATCTTGCCTA+TGG | + | chr5_4:58571938-58571957 | Msa0860080:three_prime_UTR | 30.0% | |
| ! | ACTTCAAGAGTATAAACCAT+AGG | - | chr5_4:58571957-58571976 | None:intergenic | 30.0% |
| ! | TCTTTGTAAGTAGGGTTTTG+GGG | - | chr5_4:58568759-58568778 | None:intergenic | 35.0% |
| ! | CATCTTTGTAAGTAGGGTTT+TGG | - | chr5_4:58568761-58568780 | None:intergenic | 35.0% |
| GAAAATGAATTGGGGGTAAA+AGG | - | chr5_4:58568796-58568815 | None:intergenic | 35.0% | |
| TACAGCATCTCTCTATCATT+TGG | + | chr5_4:58568895-58568914 | Msa0860080:CDS | 35.0% | |
| GAAATGGGAACTTACAACAT+TGG | - | chr5_4:58568963-58568982 | None:intergenic | 35.0% | |
| TAACCTTGTCAAGGTAGTTT+AGG | + | chr5_4:58569072-58569091 | Msa0860080:intron | 35.0% | |
| TTACCTAAACTACCTTGACA+AGG | - | chr5_4:58569078-58569097 | None:intergenic | 35.0% | |
| !!! | TCTGGCTGAATTTTAGTTGA+TGG | + | chr5_4:58569271-58569290 | Msa0860080:intron | 35.0% |
| !!! | CGATTTTGACTCACTTTTAC+AGG | - | chr5_4:58569324-58569343 | None:intergenic | 35.0% |
| ! | TTGGTTCTCTCAAGTAGAAT+TGG | + | chr5_4:58569376-58569395 | Msa0860080:intron | 35.0% |
| ! | AGTTGATTCTAACTTGAAGC+TGG | + | chr5_4:58569724-58569743 | Msa0860080:intron | 35.0% |
| GGAGGAGATAGAATTGATTA+TGG | + | chr5_4:58569929-58569948 | Msa0860080:intron | 35.0% | |
| TTGAATATTCTCGCGTAGAA+TGG | + | chr5_4:58569977-58569996 | Msa0860080:intron | 35.0% | |
| ! | TCTGACTTGAAGCTAGAATT+TGG | + | chr5_4:58570002-58570021 | Msa0860080:intron | 35.0% |
| AGGGTTGAACAATGAATAGT+AGG | - | chr5_4:58570047-58570066 | None:intergenic | 35.0% | |
| GAAGTCTGTGTTTGATTCTA+CGG | - | chr5_4:58570164-58570183 | None:intergenic | 35.0% | |
| CAGACTTCATATATGGTTAC+TGG | + | chr5_4:58570176-58570195 | Msa0860080:intron | 35.0% | |
| ! | GTCTTTTTCTTTGTGCAGTT+TGG | + | chr5_4:58570228-58570247 | Msa0860080:intron | 35.0% |
| ! | TTTTTCTTTGTGCAGTTTGG+AGG | + | chr5_4:58570231-58570250 | Msa0860080:intron | 35.0% |
| ! | TTTTCTTTGTGCAGTTTGGA+GGG | + | chr5_4:58570232-58570251 | Msa0860080:intron | 35.0% |
| !!! | CTCTATAATTTTTGGGGTGA+AGG | + | chr5_4:58570375-58570394 | Msa0860080:intron | 35.0% |
| !!! | CTATAATTTTTGGGGTGAAG+GGG | + | chr5_4:58570377-58570396 | Msa0860080:intron | 35.0% |
| TGTCACTACTGCTTAAGAAT+AGG | + | chr5_4:58570460-58570479 | Msa0860080:intron | 35.0% | |
| TGTTTGGGTCATGTAAATGA+TGG | - | chr5_4:58570792-58570811 | None:intergenic | 35.0% | |
| GAATGTAACCACACATGTTT+GGG | - | chr5_4:58570807-58570826 | None:intergenic | 35.0% | |
| TGAATGTAACCACACATGTT+TGG | - | chr5_4:58570808-58570827 | None:intergenic | 35.0% | |
| TCTAGTACTCAATGAAGTTG+AGG | + | chr5_4:58570893-58570912 | Msa0860080:intron | 35.0% | |
| ! | ACCCCTTATTTCACTATTTG+TGG | + | chr5_4:58571054-58571073 | Msa0860080:intron | 35.0% |
| ATTTCACTATTTGTGGTCAG+AGG | + | chr5_4:58571061-58571080 | Msa0860080:intron | 35.0% | |
| TTTCACTATTTGTGGTCAGA+GGG | + | chr5_4:58571062-58571081 | Msa0860080:intron | 35.0% | |
| ! | CATTGATCTGTGCTTTTCTT+AGG | - | chr5_4:58571097-58571116 | None:intergenic | 35.0% |
| GATATTGAATGTCAGATCTG+AGG | - | chr5_4:58571173-58571192 | None:intergenic | 35.0% | |
| !! | AACATTTTGGAGATCTGCAA+TGG | + | chr5_4:58571220-58571239 | Msa0860080:intron | 35.0% |
| ATCACTCATTTGTCGCATAA+AGG | - | chr5_4:58571259-58571278 | None:intergenic | 35.0% | |
| GTTGTAGAATTTACTTCCCA+TGG | + | chr5_4:58571281-58571300 | Msa0860080:intron | 35.0% | |
| GTTCTTACTTGATCACTTGA+TGG | + | chr5_4:58571352-58571371 | Msa0860080:intron | 35.0% | |
| TAAGTGAATCGTTGAACCAT+CGG | - | chr5_4:58571529-58571548 | None:intergenic | 35.0% | |
| TATACGGCAATAGCAAGTAA+AGG | - | chr5_4:58571564-58571583 | None:intergenic | 35.0% | |
| ATAAATGCAAAACCGCCAAA+TGG | - | chr5_4:58571780-58571799 | None:intergenic | 35.0% | |
| ! | TTTTGCATTTATAGCAGCCT+GGG | + | chr5_4:58571788-58571807 | Msa0860080:CDS | 35.0% |
| CTACTGCATTGAGAGAAGAA+AGG | + | chr5_4:58568615-58568634 | Msa0860080:five_prime_UTR | 40.0% | |
| TCCTCTAATTTGGCACAAAG+TGG | + | chr5_4:58568674-58568693 | Msa0860080:CDS | 40.0% | |
| ! | TTTGGTTCATACTGCTGCTT+TGG | + | chr5_4:58568913-58568932 | Msa0860080:CDS | 40.0% |
| CAAACATACACATACCCGTT+TGG | - | chr5_4:58569207-58569226 | None:intergenic | 40.0% | |
| CAAACGGGTATGTGTATGTT+TGG | + | chr5_4:58569205-58569224 | Msa0860080:intron | 40.0% | |
| ! | CTTCTAGCTATTTGTGATGC+TGG | + | chr5_4:58570310-58570329 | Msa0860080:intron | 40.0% |
| GGGTGTGAGAAATCAAAAGT+AGG | + | chr5_4:58570397-58570416 | Msa0860080:intron | 40.0% | |
| ACATCTTTCAAATCCCACAG+CGG | - | chr5_4:58570443-58570462 | None:intergenic | 40.0% | |
| !! | ACATGAGCATCGAAAGTATC+CGG | - | chr5_4:58570643-58570662 | None:intergenic | 40.0% |
| TTACATGACCCAAACATGTG+TGG | + | chr5_4:58570796-58570815 | Msa0860080:intron | 40.0% | |
| CACATCATCCTTCGACTATA+TGG | - | chr5_4:58570922-58570941 | None:intergenic | 40.0% | |
| GTCGAAGGATGATGTGAATT+CGG | + | chr5_4:58570926-58570945 | Msa0860080:intron | 40.0% | |
| GCGTCAAATCACAAGTTGTT+AGG | - | chr5_4:58570985-58571004 | None:intergenic | 40.0% | |
| GTATCGAGAATCTCCTACAA+TGG | - | chr5_4:58571036-58571055 | None:intergenic | 40.0% | |
| AGCACAGATCAATGTGACAA+AGG | + | chr5_4:58571103-58571122 | Msa0860080:intron | 40.0% | |
| ACAGATCAATGTGACAAAGG+TGG | + | chr5_4:58571106-58571125 | Msa0860080:intron | 40.0% | |
| GCAGATCTCCAAAATGTTAC+AGG | - | chr5_4:58571218-58571237 | None:intergenic | 40.0% | |
| ! | TTGAGCATGGAGTATCTTAC+TGG | - | chr5_4:58571420-58571439 | None:intergenic | 40.0% |
| ! | TTTCTAGTGTCTTTGTCCGA+TGG | + | chr5_4:58571510-58571529 | Msa0860080:intron | 40.0% |
| GATGGTTCAACGATTCACTT+AGG | + | chr5_4:58571528-58571547 | Msa0860080:intron | 40.0% | |
| TATTCAACCTTGGCTCCATT+TGG | + | chr5_4:58571762-58571781 | Msa0860080:CDS | 40.0% | |
| ! | GTTTTGCATTTATAGCAGCC+TGG | + | chr5_4:58571787-58571806 | Msa0860080:CDS | 40.0% |
| TTTGCATTTATAGCAGCCTG+GGG | + | chr5_4:58571789-58571808 | Msa0860080:CDS | 40.0% | |
| TGATAGATGTTGTAGCAGCA+CGG | - | chr5_4:58571843-58571862 | None:intergenic | 40.0% | |
| ! | GCCACTTTGTGCCAAATTAG+AGG | - | chr5_4:58568678-58568697 | None:intergenic | 45.0% |
| CACAAAGTGGCTGCAATTTC+AGG | + | chr5_4:58568687-58568706 | Msa0860080:CDS | 45.0% | |
| ATTTCAGGAGTAGCAGCACT+TGG | + | chr5_4:58568702-58568721 | Msa0860080:CDS | 45.0% | |
| ! | GCACTTGGATTAGGAACCTA+TGG | + | chr5_4:58568717-58568736 | Msa0860080:CDS | 45.0% |
| ! | GTTTGGAGGGCTTTTAACAG+CGG | + | chr5_4:58570245-58570264 | Msa0860080:intron | 45.0% |
| ! | TTTGGAGGGCTTTTAACAGC+GGG | + | chr5_4:58570246-58570265 | Msa0860080:CDS | 45.0% |
| ! | GCTTTTAACAGCGGGAATCT+TGG | + | chr5_4:58570254-58570273 | Msa0860080:CDS | 45.0% |
| AAAGATGTCACTACCGCTGT+GGG | + | chr5_4:58570427-58570446 | Msa0860080:intron | 45.0% | |
| AAGGTGTGTCTGACACATGT+TGG | + | chr5_4:58570763-58570782 | Msa0860080:intron | 45.0% | |
| TGAGGTCTCCATATAGTCGA+AGG | + | chr5_4:58570911-58570930 | Msa0860080:intron | 45.0% | |
| ACAGCTGAATTCCAGGGAAT+GGG | - | chr5_4:58571007-58571026 | None:intergenic | 45.0% | |
| AACAGCTGAATTCCAGGGAA+TGG | - | chr5_4:58571008-58571027 | None:intergenic | 45.0% | |
| TTCCCTGGAATTCAGCTGTT+TGG | + | chr5_4:58571008-58571027 | Msa0860080:intron | 45.0% | |
| CACCAAACAGCTGAATTCCA+GGG | - | chr5_4:58571013-58571032 | None:intergenic | 45.0% | |
| TCAGAAAAACAAGCTACCCC+AGG | - | chr5_4:58571808-58571827 | None:intergenic | 45.0% | |
| ! | TGGCTTGTAAGGTTAGTGAG+AGG | + | chr5_4:58572056-58572075 | Msa0860080:three_prime_UTR | 45.0% |
| GGAGTAGCAGCACTTGGATT+AGG | + | chr5_4:58568708-58568727 | Msa0860080:CDS | 50.0% | |
| ! | TTTGAAAGCGTGTGCGCCAT+AGG | - | chr5_4:58568736-58568755 | None:intergenic | 50.0% |
| ! | CGGGAATCTTGGCTTTCTCT+GGG | + | chr5_4:58570265-58570284 | Msa0860080:CDS | 50.0% |
| GAAAGATGTCACTACCGCTG+TGG | + | chr5_4:58570426-58570445 | Msa0860080:intron | 50.0% | |
| ! | AGAGTGAGATGTGTCACTGC+CGG | + | chr5_4:58570621-58570640 | Msa0860080:intron | 50.0% |
| CAAAGCCTACGTGTCTGTGT+CGG | + | chr5_4:58570852-58570871 | Msa0860080:intron | 50.0% | |
| GCACCAAACAGCTGAATTCC+AGG | - | chr5_4:58571014-58571033 | None:intergenic | 50.0% | |
| !! | CAGCTGTTTGGTGCCATTGT+AGG | + | chr5_4:58571020-58571039 | Msa0860080:intron | 50.0% |
| TCAACCTTGGCTCCATTTGG+CGG | + | chr5_4:58571765-58571784 | Msa0860080:CDS | 50.0% | |
| AAAACCGCCAAATGGAGCCA+AGG | - | chr5_4:58571772-58571791 | None:intergenic | 50.0% | |
| AGATGTTGTAGCAGCACGGT+GGG | - | chr5_4:58571839-58571858 | None:intergenic | 50.0% | |
| TAGATGTTGTAGCAGCACGG+TGG | - | chr5_4:58571840-58571859 | None:intergenic | 50.0% | |
| ! | GCGGGAATCTTGGCTTTCTC+TGG | + | chr5_4:58570264-58570283 | Msa0860080:CDS | 55.0% |
| !! | AAGCACCGACACAGACACGT+AGG | - | chr5_4:58570860-58570879 | None:intergenic | 55.0% |
| GTGATTTGACGCCCATTCCC+TGG | + | chr5_4:58570993-58571012 | Msa0860080:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 58568561 | 58572106 | 58568561 | ID=Msa0860080;Name=Msa0860080 |
| chr5_4 | mRNA | 58568561 | 58572106 | 58568561 | ID=Msa0860080-mRNA-1;Parent=Msa0860080;Name=Msa0860080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=108|0.66|0.75|1|0.33|0.25|4|279|100 |
| chr5_4 | exon | 58568561 | 58568779 | 58568561 | ID=Msa0860080-mRNA-1:exon:17854;Parent=Msa0860080-mRNA-1 |
| chr5_4 | exon | 58568887 | 58568934 | 58568887 | ID=Msa0860080-mRNA-1:exon:17855;Parent=Msa0860080-mRNA-1 |
| chr5_4 | exon | 58570246 | 58570289 | 58570246 | ID=Msa0860080-mRNA-1:exon:17856;Parent=Msa0860080-mRNA-1 |
| chr5_4 | exon | 58571728 | 58572106 | 58571728 | ID=Msa0860080-mRNA-1:exon:17857;Parent=Msa0860080-mRNA-1 |
| chr5_4 | five_prime_UTR | 58568561 | 58568668 | 58568561 | ID=Msa0860080-mRNA-1:five_prime_utr;Parent=Msa0860080-mRNA-1 |
| chr5_4 | CDS | 58568669 | 58568779 | 58568669 | ID=Msa0860080-mRNA-1:cds;Parent=Msa0860080-mRNA-1 |
| chr5_4 | CDS | 58568887 | 58568934 | 58568887 | ID=Msa0860080-mRNA-1:cds;Parent=Msa0860080-mRNA-1 |
| chr5_4 | CDS | 58570246 | 58570289 | 58570246 | ID=Msa0860080-mRNA-1:cds;Parent=Msa0860080-mRNA-1 |
| chr5_4 | CDS | 58571728 | 58571827 | 58571728 | ID=Msa0860080-mRNA-1:cds;Parent=Msa0860080-mRNA-1 |
| chr5_4 | three_prime_UTR | 58571828 | 58572106 | 58571828 | ID=Msa0860080-mRNA-1:three_prime_utr;Parent=Msa0860080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
