Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651410 | XP_039689605.1 | 98.895 | 181 | 2 | 0 | 1 | 181 | 1 | 181 | 3.52e-128 | 367 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651410 | sp|P42856|ZB14_MAIZE | 69.291 | 127 | 39 | 0 | 55 | 181 | 2 | 128 | 1.54e-64 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000180 | Msa0651410 | 0.818410 | 1.989444e-52 | -8.615850e-47 |
| Msa0029280 | Msa0651410 | 0.803136 | 4.026719e-49 | -8.615850e-47 |
| Msa0030400 | Msa0651410 | 0.815039 | 1.134023e-51 | -8.615850e-47 |
| Msa0033930 | Msa0651410 | 0.809758 | 1.615341e-50 | -8.615850e-47 |
| Msa0034050 | Msa0651410 | 0.806084 | 9.767127e-50 | -8.615850e-47 |
| Msa0040550 | Msa0651410 | -0.807971 | 3.895288e-50 | -8.615850e-47 |
| Msa0044250 | Msa0651410 | 0.862817 | 3.872245e-64 | -8.615850e-47 |
| Msa0044320 | Msa0651410 | 0.826391 | 2.782992e-54 | -8.615850e-47 |
| Msa0072390 | Msa0651410 | 0.806099 | 9.694821e-50 | -8.615850e-47 |
| Msa0072710 | Msa0651410 | 0.821268 | 4.418718e-53 | -8.615850e-47 |
| Msa0078080 | Msa0651410 | 0.850680 | 1.451812e-60 | -8.615850e-47 |
| Msa0081840 | Msa0651410 | 0.826666 | 2.393588e-54 | -8.615850e-47 |
| Msa0090760 | Msa0651410 | 0.811088 | 8.339593e-51 | -8.615850e-47 |
| Msa0114700 | Msa0651410 | 0.812496 | 4.117885e-51 | -8.615850e-47 |
| Msa0618260 | Msa0651410 | 0.803397 | 3.554618e-49 | -8.615850e-47 |
| Msa0618490 | Msa0651410 | 0.819823 | 9.483880e-53 | -8.615850e-47 |
| Msa0625440 | Msa0651410 | 0.833242 | 5.969305e-56 | -8.615850e-47 |
| Msa0633720 | Msa0651410 | 0.810068 | 1.385396e-50 | -8.615850e-47 |
| Msa0647710 | Msa0651410 | 0.806970 | 6.349599e-50 | -8.615850e-47 |
| Msa0651410 | Msa0677840 | 0.802627 | 5.129346e-49 | -8.615850e-47 |
| Msa0651410 | Msa0690530 | 0.821269 | 4.417076e-53 | -8.615850e-47 |
| Msa0651410 | Msa0703150 | 0.800967 | 1.123880e-48 | -8.615850e-47 |
| Msa0651410 | Msa0705440 | 0.809366 | 1.960614e-50 | -8.615850e-47 |
| Msa0651410 | Msa0707270 | 0.821850 | 3.242362e-53 | -8.615850e-47 |
| Msa0651410 | Msa0750940 | 0.829283 | 5.613180e-55 | -8.615850e-47 |
| Msa0651410 | Msa0791120 | 0.808487 | 3.023429e-50 | -8.615850e-47 |
| Msa0651410 | Msa0797010 | 0.804803 | 1.812642e-49 | -8.615850e-47 |
| Msa0651410 | Msa0821030 | 0.806196 | 9.251198e-50 | -8.615850e-47 |
| Msa0651410 | Msa0832270 | 0.806797 | 6.909418e-50 | -8.615850e-47 |
| Msa0651410 | Msa0967670 | 0.819279 | 1.262282e-52 | -8.615850e-47 |
| Msa0651410 | Msa1024120 | 0.822620 | 2.148705e-53 | -8.615850e-47 |
| Msa0651410 | Msa1026880 | 0.804100 | 2.539862e-49 | -8.615850e-47 |
| Msa0651410 | Msa1029320 | 0.808829 | 2.555614e-50 | -8.615850e-47 |
| Msa0651410 | Msa1029430 | 0.812938 | 3.295367e-51 | -8.615850e-47 |
| Msa0651410 | Msa1038230 | 0.819060 | 1.415837e-52 | -8.615850e-47 |
| Msa0651410 | Msa1044790 | 0.804109 | 2.529876e-49 | -8.615850e-47 |
| Msa0651410 | Msa1056590 | 0.811651 | 6.293133e-51 | -8.615850e-47 |
| Msa0651410 | Msa1064210 | 0.806265 | 8.945009e-50 | -8.615850e-47 |
| Msa0651410 | Msa1067710 | 0.815724 | 7.984378e-52 | -8.615850e-47 |
| Msa0651410 | Msa1068290 | 0.811232 | 7.761895e-51 | -8.615850e-47 |
| Msa0651410 | Msa1073140 | 0.800143 | 1.654839e-48 | -8.615850e-47 |
| Msa0651410 | Msa1107950 | 0.846342 | 2.307326e-59 | -8.615850e-47 |
| Msa0651410 | Msa1120660 | 0.819226 | 1.298242e-52 | -8.615850e-47 |
| Msa0651410 | Msa1126910 | 0.801521 | 8.659482e-49 | -8.615850e-47 |
| Msa0651410 | Msa1143630 | 0.809536 | 1.802592e-50 | -8.615850e-47 |
| Msa0651410 | Msa1144420 | 0.821969 | 3.043102e-53 | -8.615850e-47 |
| Msa0651410 | Msa1145370 | 0.806838 | 6.771074e-50 | -8.615850e-47 |
| Msa0651410 | Msa1157030 | 0.811278 | 7.583949e-51 | -8.615850e-47 |
| Msa0651410 | Msa1179410 | 0.802231 | 6.187926e-49 | -8.615850e-47 |
| Msa0651410 | Msa1181730 | 0.803281 | 3.756367e-49 | -8.615850e-47 |
| Msa0651410 | Msa1183730 | 0.813366 | 2.654393e-51 | -8.615850e-47 |
| Msa0651410 | Msa1193430 | 0.803948 | 2.731396e-49 | -8.615850e-47 |
| Msa0651410 | Msa1221540 | 0.811257 | 7.664664e-51 | -8.615850e-47 |
| Msa0651410 | Msa1223600 | 0.802471 | 5.521794e-49 | -8.615850e-47 |
| Msa0651410 | Msa1226880 | 0.803443 | 3.476891e-49 | -8.615850e-47 |
| Msa0651410 | Msa1230190 | 0.808233 | 3.425755e-50 | -8.615850e-47 |
| Msa0651410 | Msa1272770 | 0.811076 | 8.386901e-51 | -8.615850e-47 |
| Msa0651410 | Msa1334020 | 0.819919 | 9.019467e-53 | -8.615850e-47 |
| Msa0651410 | Msa1341790 | 0.852856 | 3.506766e-61 | -8.615850e-47 |
| Msa0651410 | Msa1342080 | 0.816023 | 6.848195e-52 | -8.615850e-47 |
| Msa0651410 | Msa1349490 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0651410 | Msa1351370 | 0.811128 | 8.173228e-51 | -8.615850e-47 |
| Msa0651410 | Msa1356200 | 0.812327 | 4.482776e-51 | -8.615850e-47 |
| Msa0651410 | Msa1372680 | 0.804782 | 1.831403e-49 | -8.615850e-47 |
| Msa0651410 | Msa1374850 | 0.800365 | 1.491583e-48 | -8.615850e-47 |
| Msa0651410 | Msa1386020 | 0.803463 | 3.444481e-49 | -8.615850e-47 |
| Msa0651410 | Msa1393550 | 0.839362 | 1.657840e-57 | -8.615850e-47 |
| Msa0651410 | Msa1395640 | 0.815581 | 8.589066e-52 | -8.615850e-47 |
| Msa0651410 | Msa1400240 | 0.809730 | 1.637652e-50 | -8.615850e-47 |
| Msa0651410 | Msa1426310 | 0.838820 | 2.291897e-57 | -8.615850e-47 |
| Msa0651410 | Msa1432250 | 0.804532 | 2.064567e-49 | -8.615850e-47 |
| Msa0651410 | Msa1438780 | 0.823833 | 1.119214e-53 | -8.615850e-47 |
| Msa0651410 | Msa1449510 | 0.800191 | 1.618446e-48 | -8.615850e-47 |
| Msa0651410 | Msa1450850 | 0.807256 | 5.522905e-50 | -8.615850e-47 |
| Msa0651410 | Msa1451780 | 0.828773 | 7.460605e-55 | -8.615850e-47 |
| Msa0651410 | Msa1462600 | 0.801088 | 1.061825e-48 | -8.615850e-47 |
| Msa0127060 | Msa0651410 | 0.825111 | 5.602592e-54 | -8.615850e-47 |
| Msa0128070 | Msa0651410 | 0.829633 | 4.614609e-55 | -8.615850e-47 |
| Msa0143280 | Msa0651410 | 0.804591 | 2.006696e-49 | -8.615850e-47 |
| Msa0152640 | Msa0651410 | -0.801171 | 1.021259e-48 | -8.615850e-47 |
| Msa0164630 | Msa0651410 | 0.802271 | 6.071936e-49 | -8.615850e-47 |
| Msa0169320 | Msa0651410 | 0.818928 | 1.517437e-52 | -8.615850e-47 |
| Msa0173760 | Msa0651410 | 0.820080 | 8.284061e-53 | -8.615850e-47 |
| Msa0173850 | Msa0651410 | 0.801215 | 1.000271e-48 | -8.615850e-47 |
| Msa0184850 | Msa0651410 | 0.826449 | 2.695900e-54 | -8.615850e-47 |
| Msa0188110 | Msa0651410 | 0.802355 | 5.836250e-49 | -8.615850e-47 |
| Msa0199740 | Msa0651410 | 0.821807 | 3.317159e-53 | -8.615850e-47 |
| Msa0227960 | Msa0651410 | 0.811451 | 6.956707e-51 | -8.615850e-47 |
| Msa0373220 | Msa0651410 | 0.814359 | 1.603752e-51 | -8.615850e-47 |
| Msa0376480 | Msa0651410 | 0.821884 | 3.184562e-53 | -8.615850e-47 |
| Msa0400060 | Msa0651410 | -0.834520 | 2.858488e-56 | -8.615850e-47 |
| Msa0400900 | Msa0651410 | 0.807240 | 5.567198e-50 | -8.615850e-47 |
| Msa0459920 | Msa0651410 | 0.806275 | 8.903520e-50 | -8.615850e-47 |
| Msa0468020 | Msa0651410 | 0.813433 | 2.565574e-51 | -8.615850e-47 |
| Msa0471890 | Msa0651410 | 0.817964 | 2.508723e-52 | -8.615850e-47 |
| Msa0242290 | Msa0651410 | 0.811360 | 7.279691e-51 | -8.615850e-47 |
| Msa0272420 | Msa0651410 | 0.801404 | 9.150119e-49 | -8.615850e-47 |
| Msa0274890 | Msa0651410 | 0.808932 | 2.428769e-50 | -8.615850e-47 |
| Msa0292150 | Msa0651410 | 0.804837 | 1.783234e-49 | -8.615850e-47 |
| Msa0312570 | Msa0651410 | 0.818955 | 1.495814e-52 | -8.615850e-47 |
| Msa0313800 | Msa0651410 | 0.827961 | 1.171638e-54 | -8.615850e-47 |
| Msa0314980 | Msa0651410 | 0.818140 | 2.290049e-52 | -8.615850e-47 |
| Msa0315010 | Msa0651410 | 0.806728 | 7.144595e-50 | -8.615850e-47 |
| Msa0319710 | Msa0651410 | 0.812824 | 3.491011e-51 | -8.615850e-47 |
| Msa0327870 | Msa0651410 | 0.805362 | 1.384576e-49 | -8.615850e-47 |
| Msa0327900 | Msa0651410 | 0.818263 | 2.147990e-52 | -8.615850e-47 |
| Msa0347060 | Msa0651410 | 0.837320 | 5.572466e-57 | -8.615850e-47 |
| Msa0353040 | Msa0651410 | -0.809332 | 1.993824e-50 | -8.615850e-47 |
| Msa0516330 | Msa0651410 | 0.818774 | 1.644440e-52 | -8.615850e-47 |
| Msa0524830 | Msa0651410 | 0.805770 | 1.136846e-49 | -8.615850e-47 |
| Msa0553350 | Msa0651410 | 0.807008 | 6.234528e-50 | -8.615850e-47 |
| Msa0556070 | Msa0651410 | 0.804386 | 2.214810e-49 | -8.615850e-47 |
| Msa0556080 | Msa0651410 | 0.994718 | 1.334689e-209 | -8.615850e-47 |
| Msa0589600 | Msa0651410 | 0.809424 | 1.905182e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651410 | MtrunA17_Chr4g0043791 | 98.333 | 180 | 3 | 0 | 2 | 181 | 3 | 182 | 4.37e-131 | 364 |
| Msa0651410 | MtrunA17_Chr6g0460311 | 67.647 | 136 | 42 | 1 | 46 | 181 | 20 | 153 | 2.67e-67 | 202 |
| Msa0651410 | MtrunA17_Chr7g0255021 | 53.521 | 71 | 31 | 2 | 53 | 121 | 4 | 74 | 3.24e-17 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651410 | AT1G31160.1 | 70.225 | 178 | 48 | 2 | 9 | 181 | 10 | 187 | 5.19e-74 | 221 |
| Msa0651410 | AT3G56490.1 | 65.942 | 138 | 43 | 2 | 44 | 181 | 14 | 147 | 6.54e-65 | 196 |
| Msa0651410 | AT1G31160.2 | 64.103 | 117 | 37 | 2 | 9 | 120 | 10 | 126 | 8.68e-31 | 109 |
Find 61 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATCCATCTCTGAATTT+TGG | 0.116683 | 4_3:-58795504 | None:intergenic |
| TTCTTTCTCGGCTACTATTT+TGG | 0.146644 | 4_3:-58795806 | None:intergenic |
| CGGTTCCTTTCTCTCTTCTT+AGG | 0.195364 | 4_3:+58793903 | Msa0651410:CDS |
| TTACAACCTCACTCGTTTCT+AGG | 0.197311 | 4_3:+58793866 | Msa0651410:five_prime_UTR |
| ATTTATCTTGTCTCTGAAAT+AGG | 0.206802 | 4_3:+58796230 | Msa0651410:three_prime_UTR |
| TTGTTCATTGTTTGCAGCGC+TGG | 0.260695 | 4_3:-58795074 | None:intergenic |
| TGCTAGACATGGGGAGATAC+TGG | 0.286862 | 4_3:+58795765 | Msa0651410:CDS |
| TTTGCAGCGCTGGCGCTAAA+TGG | 0.329280 | 4_3:-58795064 | None:intergenic |
| TGTCAATCCTTGCTGATTCC+TGG | 0.330188 | 4_3:+58796045 | Msa0651410:three_prime_UTR |
| AACCTAAACTTATTCTTTGT+GGG | 0.346148 | 4_3:+58796120 | Msa0651410:three_prime_UTR |
| AGCATTAACAGCAGCTGCTT+TGG | 0.346160 | 4_3:-58795104 | None:intergenic |
| ATTTGACAAGATCATAAATA+AGG | 0.353101 | 4_3:+58795392 | Msa0651410:CDS |
| AAACCTAAACTTATTCTTTG+TGG | 0.382517 | 4_3:+58796119 | Msa0651410:three_prime_UTR |
| ATCAGCGATACCTTCTTTCT+CGG | 0.398686 | 4_3:-58795818 | None:intergenic |
| AACCCACAAAGAATAAGTTT+AGG | 0.405609 | 4_3:-58796122 | None:intergenic |
| ACAGGCTCCGGTTCATGTTC+TGG | 0.408262 | 4_3:+58795476 | Msa0651410:CDS |
| AGAGATGGATTAACAGAACT+TGG | 0.427247 | 4_3:+58795513 | Msa0651410:CDS |
| CATAAAACGAGAGCGAAAAC+TGG | 0.435458 | 4_3:+58796203 | Msa0651410:three_prime_UTR |
| TAGGTGGGAGACAGATGAAT+TGG | 0.451270 | 4_3:+58796009 | Msa0651410:CDS |
| CAGCTATTTCTAAGATCTCC+AGG | 0.451382 | 4_3:-58796063 | None:intergenic |
| TCTTCATATACAATGCTTGA+AGG | 0.456414 | 4_3:-58795420 | None:intergenic |
| TGTCAGGAACTACTCACAAT+TGG | 0.465151 | 4_3:+58793996 | Msa0651410:intron |
| AACTACCTGCGACATTGAAT+AGG | 0.476144 | 4_3:-58794078 | None:intergenic |
| GGAATGACCAGAACATGAAC+CGG | 0.476627 | 4_3:-58795483 | None:intergenic |
| TTGAATAGGAAGAACATAGT+TGG | 0.488856 | 4_3:-58794064 | None:intergenic |
| CTTAAGCAGATAGCTCAGTT+AGG | 0.498510 | 4_3:+58796268 | Msa0651410:three_prime_UTR |
| GTTTAATGTTGATACATTGT+TGG | 0.500439 | 4_3:-58795139 | None:intergenic |
| GGACATCAGTCCACAGGCTC+CGG | 0.500682 | 4_3:+58795464 | Msa0651410:CDS |
| CATTGTATATGAAGATGAAA+AGG | 0.504283 | 4_3:+58795428 | Msa0651410:CDS |
| TTCTTCCTATTCAATGTCGC+AGG | 0.509055 | 4_3:+58794073 | Msa0651410:CDS |
| CATCTGCACTTGCATGTCCT+AGG | 0.526980 | 4_3:+58795990 | Msa0651410:CDS |
| CTTCATATACAATGCTTGAA+GGG | 0.529749 | 4_3:-58795419 | None:intergenic |
| GTCATTCCAAAATTCAGAGA+TGG | 0.530580 | 4_3:+58795498 | Msa0651410:CDS |
| GCTGCTGTTAATGCTGATAG+TGG | 0.535440 | 4_3:+58795112 | Msa0651410:CDS |
| TCTAGGAACCATGGCAGCTA+CGG | 0.537131 | 4_3:+58793883 | Msa0651410:exon |
| CTGCACTTGCATGTCCTAGG+TGG | 0.538200 | 4_3:+58795993 | Msa0651410:CDS |
| TGTTACCTAAGAAGAGAGAA+AGG | 0.545840 | 4_3:-58793908 | None:intergenic |
| AGCTCAGTTAGGTGAGCTGA+GGG | 0.546466 | 4_3:+58796279 | Msa0651410:three_prime_UTR |
| AAAATAGTAGCCGAGAAAGA+AGG | 0.558191 | 4_3:+58795808 | Msa0651410:CDS |
| GAGAAAGAAGGTATCGCTGA+TGG | 0.560682 | 4_3:+58795820 | Msa0651410:CDS |
| GCTAGACATGGGGAGATACT+GGG | 0.563721 | 4_3:+58795766 | Msa0651410:CDS |
| GAAAGGAACCGTAGCTGCCA+TGG | 0.566043 | 4_3:-58793891 | None:intergenic |
| TTTCAGGCTGATGCTAGACA+TGG | 0.567488 | 4_3:+58795754 | Msa0651410:intron |
| AGTGCAGATGATACACACTT+TGG | 0.574867 | 4_3:-58795977 | None:intergenic |
| AGATCTTAGAAATAGCTGAA+TGG | 0.578452 | 4_3:+58796068 | Msa0651410:three_prime_UTR |
| AGACAGATGAATTGGCCACC+TGG | 0.582532 | 4_3:+58796017 | Msa0651410:CDS |
| TAGCTCAGTTAGGTGAGCTG+AGG | 0.584634 | 4_3:+58796278 | Msa0651410:three_prime_UTR |
| GAGATGGATTAACAGAACTT+GGG | 0.585175 | 4_3:+58795514 | Msa0651410:CDS |
| TGCACTTGCATGTCCTAGGT+GGG | 0.590386 | 4_3:+58795994 | Msa0651410:CDS |
| TTCAGGCTGATGCTAGACAT+GGG | 0.598386 | 4_3:+58795755 | Msa0651410:intron |
| GCAAGGATTGACATTCAACC+AGG | 0.602800 | 4_3:-58796035 | None:intergenic |
| GACTGATGTCCCGAAAAGCT+AGG | 0.605770 | 4_3:-58795452 | None:intergenic |
| AATTCATCTGTCTCCCACCT+AGG | 0.607223 | 4_3:-58796007 | None:intergenic |
| AGAACATGAACCGGAGCCTG+TGG | 0.626518 | 4_3:-58795474 | None:intergenic |
| TGGATTAACAGAACTTGGGA+AGG | 0.640825 | 4_3:+58795518 | Msa0651410:CDS |
| TCAGGCTGATGCTAGACATG+GGG | 0.647934 | 4_3:+58795756 | Msa0651410:intron |
| TTTCGTGTTGTCATCAACAG+TGG | 0.675033 | 4_3:+58795844 | Msa0651410:CDS |
| AAGATCTCCAGGAATCAGCA+AGG | 0.677777 | 4_3:-58796052 | None:intergenic |
| TCACTCGTTTCTAGGAACCA+TGG | 0.697647 | 4_3:+58793874 | Msa0651410:exon |
| AGGATTGACATTCAACCAGG+TGG | 0.710391 | 4_3:-58796032 | None:intergenic |
| ATGGTTCCTAGAAACGAGTG+AGG | 0.718741 | 4_3:-58793872 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACACTAATTTATTATATAA+GGG | + | chr4_3:58795598-58795617 | Msa0651410:intron | 10.0% |
| !! | GTACACTAATTTATTATATA+AGG | + | chr4_3:58795597-58795616 | Msa0651410:intron | 15.0% |
| !! | ACACTAATTTATTATATAAG+GGG | + | chr4_3:58795599-58795618 | Msa0651410:intron | 15.0% |
| !!! | TGAATTTTTTATGATCTGTA+AGG | + | chr4_3:58794116-58794135 | Msa0651410:intron | 20.0% |
| !!! | TTTCCAACTTTTATTGTTTT+AGG | - | chr4_3:58794174-58794193 | None:intergenic | 20.0% |
| !!! | CTTCAAGTTAAAATAAGTTA+TGG | + | chr4_3:58794399-58794418 | Msa0651410:intron | 20.0% |
| !! | ATGAAGACAAAAAAGATAAT+GGG | - | chr4_3:58794970-58794989 | None:intergenic | 20.0% |
| !!! | AGATTTAAAGTTTAAATGCA+CGG | + | chr4_3:58795257-58795276 | Msa0651410:intron | 20.0% |
| !! | AATATTGACATTGTAATTCT+AGG | - | chr4_3:58795298-58795317 | None:intergenic | 20.0% |
| !! | ACGAATAAAATAGAAACATT+GGG | - | chr4_3:58795364-58795383 | None:intergenic | 20.0% |
| !! | ATTTGACAAGATCATAAATA+AGG | + | chr4_3:58795392-58795411 | Msa0651410:CDS | 20.0% |
| !! | AAAGTAGCTAGAATTGATTT+CGG | - | chr4_3:58794484-58794503 | None:intergenic | 25.0% |
| !!! | TGGATAACCTTGTTTTTTAT+TGG | + | chr4_3:58794598-58794617 | Msa0651410:intron | 25.0% |
| ! | AACAAGTTAACAACTTACTT+CGG | - | chr4_3:58794665-58794684 | None:intergenic | 25.0% |
| !! | GTTGAACTTGAACAAATTTT+TGG | - | chr4_3:58794740-58794759 | None:intergenic | 25.0% |
| !!! | CTATTTCTAAAAATGTTGCT+TGG | + | chr4_3:58794795-58794814 | Msa0651410:intron | 25.0% |
| !!! | TAACAAGCTCTAAAAAAACT+TGG | - | chr4_3:58794908-58794927 | None:intergenic | 25.0% |
| ! | CATGAAGACAAAAAAGATAA+TGG | - | chr4_3:58794971-58794990 | None:intergenic | 25.0% |
| !!! | ATCTTTTTTGTCTTCATGTT+TGG | + | chr4_3:58794973-58794992 | Msa0651410:intron | 25.0% |
| ! | GTTTAATGTTGATACATTGT+TGG | - | chr4_3:58795142-58795161 | None:intergenic | 25.0% |
| ! | GACGAATAAAATAGAAACAT+TGG | - | chr4_3:58795365-58795384 | None:intergenic | 25.0% |
| ! | CATTGTATATGAAGATGAAA+AGG | + | chr4_3:58795428-58795447 | Msa0651410:CDS | 25.0% |
| ! | TCTATATGTACATTAACTCA+AGG | + | chr4_3:58795554-58795573 | Msa0651410:intron | 25.0% |
| !!! | TGTTAGCTTTGAGTTATTAT+TGG | + | chr4_3:58795672-58795691 | Msa0651410:intron | 25.0% |
| !!! | GTTAGCTTTGAGTTATTATT+GGG | + | chr4_3:58795673-58795692 | Msa0651410:intron | 25.0% |
| !! | AAAAGAAAATCTGCATTTTC+AGG | + | chr4_3:58795738-58795757 | Msa0651410:intron | 25.0% |
| ! | TGATTAGAAAAAAGACATAC+AGG | - | chr4_3:58795878-58795897 | None:intergenic | 25.0% |
| ! | ACAATTTCCATTGCTAATAA+TGG | + | chr4_3:58795900-58795919 | Msa0651410:intron | 25.0% |
| ! | AATAAGAAAAACGAGATTAG+TGG | - | chr4_3:58795949-58795968 | None:intergenic | 25.0% |
| ! | AAACCTAAACTTATTCTTTG+TGG | + | chr4_3:58796119-58796138 | Msa0651410:three_prime_UTR | 25.0% |
| ! | AACCTAAACTTATTCTTTGT+GGG | + | chr4_3:58796120-58796139 | Msa0651410:three_prime_UTR | 25.0% |
| !!! | ATTTATCTTGTCTCTGAAAT+AGG | + | chr4_3:58796230-58796249 | Msa0651410:three_prime_UTR | 25.0% |
| ! | TCTTGCTTTGAATTATTGTC+AGG | + | chr4_3:58793980-58793999 | Msa0651410:intron | 30.0% |
| TTGAATAGGAAGAACATAGT+TGG | - | chr4_3:58794067-58794086 | None:intergenic | 30.0% | |
| GTGCCTAAAACAATAAAAGT+TGG | + | chr4_3:58794168-58794187 | Msa0651410:intron | 30.0% | |
| TTAGTTCAACTGCGAAAAAT+TGG | + | chr4_3:58794551-58794570 | Msa0651410:intron | 30.0% | |
| AGGTTATCCAAACATGAATT+AGG | - | chr4_3:58794588-58794607 | None:intergenic | 30.0% | |
| ! | AAATTTGTTCAAGTTCAACC+AGG | + | chr4_3:58794741-58794760 | Msa0651410:intron | 30.0% |
| ! | TCTAAAAATGTTGCTTGGAT+CGG | + | chr4_3:58794800-58794819 | Msa0651410:intron | 30.0% |
| ! | ACTCAAAAGATCCTTTTCTT+AGG | - | chr4_3:58794829-58794848 | None:intergenic | 30.0% |
| GTGTGTAACTGCAAATATAA+AGG | + | chr4_3:58794865-58794884 | Msa0651410:intron | 30.0% | |
| !! | TTTAGAGCTTGTTAATAACC+AGG | + | chr4_3:58794914-58794933 | Msa0651410:intron | 30.0% |
| TATAACTTCAAAACAGATCC+TGG | - | chr4_3:58794935-58794954 | None:intergenic | 30.0% | |
| !! | AGTAGCTTTAGTTATTGACT+TGG | + | chr4_3:58794996-58795015 | Msa0651410:intron | 30.0% |
| TGGTGTGAATTCATGTTTAT+TGG | + | chr4_3:58795016-58795035 | Msa0651410:intron | 30.0% | |
| CTGTTAATACAATGCTTGAT+TGG | - | chr4_3:58795334-58795353 | None:intergenic | 30.0% | |
| CTTCATATACAATGCTTGAA+GGG | - | chr4_3:58795422-58795441 | None:intergenic | 30.0% | |
| TCTTCATATACAATGCTTGA+AGG | - | chr4_3:58795423-58795442 | None:intergenic | 30.0% | |
| ! | GTTAATCCATCTCTGAATTT+TGG | - | chr4_3:58795507-58795526 | None:intergenic | 30.0% |
| TTTCCTTACATAGTAGTAAC+AGG | + | chr4_3:58795699-58795718 | Msa0651410:intron | 30.0% | |
| TTCCTTACATAGTAGTAACA+GGG | + | chr4_3:58795700-58795719 | Msa0651410:intron | 30.0% | |
| TTCCATTGCTAATAATGGTA+TGG | + | chr4_3:58795905-58795924 | Msa0651410:intron | 30.0% | |
| TACCATACCATTATTAGCAA+TGG | - | chr4_3:58795910-58795929 | None:intergenic | 30.0% | |
| AGATCTTAGAAATAGCTGAA+TGG | + | chr4_3:58796068-58796087 | Msa0651410:three_prime_UTR | 30.0% | |
| AACCCACAAAGAATAAGTTT+AGG | - | chr4_3:58796125-58796144 | None:intergenic | 30.0% | |
| TGTTACCTAAGAAGAGAGAA+AGG | - | chr4_3:58793911-58793930 | None:intergenic | 35.0% | |
| AATCTGCGTTGTTAATGAGA+TGG | + | chr4_3:58794142-58794161 | Msa0651410:intron | 35.0% | |
| ATCTGCGTTGTTAATGAGAT+GGG | + | chr4_3:58794143-58794162 | Msa0651410:intron | 35.0% | |
| ATTGCATTTCAGTGCATGTT+TGG | + | chr4_3:58794240-58794259 | Msa0651410:intron | 35.0% | |
| !! | CGGAGGTGTAAAATTGATTT+TGG | - | chr4_3:58794464-58794483 | None:intergenic | 35.0% |
| !! | CACATTTCTGAGACTATGTT+TGG | - | chr4_3:58794517-58794536 | None:intergenic | 35.0% |
| TCTGCAACCTAATTCATGTT+TGG | + | chr4_3:58794578-58794597 | Msa0651410:intron | 35.0% | |
| TCAGCTGCCAATAAAAAACA+AGG | - | chr4_3:58794608-58794627 | None:intergenic | 35.0% | |
| AACTTACTTCGGAGAAACAA+AGG | - | chr4_3:58794654-58794673 | None:intergenic | 35.0% | |
| ATTAGACACGATGTAACTAC+TGG | + | chr4_3:58794685-58794704 | Msa0651410:intron | 35.0% | |
| !! | GCTCTAAAAAAACTTGGTGT+TGG | - | chr4_3:58794902-58794921 | None:intergenic | 35.0% |
| ! | GCATTTTGCTTACTTGTTTC+AGG | + | chr4_3:58795038-58795057 | Msa0651410:intron | 35.0% |
| !! | ATGAAAAGGTCCTAGCTTTT+CGG | + | chr4_3:58795442-58795461 | Msa0651410:CDS | 35.0% |
| GTCATTCCAAAATTCAGAGA+TGG | + | chr4_3:58795498-58795517 | Msa0651410:CDS | 35.0% | |
| !! | AGAGATGGATTAACAGAACT+TGG | + | chr4_3:58795513-58795532 | Msa0651410:CDS | 35.0% |
| !! | GAGATGGATTAACAGAACTT+GGG | + | chr4_3:58795514-58795533 | Msa0651410:CDS | 35.0% |
| ! | TTCTTTCTCGGCTACTATTT+TGG | - | chr4_3:58795809-58795828 | None:intergenic | 35.0% |
| AAAATAGTAGCCGAGAAAGA+AGG | + | chr4_3:58795808-58795827 | Msa0651410:CDS | 35.0% | |
| !! | CTCGTTTTTCTTATTCTGCT+AGG | + | chr4_3:58795954-58795973 | Msa0651410:intron | 35.0% |
| TTACAACCTCACTCGTTTCT+AGG | + | chr4_3:58793866-58793885 | Msa0651410:five_prime_UTR | 40.0% | |
| TGTCAGGAACTACTCACAAT+TGG | + | chr4_3:58793996-58794015 | Msa0651410:intron | 40.0% | |
| TTCTTCCTATTCAATGTCGC+AGG | + | chr4_3:58794073-58794092 | Msa0651410:CDS | 40.0% | |
| AACTACCTGCGACATTGAAT+AGG | - | chr4_3:58794081-58794100 | None:intergenic | 40.0% | |
| !!! | TCAGTGCATGTTTGGTTTTG+AGG | + | chr4_3:58794248-58794267 | Msa0651410:intron | 40.0% |
| ! | GTAGCTAGAATTGATTTCGG+AGG | - | chr4_3:58794481-58794500 | None:intergenic | 40.0% |
| TGGATCGGATACCTAAGAAA+AGG | + | chr4_3:58794815-58794834 | Msa0651410:intron | 40.0% | |
| !! | TGAAAAGGTCCTAGCTTTTC+GGG | + | chr4_3:58795443-58795462 | Msa0651410:CDS | 40.0% |
| TGGATTAACAGAACTTGGGA+AGG | + | chr4_3:58795518-58795537 | Msa0651410:CDS | 40.0% | |
| CTCCCTGTTACTACTATGTA+AGG | - | chr4_3:58795705-58795724 | None:intergenic | 40.0% | |
| !! | TTTCTCGGCTACTATTTTGG+CGG | - | chr4_3:58795806-58795825 | None:intergenic | 40.0% |
| ATCAGCGATACCTTCTTTCT+CGG | - | chr4_3:58795821-58795840 | None:intergenic | 40.0% | |
| TTTCGTGTTGTCATCAACAG+TGG | + | chr4_3:58795844-58795863 | Msa0651410:CDS | 40.0% | |
| GAAAAAAGACATACAGGCAC+TGG | - | chr4_3:58795872-58795891 | None:intergenic | 40.0% | |
| AGTGCAGATGATACACACTT+TGG | - | chr4_3:58795980-58795999 | None:intergenic | 40.0% | |
| !! | CAGCTATTTCTAAGATCTCC+AGG | - | chr4_3:58796066-58796085 | None:intergenic | 40.0% |
| ! | CAGTTTTCGCTCTCGTTTTA+TGG | - | chr4_3:58796205-58796224 | None:intergenic | 40.0% |
| CATAAAACGAGAGCGAAAAC+TGG | + | chr4_3:58796203-58796222 | Msa0651410:three_prime_UTR | 40.0% | |
| CTTAAGCAGATAGCTCAGTT+AGG | + | chr4_3:58796268-58796287 | Msa0651410:three_prime_UTR | 40.0% | |
| ATGGTTCCTAGAAACGAGTG+AGG | - | chr4_3:58793875-58793894 | None:intergenic | 45.0% | |
| ! | TCACTCGTTTCTAGGAACCA+TGG | + | chr4_3:58793874-58793893 | Msa0651410:exon | 45.0% |
| CGGTTCCTTTCTCTCTTCTT+AGG | + | chr4_3:58793903-58793922 | Msa0651410:CDS | 45.0% | |
| TTGAGTGTGTCTGCACTGTT+AGG | + | chr4_3:58794843-58794862 | Msa0651410:intron | 45.0% | |
| TTGTTCATTGTTTGCAGCGC+TGG | - | chr4_3:58795077-58795096 | None:intergenic | 45.0% | |
| AGCATTAACAGCAGCTGCTT+TGG | - | chr4_3:58795107-58795126 | None:intergenic | 45.0% | |
| GCTGCTGTTAATGCTGATAG+TGG | + | chr4_3:58795112-58795131 | Msa0651410:CDS | 45.0% | |
| GGAATGACCAGAACATGAAC+CGG | - | chr4_3:58795486-58795505 | None:intergenic | 45.0% | |
| TTTCAGGCTGATGCTAGACA+TGG | + | chr4_3:58795754-58795773 | Msa0651410:intron | 45.0% | |
| TTCAGGCTGATGCTAGACAT+GGG | + | chr4_3:58795755-58795774 | Msa0651410:intron | 45.0% | |
| !! | GAGAAAGAAGGTATCGCTGA+TGG | + | chr4_3:58795820-58795839 | Msa0651410:CDS | 45.0% |
| AATTCATCTGTCTCCCACCT+AGG | - | chr4_3:58796010-58796029 | None:intergenic | 45.0% | |
| TAGGTGGGAGACAGATGAAT+TGG | + | chr4_3:58796009-58796028 | Msa0651410:CDS | 45.0% | |
| AGGATTGACATTCAACCAGG+TGG | - | chr4_3:58796035-58796054 | None:intergenic | 45.0% | |
| GCAAGGATTGACATTCAACC+AGG | - | chr4_3:58796038-58796057 | None:intergenic | 45.0% | |
| !! | TGTCAATCCTTGCTGATTCC+TGG | + | chr4_3:58796045-58796064 | Msa0651410:three_prime_UTR | 45.0% |
| AAGATCTCCAGGAATCAGCA+AGG | - | chr4_3:58796055-58796074 | None:intergenic | 45.0% | |
| TCTAGGAACCATGGCAGCTA+CGG | + | chr4_3:58793883-58793902 | Msa0651410:exon | 50.0% | |
| TCACAGTCAACAACAGCACC+TGG | - | chr4_3:58794762-58794781 | None:intergenic | 50.0% | |
| GACTGATGTCCCGAAAAGCT+AGG | - | chr4_3:58795455-58795474 | None:intergenic | 50.0% | |
| !! | TTTTCGGGACATCAGTCCAC+AGG | + | chr4_3:58795458-58795477 | Msa0651410:CDS | 50.0% |
| TCAGGCTGATGCTAGACATG+GGG | + | chr4_3:58795756-58795775 | Msa0651410:intron | 50.0% | |
| TGCTAGACATGGGGAGATAC+TGG | + | chr4_3:58795765-58795784 | Msa0651410:CDS | 50.0% | |
| GCTAGACATGGGGAGATACT+GGG | + | chr4_3:58795766-58795785 | Msa0651410:CDS | 50.0% | |
| ! | TTTTGGCGGCATAGAGAAGC+TGG | - | chr4_3:58795792-58795811 | None:intergenic | 50.0% |
| CATCTGCACTTGCATGTCCT+AGG | + | chr4_3:58795990-58796009 | Msa0651410:CDS | 50.0% | |
| TGCACTTGCATGTCCTAGGT+GGG | + | chr4_3:58795994-58796013 | Msa0651410:CDS | 50.0% | |
| AGACAGATGAATTGGCCACC+TGG | + | chr4_3:58796017-58796036 | Msa0651410:CDS | 50.0% | |
| GAAAGGAACCGTAGCTGCCA+TGG | - | chr4_3:58793894-58793913 | None:intergenic | 55.0% | |
| !! | TTTGCAGCGCTGGCGCTAAA+TGG | - | chr4_3:58795067-58795086 | None:intergenic | 55.0% |
| AGAACATGAACCGGAGCCTG+TGG | - | chr4_3:58795477-58795496 | None:intergenic | 55.0% | |
| ACAGGCTCCGGTTCATGTTC+TGG | + | chr4_3:58795476-58795495 | Msa0651410:CDS | 55.0% | |
| CTGCACTTGCATGTCCTAGG+TGG | + | chr4_3:58795993-58796012 | Msa0651410:CDS | 55.0% | |
| GGACATCAGTCCACAGGCTC+CGG | + | chr4_3:58795464-58795483 | Msa0651410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 58793835 | 58796299 | 58793835 | ID=Msa0651410;Name=Msa0651410 |
| chr4_3 | mRNA | 58793835 | 58796299 | 58793835 | ID=Msa0651410-mRNA-1;Parent=Msa0651410;Name=Msa0651410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=58|1|1|1|1|1|6|256|181 |
| chr4_3 | exon | 58793835 | 58793924 | 58793835 | ID=Msa0651410-mRNA-1:exon:15638;Parent=Msa0651410-mRNA-1 |
| chr4_3 | exon | 58794002 | 58794094 | 58794002 | ID=Msa0651410-mRNA-1:exon:15639;Parent=Msa0651410-mRNA-1 |
| chr4_3 | exon | 58795060 | 58795146 | 58795060 | ID=Msa0651410-mRNA-1:exon:15640;Parent=Msa0651410-mRNA-1 |
| chr4_3 | exon | 58795392 | 58795539 | 58795392 | ID=Msa0651410-mRNA-1:exon:15641;Parent=Msa0651410-mRNA-1 |
| chr4_3 | exon | 58795760 | 58795877 | 58795760 | ID=Msa0651410-mRNA-1:exon:15642;Parent=Msa0651410-mRNA-1 |
| chr4_3 | exon | 58795976 | 58796299 | 58795976 | ID=Msa0651410-mRNA-1:exon:15643;Parent=Msa0651410-mRNA-1 |
| chr4_3 | five_prime_UTR | 58793835 | 58793892 | 58793835 | ID=Msa0651410-mRNA-1:five_prime_utr;Parent=Msa0651410-mRNA-1 |
| chr4_3 | CDS | 58793893 | 58793924 | 58793893 | ID=Msa0651410-mRNA-1:cds;Parent=Msa0651410-mRNA-1 |
| chr4_3 | CDS | 58794002 | 58794094 | 58794002 | ID=Msa0651410-mRNA-1:cds;Parent=Msa0651410-mRNA-1 |
| chr4_3 | CDS | 58795060 | 58795146 | 58795060 | ID=Msa0651410-mRNA-1:cds;Parent=Msa0651410-mRNA-1 |
| chr4_3 | CDS | 58795392 | 58795539 | 58795392 | ID=Msa0651410-mRNA-1:cds;Parent=Msa0651410-mRNA-1 |
| chr4_3 | CDS | 58795760 | 58795877 | 58795760 | ID=Msa0651410-mRNA-1:cds;Parent=Msa0651410-mRNA-1 |
| chr4_3 | CDS | 58795976 | 58796043 | 58795976 | ID=Msa0651410-mRNA-1:cds;Parent=Msa0651410-mRNA-1 |
| chr4_3 | three_prime_UTR | 58796044 | 58796299 | 58796044 | ID=Msa0651410-mRNA-1:three_prime_utr;Parent=Msa0651410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
