AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0347060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347060 MtrunA17_Chr3g0077271 90.789 304 22 3 5 306 1 300 0.0 533
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347060 AT4G24090.1 50.542 277 127 2 28 301 36 305 4.53e-85 258

Find 89 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGCTCTTAAACACTTTA+AGG 0.074175 3_1:-7934865 Msa0347060:CDS
GATTTGAAGAACGCACTTTC+TGG 0.183220 3_1:-7935017 Msa0347060:CDS
GCCCTTGTTGGCACTTTGTC+AGG 0.205650 3_1:-7928817 Msa0347060:CDS
ATGATAATCGGAAAATTAAT+TGG 0.244930 3_1:+7928256 None:intergenic
TCCGATTATCATAGCGTAAA+TGG 0.252998 3_1:-7928245 Msa0347060:three_prime_UTR
CATGCTGGAAATGGATAGTT+TGG 0.266410 3_1:-7927764 Msa0347060:three_prime_UTR
ACTGGGGTTGCAGCAGCTTT+TGG 0.298292 3_1:-7928655 Msa0347060:CDS
ATGCATGAGCTGAACTTTCT+TGG 0.305829 3_1:-7928018 Msa0347060:three_prime_UTR
AGATTATTTCATGCTGGAAA+TGG 0.309790 3_1:-7927773 Msa0347060:three_prime_UTR
AATAAGGCACTCGTAGAAAA+AGG 0.328136 3_1:+7927654 None:intergenic
GCATCTATCTCTGCCCTTGT+TGG 0.365023 3_1:-7928829 Msa0347060:CDS
TCCATTTACGCTATGATAAT+CGG 0.383249 3_1:+7928244 None:intergenic
TTGCATACAACTCAAAAGTA+TGG 0.383264 3_1:+7927853 None:intergenic
GCACAAAGCAGTCTAAAATA+AGG 0.388633 3_1:+7927638 None:intergenic
TGATCGGGATGAAGAGAGAT+TGG 0.389359 3_1:-7928866 Msa0347060:CDS
TTCGTATGTTGTGCATTGTT+TGG 0.390224 3_1:-7928730 Msa0347060:CDS
ACTTCAAGGAAACGCTTTCC+AGG 0.393652 3_1:-7934829 Msa0347060:intron
AGGAAGCGTAAATCTAATAA+TGG 0.401341 3_1:+7935142 None:intergenic
CCCTTGTTGGCACTTTGTCA+GGG 0.409622 3_1:-7928816 Msa0347060:CDS
AATATTAGAAGTGTTTGAAA+AGG 0.416395 3_1:-7928070 Msa0347060:three_prime_UTR
ATCATCCAAGTTTCTCCTTA+CGG 0.436352 3_1:+7928690 None:intergenic
CGCTCTTTGTTGCTAAATGC+GGG 0.443266 3_1:-7928937 Msa0347060:CDS
CAGAGAGAAGCAGCTGAGTT+GGG 0.445724 3_1:+7928764 None:intergenic
AGCAAAGTATTCAGAGAGAA+TGG 0.446842 3_1:-7927902 Msa0347060:three_prime_UTR
ACAGAGAGAAGCAGCTGAGT+TGG 0.447865 3_1:+7928763 None:intergenic
CAAGAAGTGGTCCAGCGCTT+AGG 0.448672 3_1:+7928439 None:intergenic
TGAAGAACGAGGTGCATTCA+TGG 0.449382 3_1:-7928908 Msa0347060:CDS
AAAGCTTATTAGCGTATGCC+TGG 0.453590 3_1:-7928404 Msa0347060:CDS
ATATTAGAAGTGTTTGAAAA+GGG 0.465590 3_1:-7928069 Msa0347060:three_prime_UTR
GAAAAGTGAAGAAGTTGATC+GGG 0.470593 3_1:-7928881 Msa0347060:CDS
AGCTGAACTTTCTTGGAAGA+GGG 0.470679 3_1:-7928011 Msa0347060:three_prime_UTR
GATGATGCTCAGCTTAAGAC+TGG 0.472044 3_1:-7928673 Msa0347060:CDS
ATGCTGGAAATGGATAGTTT+GGG 0.472461 3_1:-7927763 Msa0347060:three_prime_UTR
TCTGAATACTTTGCTGAGGC+AGG 0.475212 3_1:+7927910 None:intergenic
CTATGCTGCATGACTACAAT+GGG 0.476845 3_1:-7928043 Msa0347060:three_prime_UTR
CGTAAATCTAATAATGGAAG+TGG 0.481151 3_1:+7935148 None:intergenic
GAGCTGAACTTTCTTGGAAG+AGG 0.484465 3_1:-7928012 Msa0347060:three_prime_UTR
GTTCTCAGATTATTTCATGC+TGG 0.485230 3_1:-7927779 Msa0347060:three_prime_UTR
GGTGGCCTGAGTGAAGCATA+TGG 0.489258 3_1:+7928789 None:intergenic
ATTCAGAGAGAATGGAAGAG+AGG 0.496321 3_1:-7927894 Msa0347060:three_prime_UTR
GATTACACTCAACAACTTCA+AGG 0.499214 3_1:-7934843 Msa0347060:CDS
GAAGAACGAGGTGCATTCAT+GGG 0.509604 3_1:-7928907 Msa0347060:CDS
CCATGTCTTAATCAGGACAT+TGG 0.510699 3_1:-7927690 Msa0347060:three_prime_UTR
GAACGCACTTTCTGGAATGA+TGG 0.511508 3_1:-7935009 Msa0347060:CDS
AACAAAGGAGAATGAGAAGG+AGG 0.522216 3_1:+7935122 None:intergenic
GAGAAGCAGCTGAGTTGGGT+TGG 0.522960 3_1:+7928768 None:intergenic
GCCCTGACAAAGTGCCAACA+AGG 0.524369 3_1:+7928815 None:intergenic
AAGCAGCTGAGTTGGGTTGG+TGG 0.530246 3_1:+7928771 None:intergenic
GTGGCCTGAGTGAAGCATAT+GGG 0.535009 3_1:+7928790 None:intergenic
TCCTGATTAAGACATGGAAA+AGG 0.540446 3_1:+7927696 None:intergenic
GGTCTTGCAATCCTAAGCGC+TGG 0.540628 3_1:-7928450 Msa0347060:CDS
TGAAAAGTGAAGAAGTTGAT+CGG 0.542077 3_1:-7928882 Msa0347060:CDS
ATTAACAAAGGAGAATGAGA+AGG 0.542089 3_1:+7935119 None:intergenic
AACGCACTTTCTGGAATGAT+GGG 0.549369 3_1:-7935008 Msa0347060:CDS
CAATTGATAAAACACGTTAG+CGG 0.555580 3_1:-7928284 Msa0347060:exon
CAGAGAGAATGGAAGAGAGG+AGG 0.557632 3_1:-7927891 Msa0347060:three_prime_UTR
CACATAAATAGTTCCATCCC+AGG 0.559029 3_1:+7928386 None:intergenic
AGCAATCTCAACTCTTTGAG+AGG 0.560228 3_1:+7934920 None:intergenic
TCGAAGTTCAGTTCAAGAAG+TGG 0.560534 3_1:+7928426 None:intergenic
ATATACCGTAAGGAGAAACT+TGG 0.564974 3_1:-7928695 Msa0347060:CDS
TTAGAAGTGTTTGAAAAGGG+AGG 0.572869 3_1:-7928066 Msa0347060:three_prime_UTR
TACGTATCCCTTTGCCGCTG+CGG 0.575502 3_1:-7935215 None:intergenic
ACGCTCTTTGTTGCTAAATG+CGG 0.580608 3_1:-7928938 Msa0347060:CDS
ATGATGCTCAGCTTAAGACT+GGG 0.594958 3_1:-7928672 Msa0347060:CDS
AACTCAGCTGCTTCTCTCTG+TGG 0.595669 3_1:-7928761 Msa0347060:CDS
GCTGAACTTTCTTGGAAGAG+GGG 0.596838 3_1:-7928010 Msa0347060:three_prime_UTR
GCTATGCTGCATGACTACAA+TGG 0.600401 3_1:-7928044 Msa0347060:three_prime_UTR
CCAATGTCCTGATTAAGACA+TGG 0.601846 3_1:+7927690 None:intergenic
GCTCCCCATATGCTTCACTC+AGG 0.614386 3_1:-7928794 Msa0347060:CDS
AAGCTTATTAGCGTATGCCT+GGG 0.615492 3_1:-7928403 Msa0347060:CDS
ATTTACGTTTGAAATCACTA+CGG 0.616304 3_1:+7928110 None:intergenic
TGATTAAGACATGGAAAAGG+AGG 0.619717 3_1:+7927699 None:intergenic
TTATTAGCGTATGCCTGGGA+TGG 0.620264 3_1:-7928399 Msa0347060:CDS
GGATGAAGAGAGATTGGAGT+CGG 0.627110 3_1:-7928860 Msa0347060:CDS
TCTCTCTGAATACTTTGCTG+AGG 0.629890 3_1:+7927906 None:intergenic
GTATCCCTTTGCCGCTGCGG+AGG 0.630310 3_1:-7935212 None:intergenic
TTCTTTCTTATCCTCCGCAG+CGG 0.631983 3_1:+7935201 None:intergenic
CTGGAAATGGATAGTTTGGG+AGG 0.633880 3_1:-7927760 Msa0347060:three_prime_UTR
AAGTCAAAGAGAAATTTCAG+AGG 0.639606 3_1:-7928986 Msa0347060:CDS
TCTTTGTTGCTAAATGCGGG+AGG 0.641623 3_1:-7928934 Msa0347060:CDS
AAGAACGAGGTGCATTCATG+GGG 0.641964 3_1:-7928906 Msa0347060:CDS
GAAGACTATACTCACCACAT+TGG 0.647884 3_1:-7928144 Msa0347060:three_prime_UTR
TGGCCTGAGTGAAGCATATG+GGG 0.653318 3_1:+7928791 None:intergenic
CAGCAGCAGCAAGAACTCAG+AGG 0.653485 3_1:-7935048 Msa0347060:CDS
AGAGGCAAAAGCTATGCTTG+AGG 0.674852 3_1:-7928968 Msa0347060:CDS
CCCTGACAAAGTGCCAACAA+GGG 0.676499 3_1:+7928816 None:intergenic
CGGCATGCAACTTTCCAATG+TGG 0.695904 3_1:+7928130 None:intergenic
GCGGGAGGTGCTGAAGAACG+AGG 0.698522 3_1:-7928919 Msa0347060:CDS
TGATGCTCAGCTTAAGACTG+GGG 0.707538 3_1:-7928671 Msa0347060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAGAATTATATTTATAATTA+CGG + chr3_1:7928094-7928113 None:intergenic 10.0%
!!! TTAATAATAAAGTGATATTT+TGG + chr3_1:7928587-7928606 None:intergenic 10.0%
!!! ATGAATTCTAAAAATTAAAA+TGG - chr3_1:7929123-7929142 Msa0347060:intron 10.0%
!!! ATTGTATTATTTTAATACAA+TGG - chr3_1:7929619-7929638 Msa0347060:intron 10.0%
!! GAGAATTATATTTATAATTA+CGG + chr3_1:7928094-7928113 None:intergenic 10.0%
!!! TTAATAATAAAGTGATATTT+TGG + chr3_1:7928587-7928606 None:intergenic 10.0%
!! TTGACATAGAATTAATTAAT+AGG - chr3_1:7928043-7928062 Msa0347060:three_prime_UTR 15.0%
!!! AACTTTAAAAGCTAAATTAT+AGG - chr3_1:7928488-7928507 Msa0347060:intron 15.0%
!!! ACAACTTTAAAATAAATTGT+GGG + chr3_1:7928682-7928701 None:intergenic 15.0%
!! AAAAATATATTTACATCGAA+GGG + chr3_1:7929271-7929290 None:intergenic 15.0%
!! TACATTTAGATTTATTATAC+AGG - chr3_1:7929445-7929464 Msa0347060:intron 15.0%
!!! ATAAAATTTTCAAGTGTATT+TGG + chr3_1:7930218-7930237 None:intergenic 15.0%
!! AAGATTATTGTTAAAACTAA+AGG + chr3_1:7930400-7930419 None:intergenic 15.0%
!! ACTAAATTATAATTCATATC+AGG - chr3_1:7931146-7931165 Msa0347060:intron 15.0%
!!! TAAATTTAATTTAGCTTTGA+TGG + chr3_1:7931425-7931444 None:intergenic 15.0%
!! ATCAAAGCTAAATTAAATTT+AGG - chr3_1:7931424-7931443 Msa0347060:intron 15.0%
!!! AACTTTTTTAAACAAAAGTA+TGG + chr3_1:7931502-7931521 None:intergenic 15.0%
!! TTGACATAGAATTAATTAAT+AGG - chr3_1:7928043-7928062 Msa0347060:three_prime_UTR 15.0%
!!! AACTTTAAAAGCTAAATTAT+AGG - chr3_1:7928488-7928507 Msa0347060:intron 15.0%
!! AATAAATAAAATGTTAAGAG+AGG + chr3_1:7933516-7933535 None:intergenic 15.0%
!!! AATGATTATCATTTTTTGTT+TGG + chr3_1:7934650-7934669 None:intergenic 15.0%
!!! TGAAACGTTTTAATTAACAA+AGG + chr3_1:7927710-7927729 None:intergenic 20.0%
!! CTCAATAAAATAAACAAGAA+AGG - chr3_1:7928111-7928130 Msa0347060:three_prime_UTR 20.0%
!! TCTATCAAATTGTGTAATAA+GGG - chr3_1:7928335-7928354 Msa0347060:CDS 20.0%
!!! AACTTTAAAATAAATTGTGG+GGG + chr3_1:7928680-7928699 None:intergenic 20.0%
!!! CAACTTTAAAATAAATTGTG+GGG + chr3_1:7928681-7928700 None:intergenic 20.0%
!!! CACAACTTTAAAATAAATTG+TGG + chr3_1:7928683-7928702 None:intergenic 20.0%
!!! AAATTTTCACAATCTATGTT+GGG - chr3_1:7929204-7929223 Msa0347060:intron 20.0%
!! AAAATATATTTACATCGAAG+GGG + chr3_1:7929270-7929289 None:intergenic 20.0%
!! GAAAAATATATTTACATCGA+AGG + chr3_1:7929272-7929291 None:intergenic 20.0%
!! AAACCTATGATAATATATCA+TGG + chr3_1:7929375-7929394 None:intergenic 20.0%
!! CTAGTGCATAATATAAAAAA+TGG - chr3_1:7929881-7929900 Msa0347060:intron 20.0%
!! ATTAGAAATACACCAAAATT+AGG - chr3_1:7930154-7930173 Msa0347060:intron 20.0%
!! TAATTCTCTACCAATTATAT+TGG + chr3_1:7930335-7930354 None:intergenic 20.0%
!!! AAACTAAAGGTTTTTAATAG+CGG + chr3_1:7930387-7930406 None:intergenic 20.0%
!! ATTAAATGTTACTAAGTAGA+TGG + chr3_1:7930448-7930467 None:intergenic 20.0%
!!! ATGATTAATGATTTTACTGT+TGG + chr3_1:7930547-7930566 None:intergenic 20.0%
!! AGTATTGTATTGAATATGTT+GGG + chr3_1:7930638-7930657 None:intergenic 20.0%
!!! AAGTTTTACTTTCAAAATGT+GGG + chr3_1:7931058-7931077 None:intergenic 20.0%
!!! AAAGTTTTACTTTCAAAATG+TGG + chr3_1:7931059-7931078 None:intergenic 20.0%
!! TGAAACTATAATTCTTACAA+AGG + chr3_1:7931377-7931396 None:intergenic 20.0%
!!! AAATTAAATTTAGGATTGAC+AGG - chr3_1:7931433-7931452 Msa0347060:intron 20.0%
!! TTTAAAAAAGTTCCATTGTA+GGG - chr3_1:7931510-7931529 Msa0347060:intron 20.0%
!! ATTATATGTTAGTAAATGAG+AGG - chr3_1:7931578-7931597 Msa0347060:intron 20.0%
!! CTCAATAAAATAAACAAGAA+AGG - chr3_1:7928111-7928130 Msa0347060:three_prime_UTR 20.0%
!! TCTATCAAATTGTGTAATAA+GGG - chr3_1:7928335-7928354 Msa0347060:CDS 20.0%
!!! ATGCCTTTTTTTTTTTTTTG+TGG - chr3_1:7932072-7932091 Msa0347060:intron 20.0%
!!! TGATTTTCAAAGTAAAGTAT+TGG + chr3_1:7932831-7932850 None:intergenic 20.0%
!!! AATACTTTACTTTGAAAATC+AGG - chr3_1:7932830-7932849 Msa0347060:intron 20.0%
!!! TGACAAATTTTAAAGAGAAA+CGG - chr3_1:7932976-7932995 Msa0347060:intron 20.0%
!! ATTAATAAAATTAAGCAACG+TGG - chr3_1:7933282-7933301 Msa0347060:intron 20.0%
!! TTAATAAAATTAAGCAACGT+GGG - chr3_1:7933283-7933302 Msa0347060:intron 20.0%
!! AAATATTAGAGTAATCCTAT+GGG + chr3_1:7933342-7933361 None:intergenic 20.0%
!! AAAATATTAGAGTAATCCTA+TGG + chr3_1:7933343-7933362 None:intergenic 20.0%
!! ATGATAATCGGAAAATTAAT+TGG + chr3_1:7934561-7934580 None:intergenic 20.0%
!!! AATATTAGAAGTGTTTGAAA+AGG - chr3_1:7934744-7934763 Msa0347060:intron 20.0%
!!! ATATTAGAAGTGTTTGAAAA+GGG - chr3_1:7934745-7934764 Msa0347060:intron 20.0%
! ATTACACAATTTGATAGAGT+TGG + chr3_1:7928333-7928352 None:intergenic 25.0%
! CTCTATCAAATTGTGTAATA+AGG - chr3_1:7928334-7928353 Msa0347060:CDS 25.0%
! CTATCAAATTGTGTAATAAG+GGG - chr3_1:7928336-7928355 Msa0347060:CDS 25.0%
!!! GATGCCTTTTTTTTTTTTTG+TGG - chr3_1:7928358-7928377 Msa0347060:CDS 25.0%
! TCCTCCACAAAAAAAAAAAA+AGG + chr3_1:7928365-7928384 None:intergenic 25.0%
! TACTGAGTCAAATATATAGA+AGG + chr3_1:7928432-7928451 None:intergenic 25.0%
! AAATAATTGCAACGGTAAAA+TGG + chr3_1:7928456-7928475 None:intergenic 25.0%
!!! CTTTTAAAGTTGTATCAGTT+AGG + chr3_1:7928479-7928498 None:intergenic 25.0%
! AATTTGATACACTAGAATGT+CGG - chr3_1:7928782-7928801 Msa0347060:CDS 25.0%
!!! ATTTTTAGAATTCATCCCTA+TGG + chr3_1:7929118-7929137 None:intergenic 25.0%
! ATAGATTGTGAAAATTTGCA+AGG + chr3_1:7929201-7929220 None:intergenic 25.0%
!! CAAATTTTCACAATCTATGT+TGG - chr3_1:7929203-7929222 Msa0347060:intron 25.0%
! AATACAAAAATTGAGAGTGA+TGG + chr3_1:7929233-7929252 None:intergenic 25.0%
!! ATCACTCTCAATTTTTGTAT+TGG - chr3_1:7929232-7929251 Msa0347060:intron 25.0%
! AAATATATTTACATCGAAGG+GGG + chr3_1:7929269-7929288 None:intergenic 25.0%
! CATCCATGATATATTATCAT+AGG - chr3_1:7929369-7929388 Msa0347060:intron 25.0%
! ATTTATTATACAGGTCTACT+TGG - chr3_1:7929454-7929473 Msa0347060:intron 25.0%
! ATTTATATTTACCCAATGTG+GGG + chr3_1:7929502-7929521 None:intergenic 25.0%
! GATTTATATTTACCCAATGT+GGG + chr3_1:7929503-7929522 None:intergenic 25.0%
! TGATTTATATTTACCCAATG+TGG + chr3_1:7929504-7929523 None:intergenic 25.0%
!!! AAGATGTCACCATTATTTTA+AGG - chr3_1:7929651-7929670 Msa0347060:intron 25.0%
! TGAGATTCACCTTAAAATAA+TGG + chr3_1:7929663-7929682 None:intergenic 25.0%
!! TATGTATTTTCATGCTTCAA+TGG - chr3_1:7929826-7929845 Msa0347060:intron 25.0%
!!! GATAATTTTGAGCTTTGTTT+GGG + chr3_1:7930028-7930047 None:intergenic 25.0%
! GTTATTTACTCTATGAGATT+TGG + chr3_1:7930050-7930069 None:intergenic 25.0%
!! TGTATACAAGTACCTAATTT+TGG + chr3_1:7930169-7930188 None:intergenic 25.0%
! CAACATCTATCCAATATAAT+TGG - chr3_1:7930322-7930341 Msa0347060:intron 25.0%
!! GAGTATTGTATTGAATATGT+TGG + chr3_1:7930639-7930658 None:intergenic 25.0%
!! CTTACAACAAAGTTTGATTT+CGG - chr3_1:7930759-7930778 Msa0347060:intron 25.0%
! TAAAAGAAAATGAAAGAGCT+AGG + chr3_1:7930886-7930905 None:intergenic 25.0%
! ATTTATGACATGGTAGATTA+GGG + chr3_1:7930929-7930948 None:intergenic 25.0%
!! AGTTTTACTTTCAAAATGTG+GGG + chr3_1:7931057-7931076 None:intergenic 25.0%
! TATAATTCATATCAGGAACA+TGG - chr3_1:7931153-7931172 Msa0347060:intron 25.0%
!! GTTAATTTGAAACTCACTTT+AGG + chr3_1:7931208-7931227 None:intergenic 25.0%
! TCACCTCCTATAAATATATA+GGG + chr3_1:7931294-7931313 None:intergenic 25.0%
! TTCACCTCCTATAAATATAT+AGG + chr3_1:7931295-7931314 None:intergenic 25.0%
! TCTTACAAAGGAAAAATCAT+GGG + chr3_1:7931365-7931384 None:intergenic 25.0%
! TTCTTACAAAGGAAAAATCA+TGG + chr3_1:7931366-7931385 None:intergenic 25.0%
! GTTTAAAAAAGTTCCATTGT+AGG - chr3_1:7931509-7931528 Msa0347060:intron 25.0%
! TTAAAAAAGTTCCATTGTAG+GGG - chr3_1:7931511-7931530 Msa0347060:intron 25.0%
! ATTACACAATTTGATAGAGT+TGG + chr3_1:7928333-7928352 None:intergenic 25.0%
! CTCTATCAAATTGTGTAATA+AGG - chr3_1:7928334-7928353 Msa0347060:CDS 25.0%
! CTATCAAATTGTGTAATAAG+GGG - chr3_1:7928336-7928355 Msa0347060:CDS 25.0%
! CCTCCACAAAAAAAAAAAAA+AGG + chr3_1:7928364-7928383 None:intergenic 25.0%
!!! CCTTTTTTTTTTTTTTGTGG+AGG - chr3_1:7932075-7932094 Msa0347060:intron 25.0%
! TACTGAGTCAAATATATAGA+AGG + chr3_1:7928432-7928451 None:intergenic 25.0%
! AAATAATTGCAACGGTAAAA+TGG + chr3_1:7928456-7928475 None:intergenic 25.0%
!!! CTTTTAAAGTTGTATCAGTT+AGG + chr3_1:7928479-7928498 None:intergenic 25.0%
! ATTTAGTTAGAATAATGGCA+TGG + chr3_1:7932641-7932660 None:intergenic 25.0%
! ACGCTATTTAGTTAGAATAA+TGG + chr3_1:7932646-7932665 None:intergenic 25.0%
!!! TTTTCAAAGTAAAGTATTGG+AGG + chr3_1:7932828-7932847 None:intergenic 25.0%
! AGAAAATAGATAGTAGTAAG+TGG - chr3_1:7933086-7933105 Msa0347060:intron 25.0%
! AAAGTTTATCCTGAATGAAA+GGG + chr3_1:7933402-7933421 None:intergenic 25.0%
! TAAAGTTTATCCTGAATGAA+AGG + chr3_1:7933403-7933422 None:intergenic 25.0%
!!! AAAAAGTACTTATGATCATC+TGG + chr3_1:7933703-7933722 None:intergenic 25.0%
!! GTGTTTTATCAATTGGAAAA+GGG + chr3_1:7934525-7934544 None:intergenic 25.0%
!! ATTTACGTTTGAAATCACTA+CGG + chr3_1:7934707-7934726 None:intergenic 25.0%
! CGTAAATCTAATAATGGAAG+TGG + chr3_1:7927669-7927688 None:intergenic 30.0%
! AGGAAGCGTAAATCTAATAA+TGG + chr3_1:7927675-7927694 None:intergenic 30.0%
ATTAACAAAGGAGAATGAGA+AGG + chr3_1:7927698-7927717 None:intergenic 30.0%
ACTTGCTCTTAAACACTTTA+AGG - chr3_1:7927949-7927968 Msa0347060:three_prime_UTR 30.0%
!! ACGTTCTTGCTTTAAAATGT+TGG - chr3_1:7928016-7928035 Msa0347060:three_prime_UTR 30.0%
ACAAGAAAGGAAGAACTTAT+CGG - chr3_1:7928124-7928143 Msa0347060:three_prime_UTR 30.0%
!!! GCCTTTTTTTTTTTTTGTGG+AGG - chr3_1:7928361-7928380 Msa0347060:CDS 30.0%
GAGTCAAATATATAGAAGGA+CGG + chr3_1:7928428-7928447 None:intergenic 30.0%
CAGTTAGGAAATAATTGCAA+CGG + chr3_1:7928464-7928483 None:intergenic 30.0%
CGTTGCAATTAATCAATACT+TGG + chr3_1:7928519-7928538 None:intergenic 30.0%
AGATTTACCTATATGAGTGT+TGG + chr3_1:7928989-7929008 None:intergenic 30.0%
ATTTAATTCTCTCCTATGTG+GGG + chr3_1:7929424-7929443 None:intergenic 30.0%
GATTTAATTCTCTCCTATGT+GGG + chr3_1:7929425-7929444 None:intergenic 30.0%
AGATTTAATTCTCTCCTATG+TGG + chr3_1:7929426-7929445 None:intergenic 30.0%
TTTATATTTACCCAATGTGG+GGG + chr3_1:7929501-7929520 None:intergenic 30.0%
!!! TGTGTTATTTTTCCCAATGT+GGG + chr3_1:7929580-7929599 None:intergenic 30.0%
!!! ATGTGTTATTTTTCCCAATG+TGG + chr3_1:7929581-7929600 None:intergenic 30.0%
AAAATAATGGTGACATCTTG+TGG + chr3_1:7929650-7929669 None:intergenic 30.0%
AAAATTTCATGAGAGTGACT+TGG + chr3_1:7929958-7929977 None:intergenic 30.0%
!!! GGATAATTTTGAGCTTTGTT+TGG + chr3_1:7930029-7930048 None:intergenic 30.0%
! TTTGGTGTATTTCTAATGCT+AGG + chr3_1:7930151-7930170 None:intergenic 30.0%
GAACTCAATAACTAATGTAG+AGG - chr3_1:7930577-7930596 Msa0347060:intron 30.0%
ACACAAAATCAAGATTTGTG+AGG - chr3_1:7930674-7930693 Msa0347060:intron 30.0%
ATCAAGATTTGTGAGGTATA+TGG - chr3_1:7930681-7930700 Msa0347060:intron 30.0%
TGATTTCGGAAGAATATGTT+TGG - chr3_1:7930773-7930792 Msa0347060:intron 30.0%
GATTTCGGAAGAATATGTTT+GGG - chr3_1:7930774-7930793 Msa0347060:intron 30.0%
! TACCAATTTTGAATCATCCA+CGG - chr3_1:7930836-7930855 Msa0347060:intron 30.0%
GATTTATGACATGGTAGATT+AGG + chr3_1:7930930-7930949 None:intergenic 30.0%
TCTACCATGTCATAAATCAA+CGG - chr3_1:7930932-7930951 Msa0347060:intron 30.0%
! GGCAAAGGTTTTTATAGTAA+TGG + chr3_1:7931026-7931045 None:intergenic 30.0%
! GTTTTACTTTCAAAATGTGG+GGG + chr3_1:7931056-7931075 None:intergenic 30.0%
ATCTGTATCTATATTGAGCA+AGG + chr3_1:7931126-7931145 None:intergenic 30.0%
TCCTTCCCCTATATATTTAT+AGG - chr3_1:7931285-7931304 Msa0347060:intron 30.0%
TCCTATAAATATATAGGGGA+AGG + chr3_1:7931289-7931308 None:intergenic 30.0%
TTCCCCTATATATTTATAGG+AGG - chr3_1:7931288-7931307 Msa0347060:intron 30.0%
CACCTCCTATAAATATATAG+GGG + chr3_1:7931293-7931312 None:intergenic 30.0%
TTTATTTGCGCATATATGTG+TGG - chr3_1:7931321-7931340 Msa0347060:intron 30.0%
! TAAATTTAGGATTGACAGGT+TGG - chr3_1:7931437-7931456 Msa0347060:intron 30.0%
ACAAGAAAGGAAGAACTTAT+CGG - chr3_1:7928124-7928143 Msa0347060:three_prime_UTR 30.0%
GAGTCAAATATATAGAAGGA+CGG + chr3_1:7928428-7928447 None:intergenic 30.0%
CAGTTAGGAAATAATTGCAA+CGG + chr3_1:7928464-7928483 None:intergenic 30.0%
CGTTGCAATTAATCAATACT+TGG + chr3_1:7928519-7928538 None:intergenic 30.0%
ACGTATATAAGCTATCTTGT+CGG - chr3_1:7932438-7932457 Msa0347060:intron 30.0%
AACTCAATATTGATACACCA+GGG - chr3_1:7932517-7932536 Msa0347060:intron 30.0%
AAAAAACGACATTTGATGCT+TGG + chr3_1:7932747-7932766 None:intergenic 30.0%
! AGAGTAAGTTTTACAAGTGA+TGG + chr3_1:7932805-7932824 None:intergenic 30.0%
CAAAAATGTCAAAATGAGAG+TGG - chr3_1:7933033-7933052 Msa0347060:intron 30.0%
AAATAGATAGTAGTAAGTGG+TGG - chr3_1:7933089-7933108 Msa0347060:intron 30.0%
TGAGCAAAAATTAACGATGA+AGG - chr3_1:7933127-7933146 Msa0347060:intron 30.0%
! GATATAAGACTAGTTGTTGA+AGG + chr3_1:7933471-7933490 None:intergenic 30.0%
TTGTATACATGCACTCTTTA+TGG - chr3_1:7933671-7933690 Msa0347060:intron 30.0%
! CTGTCTTTATTTGTCAACAA+AGG - chr3_1:7933742-7933761 Msa0347060:intron 30.0%
AAGTCAAAGAGAAATTTCAG+AGG - chr3_1:7933828-7933847 Msa0347060:intron 30.0%
! TGAAAAGTGAAGAAGTTGAT+CGG - chr3_1:7933932-7933951 Msa0347060:intron 30.0%
! ATTTTACAGACAAGTCAAGT+TGG - chr3_1:7934232-7934251 Msa0347060:intron 30.0%
! TTTTCCCTTCATTTCTTTTG+TGG - chr3_1:7934276-7934295 Msa0347060:intron 30.0%
! TTTCCCTTCATTTCTTTTGT+GGG - chr3_1:7934277-7934296 Msa0347060:intron 30.0%
! CGTGTTTTATCAATTGGAAA+AGG + chr3_1:7934526-7934545 None:intergenic 30.0%
CAATTGATAAAACACGTTAG+CGG - chr3_1:7934530-7934549 Msa0347060:intron 30.0%
TCCATTTACGCTATGATAAT+CGG + chr3_1:7934573-7934592 None:intergenic 30.0%
!!! ATTTTTTGTTTGGCGTTTGA+AGG + chr3_1:7934640-7934659 None:intergenic 30.0%
! AGGGGTTGAATATATTTTCA+TGG - chr3_1:7934822-7934841 Msa0347060:intron 30.0%
! GGGGTTGAATATATTTTCAT+GGG - chr3_1:7934823-7934842 Msa0347060:intron 30.0%
! TGAATATATTTTCATGGGTG+AGG - chr3_1:7934828-7934847 Msa0347060:intron 30.0%
! GAATATATTTTCATGGGTGA+GGG - chr3_1:7934829-7934848 Msa0347060:intron 30.0%
TTGCATACAACTCAAAAGTA+TGG + chr3_1:7934964-7934983 None:intergenic 30.0%
AGATTATTTCATGCTGGAAA+TGG - chr3_1:7935041-7935060 Msa0347060:CDS 30.0%
! CGACATTTCATTTTCAACGA+TGG + chr3_1:7927734-7927753 None:intergenic 35.0%
GATTACACTCAACAACTTCA+AGG - chr3_1:7927971-7927990 Msa0347060:three_prime_UTR 35.0%
AACAACTATAGGATGCTCAA+AGG - chr3_1:7928298-7928317 Msa0347060:CDS 35.0%
TTAATTGCAACGTGCCAAAA+TGG - chr3_1:7928527-7928546 Msa0347060:intron 35.0%
!! TTTACCTATATGAGTGTTGG+AGG + chr3_1:7928986-7929005 None:intergenic 35.0%
CTATAGCTCATACATTTGAG+TGG + chr3_1:7929039-7929058 None:intergenic 35.0%
TATACACTATCCTACACCAT+AGG - chr3_1:7929099-7929118 Msa0347060:intron 35.0%
ATACACTATCCTACACCATA+GGG - chr3_1:7929100-7929119 Msa0347060:intron 35.0%
TTGCAAGGCTATGTTCATAT+GGG + chr3_1:7929186-7929205 None:intergenic 35.0%
TTTGCAAGGCTATGTTCATA+TGG + chr3_1:7929187-7929206 None:intergenic 35.0%
TTTAATTCTCTCCTATGTGG+GGG + chr3_1:7929423-7929442 None:intergenic 35.0%
!!! TGTTATTTTTCCCAATGTGG+GGG + chr3_1:7929578-7929597 None:intergenic 35.0%
!!! GTGTTATTTTTCCCAATGTG+GGG + chr3_1:7929579-7929598 None:intergenic 35.0%
AGTGTCGCAAGAATATATTC+AGG - chr3_1:7929705-7929724 Msa0347060:intron 35.0%
TTCCGTGGATGATTCAAAAT+TGG + chr3_1:7930841-7930860 None:intergenic 35.0%
!! GATTCCGTTGATTTATGACA+TGG + chr3_1:7930939-7930958 None:intergenic 35.0%
TCAACAAGATAAGCAGAAGA+TGG - chr3_1:7930957-7930976 Msa0347060:intron 35.0%
GTATCTATATTGAGCAAGGT+GGG + chr3_1:7931122-7931141 None:intergenic 35.0%
TGTATCTATATTGAGCAAGG+TGG + chr3_1:7931123-7931142 None:intergenic 35.0%
GGAGAACATTACTTAATGAG+AGG - chr3_1:7931174-7931193 Msa0347060:intron 35.0%
TAAATATATAGGGGAAGGAG+AGG + chr3_1:7931284-7931303 None:intergenic 35.0%
TACAAAGGAAAAATCATGGG+TGG + chr3_1:7931362-7931381 None:intergenic 35.0%
CATCTATAGTGAGCAATACA+AGG - chr3_1:7931475-7931494 Msa0347060:intron 35.0%
GAAGATGCTCTTAAGATTGT+TGG - chr3_1:7931729-7931748 Msa0347060:intron 35.0%
AACAACTATAGGATGCTCAA+AGG - chr3_1:7928298-7928317 Msa0347060:CDS 35.0%
TTAATTGCAACGTGCCAAAA+TGG - chr3_1:7928527-7928546 Msa0347060:intron 35.0%
CAACTCAATATTGATACACC+AGG - chr3_1:7932516-7932535 Msa0347060:intron 35.0%
TTCTAACTAAATAGCGTAGC+AGG - chr3_1:7932649-7932668 Msa0347060:intron 35.0%
! AAGTTTTACAAGTGATGGTC+AGG + chr3_1:7932800-7932819 None:intergenic 35.0%
TGTTCTACTTACATCAACCA+TGG + chr3_1:7933015-7933034 None:intergenic 35.0%
TACGCATAGAACCAATTAAC+AGG - chr3_1:7933253-7933272 Msa0347060:intron 35.0%
TTAATCACTCGCCTGTTAAT+TGG + chr3_1:7933267-7933286 None:intergenic 35.0%
! TTTTTCTTGCCCTTTCATTC+AGG - chr3_1:7933390-7933409 Msa0347060:intron 35.0%
!! CTTGAATCTTGAGGGTATTA+TGG + chr3_1:7933543-7933562 None:intergenic 35.0%
TAATACCCTCAAGATTCAAG+AGG - chr3_1:7933543-7933562 Msa0347060:intron 35.0%
AGTAGGGATAAAATTTCCTC+CGG - chr3_1:7933575-7933594 Msa0347060:intron 35.0%
AGAGTGCATGTATACAACAA+GGG + chr3_1:7933668-7933687 None:intergenic 35.0%
! AAGAGTGCATGTATACAACA+AGG + chr3_1:7933669-7933688 None:intergenic 35.0%
! GAAAAGTGAAGAAGTTGATC+GGG - chr3_1:7933933-7933952 Msa0347060:intron 35.0%
TTCGTATGTTGTGCATTGTT+TGG - chr3_1:7934084-7934103 Msa0347060:intron 35.0%
! TGACTTTTCGATATACCGTA+AGG - chr3_1:7934109-7934128 Msa0347060:intron 35.0%
ATATACCGTAAGGAGAAACT+TGG - chr3_1:7934119-7934138 Msa0347060:intron 35.0%
ATCATCCAAGTTTCTCCTTA+CGG + chr3_1:7934127-7934146 None:intergenic 35.0%
CAACCCACAAAAGAAATGAA+GGG + chr3_1:7934283-7934302 None:intergenic 35.0%
TCAACCCACAAAAGAAATGA+AGG + chr3_1:7934284-7934303 None:intergenic 35.0%
! CGCTAACGTGTTTTATCAAT+TGG + chr3_1:7934532-7934551 None:intergenic 35.0%
TCCGATTATCATAGCGTAAA+TGG - chr3_1:7934569-7934588 Msa0347060:intron 35.0%
!! TTAGAAGTGTTTGAAAAGGG+AGG - chr3_1:7934748-7934767 Msa0347060:intron 35.0%
! AGCAAAGTATTCAGAGAGAA+TGG - chr3_1:7934912-7934931 Msa0347060:CDS 35.0%
GTTCTCAGATTATTTCATGC+TGG - chr3_1:7935035-7935054 Msa0347060:CDS 35.0%
ATGCTGGAAATGGATAGTTT+GGG - chr3_1:7935051-7935070 Msa0347060:CDS 35.0%
!!! TGTGTGTGAAGTTTTGTTCA+AGG - chr3_1:7935081-7935100 Msa0347060:CDS 35.0%
TGATTAAGACATGGAAAAGG+AGG + chr3_1:7935118-7935137 None:intergenic 35.0%
! TCCTTTTCCATGTCTTAATC+AGG - chr3_1:7935117-7935136 Msa0347060:CDS 35.0%
TCCTGATTAAGACATGGAAA+AGG + chr3_1:7935121-7935140 None:intergenic 35.0%
! AATAAGGCACTCGTAGAAAA+AGG + chr3_1:7935163-7935182 None:intergenic 35.0%
! GCACAAAGCAGTCTAAAATA+AGG + chr3_1:7935179-7935198 None:intergenic 35.0%
AACAAAGGAGAATGAGAAGG+AGG + chr3_1:7927695-7927714 None:intergenic 40.0%
GATTTGAAGAACGCACTTTC+TGG - chr3_1:7927797-7927816 Msa0347060:three_prime_UTR 40.0%
!! AACGCACTTTCTGGAATGAT+GGG - chr3_1:7927806-7927825 Msa0347060:three_prime_UTR 40.0%
AGCAATCTCAACTCTTTGAG+AGG + chr3_1:7927897-7927916 None:intergenic 40.0%
!!! GCAAGAACGTTACTTTTACC+TGG + chr3_1:7928006-7928025 None:intergenic 40.0%
! AGGAAGAACTTATCGGTTGT+TGG - chr3_1:7928131-7928150 Msa0347060:three_prime_UTR 40.0%
AACGTGCCAAAATGGTGTAA+CGG - chr3_1:7928535-7928554 Msa0347060:intron 40.0%
CGGCAGCAATAAGAAAGTAA+CGG - chr3_1:7928555-7928574 Msa0347060:intron 40.0%
CATTGATGTTTCACGCTCTT+TGG + chr3_1:7928712-7928731 None:intergenic 40.0%
! GCATAAGCACTAGTGTCTTT+TGG - chr3_1:7928731-7928750 Msa0347060:CDS 40.0%
ATACGGAATGAGGTTCATAG+AGG + chr3_1:7928819-7928838 None:intergenic 40.0%
! ACTGATTCACATACGGAATG+AGG + chr3_1:7928829-7928848 None:intergenic 40.0%
!! TGAGGTCACTGATTCACATA+CGG + chr3_1:7928836-7928855 None:intergenic 40.0%
AGAGATCAATGTGAGTGATG+AGG + chr3_1:7928854-7928873 None:intergenic 40.0%
CACTCATGAAATCCAGGTAT+AGG + chr3_1:7928922-7928941 None:intergenic 40.0%
CTATACCTGGATTTCATGAG+TGG - chr3_1:7928920-7928939 Msa0347060:CDS 40.0%
GATAGTGTATACTACAGCGT+TGG + chr3_1:7929090-7929109 None:intergenic 40.0%
AGAATTCATCCCTATGGTGT+AGG + chr3_1:7929112-7929131 None:intergenic 40.0%
ATATTTACATCGAAGGGGGA+TGG + chr3_1:7929265-7929284 None:intergenic 40.0%
TTGGATAGATGTTGTCATGC+AGG + chr3_1:7930316-7930335 None:intergenic 40.0%
AGCGGTTAACTTAGTGTAGA+AGG + chr3_1:7930369-7930388 None:intergenic 40.0%
TGGTGTACGTGATTAGAACT+CGG + chr3_1:7930428-7930447 None:intergenic 40.0%
ACCCTTGAAATCAACCACAA+GGG + chr3_1:7930725-7930744 None:intergenic 40.0%
TACCCTTGAAATCAACCACA+AGG + chr3_1:7930726-7930745 None:intergenic 40.0%
! TAGGAATTTTGCATCAGGAG+AGG + chr3_1:7930867-7930886 None:intergenic 40.0%
! AGAGCTAGGAATTTTGCATC+AGG + chr3_1:7930872-7930891 None:intergenic 40.0%
CACTGTTCTTGGTAAAGGAA+AGG + chr3_1:7931230-7931249 None:intergenic 40.0%
CTTTCCTTTACCAAGAACAG+TGG - chr3_1:7931228-7931247 Msa0347060:intron 40.0%
AATCATGGGTGGTAGATTCT+GGG + chr3_1:7931351-7931370 None:intergenic 40.0%
AAATCATGGGTGGTAGATTC+TGG + chr3_1:7931352-7931371 None:intergenic 40.0%
GCTCACTATAGATGCAGTAA+TGG + chr3_1:7931469-7931488 None:intergenic 40.0%
! AGGAAGAACTTATCGGTTGT+TGG - chr3_1:7928131-7928150 Msa0347060:three_prime_UTR 40.0%
AACGTGCCAAAATGGTGTAA+CGG - chr3_1:7928535-7928554 Msa0347060:intron 40.0%
CGGCAGCAATAAGAAAGTAA+CGG - chr3_1:7928555-7928574 Msa0347060:intron 40.0%
AGCTATCTTGTCGGAACTTA+TGG - chr3_1:7932447-7932466 Msa0347060:intron 40.0%
CTGCAGTTGCATATCAAGTT+TGG - chr3_1:7932548-7932567 Msa0347060:intron 40.0%
ATTTGATGCTTGGTAGATGG+TGG + chr3_1:7932737-7932756 None:intergenic 40.0%
GACATTTGATGCTTGGTAGA+TGG + chr3_1:7932740-7932759 None:intergenic 40.0%
! TTTTACAAGTGATGGTCAGG+TGG + chr3_1:7932797-7932816 None:intergenic 40.0%
GAAATCGTAAAATCTCGCAG+TGG - chr3_1:7932886-7932905 Msa0347060:intron 40.0%
! GATCGTGTAACCTTTGTTTG+TGG - chr3_1:7932929-7932948 Msa0347060:intron 40.0%
TTACATCAACCATGGTCACT+AGG + chr3_1:7933007-7933026 None:intergenic 40.0%
TAGTAGTAAGTGGTGGTCAA+AGG - chr3_1:7933096-7933115 Msa0347060:intron 40.0%
TTAACGATGAAGGAGATCCA+TGG - chr3_1:7933137-7933156 Msa0347060:intron 40.0%
TAACGATGAAGGAGATCCAT+GGG - chr3_1:7933138-7933157 Msa0347060:intron 40.0%
ACTCATCCAACCTACTTCTA+AGG + chr3_1:7933175-7933194 None:intergenic 40.0%
! TTAGAAGTAGGTTGGATGAG+TGG - chr3_1:7933174-7933193 Msa0347060:intron 40.0%
TTCCTCCTCTTGAATCTTGA+GGG + chr3_1:7933551-7933570 None:intergenic 40.0%
TCAAGATTCAAGAGGAGGAA+GGG - chr3_1:7933551-7933570 Msa0347060:intron 40.0%
AGTTCAGCAGTGAAGCATAA+AGG + chr3_1:7933601-7933620 None:intergenic 40.0%
GAGTGCATGTATACAACAAG+GGG + chr3_1:7933667-7933686 None:intergenic 40.0%
! GACAGAGTACTTCAGTAACA+AGG + chr3_1:7933727-7933746 None:intergenic 40.0%
ACGCTCTTTGTTGCTAAATG+CGG - chr3_1:7933876-7933895 Msa0347060:intron 40.0%
ATGATGCTCAGCTTAAGACT+GGG - chr3_1:7934142-7934161 Msa0347060:intron 40.0%
!!! GCAGCTTTTGGTGTTGTTAA+AGG - chr3_1:7934171-7934190 Msa0347060:intron 40.0%
AATCAACTCACTGTGCTCTA+AGG - chr3_1:7934195-7934214 Msa0347060:intron 40.0%
TCGAAGTTCAGTTCAAGAAG+TGG + chr3_1:7934391-7934410 None:intergenic 40.0%
AAAGCTTATTAGCGTATGCC+TGG - chr3_1:7934410-7934429 Msa0347060:intron 40.0%
AAGCTTATTAGCGTATGCCT+GGG - chr3_1:7934411-7934430 Msa0347060:intron 40.0%
CACATAAATAGTTCCATCCC+AGG + chr3_1:7934431-7934450 None:intergenic 40.0%
GAAGACTATACTCACCACAT+TGG - chr3_1:7934670-7934689 Msa0347060:intron 40.0%
CTATGCTGCATGACTACAAT+GGG - chr3_1:7934771-7934790 Msa0347060:intron 40.0%
ATGCATGAGCTGAACTTTCT+TGG - chr3_1:7934796-7934815 Msa0347060:intron 40.0%
AGCTGAACTTTCTTGGAAGA+GGG - chr3_1:7934803-7934822 Msa0347060:intron 40.0%
TCTCTCTGAATACTTTGCTG+AGG + chr3_1:7934911-7934930 None:intergenic 40.0%
ATTCAGAGAGAATGGAAGAG+AGG - chr3_1:7934920-7934939 Msa0347060:CDS 40.0%
CATGCTGGAAATGGATAGTT+TGG - chr3_1:7935050-7935069 Msa0347060:CDS 40.0%
CCAATGTCCTGATTAAGACA+TGG + chr3_1:7935127-7935146 None:intergenic 40.0%
CCATGTCTTAATCAGGACAT+TGG - chr3_1:7935124-7935143 Msa0347060:CDS 40.0%
!! GAACGCACTTTCTGGAATGA+TGG - chr3_1:7927805-7927824 Msa0347060:three_prime_UTR 45.0%
ACTTCAAGGAAACGCTTTCC+AGG - chr3_1:7927985-7928004 Msa0347060:three_prime_UTR 45.0%
! AACTTATCGGTTGTTGGCTG+AGG - chr3_1:7928137-7928156 Msa0347060:three_prime_UTR 45.0%
TATAGAAGGACGGCATTGCT+TGG + chr3_1:7928418-7928437 None:intergenic 45.0%
! TTGCTGCCGTTACACCATTT+TGG + chr3_1:7928544-7928563 None:intergenic 45.0%
! CCTCCAAAGTTTGTTCAACG+CGG - chr3_1:7928874-7928893 Msa0347060:CDS 45.0%
ACACCGCGTTGAACAAACTT+TGG + chr3_1:7928880-7928899 None:intergenic 45.0%
! AAAGTTTGTTCAACGCGGTG+TGG - chr3_1:7928879-7928898 Msa0347060:CDS 45.0%
GAAATCCAGGTATAGGTGCA+AGG + chr3_1:7928915-7928934 None:intergenic 45.0%
TAGAGCCACTCATGAAATCC+AGG + chr3_1:7928928-7928947 None:intergenic 45.0%
!! CTATATGAGTGTTGGAGGTG+GGG + chr3_1:7928981-7929000 None:intergenic 45.0%
!! CCTATATGAGTGTTGGAGGT+GGG + chr3_1:7928982-7929001 None:intergenic 45.0%
!! ACCTATATGAGTGTTGGAGG+TGG + chr3_1:7928983-7929002 None:intergenic 45.0%
! AGTGTATACTACAGCGTTGG+AGG + chr3_1:7929087-7929106 None:intergenic 45.0%
! ATACTGACTGAGAGACGTCT+TGG + chr3_1:7929327-7929346 None:intergenic 45.0%
! ACCCCTTGTGGTTGATTTCA+AGG - chr3_1:7930720-7930739 Msa0347060:intron 45.0%
CCCTTGAAATCAACCACAAG+GGG + chr3_1:7930724-7930743 None:intergenic 45.0%
! CCCCTTGTGGTTGATTTCAA+GGG - chr3_1:7930721-7930740 Msa0347060:intron 45.0%
! TCAAAATGTGGGGGCTTTGT+AGG + chr3_1:7931047-7931066 None:intergenic 45.0%
ACAGCCACTGTTCTTGGTAA+AGG + chr3_1:7931235-7931254 None:intergenic 45.0%
TCAAGAACAGCCACTGTTCT+TGG + chr3_1:7931241-7931260 None:intergenic 45.0%
ATCATGGGTGGTAGATTCTG+GGG + chr3_1:7931350-7931369 None:intergenic 45.0%
TTGTTGCAATGCCCCTACAA+TGG + chr3_1:7931525-7931544 None:intergenic 45.0%
!! GTAGGGGCATTGCAACAATT+TGG - chr3_1:7931527-7931546 Msa0347060:intron 45.0%
! AACTTATCGGTTGTTGGCTG+AGG - chr3_1:7928137-7928156 Msa0347060:three_prime_UTR 45.0%
TATAGAAGGACGGCATTGCT+TGG + chr3_1:7928418-7928437 None:intergenic 45.0%
! TTGCTGCCGTTACACCATTT+TGG + chr3_1:7928544-7928563 None:intergenic 45.0%
TAAATAGCGTAGCAGGCAAC+CGG - chr3_1:7932656-7932675 Msa0347060:intron 45.0%
! AATGTGGTGACTAGTTGTGC+CGG + chr3_1:7932678-7932697 None:intergenic 45.0%
AGAGAGAGAGAGAGAGAATG+TGG + chr3_1:7932694-7932713 None:intergenic 45.0%
! TGGTAGATGGTGGTAACTAG+TGG + chr3_1:7932727-7932746 None:intergenic 45.0%
! CAGGTGGTGTGGTATTTTAC+CGG + chr3_1:7932781-7932800 None:intergenic 45.0%
! CGTGTAACCTTTGTTTGTGG+CGG - chr3_1:7932932-7932951 Msa0347060:intron 45.0%
! TTTTCGACCGCCACAAACAA+AGG + chr3_1:7932942-7932961 None:intergenic 45.0%
AACGATGAAGGAGATCCATG+GGG - chr3_1:7933139-7933158 Msa0347060:intron 45.0%
CCTTCACATTGCTCAACTAG+TGG + chr3_1:7933309-7933328 None:intergenic 45.0%
CCACTAGTTGAGCAATGTGA+AGG - chr3_1:7933306-7933325 Msa0347060:intron 45.0%
GAAGGAAAGAGTTTGCCCAT+AGG - chr3_1:7933324-7933343 Msa0347060:intron 45.0%
TTAAGCATAGAGGTCTGGAC+TGG + chr3_1:7933446-7933465 None:intergenic 45.0%
AGTCCAGACCTCTATGCTTA+AGG - chr3_1:7933445-7933464 Msa0347060:intron 45.0%
GTTGAAGGCCTTAAGCATAG+AGG + chr3_1:7933456-7933475 None:intergenic 45.0%
TACCCTCAAGATTCAAGAGG+AGG - chr3_1:7933546-7933565 Msa0347060:intron 45.0%
CTTCCTCCTCTTGAATCTTG+AGG + chr3_1:7933552-7933571 None:intergenic 45.0%
CTCAAGATTCAAGAGGAGGA+AGG - chr3_1:7933550-7933569 Msa0347060:intron 45.0%
CAAGATTCAAGAGGAGGAAG+GGG - chr3_1:7933552-7933571 Msa0347060:intron 45.0%
AGAGGCAAAAGCTATGCTTG+AGG - chr3_1:7933846-7933865 Msa0347060:intron 45.0%
CGCTCTTTGTTGCTAAATGC+GGG - chr3_1:7933877-7933896 Msa0347060:intron 45.0%
TCTTTGTTGCTAAATGCGGG+AGG - chr3_1:7933880-7933899 Msa0347060:intron 45.0%
TGAAGAACGAGGTGCATTCA+TGG - chr3_1:7933906-7933925 Msa0347060:intron 45.0%
GAAGAACGAGGTGCATTCAT+GGG - chr3_1:7933907-7933926 Msa0347060:intron 45.0%
AAGAACGAGGTGCATTCATG+GGG - chr3_1:7933908-7933927 Msa0347060:intron 45.0%
TGATCGGGATGAAGAGAGAT+TGG - chr3_1:7933948-7933967 Msa0347060:intron 45.0%
GGATGAAGAGAGATTGGAGT+CGG - chr3_1:7933954-7933973 Msa0347060:intron 45.0%
GATGATGCTCAGCTTAAGAC+TGG - chr3_1:7934141-7934160 Msa0347060:intron 45.0%
TGATGCTCAGCTTAAGACTG+GGG - chr3_1:7934143-7934162 Msa0347060:intron 45.0%
CTGAAACAAAACCGTGTTGC+AGG - chr3_1:7934343-7934362 Msa0347060:intron 45.0%
TTATTAGCGTATGCCTGGGA+TGG - chr3_1:7934415-7934434 Msa0347060:intron 45.0%
GCTATGCTGCATGACTACAA+TGG - chr3_1:7934770-7934789 Msa0347060:intron 45.0%
GAGCTGAACTTTCTTGGAAG+AGG - chr3_1:7934802-7934821 Msa0347060:intron 45.0%
GCTGAACTTTCTTGGAAGAG+GGG - chr3_1:7934804-7934823 Msa0347060:intron 45.0%
TCTGAATACTTTGCTGAGGC+AGG + chr3_1:7934907-7934926 None:intergenic 45.0%
CTGGAAATGGATAGTTTGGG+AGG - chr3_1:7935054-7935073 Msa0347060:CDS 45.0%
ATCAGGTGATTGACCTGTGG+CGG + chr3_1:7928195-7928214 None:intergenic 50.0%
TGCATCAGGTGATTGACCTG+TGG + chr3_1:7928198-7928217 None:intergenic 50.0%
GGTCAATCACCTGATGCAGT+TGG - chr3_1:7928200-7928219 Msa0347060:three_prime_UTR 50.0%
GAGAAGAGGCTGTTGTATCC+TGG + chr3_1:7928244-7928263 None:intergenic 50.0%
CGTGCAGTGTTAGTGAGAAG+AGG + chr3_1:7928258-7928277 None:intergenic 50.0%
! GAGGGCACAGGAACAACTAT+AGG - chr3_1:7928287-7928306 Msa0347060:CDS 50.0%
CCGCGTTGAACAAACTTTGG+AGG + chr3_1:7928877-7928896 None:intergenic 50.0%
!! TTTGGCCTTGCACCTATACC+TGG - chr3_1:7928907-7928926 Msa0347060:CDS 50.0%
GTCTGCCCAAGCTTTCATAG+AGG - chr3_1:7928952-7928971 Msa0347060:CDS 50.0%
TGCCCAAGCTTTCATAGAGG+CGG - chr3_1:7928955-7928974 Msa0347060:CDS 50.0%
CCCACCTCCAACACTCATAT+AGG - chr3_1:7928979-7928998 Msa0347060:CDS 50.0%
TTGAGTGGTGTGCTTGACTG+TGG + chr3_1:7929024-7929043 None:intergenic 50.0%
AAGCAACAACACCCCCACAT+AGG - chr3_1:7929409-7929428 Msa0347060:intron 50.0%
AATGTGTACCTGACCCCTTG+TGG - chr3_1:7930708-7930727 Msa0347060:intron 50.0%
GAAATCAACCACAAGGGGTC+AGG + chr3_1:7930719-7930738 None:intergenic 50.0%
! CATCAGGAGAGGATTTTCCG+TGG + chr3_1:7930856-7930875 None:intergenic 50.0%
ATCAGGTGATTGACCTGTGG+CGG + chr3_1:7928195-7928214 None:intergenic 50.0%
TGCATCAGGTGATTGACCTG+TGG + chr3_1:7928198-7928217 None:intergenic 50.0%
GGTCAATCACCTGATGCAGT+TGG - chr3_1:7928200-7928219 Msa0347060:three_prime_UTR 50.0%
GAGAAGAGGCTGTTGTATCC+TGG + chr3_1:7928244-7928263 None:intergenic 50.0%
CGTGCAGTGTTAGTGAGAAG+AGG + chr3_1:7928258-7928277 None:intergenic 50.0%
! GAGGGCACAGGAACAACTAT+AGG - chr3_1:7928287-7928306 Msa0347060:CDS 50.0%
!!! CGTTTTTTGTCATGCAGCGC+CGG - chr3_1:7932759-7932778 Msa0347060:intron 50.0%
ACGGAGATTCCTAGTGACCA+TGG - chr3_1:7932995-7933014 Msa0347060:intron 50.0%
! AGGTTGGCTGCCTTAGAAGT+AGG - chr3_1:7933162-7933181 Msa0347060:intron 50.0%
TGGCTGCCTTAGAAGTAGGT+TGG - chr3_1:7933166-7933185 Msa0347060:intron 50.0%
AGGCCTTAAGCATAGAGGTC+TGG + chr3_1:7933451-7933470 None:intergenic 50.0%
CAGCAGTGAAGCATAAAGGC+CGG + chr3_1:7933597-7933616 None:intergenic 50.0%
GCATCTATCTCTGCCCTTGT+TGG - chr3_1:7933985-7934004 Msa0347060:intron 50.0%
! CCCTGACAAAGTGCCAACAA+GGG + chr3_1:7934001-7934020 None:intergenic 50.0%
CCCTTGTTGGCACTTTGTCA+GGG - chr3_1:7933998-7934017 Msa0347060:intron 50.0%
TGGCCTGAGTGAAGCATATG+GGG + chr3_1:7934026-7934045 None:intergenic 50.0%
GTGGCCTGAGTGAAGCATAT+GGG + chr3_1:7934027-7934046 None:intergenic 50.0%
CAGAGAGAAGCAGCTGAGTT+GGG + chr3_1:7934053-7934072 None:intergenic 50.0%
ACAGAGAGAAGCAGCTGAGT+TGG + chr3_1:7934054-7934073 None:intergenic 50.0%
AACTCAGCTGCTTCTCTCTG+TGG - chr3_1:7934053-7934072 Msa0347060:intron 50.0%
GGATTGCAAGACCTGCAACA+CGG + chr3_1:7934357-7934376 None:intergenic 50.0%
CGGCATGCAACTTTCCAATG+TGG + chr3_1:7934687-7934706 None:intergenic 50.0%
CAGAGAGAATGGAAGAGAGG+AGG - chr3_1:7934923-7934942 Msa0347060:CDS 50.0%
CAGCAGCAGCAAGAACTCAG+AGG - chr3_1:7927766-7927785 Msa0347060:three_prime_UTR 55.0%
!! TAAGAGCATTTCGCCGCCAC+AGG - chr3_1:7928179-7928198 Msa0347060:three_prime_UTR 55.0%
!! GCTTTGAGGCCAACTGCATC+AGG + chr3_1:7928212-7928231 None:intergenic 55.0%
!! CCTGGAGAGCACTAGCTTTG+AGG + chr3_1:7928226-7928245 None:intergenic 55.0%
CCTCAAAGCTAGTGCTCTCC+AGG - chr3_1:7928223-7928242 Msa0347060:three_prime_UTR 55.0%
ACACTGCACGTGAACTAGCG+AGG - chr3_1:7928268-7928287 Msa0347060:exon 55.0%
CACTGCACGTGAACTAGCGA+GGG - chr3_1:7928269-7928288 Msa0347060:exon 55.0%
! CAACGCGGTGTGGTGCATTT+TGG - chr3_1:7928889-7928908 Msa0347060:CDS 55.0%
GGCCGCCTCTATGAAAGCTT+GGG + chr3_1:7928960-7928979 None:intergenic 55.0%
!! AATGTGGGGGCGTTGTTGCT+TGG + chr3_1:7929488-7929507 None:intergenic 55.0%
AAGCAACAACGCCCCCACAT+TGG - chr3_1:7929487-7929506 Msa0347060:intron 55.0%
AGCAACAACGCCCCCACATT+GGG - chr3_1:7929488-7929507 Msa0347060:intron 55.0%
AAGTGACGACACCCCCACAT+TGG - chr3_1:7929564-7929583 Msa0347060:intron 55.0%
AGTGACGACACCCCCACATT+GGG - chr3_1:7929565-7929584 Msa0347060:intron 55.0%
! TGTGGGGGCTTTGTAGGCAA+AGG + chr3_1:7931041-7931060 None:intergenic 55.0%
!! TAAGAGCATTTCGCCGCCAC+AGG - chr3_1:7928179-7928198 Msa0347060:three_prime_UTR 55.0%
!! GCTTTGAGGCCAACTGCATC+AGG + chr3_1:7928212-7928231 None:intergenic 55.0%
!! CCTGGAGAGCACTAGCTTTG+AGG + chr3_1:7928226-7928245 None:intergenic 55.0%
CCTCAAAGCTAGTGCTCTCC+AGG - chr3_1:7928223-7928242 Msa0347060:three_prime_UTR 55.0%
ACACTGCACGTGAACTAGCG+AGG - chr3_1:7928268-7928287 Msa0347060:exon 55.0%
CACTGCACGTGAACTAGCGA+GGG - chr3_1:7928269-7928288 Msa0347060:exon 55.0%
CAACTGCAGAGACAAGTCCC+TGG + chr3_1:7932537-7932556 None:intergenic 55.0%
TGGCATGGCAGCATAGCAGT+AGG + chr3_1:7932626-7932645 None:intergenic 55.0%
CAAGTGATGGTCAGGTGGTG+TGG + chr3_1:7932792-7932811 None:intergenic 55.0%
GATGAAGGAGATCCATGGGG+AGG - chr3_1:7933142-7933161 Msa0347060:intron 55.0%
AAGGAGATCCATGGGGAGGT+TGG - chr3_1:7933146-7933165 Msa0347060:intron 55.0%
TCAAGAGGAGGAAGGGGAGT+AGG - chr3_1:7933558-7933577 Msa0347060:intron 55.0%
CAAGAGGAGGAAGGGGAGTA+GGG - chr3_1:7933559-7933578 Msa0347060:intron 55.0%
CAGTGAAGCATAAAGGCCGG+AGG + chr3_1:7933594-7933613 None:intergenic 55.0%
GCCCTTGTTGGCACTTTGTC+AGG - chr3_1:7933997-7934016 Msa0347060:intron 55.0%
! GCCCTGACAAAGTGCCAACA+AGG + chr3_1:7934002-7934021 None:intergenic 55.0%
GCTCCCCATATGCTTCACTC+AGG - chr3_1:7934020-7934039 Msa0347060:intron 55.0%
GGTGGCCTGAGTGAAGCATA+TGG + chr3_1:7934028-7934047 None:intergenic 55.0%
!! AAGCAGCTGAGTTGGGTTGG+TGG + chr3_1:7934046-7934065 None:intergenic 55.0%
! GAGAAGCAGCTGAGTTGGGT+TGG + chr3_1:7934049-7934068 None:intergenic 55.0%
! ACTGGGGTTGCAGCAGCTTT+TGG - chr3_1:7934159-7934178 Msa0347060:intron 55.0%
GGTCTTGCAATCCTAAGCGC+TGG - chr3_1:7934364-7934383 Msa0347060:intron 55.0%
CAAGAAGTGGTCCAGCGCTT+AGG + chr3_1:7934378-7934397 None:intergenic 55.0%
CTGAGGCGTGCAAACGCACT+GGG - chr3_1:7928154-7928173 Msa0347060:three_prime_UTR 60.0%
! ACGTGAACTAGCGAGGGCAC+AGG - chr3_1:7928275-7928294 Msa0347060:exon 60.0%
GGGCCGCCTCTATGAAAGCT+TGG + chr3_1:7928961-7928980 None:intergenic 60.0%
CTGAGGCGTGCAAACGCACT+GGG - chr3_1:7928154-7928173 Msa0347060:three_prime_UTR 60.0%
! ACGTGAACTAGCGAGGGCAC+AGG - chr3_1:7928275-7928294 Msa0347060:exon 60.0%
TAAGGCAGCCAACCTCCCCA+TGG + chr3_1:7933157-7933176 None:intergenic 60.0%
GCTGAGGCGTGCAAACGCAC+TGG - chr3_1:7928153-7928172 Msa0347060:three_prime_UTR 65.0%
GCTGAGGCGTGCAAACGCAC+TGG - chr3_1:7928153-7928172 Msa0347060:three_prime_UTR 65.0%
!! GCGGGAGGTGCTGAAGAACG+AGG - chr3_1:7933895-7933914 Msa0347060:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 7927614 7935222 7927614 ID=Msa0347060;Name=Msa0347060
chr3_1 mRNA 7927614 7935222 7927614 ID=Msa0347060-mRNA-1;Parent=Msa0347060;Name=Msa0347060-mRNA-1;_AED=0.11;_eAED=0.11;_QI=30|1|1|1|0.5|0.66|3|673|306
chr3_1 exon 7927614 7928471 7927614 ID=Msa0347060-mRNA-1:exon:2253;Parent=Msa0347060-mRNA-1
chr3_1 exon 7928644 7929016 7928644 ID=Msa0347060-mRNA-1:exon:2252;Parent=Msa0347060-mRNA-1
chr3_1 exon 7934830 7935222 7934830 ID=Msa0347060-mRNA-1:exon:2251;Parent=Msa0347060-mRNA-1
chr3_1 five_prime_UTR 7935193 7935222 7935193 ID=Msa0347060-mRNA-1:five_prime_utr;Parent=Msa0347060-mRNA-1
chr3_1 CDS 7934830 7935192 7934830 ID=Msa0347060-mRNA-1:cds;Parent=Msa0347060-mRNA-1
chr3_1 CDS 7928644 7929016 7928644 ID=Msa0347060-mRNA-1:cds;Parent=Msa0347060-mRNA-1
chr3_1 CDS 7928287 7928471 7928287 ID=Msa0347060-mRNA-1:cds;Parent=Msa0347060-mRNA-1
chr3_1 three_prime_UTR 7927614 7928286 7927614 ID=Msa0347060-mRNA-1:three_prime_utr;Parent=Msa0347060-mRNA-1
Gene Sequence

>Msa0347060

ATGATGAACGTTATGATGATTTCCACTTCCATTATTAGATTTACGCTTCCTCCTTCTCATTCTCCTTTGTTAATTAAAACGTTTCATCCATCGTTGAAAATGAAATGTCGCTGCAGCAGCAGCAGCAGCAGCAAGAACTCAGAGGAGAACAACGATTTGAAGAACGCACTTTCTGGAATGATGGGTGAGCAAGTTGAACAACTCTTAAGCAGAGAAGAGAACAAAGTTTTATTCGATAATTTACAGAAAGCCTCTCAAAGAGTTGAGATTGCTAAGACACAACTCGCTTTCATTCAGAAACAAGAACTTGCTCTTAAACACTTTAAGGATTACACTCAACAACTTCAAGGAAACGCTTTCCAGATTGCAGAAAGTCAAAGAGAAATTTCAGAGGCAAAAGCTATGCTTGAGGAAGCAGAACGCTCTTTGTTGCTAAATGCGGGAGGTGCTGAAGAACGAGGTGCATTCATGGGGATGAAAAGTGAAGAAGTTGATCGGGATGAAGAGAGATTGGAGTCGGTAAAAGCAGCATCTATCTCTGCCCTTGTTGGCACTTTGTCAGGGCTCCCCATATGCTTCACTCAGGCCACCAACCCAACTCAGCTGCTTCTCTCTGTGGCAATCAATTTCGTATGTTGTGCATTGTTTGGAGTGACTTTTCGATATACCGTAAGGAGAAACTTGGATGATGCTCAGCTTAAGACTGGGGTTGCAGCAGCTTTTGGTGTTGTTAAAGGTCTTGCAATCCTAAGCGCTGGACCACTTCTTGAACTGAACTTCGAAAGCTTATTAGCGTATGCCTGGGATGGAACTATTTATGTGTCTGAGAATCTTATAATTTTTGTTTCTGCTGCTGTTAGTCTAGATTATTGTTTAAAGACAAGACTTTTGAGCCCTTTTCCAATTGATAAAACACGTTAG

Protein sequence

>Msa0347060

MMNVMMISTSIIRFTLPPSHSPLLIKTFHPSLKMKCRCSSSSSSKNSEENNDLKNALSGMMGEQVEQLLSREENKVLFDNLQKASQRVEIAKTQLAFIQKQELALKHFKDYTQQLQGNAFQIAESQREISEAKAMLEEAERSLLLNAGGAEERGAFMGMKSEEVDRDEERLESVKAASISALVGTLSGLPICFTQATNPTQLLLSVAINFVCCALFGVTFRYTVRRNLDDAQLKTGVAAAFGVVKGLAILSAGPLLELNFESLLAYAWDGTIYVSENLIIFVSAAVSLDYCLKTRLLSPFPIDKTR*