Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712920 | XP_003612265.1 | 93.293 | 328 | 19 | 3 | 1 | 327 | 1 | 326 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712920 | sp|Q93VH2|BBD2_ARATH | 38.462 | 182 | 105 | 4 | 141 | 317 | 137 | 316 | 2.44e-32 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712920 | G7JYS6 | 93.293 | 328 | 19 | 3 | 1 | 327 | 1 | 326 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000220 | Msa0712920 | -0.830348 | 3.088804e-55 | -8.615850e-47 |
| Msa0017980 | Msa0712920 | -0.820098 | 8.207420e-53 | -8.615850e-47 |
| Msa0021240 | Msa0712920 | -0.802343 | 5.867706e-49 | -8.615850e-47 |
| Msa0021710 | Msa0712920 | -0.802336 | 5.888769e-49 | -8.615850e-47 |
| Msa0025340 | Msa0712920 | -0.805007 | 1.643572e-49 | -8.615850e-47 |
| Msa0028450 | Msa0712920 | -0.808982 | 2.369781e-50 | -8.615850e-47 |
| Msa0030710 | Msa0712920 | -0.835145 | 1.990002e-56 | -8.615850e-47 |
| Msa0034590 | Msa0712920 | -0.809787 | 1.592312e-50 | -8.615850e-47 |
| Msa0034800 | Msa0712920 | -0.836100 | 1.140686e-56 | -8.615850e-47 |
| Msa0046700 | Msa0712920 | -0.805716 | 1.167014e-49 | -8.615850e-47 |
| Msa0083200 | Msa0712920 | -0.805529 | 1.277795e-49 | -8.615850e-47 |
| Msa0086460 | Msa0712920 | -0.801842 | 7.439618e-49 | -8.615850e-47 |
| Msa0097730 | Msa0712920 | -0.810613 | 1.056596e-50 | -8.615850e-47 |
| Msa0101150 | Msa0712920 | -0.840308 | 9.401605e-58 | -8.615850e-47 |
| Msa0101210 | Msa0712920 | -0.840299 | 9.451604e-58 | -8.615850e-47 |
| Msa0113910 | Msa0712920 | -0.804818 | 1.799513e-49 | -8.615850e-47 |
| Msa0114960 | Msa0712920 | -0.800322 | 1.521767e-48 | -8.615850e-47 |
| Msa0116950 | Msa0712920 | -0.819420 | 1.172225e-52 | -8.615850e-47 |
| Msa0606380 | Msa0712920 | -0.802191 | 6.306772e-49 | -8.615850e-47 |
| Msa0617010 | Msa0712920 | -0.813220 | 2.857940e-51 | -8.615850e-47 |
| Msa0622800 | Msa0712920 | -0.841958 | 3.464665e-58 | -8.615850e-47 |
| Msa0624260 | Msa0712920 | -0.801953 | 7.060924e-49 | -8.615850e-47 |
| Msa0624360 | Msa0712920 | -0.804276 | 2.334472e-49 | -8.615850e-47 |
| Msa0665010 | Msa0712920 | -0.809760 | 1.613327e-50 | -8.615850e-47 |
| Msa0687320 | Msa0712920 | -0.805667 | 1.195058e-49 | -8.615850e-47 |
| Msa0707870 | Msa0712920 | -0.800119 | 1.673412e-48 | -8.615850e-47 |
| Msa0712920 | Msa0762480 | -0.814885 | 1.226616e-51 | -8.615850e-47 |
| Msa0712920 | Msa0822680 | -0.807430 | 5.074267e-50 | -8.615850e-47 |
| Msa0712920 | Msa0838560 | 0.862835 | 3.824055e-64 | -8.615850e-47 |
| Msa0712920 | Msa0842370 | -0.815462 | 9.132281e-52 | -8.615850e-47 |
| Msa0712920 | Msa0880370 | -0.825832 | 3.779549e-54 | -8.615850e-47 |
| Msa0712920 | Msa0883880 | -0.804595 | 2.003083e-49 | -8.615850e-47 |
| Msa0712920 | Msa0907520 | -0.850446 | 1.689522e-60 | -8.615850e-47 |
| Msa0712920 | Msa0932040 | -0.808945 | 2.413846e-50 | -8.615850e-47 |
| Msa0712920 | Msa0940400 | -0.828113 | 1.076725e-54 | -8.615850e-47 |
| Msa0712920 | Msa0946570 | -0.805236 | 1.471808e-49 | -8.615850e-47 |
| Msa0712920 | Msa0948820 | -0.807156 | 5.801305e-50 | -8.615850e-47 |
| Msa0712920 | Msa0970160 | -0.816162 | 6.375448e-52 | -8.615850e-47 |
| Msa0712920 | Msa0976950 | -0.820201 | 7.771334e-53 | -8.615850e-47 |
| Msa0712920 | Msa0985980 | -0.820860 | 5.486460e-53 | -8.615850e-47 |
| Msa0712920 | Msa1038040 | -0.801577 | 8.432325e-49 | -8.615850e-47 |
| Msa0712920 | Msa1084630 | -0.839482 | 1.543310e-57 | -8.615850e-47 |
| Msa0712920 | Msa1126980 | -0.812123 | 4.966718e-51 | -8.615850e-47 |
| Msa0712920 | Msa1130070 | -0.801585 | 8.400785e-49 | -8.615850e-47 |
| Msa0712920 | Msa1166020 | -0.830560 | 2.741341e-55 | -8.615850e-47 |
| Msa0712920 | Msa1190320 | -0.809653 | 1.701324e-50 | -8.615850e-47 |
| Msa0712920 | Msa1197210 | -0.814330 | 1.627661e-51 | -8.615850e-47 |
| Msa0712920 | Msa1198280 | -0.829875 | 4.029632e-55 | -8.615850e-47 |
| Msa0712920 | Msa1198420 | -0.801649 | 8.149244e-49 | -8.615850e-47 |
| Msa0712920 | Msa1199690 | -0.819502 | 1.122864e-52 | -8.615850e-47 |
| Msa0712920 | Msa1207660 | -0.802105 | 6.568351e-49 | -8.615850e-47 |
| Msa0712920 | Msa1207770 | -0.804036 | 2.619209e-49 | -8.615850e-47 |
| Msa0712920 | Msa1209390 | -0.846290 | 2.382712e-59 | -8.615850e-47 |
| Msa0712920 | Msa1209650 | -0.854345 | 1.309424e-61 | -8.615850e-47 |
| Msa0712920 | Msa1211880 | -0.801119 | 1.046264e-48 | -8.615850e-47 |
| Msa0712920 | Msa1215660 | -0.847496 | 1.114644e-59 | -8.615850e-47 |
| Msa0712920 | Msa1220290 | -0.820199 | 7.779947e-53 | -8.615850e-47 |
| Msa0712920 | Msa1220390 | -0.852191 | 5.426340e-61 | -8.615850e-47 |
| Msa0712920 | Msa1235990 | -0.802642 | 5.092635e-49 | -8.615850e-47 |
| Msa0712920 | Msa1236090 | -0.810883 | 9.235623e-51 | -8.615850e-47 |
| Msa0712920 | Msa1251890 | -0.812407 | 4.305392e-51 | -8.615850e-47 |
| Msa0712920 | Msa1252040 | -0.819859 | 9.305711e-53 | -8.615850e-47 |
| Msa0712920 | Msa1257860 | -0.800341 | 1.508411e-48 | -8.615850e-47 |
| Msa0712920 | Msa1265900 | -0.852722 | 3.830782e-61 | -8.615850e-47 |
| Msa0712920 | Msa1267800 | -0.816761 | 4.681180e-52 | -8.615850e-47 |
| Msa0712920 | Msa1298740 | -0.824987 | 5.992769e-54 | -8.615850e-47 |
| Msa0712920 | Msa1303470 | -0.844423 | 7.631808e-59 | -8.615850e-47 |
| Msa0712920 | Msa1331530 | -0.804068 | 2.580012e-49 | -8.615850e-47 |
| Msa0712920 | Msa1332180 | -0.801487 | 8.797302e-49 | -8.615850e-47 |
| Msa0712920 | Msa1335500 | 0.803768 | 2.977927e-49 | -8.615850e-47 |
| Msa0712920 | Msa1341590 | -0.822500 | 2.291889e-53 | -8.615850e-47 |
| Msa0712920 | Msa1356500 | -0.815334 | 9.749939e-52 | -8.615850e-47 |
| Msa0712920 | Msa1361090 | -0.817317 | 3.511586e-52 | -8.615850e-47 |
| Msa0712920 | Msa1366400 | -0.802492 | 5.468261e-49 | -8.615850e-47 |
| Msa0712920 | Msa1370830 | -0.851578 | 8.100956e-61 | -8.615850e-47 |
| Msa0712920 | Msa1393350 | -0.828747 | 7.571200e-55 | -8.615850e-47 |
| Msa0712920 | Msa1396310 | -0.832897 | 7.274211e-56 | -8.615850e-47 |
| Msa0712920 | Msa1400330 | -0.840273 | 9.605467e-58 | -8.615850e-47 |
| Msa0712920 | Msa1400600 | -0.811833 | 5.744606e-51 | -8.615850e-47 |
| Msa0712920 | Msa1426690 | -0.807609 | 4.649100e-50 | -8.615850e-47 |
| Msa0712920 | Msa1433060 | -0.803570 | 3.273009e-49 | -8.615850e-47 |
| Msa0712920 | Msa1448410 | -0.851802 | 6.998654e-61 | -8.615850e-47 |
| Msa0712920 | Msa1449510 | -0.802850 | 4.613140e-49 | -8.615850e-47 |
| Msa0124070 | Msa0712920 | -0.811207 | 7.856037e-51 | -8.615850e-47 |
| Msa0129270 | Msa0712920 | 0.802542 | 5.339050e-49 | -8.615850e-47 |
| Msa0147070 | Msa0712920 | -0.803459 | 3.451966e-49 | -8.615850e-47 |
| Msa0156780 | Msa0712920 | -0.807350 | 5.275703e-50 | -8.615850e-47 |
| Msa0160080 | Msa0712920 | -0.835750 | 1.398722e-56 | -8.615850e-47 |
| Msa0160200 | Msa0712920 | 0.815744 | 7.902231e-52 | -8.615850e-47 |
| Msa0160240 | Msa0712920 | 0.800614 | 1.326882e-48 | -8.615850e-47 |
| Msa0160470 | Msa0712920 | -0.811866 | 5.650118e-51 | -8.615850e-47 |
| Msa0168470 | Msa0712920 | -0.804984 | 1.661151e-49 | -8.615850e-47 |
| Msa0170640 | Msa0712920 | -0.819896 | 9.129124e-53 | -8.615850e-47 |
| Msa0170730 | Msa0712920 | -0.806311 | 8.749149e-50 | -8.615850e-47 |
| Msa0174800 | Msa0712920 | -0.837724 | 4.390102e-57 | -8.615850e-47 |
| Msa0181740 | Msa0712920 | -0.819108 | 1.380868e-52 | -8.615850e-47 |
| Msa0184320 | Msa0712920 | 0.919050 | 7.304823e-87 | -8.615850e-47 |
| Msa0186380 | Msa0712920 | -0.803658 | 3.138036e-49 | -8.615850e-47 |
| Msa0186750 | Msa0712920 | -0.801476 | 8.845697e-49 | -8.615850e-47 |
| Msa0219720 | Msa0712920 | -0.839416 | 1.605579e-57 | -8.615850e-47 |
| Msa0225050 | Msa0712920 | -0.803775 | 2.967729e-49 | -8.615850e-47 |
| Msa0369660 | Msa0712920 | 0.812040 | 5.178366e-51 | -8.615850e-47 |
| Msa0385870 | Msa0712920 | -0.803005 | 4.285869e-49 | -8.615850e-47 |
| Msa0386390 | Msa0712920 | -0.813370 | 2.649453e-51 | -8.615850e-47 |
| Msa0403670 | Msa0712920 | -0.828116 | 1.074745e-54 | -8.615850e-47 |
| Msa0405040 | Msa0712920 | -0.828879 | 7.033247e-55 | -8.615850e-47 |
| Msa0417000 | Msa0712920 | -0.815201 | 1.043626e-51 | -8.615850e-47 |
| Msa0421100 | Msa0712920 | -0.811170 | 8.005667e-51 | -8.615850e-47 |
| Msa0463890 | Msa0712920 | 0.809560 | 1.781387e-50 | -8.615850e-47 |
| Msa0474220 | Msa0712920 | -0.803472 | 3.430170e-49 | -8.615850e-47 |
| Msa0475080 | Msa0712920 | -0.815796 | 7.693983e-52 | -8.615850e-47 |
| Msa0479790 | Msa0712920 | -0.812197 | 4.785647e-51 | -8.615850e-47 |
| Msa0481580 | Msa0712920 | -0.824893 | 6.307168e-54 | -8.615850e-47 |
| Msa0482020 | Msa0712920 | -0.849317 | 3.494701e-60 | -8.615850e-47 |
| Msa0243160 | Msa0712920 | -0.803639 | 3.166453e-49 | -8.615850e-47 |
| Msa0249670 | Msa0712920 | -0.813299 | 2.746011e-51 | -8.615850e-47 |
| Msa0260930 | Msa0712920 | -0.841670 | 4.126653e-58 | -8.615850e-47 |
| Msa0261020 | Msa0712920 | -0.822422 | 2.388835e-53 | -8.615850e-47 |
| Msa0285200 | Msa0712920 | -0.809317 | 2.008761e-50 | -8.615850e-47 |
| Msa0298590 | Msa0712920 | -0.803483 | 3.411313e-49 | -8.615850e-47 |
| Msa0324060 | Msa0712920 | -0.810113 | 1.354603e-50 | -8.615850e-47 |
| Msa0335860 | Msa0712920 | -0.813960 | 1.964486e-51 | -8.615850e-47 |
| Msa0336550 | Msa0712920 | -0.842473 | 2.531720e-58 | -8.615850e-47 |
| Msa0484240 | Msa0712920 | 0.927858 | 6.530603e-92 | -8.615850e-47 |
| Msa0498320 | Msa0712920 | -0.822126 | 2.798355e-53 | -8.615850e-47 |
| Msa0509350 | Msa0712920 | -0.800502 | 1.398564e-48 | -8.615850e-47 |
| Msa0513660 | Msa0712920 | -0.813400 | 2.609114e-51 | -8.615850e-47 |
| Msa0522510 | Msa0712920 | -0.806068 | 9.844920e-50 | -8.615850e-47 |
| Msa0559440 | Msa0712920 | -0.802569 | 5.272427e-49 | -8.615850e-47 |
| Msa0564000 | Msa0712920 | -0.805507 | 1.291431e-49 | -8.615850e-47 |
| Msa0565930 | Msa0712920 | -0.803028 | 4.237703e-49 | -8.615850e-47 |
| Msa0576510 | Msa0712920 | -0.805164 | 1.523493e-49 | -8.615850e-47 |
| Msa0577140 | Msa0712920 | -0.802376 | 5.777288e-49 | -8.615850e-47 |
| Msa0581190 | Msa0712920 | -0.825379 | 4.841173e-54 | -8.615850e-47 |
| Msa0581490 | Msa0712920 | -0.813686 | 2.257412e-51 | -8.615850e-47 |
| Msa0587060 | Msa0712920 | -0.812230 | 4.706692e-51 | -8.615850e-47 |
| Msa0592020 | Msa0712920 | 0.804476 | 2.121519e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712920 | MtrunA17_Chr5g0406211 | 93.293 | 328 | 19 | 3 | 1 | 327 | 1 | 326 | 0.0 | 595 |
| Msa0712920 | MtrunA17_Chr3g0141831 | 35.354 | 198 | 120 | 5 | 134 | 325 | 122 | 317 | 3.99e-32 | 122 |
| Msa0712920 | MtrunA17_Chr1g0155531 | 34.359 | 195 | 115 | 5 | 141 | 324 | 133 | 325 | 1.67e-28 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712920 | AT5G66050.1 | 47.931 | 290 | 137 | 5 | 39 | 324 | 46 | 325 | 9.35e-88 | 267 |
| Msa0712920 | AT5G66050.3 | 47.751 | 289 | 137 | 5 | 39 | 323 | 46 | 324 | 3.25e-87 | 265 |
| Msa0712920 | AT5G66050.2 | 52.814 | 231 | 104 | 3 | 98 | 324 | 2 | 231 | 1.35e-82 | 250 |
| Msa0712920 | AT5G66050.4 | 46.863 | 271 | 130 | 5 | 39 | 305 | 46 | 306 | 9.15e-78 | 241 |
| Msa0712920 | AT1G19660.2 | 38.462 | 182 | 105 | 4 | 141 | 317 | 137 | 316 | 2.48e-33 | 125 |
| Msa0712920 | AT1G19660.1 | 38.462 | 182 | 105 | 4 | 141 | 317 | 137 | 316 | 2.48e-33 | 125 |
| Msa0712920 | AT1G75380.3 | 37.097 | 186 | 110 | 4 | 141 | 321 | 133 | 316 | 3.02e-32 | 122 |
| Msa0712920 | AT1G75380.1 | 37.097 | 186 | 110 | 4 | 141 | 321 | 133 | 316 | 3.02e-32 | 122 |
| Msa0712920 | AT1G75380.4 | 37.097 | 186 | 110 | 4 | 141 | 321 | 133 | 316 | 3.02e-32 | 122 |
| Msa0712920 | AT1G75380.2 | 37.097 | 186 | 110 | 4 | 141 | 321 | 133 | 316 | 3.02e-32 | 122 |
| Msa0712920 | AT1G19660.3 | 36.364 | 176 | 105 | 4 | 141 | 311 | 137 | 310 | 4.69e-28 | 111 |
Find 86 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTATTTGCAACATTAA+TGG | 0.190657 | 5_1:-4802436 | None:intergenic |
| TGAGGAAGGATTTGGGTTTA+TGG | 0.190859 | 5_1:-4800349 | None:intergenic |
| ATTTCTTTACTTACATATAT+TGG | 0.231030 | 5_1:-4802613 | None:intergenic |
| TGAAATCATTAAAAGAATTA+TGG | 0.251782 | 5_1:+4803547 | Msa0712920:three_prime_UTR |
| ACATGAAATGAGGAAGGATT+TGG | 0.264528 | 5_1:-4800357 | None:intergenic |
| TTTACTCTTTCAGGTGATAA+TGG | 0.294692 | 5_1:+4802225 | Msa0712920:intron |
| GTTATGATGATCGCTGAAAT+TGG | 0.303922 | 5_1:-4800399 | None:intergenic |
| AGTTCTTGAGCTACCGAATC+TGG | 0.317594 | 5_1:-4802862 | None:intergenic |
| TCATCTCAGGAGCACTAATT+AGG | 0.325608 | 5_1:+4803123 | Msa0712920:exon |
| TTATCAAATCAAATGTATTA+AGG | 0.330207 | 5_1:+4803432 | Msa0712920:three_prime_UTR |
| CTCGTACTTCCACCTGTACT+TGG | 0.335343 | 5_1:+4803475 | Msa0712920:three_prime_UTR |
| CAACTAGGTTATTCACAAAC+TGG | 0.340562 | 5_1:-4801538 | None:intergenic |
| AATGAAGAAGATGAAGATAA+AGG | 0.356660 | 5_1:-4800138 | None:intergenic |
| TACCGAATCTGGACCATCTA+TGG | 0.358074 | 5_1:-4802851 | None:intergenic |
| TATGTTCTGCCCATTGTTGT+AGG | 0.358421 | 5_1:+4801274 | Msa0712920:CDS |
| GGAGCACTAATTAGGTTGTT+AGG | 0.368218 | 5_1:+4803131 | Msa0712920:exon |
| CATGAAATGAGGAAGGATTT+GGG | 0.368700 | 5_1:-4800356 | None:intergenic |
| CATTAAAAGAATTATGGCTT+TGG | 0.371989 | 5_1:+4803553 | Msa0712920:three_prime_UTR |
| TGGAGAAGAGGGAGGTGAAT+GGG | 0.376687 | 5_1:-4800308 | None:intergenic |
| GGGCAGAGTGCATAATAAAA+AGG | 0.382577 | 5_1:+4802672 | Msa0712920:CDS |
| ATGGAGAAGAGGGAGGTGAA+TGG | 0.392668 | 5_1:-4800309 | None:intergenic |
| TTTATGATGTATTGCTTGAC+AGG | 0.409824 | 5_1:+4802698 | Msa0712920:CDS |
| ATGGTGGTGGCGCCGGTGAT+CGG | 0.437776 | 5_1:-4800218 | None:intergenic |
| GGTTATTCACAAACTGGAAC+TGG | 0.445405 | 5_1:-4801532 | None:intergenic |
| GGAAGCGAGAGCGTCGAGAA+TGG | 0.455453 | 5_1:-4800328 | None:intergenic |
| GTTTGTTACAGTGCCATAGA+TGG | 0.457604 | 5_1:+4802838 | Msa0712920:intron |
| GGCGGTGATGGTGGTGGCGC+CGG | 0.461908 | 5_1:-4800225 | None:intergenic |
| GAAGCTTCTATTCTTCTCTC+AGG | 0.465319 | 5_1:+4800449 | Msa0712920:CDS |
| TGCCATAGATGGTCCAGATT+CGG | 0.469346 | 5_1:+4802849 | Msa0712920:CDS |
| TGCCATATTGCAGGATTGGC+CGG | 0.472759 | 5_1:+4801508 | Msa0712920:intron |
| AGAAACGGAGCGGGAGGTGG+CGG | 0.475931 | 5_1:-4800261 | None:intergenic |
| CATGATCTAGTCTTTCAACT+AGG | 0.480955 | 5_1:-4801553 | None:intergenic |
| ATATATACAAGCTAAGGTTA+AGG | 0.484532 | 5_1:-4803406 | None:intergenic |
| TGCCAGATTGTACCTTAGCC+AGG | 0.486892 | 5_1:+4802282 | Msa0712920:CDS |
| GTATTAAGGCCTAAAACCTC+TGG | 0.487236 | 5_1:+4803446 | Msa0712920:three_prime_UTR |
| GAGAGAGTGAGAAACGGAGC+GGG | 0.489568 | 5_1:-4800270 | None:intergenic |
| ATAAGACTCGGCTATGGAAT+GGG | 0.490306 | 5_1:+4802652 | Msa0712920:CDS |
| GTGAGAAACGGAGCGGGAGG+TGG | 0.492662 | 5_1:-4800264 | None:intergenic |
| TATAAGACTCGGCTATGGAA+TGG | 0.494787 | 5_1:+4802651 | Msa0712920:CDS |
| GCATACATACCTACAACAAT+GGG | 0.495198 | 5_1:-4801283 | None:intergenic |
| TGCAACATTAATGGCATCTG+AGG | 0.495726 | 5_1:-4802427 | None:intergenic |
| AGCATACATACCTACAACAA+TGG | 0.501223 | 5_1:-4801284 | None:intergenic |
| TTCACAAACTGGAACTGGTC+CGG | 0.513315 | 5_1:-4801527 | None:intergenic |
| TTCTCCATCCAACCGATCAC+CGG | 0.523038 | 5_1:+4800206 | Msa0712920:CDS |
| TTTCTCAAGATTTCTTGTGA+TGG | 0.525235 | 5_1:+4801247 | Msa0712920:CDS |
| AAATCTTCGTAAATCATCTC+AGG | 0.525481 | 5_1:+4803110 | Msa0712920:CDS |
| GGCGCCGGTGATCGGTTGGA+TGG | 0.527500 | 5_1:-4800210 | None:intergenic |
| GAAAAGTGATATTATTAGTG+TGG | 0.530123 | 5_1:+4802395 | Msa0712920:CDS |
| GTGTTGAAATTCCCAAGTAC+AGG | 0.531151 | 5_1:-4803487 | None:intergenic |
| GCAGAAACAATAGCACACTA+TGG | 0.532405 | 5_1:+4801091 | Msa0712920:intron |
| AGCGTCGAGAATGGAGAAGA+GGG | 0.537238 | 5_1:-4800319 | None:intergenic |
| AAGAAGATGAAGATAAAGGT+TGG | 0.538027 | 5_1:-4800134 | None:intergenic |
| TGAATTACATGAAATGAGGA+AGG | 0.546750 | 5_1:-4800363 | None:intergenic |
| TACCTGGCTAAGGTACAATC+TGG | 0.547079 | 5_1:-4802284 | None:intergenic |
| TGGTGGCGCCGGTGATCGGT+TGG | 0.548376 | 5_1:-4800214 | None:intergenic |
| GACGCTATAAGACTCGGCTA+TGG | 0.548905 | 5_1:+4802646 | Msa0712920:CDS |
| TCGTACTTCCACCTGTACTT+GGG | 0.556416 | 5_1:+4803476 | Msa0712920:three_prime_UTR |
| GCAACATTAATGGCATCTGA+GGG | 0.557171 | 5_1:-4802426 | None:intergenic |
| ATTTGTATGATCGGCGGTGA+TGG | 0.560954 | 5_1:-4800237 | None:intergenic |
| GAAGGAGAGAGAGTGAGAAA+CGG | 0.571740 | 5_1:-4800276 | None:intergenic |
| GAGCGTCGAGAATGGAGAAG+AGG | 0.572608 | 5_1:-4800320 | None:intergenic |
| TCCAGAAAATAGCTCGAGAA+GGG | 0.576030 | 5_1:+4801171 | Msa0712920:CDS |
| GAGATGAATTACATGAAATG+AGG | 0.577670 | 5_1:-4800367 | None:intergenic |
| TAATATATATATACAAGCTA+AGG | 0.580612 | 5_1:-4803412 | None:intergenic |
| AGAGTGAGAAACGGAGCGGG+AGG | 0.584013 | 5_1:-4800267 | None:intergenic |
| TGTATGATCGGCGGTGATGG+TGG | 0.586112 | 5_1:-4800234 | None:intergenic |
| GGTGGCGGCATTTGTATGAT+CGG | 0.587953 | 5_1:-4800246 | None:intergenic |
| TATGCATTTAGCTATCAAGC+AGG | 0.596160 | 5_1:+4802900 | Msa0712920:CDS |
| ATAGTAGTTTATTCAGACAA+GGG | 0.597464 | 5_1:+4801194 | Msa0712920:CDS |
| TTGAAATTCCCAAGTACAGG+TGG | 0.597652 | 5_1:-4803484 | None:intergenic |
| TTCACAGACGCTATAAGACT+CGG | 0.599122 | 5_1:+4802640 | Msa0712920:CDS |
| TAATGTTGCAAATAAATGCA+AGG | 0.602512 | 5_1:+4802440 | Msa0712920:CDS |
| AAGTTGTCAATACCTGGCTA+AGG | 0.603032 | 5_1:-4802294 | None:intergenic |
| TTCCAGAAAATAGCTCGAGA+AGG | 0.604172 | 5_1:+4801170 | Msa0712920:CDS |
| CAATAGCACACTATGGAATG+TGG | 0.604628 | 5_1:+4801098 | Msa0712920:CDS |
| GATAGTAGTTTATTCAGACA+AGG | 0.606215 | 5_1:+4801193 | Msa0712920:CDS |
| ATGATCGGCGGTGATGGTGG+TGG | 0.607304 | 5_1:-4800231 | None:intergenic |
| CAGGAAAGATTTAATGACGC+AGG | 0.608205 | 5_1:+4802919 | Msa0712920:CDS |
| AAGATGAAGATAAAGGTTGG+TGG | 0.618582 | 5_1:-4800131 | None:intergenic |
| GTGAATGGGAGAGAAATCGA+AGG | 0.630745 | 5_1:-4800294 | None:intergenic |
| CAACATTAATGGCATCTGAG+GGG | 0.647803 | 5_1:-4802425 | None:intergenic |
| AGAGAGAGTGAGAAACGGAG+CGG | 0.655368 | 5_1:-4800271 | None:intergenic |
| GGCGGCATTTGTATGATCGG+CGG | 0.663489 | 5_1:-4800243 | None:intergenic |
| GTCGAGAATGGAGAAGAGGG+AGG | 0.677739 | 5_1:-4800316 | None:intergenic |
| GAAGTACGAGAATCTTCCAG+AGG | 0.686347 | 5_1:-4803462 | None:intergenic |
| TGAAGTGGAACAAGAGATCG+AGG | 0.688028 | 5_1:+4801415 | Msa0712920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAAATTTTGATTTTTTAA+AGG | + | chr5_1:4802487-4802506 | Msa0712920:intron | 10.0% |
| !!! | AGAAATTTTGATTTTTTAAA+GGG | + | chr5_1:4802488-4802507 | Msa0712920:intron | 10.0% |
| !!! | TTATTTTTACTAGCTTATAA+CGG | - | chr5_1:4800821-4800840 | None:intergenic | 15.0% |
| !! | TTAAGTAATTCAAAATTTCA+GGG | - | chr5_1:4801065-4801084 | None:intergenic | 15.0% |
| !! | TTTAAGTAATTCAAAATTTC+AGG | - | chr5_1:4801066-4801085 | None:intergenic | 15.0% |
| !!! | GAAATTTTGATTTTTTAAAG+GGG | + | chr5_1:4802489-4802508 | Msa0712920:intron | 15.0% |
| !! | CAAATATAAAAATCATAAAG+AGG | - | chr5_1:4802580-4802599 | None:intergenic | 15.0% |
| !! | ATTTCTTTACTTACATATAT+TGG | - | chr5_1:4802616-4802635 | None:intergenic | 15.0% |
| !! | TAATATATATATACAAGCTA+AGG | - | chr5_1:4803415-4803434 | None:intergenic | 15.0% |
| !! | TTATCAAATCAAATGTATTA+AGG | + | chr5_1:4803432-4803451 | Msa0712920:three_prime_UTR | 15.0% |
| !! | TGAAATCATTAAAAGAATTA+TGG | + | chr5_1:4803547-4803566 | Msa0712920:three_prime_UTR | 15.0% |
| !! | TTTGTTCAATTAAGATTACA+AGG | + | chr5_1:4800724-4800743 | Msa0712920:intron | 20.0% |
| !! | ACAAGAATAATACAAAACTA+TGG | - | chr5_1:4800942-4800961 | None:intergenic | 20.0% |
| !!! | TAAATTCGTGTTTTATTGAA+CGG | + | chr5_1:4801344-4801363 | Msa0712920:intron | 20.0% |
| !! | TTATATGTTAGGTATAGTTT+AGG | + | chr5_1:4801679-4801698 | Msa0712920:intron | 20.0% |
| !!! | TAATTCTTTCTGTTTTAGTA+TGG | - | chr5_1:4802042-4802061 | None:intergenic | 20.0% |
| !! | ACTAAAACAGAAAGAATTAT+TGG | + | chr5_1:4802043-4802062 | Msa0712920:intron | 20.0% |
| !! | CAATTTGAATAAAGTTAAAC+AGG | + | chr5_1:4802080-4802099 | Msa0712920:intron | 20.0% |
| !!! | TTGTTTTATTTTACTCTTTC+AGG | + | chr5_1:4802216-4802235 | Msa0712920:intron | 20.0% |
| !! | AAAATCAAAATTTCTTGACA+GGG | - | chr5_1:4802483-4802502 | None:intergenic | 20.0% |
| !! | AAAAATCAAAATTTCTTGAC+AGG | - | chr5_1:4802484-4802503 | None:intergenic | 20.0% |
| !!! | TTTTTATATTTGATTTGTGC+AGG | + | chr5_1:4802588-4802607 | Msa0712920:intron | 20.0% |
| !!! | ATTATGTCTTGAAAATTTTC+CGG | + | chr5_1:4803262-4803281 | Msa0712920:intron | 20.0% |
| ! | AATGAAGAAGATGAAGATAA+AGG | - | chr5_1:4800141-4800160 | None:intergenic | 25.0% |
| !!! | TCTTTTTTCTCTTTCATTTC+AGG | + | chr5_1:4800493-4800512 | Msa0712920:intron | 25.0% |
| !! | TTGTTGTTGTTGAGAAAATT+TGG | + | chr5_1:4800958-4800977 | Msa0712920:intron | 25.0% |
| ! | ATAGTAGTTTATTCAGACAA+GGG | + | chr5_1:4801194-4801213 | Msa0712920:CDS | 25.0% |
| ! | GAAATCTTGAGAAAAATTGT+GGG | - | chr5_1:4801241-4801260 | None:intergenic | 25.0% |
| ! | AGAAATCTTGAGAAAAATTG+TGG | - | chr5_1:4801242-4801261 | None:intergenic | 25.0% |
| !!! | TTTTTTGACCTGTATCTTAA+TGG | + | chr5_1:4801441-4801460 | Msa0712920:intron | 25.0% |
| !! | ATATGGCATTTTATAAGGAT+CGG | - | chr5_1:4801496-4801515 | None:intergenic | 25.0% |
| ! | TGATTCTAAGCTTATATGTT+AGG | + | chr5_1:4801668-4801687 | Msa0712920:intron | 25.0% |
| ! | ATTACATTATACCATCTTCT+TGG | + | chr5_1:4801750-4801769 | Msa0712920:intron | 25.0% |
| ! | AATCAAAATTTCCAAGAAGA+TGG | - | chr5_1:4801764-4801783 | None:intergenic | 25.0% |
| !!! | TGAGAGATTATAGCTTTTTT+GGG | - | chr5_1:4801835-4801854 | None:intergenic | 25.0% |
| !!! | ATGAGAGATTATAGCTTTTT+TGG | - | chr5_1:4801836-4801855 | None:intergenic | 25.0% |
| ! | GATGCAATTAGACTAAATAA+AGG | - | chr5_1:4801948-4801967 | None:intergenic | 25.0% |
| ! | TGAAATTATTTGCATGTAAG+AGG | - | chr5_1:4802107-4802126 | None:intergenic | 25.0% |
| ! | AAAACATTAGAACAAGGATA+AGG | - | chr5_1:4802148-4802167 | None:intergenic | 25.0% |
| ! | ATTTAAAAGTTGTCAATACC+TGG | - | chr5_1:4802303-4802322 | None:intergenic | 25.0% |
| !! | AATGAAAAAGCATAACAAGA+AGG | - | chr5_1:4802334-4802353 | None:intergenic | 25.0% |
| ! | GAAAAGTGATATTATTAGTG+TGG | + | chr5_1:4802395-4802414 | Msa0712920:CDS | 25.0% |
| ! | GCATTTATTTGCAACATTAA+TGG | - | chr5_1:4802439-4802458 | None:intergenic | 25.0% |
| ! | TAATGTTGCAAATAAATGCA+AGG | + | chr5_1:4802440-4802459 | Msa0712920:CDS | 25.0% |
| ! | ATGATATAGCATGAATGTAA+AGG | - | chr5_1:4802799-4802818 | None:intergenic | 25.0% |
| ! | TCAAATTTCAACTATTGAAG+TGG | - | chr5_1:4803178-4803197 | None:intergenic | 25.0% |
| !!! | TTTCCTGATAATTTTTCAAC+AGG | + | chr5_1:4803318-4803337 | Msa0712920:intron | 25.0% |
| ! | ATTCCTGTTGAAAAATTATC+AGG | - | chr5_1:4803324-4803343 | None:intergenic | 25.0% |
| ! | ATATATACAAGCTAAGGTTA+AGG | - | chr5_1:4803409-4803428 | None:intergenic | 25.0% |
| !!! | TTTCATTGATTTTCATGTCA+AGG | - | chr5_1:4803532-4803551 | None:intergenic | 25.0% |
| ! | CATTAAAAGAATTATGGCTT+TGG | + | chr5_1:4803553-4803572 | Msa0712920:three_prime_UTR | 25.0% |
| AAGAAGATGAAGATAAAGGT+TGG | - | chr5_1:4800137-4800156 | None:intergenic | 30.0% | |
| TGAATTACATGAAATGAGGA+AGG | - | chr5_1:4800366-4800385 | None:intergenic | 30.0% | |
| GAGATGAATTACATGAAATG+AGG | - | chr5_1:4800370-4800389 | None:intergenic | 30.0% | |
| AGGTAGAGGGAAAAAAAAAA+AGG | - | chr5_1:4800604-4800623 | None:intergenic | 30.0% | |
| GCTCAATTTATAAAGGTAGA+GGG | - | chr5_1:4800617-4800636 | None:intergenic | 30.0% | |
| CTCTACCTTTATAAATTGAG+CGG | + | chr5_1:4800616-4800635 | Msa0712920:intron | 30.0% | |
| TATTGCCGCTCAATTTATAA+AGG | - | chr5_1:4800624-4800643 | None:intergenic | 30.0% | |
| TTAACATTGAGAGAGAAGTT+AGG | + | chr5_1:4800655-4800674 | Msa0712920:intron | 30.0% | |
| TAACATTGAGAGAGAAGTTA+GGG | + | chr5_1:4800656-4800675 | Msa0712920:intron | 30.0% | |
| ATGACTAAAAAAGACTCGTT+TGG | - | chr5_1:4800873-4800892 | None:intergenic | 30.0% | |
| ATACAAAACTATGGTCTGTT+TGG | - | chr5_1:4800933-4800952 | None:intergenic | 30.0% | |
| AGTGTGTATAATAGTAACTG+TGG | + | chr5_1:4800996-4801015 | Msa0712920:intron | 30.0% | |
| ! | TGTGGTTCTTTTGATCATTT+AGG | + | chr5_1:4801014-4801033 | Msa0712920:intron | 30.0% |
| ! | GTTTTCAATCTGAGTTACAA+CGG | + | chr5_1:4801128-4801147 | Msa0712920:CDS | 30.0% |
| GATAGTAGTTTATTCAGACA+AGG | + | chr5_1:4801193-4801212 | Msa0712920:CDS | 30.0% | |
| TTTCTCAAGATTTCTTGTGA+TGG | + | chr5_1:4801247-4801266 | Msa0712920:CDS | 30.0% | |
| ! | CTGCAATATGGCATTTTATA+AGG | - | chr5_1:4801501-4801520 | None:intergenic | 30.0% |
| CTTATAAAATGCCATATTGC+AGG | + | chr5_1:4801499-4801518 | Msa0712920:intron | 30.0% | |
| AAAGACTAGATCATGAAGTA+TGG | + | chr5_1:4801561-4801580 | Msa0712920:intron | 30.0% | |
| TGATTTATTCTATGACCTAG+TGG | - | chr5_1:4801900-4801919 | None:intergenic | 30.0% | |
| ATTAGAACAAGGATAAGGAT+GGG | - | chr5_1:4802143-4802162 | None:intergenic | 30.0% | |
| TGCTTCAAAACATTAGAACA+AGG | - | chr5_1:4802154-4802173 | None:intergenic | 30.0% | |
| TTGAAGCAATAGCAATGTAT+TGG | + | chr5_1:4802166-4802185 | Msa0712920:intron | 30.0% | |
| TGAAGCAATAGCAATGTATT+GGG | + | chr5_1:4802167-4802186 | Msa0712920:intron | 30.0% | |
| ! | TTTACTCTTTCAGGTGATAA+TGG | + | chr5_1:4802225-4802244 | Msa0712920:intron | 30.0% |
| !! | CTAATAATATCACTTTTCCC+TGG | - | chr5_1:4802393-4802412 | None:intergenic | 30.0% |
| TGTCTAACTTCAAAATGCTT+AGG | - | chr5_1:4802554-4802573 | None:intergenic | 30.0% | |
| TTTATGATGTATTGCTTGAC+AGG | + | chr5_1:4802698-4802717 | Msa0712920:CDS | 30.0% | |
| ATATAGCATGAATGTAAAGG+AGG | - | chr5_1:4802796-4802815 | None:intergenic | 30.0% | |
| ACGCAGGTAAAATATTGTTT+GGG | + | chr5_1:4802935-4802954 | Msa0712920:intron | 30.0% | |
| TTACACATCTGCAAGTATTA+TGG | + | chr5_1:4802978-4802997 | Msa0712920:intron | 30.0% | |
| AAAAGTCAACAAACAAGCTT+AGG | - | chr5_1:4803064-4803083 | None:intergenic | 30.0% | |
| AAATCTTCGTAAATCATCTC+AGG | + | chr5_1:4803110-4803129 | Msa0712920:CDS | 30.0% | |
| !! | TTTTTCAACAGGAATTACTG+CGG | + | chr5_1:4803329-4803348 | Msa0712920:intron | 30.0% |
| AAGATGAAGATAAAGGTTGG+TGG | - | chr5_1:4800134-4800153 | None:intergenic | 35.0% | |
| CATGAAATGAGGAAGGATTT+GGG | - | chr5_1:4800359-4800378 | None:intergenic | 35.0% | |
| ACATGAAATGAGGAAGGATT+TGG | - | chr5_1:4800360-4800379 | None:intergenic | 35.0% | |
| GTTATGATGATCGCTGAAAT+TGG | - | chr5_1:4800402-4800421 | None:intergenic | 35.0% | |
| CGCTCAATTTATAAAGGTAG+AGG | - | chr5_1:4800618-4800637 | None:intergenic | 35.0% | |
| !! | ATTTTCTGGAAATGGTGACA+CGG | - | chr5_1:4801161-4801180 | None:intergenic | 35.0% |
| GCATACATACCTACAACAAT+GGG | - | chr5_1:4801286-4801305 | None:intergenic | 35.0% | |
| AGCATACATACCTACAACAA+TGG | - | chr5_1:4801287-4801306 | None:intergenic | 35.0% | |
| ! | AAAGCTTTTAGATGCTGAAG+TGG | + | chr5_1:4801400-4801419 | Msa0712920:CDS | 35.0% |
| AAAATGCCATATTGCAGGAT+TGG | + | chr5_1:4801504-4801523 | Msa0712920:intron | 35.0% | |
| CAACTAGGTTATTCACAAAC+TGG | - | chr5_1:4801541-4801560 | None:intergenic | 35.0% | |
| ! | CATGATCTAGTCTTTCAACT+AGG | - | chr5_1:4801556-4801575 | None:intergenic | 35.0% |
| TGGATGGGTACAATATGATT+TGG | - | chr5_1:4801880-4801899 | None:intergenic | 35.0% | |
| ! | TATTCTATGACCTAGTGGAT+GGG | - | chr5_1:4801895-4801914 | None:intergenic | 35.0% |
| TTATTCTATGACCTAGTGGA+TGG | - | chr5_1:4801896-4801915 | None:intergenic | 35.0% | |
| CATTAGAACAAGGATAAGGA+TGG | - | chr5_1:4802144-4802163 | None:intergenic | 35.0% | |
| AGTTTATAATTCCTTCAGCC+AGG | + | chr5_1:4802372-4802391 | Msa0712920:intron | 35.0% | |
| GTTTATAATTCCTTCAGCCA+GGG | + | chr5_1:4802373-4802392 | Msa0712920:intron | 35.0% | |
| AAACTTGCACACAGAATCTA+TGG | - | chr5_1:4802773-4802792 | None:intergenic | 35.0% | |
| TATGCATTTAGCTATCAAGC+AGG | + | chr5_1:4802900-4802919 | Msa0712920:CDS | 35.0% | |
| GACGCAGGTAAAATATTGTT+TGG | + | chr5_1:4802934-4802953 | Msa0712920:intron | 35.0% | |
| AAGCTTGAATACCCAAATCT+TGG | + | chr5_1:4803022-4803041 | Msa0712920:intron | 35.0% | |
| CCATGAAAATGCCAAGATTT+GGG | - | chr5_1:4803036-4803055 | None:intergenic | 35.0% | |
| TCCATGAAAATGCCAAGATT+TGG | - | chr5_1:4803037-4803056 | None:intergenic | 35.0% | |
| ! | ATGTCTTGAAAATTTTCCGG+TGG | + | chr5_1:4803265-4803284 | Msa0712920:intron | 35.0% |
| !! | AAGTTCTGAAGAGGAACTTA+TGG | + | chr5_1:4803289-4803308 | Msa0712920:intron | 35.0% |
| ! | TGAGGAAGGATTTGGGTTTA+TGG | - | chr5_1:4800352-4800371 | None:intergenic | 40.0% |
| GAAGCTTCTATTCTTCTCTC+AGG | + | chr5_1:4800449-4800468 | Msa0712920:CDS | 40.0% | |
| TCAGGGATTCATACACATCA+TGG | - | chr5_1:4801048-4801067 | None:intergenic | 40.0% | |
| GCAGAAACAATAGCACACTA+TGG | + | chr5_1:4801091-4801110 | Msa0712920:intron | 40.0% | |
| CAATAGCACACTATGGAATG+TGG | + | chr5_1:4801098-4801117 | Msa0712920:CDS | 40.0% | |
| !! | TTTTCTGGAAATGGTGACAC+GGG | - | chr5_1:4801160-4801179 | None:intergenic | 40.0% |
| !! | CTCGAGCTATTTTCTGGAAA+TGG | - | chr5_1:4801169-4801188 | None:intergenic | 40.0% |
| TTCCAGAAAATAGCTCGAGA+AGG | + | chr5_1:4801170-4801189 | Msa0712920:CDS | 40.0% | |
| TCCAGAAAATAGCTCGAGAA+GGG | + | chr5_1:4801171-4801190 | Msa0712920:CDS | 40.0% | |
| TATGTTCTGCCCATTGTTGT+AGG | + | chr5_1:4801274-4801293 | Msa0712920:CDS | 40.0% | |
| TATGTATGCTATGCCGTGAT+AGG | + | chr5_1:4801297-4801316 | Msa0712920:intron | 40.0% | |
| CATCGATGCATATCCTATCA+CGG | - | chr5_1:4801313-4801332 | None:intergenic | 40.0% | |
| ! | AACGGTTCTTTTGTTGATGC+AGG | + | chr5_1:4801362-4801381 | Msa0712920:intron | 40.0% |
| GTGCACAACCATTAAGATAC+AGG | - | chr5_1:4801452-4801471 | None:intergenic | 40.0% | |
| GGTTATTCACAAACTGGAAC+TGG | - | chr5_1:4801535-4801554 | None:intergenic | 40.0% | |
| GCCAATGAACATTCAAGCAT+TGG | + | chr5_1:4801612-4801631 | Msa0712920:intron | 40.0% | |
| GCCAATGCTTGAATGTTCAT+TGG | - | chr5_1:4801616-4801635 | None:intergenic | 40.0% | |
| !!! | AGCTTTTTTGGGAGTTCTCA+TGG | - | chr5_1:4801824-4801843 | None:intergenic | 40.0% |
| TCATATTGTACCCATCCACT+AGG | + | chr5_1:4801882-4801901 | Msa0712920:intron | 40.0% | |
| TGCATCATTAGTCCTTCTCA+AGG | + | chr5_1:4801962-4801981 | Msa0712920:intron | 40.0% | |
| AAGTTGTCAATACCTGGCTA+AGG | - | chr5_1:4802297-4802316 | None:intergenic | 40.0% | |
| CAACATTAATGGCATCTGAG+GGG | - | chr5_1:4802428-4802447 | None:intergenic | 40.0% | |
| GCAACATTAATGGCATCTGA+GGG | - | chr5_1:4802429-4802448 | None:intergenic | 40.0% | |
| TGCAACATTAATGGCATCTG+AGG | - | chr5_1:4802430-4802449 | None:intergenic | 40.0% | |
| TTCACAGACGCTATAAGACT+CGG | + | chr5_1:4802640-4802659 | Msa0712920:CDS | 40.0% | |
| TATAAGACTCGGCTATGGAA+TGG | + | chr5_1:4802651-4802670 | Msa0712920:CDS | 40.0% | |
| ATAAGACTCGGCTATGGAAT+GGG | + | chr5_1:4802652-4802671 | Msa0712920:CDS | 40.0% | |
| GGGCAGAGTGCATAATAAAA+AGG | + | chr5_1:4802672-4802691 | Msa0712920:CDS | 40.0% | |
| ! | GTTTGTTACAGTGCCATAGA+TGG | + | chr5_1:4802838-4802857 | Msa0712920:intron | 40.0% |
| CAGGAAAGATTTAATGACGC+AGG | + | chr5_1:4802919-4802938 | Msa0712920:CDS | 40.0% | |
| ! | CCCAAATCTTGGCATTTTCA+TGG | + | chr5_1:4803033-4803052 | Msa0712920:intron | 40.0% |
| !!! | TGTTGACTTTTGCAGCTACA+TGG | + | chr5_1:4803073-4803092 | Msa0712920:intron | 40.0% |
| !! | TCATCTCAGGAGCACTAATT+AGG | + | chr5_1:4803123-4803142 | Msa0712920:exon | 40.0% |
| ! | GGAGCACTAATTAGGTTGTT+AGG | + | chr5_1:4803131-4803150 | Msa0712920:exon | 40.0% |
| GTATTAAGGCCTAAAACCTC+TGG | + | chr5_1:4803446-4803465 | Msa0712920:three_prime_UTR | 40.0% | |
| ! | GAGAATCTTCCAGAGGTTTT+AGG | - | chr5_1:4803458-4803477 | None:intergenic | 40.0% |
| TTGAAATTCCCAAGTACAGG+TGG | - | chr5_1:4803487-4803506 | None:intergenic | 40.0% | |
| GTGTTGAAATTCCCAAGTAC+AGG | - | chr5_1:4803490-4803509 | None:intergenic | 40.0% | |
| ATTTGTATGATCGGCGGTGA+TGG | - | chr5_1:4800240-4800259 | None:intergenic | 45.0% | |
| GAAGGAGAGAGAGTGAGAAA+CGG | - | chr5_1:4800279-4800298 | None:intergenic | 45.0% | |
| GTGAATGGGAGAGAAATCGA+AGG | - | chr5_1:4800297-4800316 | None:intergenic | 45.0% | |
| AGAGTGTGAGAGAGAGAAAG+AGG | - | chr5_1:4800476-4800495 | None:intergenic | 45.0% | |
| !! | TCCCTTCTCGAGCTATTTTC+TGG | - | chr5_1:4801175-4801194 | None:intergenic | 45.0% |
| TGAAGTGGAACAAGAGATCG+AGG | + | chr5_1:4801415-4801434 | Msa0712920:CDS | 45.0% | |
| TTCACAAACTGGAACTGGTC+CGG | - | chr5_1:4801530-4801549 | None:intergenic | 45.0% | |
| CTCACACAATGTCCTTGAGA+AGG | - | chr5_1:4801977-4801996 | None:intergenic | 45.0% | |
| TACCTGGCTAAGGTACAATC+TGG | - | chr5_1:4802287-4802306 | None:intergenic | 45.0% | |
| !! | TATCACTTTTCCCTGGCTGA+AGG | - | chr5_1:4802386-4802405 | None:intergenic | 45.0% |
| ACACAGAATCTATGGTGGCA+AGG | - | chr5_1:4802765-4802784 | None:intergenic | 45.0% | |
| CTTGCACACAGAATCTATGG+TGG | - | chr5_1:4802770-4802789 | None:intergenic | 45.0% | |
| TGCCATAGATGGTCCAGATT+CGG | + | chr5_1:4802849-4802868 | Msa0712920:CDS | 45.0% | |
| TACCGAATCTGGACCATCTA+TGG | - | chr5_1:4802854-4802873 | None:intergenic | 45.0% | |
| AGTTCTTGAGCTACCGAATC+TGG | - | chr5_1:4802865-4802884 | None:intergenic | 45.0% | |
| TGGGTATTCAAGCTTGCAGA+AGG | - | chr5_1:4803017-4803036 | None:intergenic | 45.0% | |
| TCCTCTTCAGAACTTACCAC+CGG | - | chr5_1:4803284-4803303 | None:intergenic | 45.0% | |
| GAAGTACGAGAATCTTCCAG+AGG | - | chr5_1:4803465-4803484 | None:intergenic | 45.0% | |
| TCGTACTTCCACCTGTACTT+GGG | + | chr5_1:4803476-4803495 | Msa0712920:three_prime_UTR | 45.0% | |
| TTCTCCATCCAACCGATCAC+CGG | + | chr5_1:4800206-4800225 | Msa0712920:CDS | 50.0% | |
| ! | GGTGGCGGCATTTGTATGAT+CGG | - | chr5_1:4800249-4800268 | None:intergenic | 50.0% |
| AGAGAGAGTGAGAAACGGAG+CGG | - | chr5_1:4800274-4800293 | None:intergenic | 50.0% | |
| TGGAGAAGAGGGAGGTGAAT+GGG | - | chr5_1:4800311-4800330 | None:intergenic | 50.0% | |
| ATGGAGAAGAGGGAGGTGAA+TGG | - | chr5_1:4800312-4800331 | None:intergenic | 50.0% | |
| ! | AGCGTCGAGAATGGAGAAGA+GGG | - | chr5_1:4800322-4800341 | None:intergenic | 50.0% |
| ! | TGCCATATTGCAGGATTGGC+CGG | + | chr5_1:4801508-4801527 | Msa0712920:intron | 50.0% |
| TGCCAGATTGTACCTTAGCC+AGG | + | chr5_1:4802282-4802301 | Msa0712920:CDS | 50.0% | |
| GACGCTATAAGACTCGGCTA+TGG | + | chr5_1:4802646-4802665 | Msa0712920:CDS | 50.0% | |
| CAAGGATGCTACAGGTGACA+CGG | - | chr5_1:4802747-4802766 | None:intergenic | 50.0% | |
| TATGGTGGCAAGGATGCTAC+AGG | - | chr5_1:4802755-4802774 | None:intergenic | 50.0% | |
| !! | TCCGGTGGTAAGTTCTGAAG+AGG | + | chr5_1:4803280-4803299 | Msa0712920:intron | 50.0% |
| CTCGTACTTCCACCTGTACT+TGG | + | chr5_1:4803475-4803494 | Msa0712920:three_prime_UTR | 50.0% | |
| ! | TGTATGATCGGCGGTGATGG+TGG | - | chr5_1:4800237-4800256 | None:intergenic | 55.0% |
| GGCGGCATTTGTATGATCGG+CGG | - | chr5_1:4800246-4800265 | None:intergenic | 55.0% | |
| GAGAGAGTGAGAAACGGAGC+GGG | - | chr5_1:4800273-4800292 | None:intergenic | 55.0% | |
| GTCGAGAATGGAGAAGAGGG+AGG | - | chr5_1:4800319-4800338 | None:intergenic | 55.0% | |
| !! | GAGCGTCGAGAATGGAGAAG+AGG | - | chr5_1:4800323-4800342 | None:intergenic | 55.0% |
| GTCCGGCCAATCCTGCAATA+TGG | - | chr5_1:4801513-4801532 | None:intergenic | 55.0% | |
| !! | ATGATCGGCGGTGATGGTGG+TGG | - | chr5_1:4800234-4800253 | None:intergenic | 60.0% |
| AGAGTGAGAAACGGAGCGGG+AGG | - | chr5_1:4800270-4800289 | None:intergenic | 60.0% | |
| !! | GGAAGCGAGAGCGTCGAGAA+TGG | - | chr5_1:4800331-4800350 | None:intergenic | 60.0% |
| !! | ATGGTGGTGGCGCCGGTGAT+CGG | - | chr5_1:4800221-4800240 | None:intergenic | 65.0% |
| AGAAACGGAGCGGGAGGTGG+CGG | - | chr5_1:4800264-4800283 | None:intergenic | 65.0% | |
| GTGAGAAACGGAGCGGGAGG+TGG | - | chr5_1:4800267-4800286 | None:intergenic | 65.0% | |
| !! | GGCGCCGGTGATCGGTTGGA+TGG | - | chr5_1:4800213-4800232 | None:intergenic | 70.0% |
| !! | TGGTGGCGCCGGTGATCGGT+TGG | - | chr5_1:4800217-4800236 | None:intergenic | 70.0% |
| !! | GGCGGTGATGGTGGTGGCGC+CGG | - | chr5_1:4800228-4800247 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 4800094 | 4803597 | 4800094 | ID=Msa0712920;Name=Msa0712920 |
| chr5_1 | mRNA | 4800094 | 4803597 | 4800094 | ID=Msa0712920-mRNA-1;Parent=Msa0712920;Name=Msa0712920-mRNA-1;_AED=0.21;_eAED=0.21;_QI=97|1|1|1|0.88|0.8|10|270|327 |
| chr5_1 | exon | 4800094 | 4800470 | 4800094 | ID=Msa0712920-mRNA-1:exon:2034;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4801095 | 4801295 | 4801095 | ID=Msa0712920-mRNA-1:exon:2035;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4801384 | 4801436 | 4801384 | ID=Msa0712920-mRNA-1:exon:2036;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4801521 | 4801577 | 4801521 | ID=Msa0712920-mRNA-1:exon:2037;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4802238 | 4802303 | 4802238 | ID=Msa0712920-mRNA-1:exon:2038;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4802390 | 4802461 | 4802390 | ID=Msa0712920-mRNA-1:exon:2039;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4802610 | 4802719 | 4802610 | ID=Msa0712920-mRNA-1:exon:2040;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4802849 | 4802940 | 4802849 | ID=Msa0712920-mRNA-1:exon:2041;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4803088 | 4803152 | 4803088 | ID=Msa0712920-mRNA-1:exon:2042;Parent=Msa0712920-mRNA-1 |
| chr5_1 | exon | 4803340 | 4803597 | 4803340 | ID=Msa0712920-mRNA-1:exon:2043;Parent=Msa0712920-mRNA-1 |
| chr5_1 | five_prime_UTR | 4800094 | 4800190 | 4800094 | ID=Msa0712920-mRNA-1:five_prime_utr;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4800191 | 4800470 | 4800191 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4801095 | 4801295 | 4801095 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4801384 | 4801436 | 4801384 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4801521 | 4801577 | 4801521 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4802238 | 4802303 | 4802238 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4802390 | 4802461 | 4802390 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4802610 | 4802719 | 4802610 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4802849 | 4802940 | 4802849 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | CDS | 4803088 | 4803140 | 4803088 | ID=Msa0712920-mRNA-1:cds;Parent=Msa0712920-mRNA-1 |
| chr5_1 | three_prime_UTR | 4803141 | 4803152 | 4803141 | ID=Msa0712920-mRNA-1:three_prime_utr;Parent=Msa0712920-mRNA-1 |
| chr5_1 | three_prime_UTR | 4803340 | 4803597 | 4803340 | ID=Msa0712920-mRNA-1:three_prime_utr;Parent=Msa0712920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
