AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1220290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220290 MtrunA17_Chr4g0071301 92.378 328 16 4 1 320 7 333 0.0 526
Msa1220290 MtrunA17_Chr2g0299081 45.758 330 130 15 1 320 6 296 1.32e-48 164
Msa1220290 MtrunA17_Chr1g0151461 46.000 150 56 4 122 249 108 254 2.21e-26 106
Msa1220290 MtrunA17_Chr4g0068031 35.333 150 67 4 172 319 22 143 8.95e-19 81.6
Msa1220290 MtrunA17_Chr7g0271861 35.000 140 58 5 180 319 22 128 1.17e-14 69.7
Msa1220290 MtrunA17_Chr5g0404131 53.448 58 27 0 159 216 171 228 3.71e-14 72.0
Msa1220290 MtrunA17_Chr8g0373231 70.270 37 11 0 180 216 125 161 1.59e-12 66.2
Msa1220290 MtrunA17_Chr1g0213161 54.762 42 19 0 174 215 146 187 1.05e-11 63.9
Msa1220290 MtrunA17_Chr2g0326771 44.000 75 40 1 168 242 204 276 3.79e-11 63.2
Msa1220290 MtrunA17_Chr5g0404981 40.244 82 44 2 180 258 300 379 6.63e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220290 AT4G26150.1 43.673 245 116 5 91 320 115 352 3.49e-39 141
Msa1220290 AT5G56860.1 44.444 153 54 5 91 213 112 263 5.92e-24 101
Msa1220290 AT5G49300.1 36.424 151 57 5 169 319 27 138 3.52e-18 80.1
Msa1220290 AT5G26930.1 75.610 41 10 0 177 217 23 63 4.33e-17 76.6
Msa1220290 AT3G06740.1 37.037 135 52 5 182 316 43 144 3.27e-15 72.4
Msa1220290 AT4G36620.1 50.769 65 25 1 180 237 75 139 1.44e-14 72.0
Msa1220290 AT3G16870.1 70.000 40 12 0 178 217 40 79 1.02e-13 68.9
Msa1220290 AT4G16141.1 67.500 40 13 0 178 217 35 74 1.88e-13 68.6
Msa1220290 AT3G50870.1 65.909 44 15 0 180 223 152 195 1.98e-13 70.1
Msa1220290 AT2G18380.1 66.667 45 14 1 176 219 88 132 2.58e-13 68.2
Msa1220290 AT1G08010.2 39.773 88 50 2 172 259 212 296 5.92e-13 68.9
Msa1220290 AT1G08010.1 39.773 88 50 2 172 259 212 296 5.92e-13 68.9
Msa1220290 AT1G08010.3 39.773 88 50 2 172 259 212 296 5.92e-13 68.9
Msa1220290 AT1G08000.2 38.636 88 50 2 172 259 210 293 2.83e-12 66.6
Msa1220290 AT1G08000.1 38.636 88 50 2 172 259 210 293 2.83e-12 66.6
Msa1220290 AT3G45170.1 41.096 73 42 1 178 250 113 184 6.09e-11 61.6

Find 91 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAATAATTATTCAACTATT+AGG 0.137638 8_1:-83346395 Msa1220290:CDS
TGAACAATCAAACTCAATTT+TGG 0.139942 8_1:+83345858 None:intergenic
ATTAAGCTTGAGTGAGAATT+TGG 0.175716 8_1:-83345749 Msa1220290:CDS
CTTCTCATGGCGTTATCTTA+TGG 0.189112 8_1:-83345682 Msa1220290:CDS
TGAATTTGATTAATGGTTTA+TGG 0.211015 8_1:-83345544 Msa1220290:three_prime_UTR
TCTATCTATTTATCTTAATT+AGG 0.221100 8_1:-83345580 Msa1220290:three_prime_UTR
ATTAGTTTGAATTTGATTAA+TGG 0.224358 8_1:-83345551 Msa1220290:three_prime_UTR
GAAAATGAAGAAGAAGAATT+TGG 0.264622 8_1:+83346960 None:intergenic
ATTTCAGATCATCATTTATC+TGG 0.272963 8_1:+83345483 None:intergenic
CAATAATTATTCAACTATTA+GGG 0.315780 8_1:-83346394 Msa1220290:CDS
TAAATGATGATCTGAAATTA+AGG 0.316793 8_1:-83345478 Msa1220290:three_prime_UTR
GTTTATGGTGTACGAGAATA+AGG 0.329115 8_1:-83345529 Msa1220290:three_prime_UTR
TAATCCTCTTTATATATTAG+TGG 0.329381 8_1:-83347201 Msa1220290:five_prime_UTR
CATGGTTGAGCTTAGTTCAT+TGG 0.347796 8_1:-83345652 Msa1220290:exon
GGATTAAGAGAGGGAGAGAA+TGG 0.356145 8_1:+83347218 None:intergenic
GCTGCTGCAGCATCGGCAAA+TGG 0.369424 8_1:-83345949 Msa1220290:CDS
ACACCACTAAGACCCCTCTT+TGG 0.413595 8_1:-83346356 Msa1220290:CDS
ATGTATACCTTTGGGCCTCT+TGG 0.416802 8_1:+83346324 None:intergenic
TTAAGCTTGAGTGAGAATTT+GGG 0.418107 8_1:-83345748 Msa1220290:CDS
AAGGAAGGCAAGACGTGCTT+TGG 0.419438 8_1:-83345974 Msa1220290:CDS
CTTGATCTTGTGAGTCTAAG+AGG 0.434136 8_1:+83346913 None:intergenic
TCCTTTCTACTTTGATGAGA+TGG 0.448401 8_1:+83345796 None:intergenic
CACTATATGACGAGTAGGCC+TGG 0.449445 8_1:-83347276 None:intergenic
ATAAGGTGGTGGTATCATAT+TGG 0.451686 8_1:+83347043 None:intergenic
CCTCCAAAGAGGGGTCTTAG+TGG 0.452583 8_1:+83346353 None:intergenic
GATGATGGTTTCTGATCAAA+CGG 0.456924 8_1:-83346508 Msa1220290:CDS
TTGTCCACTAATATATAAAG+AGG 0.459438 8_1:+83347197 None:intergenic
GATTAAGAGAGGGAGAGAAT+GGG 0.467292 8_1:+83347219 None:intergenic
ATCAAGGCTGAGAGAATTGA+AGG 0.468455 8_1:+83347093 None:intergenic
TTGGTCCACTCCTCCAAAGA+GGG 0.473441 8_1:+83346343 None:intergenic
AAAATCACACTACCTTCATC+TGG 0.475551 8_1:+83345416 None:intergenic
TGATCTTGATTAAGATCAAA+GGG 0.497131 8_1:+83347002 None:intergenic
AAGAAGAATTTGGACTAGAA+AGG 0.497380 8_1:+83346970 None:intergenic
TGAATCAGTGCAAGCAAAGT+AGG 0.497607 8_1:+83347127 None:intergenic
ATTAAGATCAAAGGGCTTGA+CGG 0.498526 8_1:+83347010 None:intergenic
TTATCTTATGGATTAGTCCA+TGG 0.502722 8_1:-83345670 Msa1220290:CDS
ATAAGGTGCAATAAAGTTAG+TGG 0.508966 8_1:-83345512 Msa1220290:three_prime_UTR
ATATTCCCTCAAGTGGATCA+TGG 0.512325 8_1:-83346698 Msa1220290:CDS
GAGAATAATGAAGAAGATGA+TGG 0.517661 8_1:-83346523 Msa1220290:CDS
TTTGGCTGCTGCTGCAGCAT+CGG 0.517772 8_1:-83345956 Msa1220290:CDS
TTGATCTTGATTAAGATCAA+AGG 0.518492 8_1:+83347001 None:intergenic
CCACTAAGACCCCTCTTTGG+AGG 0.522269 8_1:-83346353 Msa1220290:CDS
ACCATCTCATCAAAGTAGAA+AGG 0.524256 8_1:-83345797 Msa1220290:CDS
GAATTCCATGATCCACTTGA+GGG 0.524546 8_1:+83346693 None:intergenic
TGATCTTAATTAGGTTGAGA+AGG 0.524769 8_1:-83346724 Msa1220290:intron
TACTTTACCTCTTGATCATG+TGG 0.541831 8_1:+83346852 None:intergenic
AACACAAGCTGACAATTCGT+TGG 0.542076 8_1:-83346635 Msa1220290:CDS
GGTGGTATCATATTGGATGA+TGG 0.543870 8_1:+83347050 None:intergenic
TATATGCAACTGAAATGAAA+CGG 0.545478 8_1:+83347154 None:intergenic
ATTTAAGAATATCGTTCACT+AGG 0.549874 8_1:-83345625 Msa1220290:three_prime_UTR
TAAGGTGCAATAAAGTTAGT+GGG 0.550524 8_1:-83345511 Msa1220290:three_prime_UTR
ATGATCTGAAATTAAGGTGA+AGG 0.552439 8_1:-83345472 Msa1220290:three_prime_UTR
ATAGACACATAAAATAATCA+AGG 0.555018 8_1:+83347077 None:intergenic
TATATAAAGAGGATTAAGAG+AGG 0.556090 8_1:+83347208 None:intergenic
CAGTCACTTTGCAACGCATG+TGG 0.556816 8_1:-83346006 Msa1220290:CDS
AATTTGGACTAGAAAGGTCA+TGG 0.556899 8_1:+83346976 None:intergenic
AAGGTTAATATTCCCTCAAG+TGG 0.557779 8_1:-83346705 Msa1220290:CDS
CAACTTACCACATGATCAAG+AGG 0.559110 8_1:-83346859 Msa1220290:intron
TGTGGCAACATGTCTACTCC+AGG 0.569731 8_1:+83347258 None:intergenic
ATATAAAGAGGATTAAGAGA+GGG 0.569780 8_1:+83347209 None:intergenic
CTTGGTCCACTCCTCCAAAG+AGG 0.571639 8_1:+83346342 None:intergenic
TAAGAAATAGATGAACAAGA+TGG 0.573682 8_1:+83345294 None:intergenic
AGAGGCTGCAATCCTTCTCA+TGG 0.574547 8_1:-83345695 Msa1220290:CDS
AGAATTCCATGATCCACTTG+AGG 0.579212 8_1:+83346692 None:intergenic
TTTCCCTCAGGATGAGAGAG+AGG 0.585586 8_1:-83345713 Msa1220290:CDS
ATGATGGTTTCTGATCAAAC+GGG 0.587005 8_1:-83346507 Msa1220290:CDS
GGATCATCACAAGATATATG+TGG 0.588754 8_1:+83347240 None:intergenic
GTATCGTTGTAACCAGATGA+AGG 0.590887 8_1:-83345428 Msa1220290:three_prime_UTR
AAGACCCCTCTTTGGAGGAG+TGG 0.591299 8_1:-83346348 Msa1220290:CDS
ATGTGGGATTAGACAAAGGA+AGG 0.591436 8_1:-83345989 Msa1220290:CDS
CTGCTATTATCTGTTCCTTG+TGG 0.602551 8_1:+83346420 None:intergenic
CAGCCTCTCTCTCATCCTGA+GGG 0.608306 8_1:+83345710 None:intergenic
GCAGCCTCTCTCTCATCCTG+AGG 0.609935 8_1:+83345709 None:intergenic
TGATCATGAGGATGGTACTT+CGG 0.612710 8_1:-83346568 Msa1220290:CDS
CAAGAAGCTGATCATGAGGA+TGG 0.614482 8_1:-83346576 Msa1220290:CDS
AGGATGGTACTTCGGTGAAG+TGG 0.614786 8_1:-83346560 Msa1220290:CDS
TTGATCTTGTGAGTCTAAGA+GGG 0.615407 8_1:+83346914 None:intergenic
CATAAGATAACGCCATGAGA+AGG 0.615895 8_1:+83345683 None:intergenic
TAATCAAGAAGCTGATCATG+AGG 0.617008 8_1:-83346580 Msa1220290:CDS
GAGTGGACCAAGAGGCCCAA+AGG 0.618470 8_1:-83346331 Msa1220290:intron
CAATGAACTAAGCTCAACCA+TGG 0.619076 8_1:+83345653 None:intergenic
TGGTCCACTCCTCCAAAGAG+GGG 0.619610 8_1:+83346344 None:intergenic
TCTGTTCCTTGTGGTGACAG+TGG 0.621928 8_1:+83346429 None:intergenic
TCAAGGCTGAGAGAATTGAA+GGG 0.632144 8_1:+83347094 None:intergenic
TTGACGGACGAAGATAGATA+AGG 0.632473 8_1:+83347026 None:intergenic
GACGAAGATAGATAAGGTGG+TGG 0.639273 8_1:+83347032 None:intergenic
AGTCACTTTGCAACGCATGT+GGG 0.651862 8_1:-83346005 Msa1220290:CDS
AAGCAACCACTGTCACCACA+AGG 0.654177 8_1:-83346435 Msa1220290:CDS
ACGGACGAAGATAGATAAGG+TGG 0.673417 8_1:+83347029 None:intergenic
ACGCATGTGGGATTAGACAA+AGG 0.678808 8_1:-83345993 Msa1220290:CDS
CTTTGGAGGAGTGGACCAAG+AGG 0.682089 8_1:-83346339 Msa1220290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGATTTTGAATATAAA+GGG + chr8_1:83346227-83346246 None:intergenic 10.0%
!!! TAATTTGATTTTGAATATAA+AGG + chr8_1:83346228-83346247 None:intergenic 10.0%
!! AAATTAATAAAGTATATGTT+TGG - chr8_1:83346242-83346261 Msa1220290:intron 10.0%
!!! AATTTGATTTTGAATATAAA+GGG + chr8_1:83346227-83346246 None:intergenic 10.0%
!!! TAATTTGATTTTGAATATAA+AGG + chr8_1:83346228-83346247 None:intergenic 10.0%
!! AAATTAATAAAGTATATGTT+TGG - chr8_1:83346242-83346261 Msa1220290:intron 10.0%
!! ACATCATCAAATTAATTAAA+GGG + chr8_1:83345766-83345785 None:intergenic 15.0%
!! CAATAATTATTCAACTATTA+GGG - chr8_1:83346115-83346134 Msa1220290:intron 15.0%
!!! TTTAGAATGTTGTAAATTTA+GGG + chr8_1:83346360-83346379 None:intergenic 15.0%
!!! TTTTAGAATGTTGTAAATTT+AGG + chr8_1:83346361-83346380 None:intergenic 15.0%
!!! AAAATGTTTTTCTATTTGTT+AGG - chr8_1:83346377-83346396 Msa1220290:CDS 15.0%
!! TCTATCTATTTATCTTAATT+AGG - chr8_1:83346929-83346948 Msa1220290:CDS 15.0%
!!! ATTAGTTTGAATTTGATTAA+TGG - chr8_1:83346958-83346977 Msa1220290:CDS 15.0%
!! ACATCATCAAATTAATTAAA+GGG + chr8_1:83345766-83345785 None:intergenic 15.0%
!! CAATAATTATTCAACTATTA+GGG - chr8_1:83346115-83346134 Msa1220290:intron 15.0%
!!! TTTAGAATGTTGTAAATTTA+GGG + chr8_1:83346360-83346379 None:intergenic 15.0%
!!! TTTTAGAATGTTGTAAATTT+AGG + chr8_1:83346361-83346380 None:intergenic 15.0%
!!! AAAATGTTTTTCTATTTGTT+AGG - chr8_1:83346377-83346396 Msa1220290:CDS 15.0%
!! TCTATCTATTTATCTTAATT+AGG - chr8_1:83346929-83346948 Msa1220290:CDS 15.0%
!!! ATTAGTTTGAATTTGATTAA+TGG - chr8_1:83346958-83346977 Msa1220290:CDS 15.0%
!! TAATCCTCTTTATATATTAG+TGG - chr8_1:83345308-83345327 Msa1220290:three_prime_UTR 20.0%
!! ATAGACACATAAAATAATCA+AGG + chr8_1:83345435-83345454 None:intergenic 20.0%
!! CATCATCAAATTAATTAAAG+GGG + chr8_1:83345765-83345784 None:intergenic 20.0%
!! CACATCATCAAATTAATTAA+AGG + chr8_1:83345767-83345786 None:intergenic 20.0%
!! GCAATAATTATTCAACTATT+AGG - chr8_1:83346114-83346133 Msa1220290:intron 20.0%
!! GTTGAATTGAATCTTTAATT+TGG + chr8_1:83346284-83346303 None:intergenic 20.0%
!!! AATACAAAGTGATTGTTTTA+GGG + chr8_1:83346306-83346325 None:intergenic 20.0%
!!! TAATACAAAGTGATTGTTTT+AGG + chr8_1:83346307-83346326 None:intergenic 20.0%
!!! TATTTTGCTAATAACTTTGA+TGG - chr8_1:83346470-83346489 Msa1220290:CDS 20.0%
!! TGAATTTGATTAATGGTTTA+TGG - chr8_1:83346965-83346984 Msa1220290:CDS 20.0%
!!! TAAATGATGATCTGAAATTA+AGG - chr8_1:83347031-83347050 Msa1220290:CDS 20.0%
!! GAAAGAAAAAAAAAATCTCA+AGG - chr8_1:83347244-83347263 Msa1220290:five_prime_UTR 20.0%
!! TAATCCTCTTTATATATTAG+TGG - chr8_1:83345308-83345327 Msa1220290:three_prime_UTR 20.0%
!! ATAGACACATAAAATAATCA+AGG + chr8_1:83345435-83345454 None:intergenic 20.0%
!! CATCATCAAATTAATTAAAG+GGG + chr8_1:83345765-83345784 None:intergenic 20.0%
!! CACATCATCAAATTAATTAA+AGG + chr8_1:83345767-83345786 None:intergenic 20.0%
!! GCAATAATTATTCAACTATT+AGG - chr8_1:83346114-83346133 Msa1220290:intron 20.0%
!! GTTGAATTGAATCTTTAATT+TGG + chr8_1:83346284-83346303 None:intergenic 20.0%
!!! AATACAAAGTGATTGTTTTA+GGG + chr8_1:83346306-83346325 None:intergenic 20.0%
!!! TAATACAAAGTGATTGTTTT+AGG + chr8_1:83346307-83346326 None:intergenic 20.0%
!!! TATTTTGCTAATAACTTTGA+TGG - chr8_1:83346470-83346489 Msa1220290:CDS 20.0%
!! TGAATTTGATTAATGGTTTA+TGG - chr8_1:83346965-83346984 Msa1220290:CDS 20.0%
!!! TAAATGATGATCTGAAATTA+AGG - chr8_1:83347031-83347050 Msa1220290:CDS 20.0%
!! GAAAGAAAAAAAAAATCTCA+AGG - chr8_1:83347244-83347263 Msa1220290:five_prime_UTR 20.0%
! ATATAAAGAGGATTAAGAGA+GGG + chr8_1:83345303-83345322 None:intergenic 25.0%
! TATATAAAGAGGATTAAGAG+AGG + chr8_1:83345304-83345323 None:intergenic 25.0%
! TTGTCCACTAATATATAAAG+AGG + chr8_1:83345315-83345334 None:intergenic 25.0%
! TATATGCAACTGAAATGAAA+CGG + chr8_1:83345358-83345377 None:intergenic 25.0%
! TGATCTTGATTAAGATCAAA+GGG + chr8_1:83345510-83345529 None:intergenic 25.0%
! TTGATCTTGATTAAGATCAA+AGG + chr8_1:83345511-83345530 None:intergenic 25.0%
! GAAAATGAAGAAGAAGAATT+TGG + chr8_1:83345552-83345571 None:intergenic 25.0%
!!! TTTGTTTTGCAGTAATAAGA+TGG + chr8_1:83345630-83345649 None:intergenic 25.0%
! AATTAATTAAAGGGGATCAA+AGG + chr8_1:83345757-83345776 None:intergenic 25.0%
!!! TTGATGATGTGATCTTAATT+AGG - chr8_1:83345776-83345795 Msa1220290:CDS 25.0%
! GATCATATATGTATACCTTT+GGG + chr8_1:83346196-83346215 None:intergenic 25.0%
!! TTGATTTTGAATATAAAGGG+TGG + chr8_1:83346224-83346243 None:intergenic 25.0%
!!! GAATTGAATCTTTAATTTGG+AGG + chr8_1:83346281-83346300 None:intergenic 25.0%
!!! TTATAGTATTAGTGCTACTT+AGG - chr8_1:83346413-83346432 Msa1220290:CDS 25.0%
!! TGAACAATCAAACTCAATTT+TGG + chr8_1:83346654-83346673 None:intergenic 25.0%
! ATTTAAGAATATCGTTCACT+AGG - chr8_1:83346884-83346903 Msa1220290:CDS 25.0%
! ATTTCAGATCATCATTTATC+TGG + chr8_1:83347029-83347048 None:intergenic 25.0%
! TAAGAAATAGATGAACAAGA+TGG + chr8_1:83347218-83347237 None:intergenic 25.0%
! ATATAAAGAGGATTAAGAGA+GGG + chr8_1:83345303-83345322 None:intergenic 25.0%
! TATATAAAGAGGATTAAGAG+AGG + chr8_1:83345304-83345323 None:intergenic 25.0%
! TTGTCCACTAATATATAAAG+AGG + chr8_1:83345315-83345334 None:intergenic 25.0%
! TATATGCAACTGAAATGAAA+CGG + chr8_1:83345358-83345377 None:intergenic 25.0%
! TGATCTTGATTAAGATCAAA+GGG + chr8_1:83345510-83345529 None:intergenic 25.0%
! TTGATCTTGATTAAGATCAA+AGG + chr8_1:83345511-83345530 None:intergenic 25.0%
! GAAAATGAAGAAGAAGAATT+TGG + chr8_1:83345552-83345571 None:intergenic 25.0%
!!! TTTGTTTTGCAGTAATAAGA+TGG + chr8_1:83345630-83345649 None:intergenic 25.0%
! AATTAATTAAAGGGGATCAA+AGG + chr8_1:83345757-83345776 None:intergenic 25.0%
!!! TTGATGATGTGATCTTAATT+AGG - chr8_1:83345776-83345795 Msa1220290:CDS 25.0%
! GATCATATATGTATACCTTT+GGG + chr8_1:83346196-83346215 None:intergenic 25.0%
!! TTGATTTTGAATATAAAGGG+TGG + chr8_1:83346224-83346243 None:intergenic 25.0%
!!! GAATTGAATCTTTAATTTGG+AGG + chr8_1:83346281-83346300 None:intergenic 25.0%
!!! TTATAGTATTAGTGCTACTT+AGG - chr8_1:83346413-83346432 Msa1220290:CDS 25.0%
!! TGAACAATCAAACTCAATTT+TGG + chr8_1:83346654-83346673 None:intergenic 25.0%
! ATTTAAGAATATCGTTCACT+AGG - chr8_1:83346884-83346903 Msa1220290:CDS 25.0%
! ATTTCAGATCATCATTTATC+TGG + chr8_1:83347029-83347048 None:intergenic 25.0%
! TAAGAAATAGATGAACAAGA+TGG + chr8_1:83347218-83347237 None:intergenic 25.0%
! AAGAAGAATTTGGACTAGAA+AGG + chr8_1:83345542-83345561 None:intergenic 30.0%
!! TGATCTTAATTAGGTTGAGA+AGG - chr8_1:83345785-83345804 Msa1220290:CDS 30.0%
!!! GTTTAGTCTTGTAGTTTTCA+TGG + chr8_1:83345857-83345876 None:intergenic 30.0%
GAGAATAATGAAGAAGATGA+TGG - chr8_1:83345986-83346005 Msa1220290:CDS 30.0%
GGATCATATATGTATACCTT+TGG + chr8_1:83346197-83346216 None:intergenic 30.0%
TTATAATCACGAATCACACT+CGG - chr8_1:83346332-83346351 Msa1220290:CDS 30.0%
!! AAAGGAGTTTATCACTTTTG+AGG - chr8_1:83346730-83346749 Msa1220290:intron 30.0%
ATTAAGCTTGAGTGAGAATT+TGG - chr8_1:83346760-83346779 Msa1220290:intron 30.0%
TTAAGCTTGAGTGAGAATTT+GGG - chr8_1:83346761-83346780 Msa1220290:intron 30.0%
!! TTATCTTATGGATTAGTCCA+TGG - chr8_1:83346839-83346858 Msa1220290:intron 30.0%
ATAAGGTGCAATAAAGTTAG+TGG - chr8_1:83346997-83347016 Msa1220290:CDS 30.0%
TAAGGTGCAATAAAGTTAGT+GGG - chr8_1:83346998-83347017 Msa1220290:CDS 30.0%
! ATGATCTGAAATTAAGGTGA+AGG - chr8_1:83347037-83347056 Msa1220290:CDS 30.0%
ATTAAGGTGAAGGACAAAAA+AGG - chr8_1:83347047-83347066 Msa1220290:exon 30.0%
! AAGAAGAATTTGGACTAGAA+AGG + chr8_1:83345542-83345561 None:intergenic 30.0%
!! TGATCTTAATTAGGTTGAGA+AGG - chr8_1:83345785-83345804 Msa1220290:CDS 30.0%
!!! GTTTAGTCTTGTAGTTTTCA+TGG + chr8_1:83345857-83345876 None:intergenic 30.0%
GAGAATAATGAAGAAGATGA+TGG - chr8_1:83345986-83346005 Msa1220290:CDS 30.0%
GGATCATATATGTATACCTT+TGG + chr8_1:83346197-83346216 None:intergenic 30.0%
TTATAATCACGAATCACACT+CGG - chr8_1:83346332-83346351 Msa1220290:CDS 30.0%
!! AAAGGAGTTTATCACTTTTG+AGG - chr8_1:83346730-83346749 Msa1220290:intron 30.0%
ATTAAGCTTGAGTGAGAATT+TGG - chr8_1:83346760-83346779 Msa1220290:intron 30.0%
TTAAGCTTGAGTGAGAATTT+GGG - chr8_1:83346761-83346780 Msa1220290:intron 30.0%
!! TTATCTTATGGATTAGTCCA+TGG - chr8_1:83346839-83346858 Msa1220290:intron 30.0%
ATAAGGTGCAATAAAGTTAG+TGG - chr8_1:83346997-83347016 Msa1220290:CDS 30.0%
TAAGGTGCAATAAAGTTAGT+GGG - chr8_1:83346998-83347017 Msa1220290:CDS 30.0%
! ATGATCTGAAATTAAGGTGA+AGG - chr8_1:83347037-83347056 Msa1220290:CDS 30.0%
ATTAAGGTGAAGGACAAAAA+AGG - chr8_1:83347047-83347066 Msa1220290:exon 30.0%
GGATCATCACAAGATATATG+TGG + chr8_1:83345272-83345291 None:intergenic 35.0%
! ATAAGGTGGTGGTATCATAT+TGG + chr8_1:83345469-83345488 None:intergenic 35.0%
ATTAAGATCAAAGGGCTTGA+CGG + chr8_1:83345502-83345521 None:intergenic 35.0%
! AATTTGGACTAGAAAGGTCA+TGG + chr8_1:83345536-83345555 None:intergenic 35.0%
TTGATCTTGTGAGTCTAAGA+GGG + chr8_1:83345598-83345617 None:intergenic 35.0%
TACTTTACCTCTTGATCATG+TGG + chr8_1:83345660-83345679 None:intergenic 35.0%
TAATTAAAGGGGATCAAAGG+TGG + chr8_1:83345754-83345773 None:intergenic 35.0%
AAGGTTAATATTCCCTCAAG+TGG - chr8_1:83345804-83345823 Msa1220290:CDS 35.0%
TAATCAAGAAGCTGATCATG+AGG - chr8_1:83345929-83345948 Msa1220290:CDS 35.0%
! GATGATGGTTTCTGATCAAA+CGG - chr8_1:83346001-83346020 Msa1220290:CDS 35.0%
ATGATGGTTTCTGATCAAAC+GGG - chr8_1:83346002-83346021 Msa1220290:CDS 35.0%
TTGAATATAAAGGGTGGAAG+TGG + chr8_1:83346218-83346237 None:intergenic 35.0%
!! ATTAGTGCTACTTAGGTAAG+TGG - chr8_1:83346420-83346439 Msa1220290:CDS 35.0%
ACCATCTCATCAAAGTAGAA+AGG - chr8_1:83346712-83346731 Msa1220290:CDS 35.0%
TCCTTTCTACTTTGATGAGA+TGG + chr8_1:83346716-83346735 None:intergenic 35.0%
GTTTATGGTGTACGAGAATA+AGG - chr8_1:83346980-83346999 Msa1220290:CDS 35.0%
AAAATCACACTACCTTCATC+TGG + chr8_1:83347096-83347115 None:intergenic 35.0%
GGATCATCACAAGATATATG+TGG + chr8_1:83345272-83345291 None:intergenic 35.0%
! ATAAGGTGGTGGTATCATAT+TGG + chr8_1:83345469-83345488 None:intergenic 35.0%
ATTAAGATCAAAGGGCTTGA+CGG + chr8_1:83345502-83345521 None:intergenic 35.0%
! AATTTGGACTAGAAAGGTCA+TGG + chr8_1:83345536-83345555 None:intergenic 35.0%
TTGATCTTGTGAGTCTAAGA+GGG + chr8_1:83345598-83345617 None:intergenic 35.0%
TACTTTACCTCTTGATCATG+TGG + chr8_1:83345660-83345679 None:intergenic 35.0%
TAATTAAAGGGGATCAAAGG+TGG + chr8_1:83345754-83345773 None:intergenic 35.0%
AAGGTTAATATTCCCTCAAG+TGG - chr8_1:83345804-83345823 Msa1220290:CDS 35.0%
TAATCAAGAAGCTGATCATG+AGG - chr8_1:83345929-83345948 Msa1220290:CDS 35.0%
! GATGATGGTTTCTGATCAAA+CGG - chr8_1:83346001-83346020 Msa1220290:CDS 35.0%
ATGATGGTTTCTGATCAAAC+GGG - chr8_1:83346002-83346021 Msa1220290:CDS 35.0%
TTGAATATAAAGGGTGGAAG+TGG + chr8_1:83346218-83346237 None:intergenic 35.0%
!! ATTAGTGCTACTTAGGTAAG+TGG - chr8_1:83346420-83346439 Msa1220290:CDS 35.0%
ACCATCTCATCAAAGTAGAA+AGG - chr8_1:83346712-83346731 Msa1220290:CDS 35.0%
TCCTTTCTACTTTGATGAGA+TGG + chr8_1:83346716-83346735 None:intergenic 35.0%
GTTTATGGTGTACGAGAATA+AGG - chr8_1:83346980-83346999 Msa1220290:CDS 35.0%
AAAATCACACTACCTTCATC+TGG + chr8_1:83347096-83347115 None:intergenic 35.0%
GATTAAGAGAGGGAGAGAAT+GGG + chr8_1:83345293-83345312 None:intergenic 40.0%
TGAATCAGTGCAAGCAAAGT+AGG + chr8_1:83345385-83345404 None:intergenic 40.0%
TCAAGGCTGAGAGAATTGAA+GGG + chr8_1:83345418-83345437 None:intergenic 40.0%
ATCAAGGCTGAGAGAATTGA+AGG + chr8_1:83345419-83345438 None:intergenic 40.0%
GGTGGTATCATATTGGATGA+TGG + chr8_1:83345462-83345481 None:intergenic 40.0%
! TTGACGGACGAAGATAGATA+AGG + chr8_1:83345486-83345505 None:intergenic 40.0%
CTTGATCTTGTGAGTCTAAG+AGG + chr8_1:83345599-83345618 None:intergenic 40.0%
CAACTTACCACATGATCAAG+AGG - chr8_1:83345650-83345669 Msa1220290:exon 40.0%
ATATTCCCTCAAGTGGATCA+TGG - chr8_1:83345811-83345830 Msa1220290:CDS 40.0%
GAATTCCATGATCCACTTGA+GGG + chr8_1:83345819-83345838 None:intergenic 40.0%
AGAATTCCATGATCCACTTG+AGG + chr8_1:83345820-83345839 None:intergenic 40.0%
AACACAAGCTGACAATTCGT+TGG - chr8_1:83345874-83345893 Msa1220290:CDS 40.0%
TGATCATGAGGATGGTACTT+CGG - chr8_1:83345941-83345960 Msa1220290:CDS 40.0%
CTGCTATTATCTGTTCCTTG+TGG + chr8_1:83346092-83346111 None:intergenic 40.0%
ATGTGGGATTAGACAAAGGA+AGG - chr8_1:83346520-83346539 Msa1220290:CDS 40.0%
! TGTTCAACAAGTTTTCCCTC+AGG - chr8_1:83346784-83346803 Msa1220290:intron 40.0%
CATAAGATAACGCCATGAGA+AGG + chr8_1:83346829-83346848 None:intergenic 40.0%
CTTCTCATGGCGTTATCTTA+TGG - chr8_1:83346827-83346846 Msa1220290:intron 40.0%
CAATGAACTAAGCTCAACCA+TGG + chr8_1:83346859-83346878 None:intergenic 40.0%
CATGGTTGAGCTTAGTTCAT+TGG - chr8_1:83346857-83346876 Msa1220290:intron 40.0%
GTATCGTTGTAACCAGATGA+AGG - chr8_1:83347081-83347100 Msa1220290:five_prime_UTR 40.0%
GATTAAGAGAGGGAGAGAAT+GGG + chr8_1:83345293-83345312 None:intergenic 40.0%
TGAATCAGTGCAAGCAAAGT+AGG + chr8_1:83345385-83345404 None:intergenic 40.0%
TCAAGGCTGAGAGAATTGAA+GGG + chr8_1:83345418-83345437 None:intergenic 40.0%
ATCAAGGCTGAGAGAATTGA+AGG + chr8_1:83345419-83345438 None:intergenic 40.0%
GGTGGTATCATATTGGATGA+TGG + chr8_1:83345462-83345481 None:intergenic 40.0%
! TTGACGGACGAAGATAGATA+AGG + chr8_1:83345486-83345505 None:intergenic 40.0%
CTTGATCTTGTGAGTCTAAG+AGG + chr8_1:83345599-83345618 None:intergenic 40.0%
CAACTTACCACATGATCAAG+AGG - chr8_1:83345650-83345669 Msa1220290:exon 40.0%
ATATTCCCTCAAGTGGATCA+TGG - chr8_1:83345811-83345830 Msa1220290:CDS 40.0%
GAATTCCATGATCCACTTGA+GGG + chr8_1:83345819-83345838 None:intergenic 40.0%
AGAATTCCATGATCCACTTG+AGG + chr8_1:83345820-83345839 None:intergenic 40.0%
AACACAAGCTGACAATTCGT+TGG - chr8_1:83345874-83345893 Msa1220290:CDS 40.0%
TGATCATGAGGATGGTACTT+CGG - chr8_1:83345941-83345960 Msa1220290:CDS 40.0%
CTGCTATTATCTGTTCCTTG+TGG + chr8_1:83346092-83346111 None:intergenic 40.0%
ATGTGGGATTAGACAAAGGA+AGG - chr8_1:83346520-83346539 Msa1220290:CDS 40.0%
! TGTTCAACAAGTTTTCCCTC+AGG - chr8_1:83346784-83346803 Msa1220290:intron 40.0%
CATAAGATAACGCCATGAGA+AGG + chr8_1:83346829-83346848 None:intergenic 40.0%
CTTCTCATGGCGTTATCTTA+TGG - chr8_1:83346827-83346846 Msa1220290:intron 40.0%
CAATGAACTAAGCTCAACCA+TGG + chr8_1:83346859-83346878 None:intergenic 40.0%
CATGGTTGAGCTTAGTTCAT+TGG - chr8_1:83346857-83346876 Msa1220290:intron 40.0%
GTATCGTTGTAACCAGATGA+AGG - chr8_1:83347081-83347100 Msa1220290:five_prime_UTR 40.0%
GGATTAAGAGAGGGAGAGAA+TGG + chr8_1:83345294-83345313 None:intergenic 45.0%
GACGAAGATAGATAAGGTGG+TGG + chr8_1:83345480-83345499 None:intergenic 45.0%
ACGGACGAAGATAGATAAGG+TGG + chr8_1:83345483-83345502 None:intergenic 45.0%
CAAGAAGCTGATCATGAGGA+TGG - chr8_1:83345933-83345952 Msa1220290:CDS 45.0%
ATGTATACCTTTGGGCCTCT+TGG + chr8_1:83346188-83346207 None:intergenic 45.0%
! AGTCACTTTGCAACGCATGT+GGG - chr8_1:83346504-83346523 Msa1220290:CDS 45.0%
ACGCATGTGGGATTAGACAA+AGG - chr8_1:83346516-83346535 Msa1220290:CDS 45.0%
GGATTAAGAGAGGGAGAGAA+TGG + chr8_1:83345294-83345313 None:intergenic 45.0%
GACGAAGATAGATAAGGTGG+TGG + chr8_1:83345480-83345499 None:intergenic 45.0%
ACGGACGAAGATAGATAAGG+TGG + chr8_1:83345483-83345502 None:intergenic 45.0%
CAAGAAGCTGATCATGAGGA+TGG - chr8_1:83345933-83345952 Msa1220290:CDS 45.0%
ATGTATACCTTTGGGCCTCT+TGG + chr8_1:83346188-83346207 None:intergenic 45.0%
! AGTCACTTTGCAACGCATGT+GGG - chr8_1:83346504-83346523 Msa1220290:CDS 45.0%
ACGCATGTGGGATTAGACAA+AGG - chr8_1:83346516-83346535 Msa1220290:CDS 45.0%
!!! TTTTTTTTTTTTAATAATAG+TGG - chr8_1:83347117-83347136 Msa1220290:five_prime_UTR 5.0%
!!! TTTTTTTTTTTAATAATAGT+GGG - chr8_1:83347118-83347137 Msa1220290:five_prime_UTR 5.0%
!!! TTTTTTTTTTTTAATAATAG+TGG - chr8_1:83347117-83347136 Msa1220290:five_prime_UTR 5.0%
!!! TTTTTTTTTTTAATAATAGT+GGG - chr8_1:83347118-83347137 Msa1220290:five_prime_UTR 5.0%
TGTGGCAACATGTCTACTCC+AGG + chr8_1:83345254-83345273 None:intergenic 50.0%
AGGATGGTACTTCGGTGAAG+TGG - chr8_1:83345949-83345968 Msa1220290:CDS 50.0%
AAGCAACCACTGTCACCACA+AGG - chr8_1:83346074-83346093 Msa1220290:intron 50.0%
TCTGTTCCTTGTGGTGACAG+TGG + chr8_1:83346083-83346102 None:intergenic 50.0%
ACACCACTAAGACCCCTCTT+TGG - chr8_1:83346153-83346172 Msa1220290:intron 50.0%
TTGGTCCACTCCTCCAAAGA+GGG + chr8_1:83346169-83346188 None:intergenic 50.0%
! CAGTCACTTTGCAACGCATG+TGG - chr8_1:83346503-83346522 Msa1220290:CDS 50.0%
AAGGAAGGCAAGACGTGCTT+TGG - chr8_1:83346535-83346554 Msa1220290:CDS 50.0%
TTTCCCTCAGGATGAGAGAG+AGG - chr8_1:83346796-83346815 Msa1220290:intron 50.0%
AGAGGCTGCAATCCTTCTCA+TGG - chr8_1:83346814-83346833 Msa1220290:intron 50.0%
TGTGGCAACATGTCTACTCC+AGG + chr8_1:83345254-83345273 None:intergenic 50.0%
AGGATGGTACTTCGGTGAAG+TGG - chr8_1:83345949-83345968 Msa1220290:CDS 50.0%
AAGCAACCACTGTCACCACA+AGG - chr8_1:83346074-83346093 Msa1220290:intron 50.0%
TCTGTTCCTTGTGGTGACAG+TGG + chr8_1:83346083-83346102 None:intergenic 50.0%
ACACCACTAAGACCCCTCTT+TGG - chr8_1:83346153-83346172 Msa1220290:intron 50.0%
TTGGTCCACTCCTCCAAAGA+GGG + chr8_1:83346169-83346188 None:intergenic 50.0%
! CAGTCACTTTGCAACGCATG+TGG - chr8_1:83346503-83346522 Msa1220290:CDS 50.0%
AAGGAAGGCAAGACGTGCTT+TGG - chr8_1:83346535-83346554 Msa1220290:CDS 50.0%
TTTCCCTCAGGATGAGAGAG+AGG - chr8_1:83346796-83346815 Msa1220290:intron 50.0%
AGAGGCTGCAATCCTTCTCA+TGG - chr8_1:83346814-83346833 Msa1220290:intron 50.0%
CCTCCAAAGAGGGGTCTTAG+TGG + chr8_1:83346159-83346178 None:intergenic 55.0%
CCACTAAGACCCCTCTTTGG+AGG - chr8_1:83346156-83346175 Msa1220290:intron 55.0%
! AAGACCCCTCTTTGGAGGAG+TGG - chr8_1:83346161-83346180 Msa1220290:intron 55.0%
TGGTCCACTCCTCCAAAGAG+GGG + chr8_1:83346168-83346187 None:intergenic 55.0%
CTTGGTCCACTCCTCCAAAG+AGG + chr8_1:83346170-83346189 None:intergenic 55.0%
! CTTTGGAGGAGTGGACCAAG+AGG - chr8_1:83346170-83346189 Msa1220290:intron 55.0%
TTTGGCTGCTGCTGCAGCAT+CGG - chr8_1:83346553-83346572 Msa1220290:CDS 55.0%
CAGCCTCTCTCTCATCCTGA+GGG + chr8_1:83346802-83346821 None:intergenic 55.0%
CCTCCAAAGAGGGGTCTTAG+TGG + chr8_1:83346159-83346178 None:intergenic 55.0%
CCACTAAGACCCCTCTTTGG+AGG - chr8_1:83346156-83346175 Msa1220290:intron 55.0%
! AAGACCCCTCTTTGGAGGAG+TGG - chr8_1:83346161-83346180 Msa1220290:intron 55.0%
TGGTCCACTCCTCCAAAGAG+GGG + chr8_1:83346168-83346187 None:intergenic 55.0%
CTTGGTCCACTCCTCCAAAG+AGG + chr8_1:83346170-83346189 None:intergenic 55.0%
! CTTTGGAGGAGTGGACCAAG+AGG - chr8_1:83346170-83346189 Msa1220290:intron 55.0%
TTTGGCTGCTGCTGCAGCAT+CGG - chr8_1:83346553-83346572 Msa1220290:CDS 55.0%
CAGCCTCTCTCTCATCCTGA+GGG + chr8_1:83346802-83346821 None:intergenic 55.0%
GAGTGGACCAAGAGGCCCAA+AGG - chr8_1:83346178-83346197 Msa1220290:intron 60.0%
!! GCTGCTGCAGCATCGGCAAA+TGG - chr8_1:83346560-83346579 Msa1220290:CDS 60.0%
GCAGCCTCTCTCTCATCCTG+AGG + chr8_1:83346803-83346822 None:intergenic 60.0%
GAGTGGACCAAGAGGCCCAA+AGG - chr8_1:83346178-83346197 Msa1220290:intron 60.0%
!! GCTGCTGCAGCATCGGCAAA+TGG - chr8_1:83346560-83346579 Msa1220290:CDS 60.0%
GCAGCCTCTCTCTCATCCTG+AGG + chr8_1:83346803-83346822 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 83345244 83347287 83345244 ID=Msa1220290;Name=Msa1220290
chr8_1 mRNA 83345244 83347287 83345244 ID=Msa1220290-mRNA-1;Parent=Msa1220290;Name=Msa1220290-mRNA-1;_AED=0.04;_eAED=0.04;_QI=227|1|1|1|1|1|3|422|320
chr8_1 exon 83345244 83346025 83345244 ID=Msa1220290-mRNA-1:exon:29896;Parent=Msa1220290-mRNA-1
chr8_1 exon 83346332 83346733 83346332 ID=Msa1220290-mRNA-1:exon:29895;Parent=Msa1220290-mRNA-1
chr8_1 exon 83346860 83347287 83346860 ID=Msa1220290-mRNA-1:exon:29894;Parent=Msa1220290-mRNA-1
chr8_1 five_prime_UTR 83347061 83347287 83347061 ID=Msa1220290-mRNA-1:five_prime_utr;Parent=Msa1220290-mRNA-1
chr8_1 CDS 83346860 83347060 83346860 ID=Msa1220290-mRNA-1:cds;Parent=Msa1220290-mRNA-1
chr8_1 CDS 83346332 83346733 83346332 ID=Msa1220290-mRNA-1:cds;Parent=Msa1220290-mRNA-1
chr8_1 CDS 83345666 83346025 83345666 ID=Msa1220290-mRNA-1:cds;Parent=Msa1220290-mRNA-1
chr8_1 three_prime_UTR 83345244 83345665 83345244 ID=Msa1220290-mRNA-1:three_prime_utr;Parent=Msa1220290-mRNA-1
Gene Sequence

>Msa1220290

ATGATACCACCACCTTATCTATCTTCGTCCGTCAAGCCCTTTGATCTTAATCAAGATCAAAACCATGACCTTTCTAGTCCAAATTCTTCTTCTTCATTTTCTTCTCTATCAGCATCATATTCTACCCTCTTAGACTCACAAGATCAAGTTCAACAACCATCTTATTACTGCAAAACAAACAACTTACCACATGATCAAGAGGTTGAGAAGGTTAATATTCCCTCAAGTGGATCATGGAATTCTTCAACTGCAGAAAACCATGAAAACTACAAGACTAAACACAAGCTGACAATTCGTTGGAAGAAAGAACAAATCAGTGATGAAATGAATAATAATCAAGAAGCTGATCATGAGGATGGTACTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATAATGAAGAAGATGATGGTTTCTGATCAAACGGGTAGTTCTAACTTAACAAGCAACTCTAAGCAGATTAAGTTTGAAGATCAAAAGCAACCACTGTCACCACAAGGAACAGATAATAGCAGCAGCAATAATTATTCAACTATTAGGGTTTGCTCTGATTGCAACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCAAAGTCACTTTGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCTTTGGCTGCTGCTGCAGCATCGGCAAATGGTACAACAATTGCTGATCAGACAGCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAATCCAAAATTGAGTTTGATTGTTCAACAGTGCATATGAAAAAGAAGCACATACTTGAAGCAAAACCATCTCATCAAAGTAGAAAGGAGTTTATCACTTTTGAGGATTTGAAATTAAGCTTGAGTGAGAATTTGGGTGTTCAACAAGTTTTCCCTCAGGATGAGAGAGAGGCTGCAATCCTTCTCATGGCGTTATCTTATGGATTAGTCCATGGTTGA

Protein sequence

>Msa1220290

MIPPPYLSSSVKPFDLNQDQNHDLSSPNSSSSFSSLSASYSTLLDSQDQVQQPSYYCKTNNLPHDQEVEKVNIPSSGSWNSSTAENHENYKTKHKLTIRWKKEQISDEMNNNQEADHEDGTSVKWMSSKMRIMKKMMVSDQTGSSNLTSNSKQIKFEDQKQPLSPQGTDNSSSNNYSTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAASANGTTIADQTASVKRKKLQKKKENKSKIEFDCSTVHMKKKHILEAKPSHQSRKEFITFEDLKLSLSENLGVQQVFPQDEREAAILLMALSYGLVHG*