AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303470 MtrunA17_Chr4g0071301 92.332 313 18 3 38 345 22 333 3.02e-179 499
Msa1303470 MtrunA17_Chr2g0299081 46.645 313 123 13 39 345 22 296 4.61e-46 159
Msa1303470 MtrunA17_Chr1g0151461 44.667 150 58 6 147 274 108 254 5.13e-26 105
Msa1303470 MtrunA17_Chr4g0068031 35.135 148 70 5 197 344 22 143 2.76e-17 77.8
Msa1303470 MtrunA17_Chr7g0271861 75.000 36 9 0 205 240 22 57 1.49e-14 69.7
Msa1303470 MtrunA17_Chr5g0404131 53.448 58 27 0 184 241 171 228 3.57e-14 72.4
Msa1303470 MtrunA17_Chr8g0373231 70.270 37 11 0 205 241 125 161 1.21e-12 67.0
Msa1303470 MtrunA17_Chr1g0213161 39.506 81 42 2 199 274 146 224 6.60e-12 64.7
Msa1303470 MtrunA17_Chr2g0326771 46.377 69 36 1 173 240 183 251 4.66e-11 63.2
Msa1303470 MtrunA17_Chr5g0404981 40.244 82 44 2 205 283 300 379 4.81e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303470 AT4G26150.1 41.700 247 118 6 116 345 115 352 2.64e-38 140
Msa1303470 AT5G56860.1 44.444 153 54 5 116 238 112 263 3.20e-24 102
Msa1303470 AT5G49300.1 36.424 151 57 4 194 344 27 138 5.66e-18 79.7
Msa1303470 AT5G26930.1 75.610 41 10 0 202 242 23 63 3.45e-17 77.0
Msa1303470 AT3G06740.1 37.778 135 51 5 207 341 43 144 1.33e-15 73.6
Msa1303470 AT4G36620.1 50.769 65 25 1 205 262 75 139 6.96e-15 73.2
Msa1303470 AT3G50870.1 63.265 49 17 1 205 252 152 200 3.81e-14 72.4
Msa1303470 AT3G16870.1 70.000 40 12 0 203 242 40 79 7.35e-14 69.7
Msa1303470 AT4G16141.1 67.500 40 13 0 203 242 35 74 1.44e-13 68.9
Msa1303470 AT2G18380.1 66.667 45 14 1 201 244 88 132 1.68e-13 69.3
Msa1303470 AT1G08010.2 39.773 88 50 2 197 284 212 296 6.14e-13 68.9
Msa1303470 AT1G08010.1 39.773 88 50 2 197 284 212 296 6.14e-13 68.9
Msa1303470 AT1G08010.3 39.773 88 50 2 197 284 212 296 6.14e-13 68.9
Msa1303470 AT1G08000.2 38.636 88 50 2 197 284 210 293 3.63e-12 66.6
Msa1303470 AT1G08000.1 38.636 88 50 2 197 284 210 293 3.63e-12 66.6

Find 75 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTTCATTGGTTCAATTTA+AGG 0.134485 8_3:+66634437 Msa1303470:three_prime_UTR
GCAATAATTATTCAACTATT+AGG 0.137638 8_3:+66633678 Msa1303470:CDS
TGAACAATCAAACTCAATTT+TGG 0.139942 8_3:-66634219 None:intergenic
ATTAAGCTTGAGTGAGAATT+TGG 0.175716 8_3:+66634328 Msa1303470:CDS
CTTCTCATGGCGTTATCTTA+TGG 0.189112 8_3:+66634395 Msa1303470:CDS
TGAATTTGATTAATGGTTTA+TGG 0.211015 8_3:+66634537 Msa1303470:three_prime_UTR
ATTAGTTTGAATTTGATTAA+TGG 0.224358 8_3:+66634530 Msa1303470:three_prime_UTR
GAAAATGAAGAAGAAGAATT+TGG 0.264622 8_3:-66633113 None:intergenic
TCTATCTATCTATCTTAATT+AGG 0.276848 8_3:+66634501 Msa1303470:three_prime_UTR
GTTTATGGTGTACGAGAATA+AGG 0.285758 8_3:+66634552 Msa1303470:three_prime_UTR
GCTGCTGCAGCATCGGCAAT+TGG 0.307111 8_3:+66634128 Msa1303470:CDS
CAATAATTATTCAACTATTA+GGG 0.315780 8_3:+66633679 Msa1303470:CDS
GAAATGATGATTGGAAATTA+AGG 0.328216 8_3:+66634593 Msa1303470:three_prime_UTR
CATGGTTGAGCTTAGTTCAT+TGG 0.347796 8_3:+66634425 Msa1303470:exon
TTGCAGCCTCTCTCTCATCC+TGG 0.357986 8_3:-66634370 None:intergenic
GTTAGTTATGAAATGATGAT+TGG 0.359941 8_3:+66634584 Msa1303470:three_prime_UTR
TGCAGCCTCTCTCTCATCCT+GGG 0.415909 8_3:-66634369 None:intergenic
ATGTATACCTTTGGGCCTCT+TGG 0.416802 8_3:-66633749 None:intergenic
CATGTGGTAAGTTGTTTGTT+TGG 0.417311 8_3:-66633205 None:intergenic
TTAAGCTTGAGTGAGAATTT+GGG 0.418107 8_3:+66634329 Msa1303470:CDS
AAGGAAGGCAAGACGTGCTT+TGG 0.419438 8_3:+66634103 Msa1303470:CDS
ACACCACTAAGACCCCTCTA+TGG 0.423028 8_3:+66633717 Msa1303470:CDS
CTTGATCTTGTGAGTCTAAG+AGG 0.434136 8_3:-66633160 None:intergenic
CCTCCATAGAGGGGTCTTAG+TGG 0.441426 8_3:-66633720 None:intergenic
ATAAGGTGGTGGTATCATAT+TGG 0.451686 8_3:-66633031 None:intergenic
GATGATGGTTTCTGATCAAA+CGG 0.456924 8_3:+66633565 Msa1303470:CDS
TTGGTCCACTCCTCCATAGA+GGG 0.468086 8_3:-66633730 None:intergenic
AAAATCACACTACCTTCATC+TGG 0.475551 8_3:-66634655 None:intergenic
TTTGTTTGGCAGTAATAAGA+TGG 0.481929 8_3:-66633191 None:intergenic
AAGAAGAATTTGGACTAGAA+AGG 0.497380 8_3:-66633103 None:intergenic
ATTTAAGGATATTGTTCACT+AGG 0.497726 8_3:+66634452 Msa1303470:three_prime_UTR
TTATCTTATGGATTAGTCCA+TGG 0.502722 8_3:+66634407 Msa1303470:CDS
AAGATTTGAATTATGAGAAG+AGG 0.507577 8_3:-66631609 None:intergenic
ATATTCACTCAAGTGGATCA+TGG 0.512325 8_3:+66633375 Msa1303470:CDS
GAGAATAATGAAGAAGATGA+TGG 0.517661 8_3:+66633550 Msa1303470:CDS
TTTGGCTGCTGCTGCAGCAT+CGG 0.517772 8_3:+66634121 Msa1303470:CDS
CTTGGTCCACTCCTCCATAG+AGG 0.517925 8_3:-66633731 None:intergenic
TGATCTTAATTAGGTTGAGA+AGG 0.524769 8_3:+66633349 Msa1303470:intron
TTGATCTTGATTAAGATCAA+AGG 0.537551 8_3:-66633072 None:intergenic
TACTTTACCTCTTGATCATG+TGG 0.541831 8_3:-66633221 None:intergenic
AACACAAGCTGACAATTCGT+TGG 0.542076 8_3:+66633438 Msa1303470:CDS
AAGGTTAATATTCACTCAAG+TGG 0.542101 8_3:+66633368 Msa1303470:CDS
ATGATTGGAAATTAAGGTGA+AGG 0.542569 8_3:+66634599 Msa1303470:three_prime_UTR
GGTGGTATCATATTGGATGA+TGG 0.543870 8_3:-66633024 None:intergenic
CAGTCACTTTGCAACGCATG+TGG 0.556816 8_3:+66634071 Msa1303470:intron
AATTTGGACTAGAAAGGTCA+TGG 0.556899 8_3:-66633097 None:intergenic
CAACTTACCACATGATCAAG+AGG 0.559110 8_3:+66633214 Msa1303470:CDS
GCAGCCTCTCTCTCATCCTG+GGG 0.567150 8_3:-66634368 None:intergenic
AGAGGCTGCAATCCTTCTCA+TGG 0.574547 8_3:+66634382 Msa1303470:CDS
ATGATGGTTTCTGATCAAAC+GGG 0.587005 8_3:+66633566 Msa1303470:CDS
TAAGAAATAGATGAACGAGA+TGG 0.587918 8_3:-66634777 None:intergenic
GCATCGTTGTAACCAGATGA+AGG 0.588439 8_3:+66634643 Msa1303470:three_prime_UTR
ATGTGGGATTAGACAAAGGA+AGG 0.591436 8_3:+66634088 Msa1303470:CDS
CTGCTATTATCTGTTCCTTG+TGG 0.602551 8_3:-66633653 None:intergenic
TGATCATGAGGATGGTACTT+CGG 0.612710 8_3:+66633505 Msa1303470:CDS
CAAGAAGCTGATCATGAGGA+TGG 0.614482 8_3:+66633497 Msa1303470:CDS
AGGATGGTACTTCGGTGAAG+TGG 0.614786 8_3:+66633513 Msa1303470:CDS
TTGATCTTGTGAGTCTAAGA+GGG 0.615407 8_3:-66633159 None:intergenic
CATAAGATAACGCCATGAGA+AGG 0.615895 8_3:-66634394 None:intergenic
TAATCAAGAAGCTGATCATG+AGG 0.617008 8_3:+66633493 Msa1303470:CDS
GAGTGGACCAAGAGGCCCAA+AGG 0.618470 8_3:+66633742 Msa1303470:CDS
CAATGAACTAAGCTCAACCA+TGG 0.619076 8_3:-66634424 None:intergenic
TCTGTTCCTTGTGGTGACAG+TGG 0.621928 8_3:-66633644 None:intergenic
ATGACGGACGAAGATAGATA+AGG 0.632473 8_3:-66633048 None:intergenic
TGGTCCACTCCTCCATAGAG+GGG 0.635988 8_3:-66633729 None:intergenic
AAGACCCCTCTATGGAGGAG+TGG 0.638844 8_3:+66633725 Msa1303470:CDS
GACGAAGATAGATAAGGTGG+TGG 0.639273 8_3:-66633042 None:intergenic
GATTAAGATCAAAGGCATGA+CGG 0.640879 8_3:-66633064 None:intergenic
CCACTAAGACCCCTCTATGG+AGG 0.641407 8_3:+66633720 Msa1303470:CDS
AGTCACTTTGCAACGCATGT+GGG 0.651862 8_3:+66634072 Msa1303470:intron
AAGCAACCACTGTCACCACA+AGG 0.654177 8_3:+66633638 Msa1303470:CDS
ACGGACGAAGATAGATAAGG+TGG 0.673417 8_3:-66633045 None:intergenic
ACGCATGTGGGATTAGACAA+AGG 0.678808 8_3:+66634084 Msa1303470:CDS
CAGCCTCTCTCTCATCCTGG+GGG 0.685188 8_3:-66634367 None:intergenic
CTATGGAGGAGTGGACCAAG+AGG 0.688009 8_3:+66633734 Msa1303470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCTAAGAAATTTTTATT+TGG - chr8_3:66632134-66632153 None:intergenic 10.0%
!! GTAAAAATAATATAAATGTA+GGG - chr8_3:66632524-66632543 None:intergenic 10.0%
!! AGTAAAAATAATATAAATGT+AGG - chr8_3:66632525-66632544 None:intergenic 10.0%
!! AAATAAAAAAAATTGACAAA+AGG + chr8_3:66632730-66632749 Msa1303470:intron 10.0%
!!! TTTTAAAAATTAATAATGAC+AGG + chr8_3:66632753-66632772 Msa1303470:intron 10.0%
!! AAATCAAATTAATAAAGTAT+AGG + chr8_3:66633800-66633819 Msa1303470:intron 10.0%
!!! ATATGAAAAATCTTTAGTTT+TGG + chr8_3:66632068-66632087 Msa1303470:intron 15.0%
!!! AGAAATTTTTATTTGGTTTT+TGG - chr8_3:66632127-66632146 None:intergenic 15.0%
!!! AAGTCTAAATTGATAATTTT+AGG + chr8_3:66632324-66632343 Msa1303470:intron 15.0%
!!! GGACAAATTTTTTTTTTTAA+GGG - chr8_3:66632609-66632628 None:intergenic 15.0%
!! ACATCATCAAATTAATTAAA+GGG - chr8_3:66633330-66633349 None:intergenic 15.0%
!! CAATAATTATTCAACTATTA+GGG + chr8_3:66633679-66633698 Msa1303470:CDS 15.0%
!! AAATTAATAAAGTATAGGTT+TGG + chr8_3:66633805-66633824 Msa1303470:intron 15.0%
!! AAAATGTTTATTTATTTGTC+AGG + chr8_3:66633940-66633959 Msa1303470:intron 15.0%
!!! ATTAGTTTGAATTTGATTAA+TGG + chr8_3:66634530-66634549 Msa1303470:three_prime_UTR 15.0%
!!! TTATTTTCTTTTATAATAGG+TGG + chr8_3:66634679-66634698 Msa1303470:three_prime_UTR 15.0%
!!! TATTTTCTTTTATAATAGGT+GGG + chr8_3:66634680-66634699 Msa1303470:three_prime_UTR 15.0%
!! TATTTGAAAAAAAAATCTCA+AGG + chr8_3:66634801-66634820 Msa1303470:three_prime_UTR 15.0%
!!! CAAAGTATTAAAAAAATGCT+AGG + chr8_3:66631897-66631916 Msa1303470:intron 20.0%
!!! ATTACTCTTATAATTTTGAG+TGG + chr8_3:66632021-66632040 Msa1303470:intron 20.0%
!!! TTTTGGTAAAACTTTTGATA+TGG - chr8_3:66632110-66632129 None:intergenic 20.0%
!! TTAATATTTACTCATTTGCT+TGG + chr8_3:66632151-66632170 Msa1303470:intron 20.0%
!! ACTTTCACTATAATAAAAAG+AGG + chr8_3:66632569-66632588 Msa1303470:intron 20.0%
!!! GGGACAAATTTTTTTTTTTA+AGG - chr8_3:66632610-66632629 None:intergenic 20.0%
!! CAATAATTTAAGAACTTCTA+GGG + chr8_3:66632695-66632714 Msa1303470:intron 20.0%
!! TAATCCTCTTTATATATTAG+TGG + chr8_3:66632874-66632893 Msa1303470:intron 20.0%
!! TATAGACACAAAAATAATCA+AGG - chr8_3:66633001-66633020 None:intergenic 20.0%
!! CATCATCAAATTAATTAAAG+GGG - chr8_3:66633329-66633348 None:intergenic 20.0%
!! CACATCATCAAATTAATTAA+AGG - chr8_3:66633331-66633350 None:intergenic 20.0%
!! GCAATAATTATTCAACTATT+AGG + chr8_3:66633678-66633697 Msa1303470:CDS 20.0%
!! TCATATATATGTATACCTTT+GGG - chr8_3:66633760-66633779 None:intergenic 20.0%
!! ATCATATATATGTATACCTT+TGG - chr8_3:66633761-66633780 None:intergenic 20.0%
!!! ATTTGATTTTTTATAAAGGG+TGG - chr8_3:66633789-66633808 None:intergenic 20.0%
!! GTTGAATTGAATCTTTAATT+TGG - chr8_3:66633847-66633866 None:intergenic 20.0%
!!! AATACAAAGTGATTGTTTTA+GGG - chr8_3:66633869-66633888 None:intergenic 20.0%
!!! TAATACAAAGTGATTGTTTT+AGG - chr8_3:66633870-66633889 None:intergenic 20.0%
!! TTATAATTACGAATCAAACT+CGG + chr8_3:66633895-66633914 Msa1303470:intron 20.0%
!!! TTTAGAACGTTGTAAATTTA+GGG - chr8_3:66633923-66633942 None:intergenic 20.0%
!!! TTTTAGAACGTTGTAAATTT+AGG - chr8_3:66633924-66633943 None:intergenic 20.0%
!!! TATTTTGCTAATAACTTTGA+TGG + chr8_3:66634038-66634057 Msa1303470:intron 20.0%
!! TCTATCTATCTATCTTAATT+AGG + chr8_3:66634501-66634520 Msa1303470:three_prime_UTR 20.0%
!! TGAATTTGATTAATGGTTTA+TGG + chr8_3:66634537-66634556 Msa1303470:three_prime_UTR 20.0%
! AAGATTTGAATTATGAGAAG+AGG - chr8_3:66631612-66631631 None:intergenic 25.0%
! AAAACATGCTTGTTTGTATA+CGG - chr8_3:66632287-66632306 None:intergenic 25.0%
! GTCTTTCTTAGTTTAATCAT+AGG - chr8_3:66632395-66632414 None:intergenic 25.0%
! ATTATAGTGAAAGTGATCAT+GGG - chr8_3:66632563-66632582 None:intergenic 25.0%
! TATTATAGTGAAAGTGATCA+TGG - chr8_3:66632564-66632583 None:intergenic 25.0%
! TCACTATAATAAAAAGAGGA+TGG + chr8_3:66632573-66632592 Msa1303470:intron 25.0%
! CCGTTAGATGAAAATTAAAA+GGG - chr8_3:66632630-66632649 None:intergenic 25.0%
!!! CCCTTTTAATTTTCATCTAA+CGG + chr8_3:66632627-66632646 Msa1303470:intron 25.0%
! ACCGTTAGATGAAAATTAAA+AGG - chr8_3:66632631-66632650 None:intergenic 25.0%
! TCAAAATACTCATTGATGTT+TGG - chr8_3:66632662-66632681 None:intergenic 25.0%
! CCTAGAAGTTCTTAAATTAT+TGG - chr8_3:66632697-66632716 None:intergenic 25.0%
! CCAATAATTTAAGAACTTCT+AGG + chr8_3:66632694-66632713 Msa1303470:intron 25.0%
! ATATAAAGAGGATTAAGAGA+GGG - chr8_3:66632869-66632888 None:intergenic 25.0%
! TATATAAAGAGGATTAAGAG+AGG - chr8_3:66632870-66632889 None:intergenic 25.0%
! TTGTCCACTAATATATAAAG+AGG - chr8_3:66632881-66632900 None:intergenic 25.0%
! TATATGCAACTGAAATGAAA+CGG - chr8_3:66632924-66632943 None:intergenic 25.0%
! TTGATCTTGATTAAGATCAA+AGG - chr8_3:66633075-66633094 None:intergenic 25.0%
! GAAAATGAAGAAGAAGAATT+TGG - chr8_3:66633116-66633135 None:intergenic 25.0%
! AATTAATTAAAGGGGATCAA+AGG - chr8_3:66633321-66633340 None:intergenic 25.0%
!!! TTGATGATGTGATCTTAATT+AGG + chr8_3:66633340-66633359 Msa1303470:intron 25.0%
!!! GAATTGAATCTTTAATTTGG+AGG - chr8_3:66633844-66633863 None:intergenic 25.0%
!!! TATTAGTATTAGTGCTACTT+AGG + chr8_3:66633984-66634003 Msa1303470:intron 25.0%
!! TGAACAATCAAACTCAATTT+TGG - chr8_3:66634222-66634241 None:intergenic 25.0%
!!! AAAAGAGTTTATCACTTTTG+AGG + chr8_3:66634298-66634317 Msa1303470:CDS 25.0%
!!! TAGTTCATTGGTTCAATTTA+AGG + chr8_3:66634437-66634456 Msa1303470:three_prime_UTR 25.0%
! ATTTAAGGATATTGTTCACT+AGG + chr8_3:66634452-66634471 Msa1303470:three_prime_UTR 25.0%
! GTTAGTTATGAAATGATGAT+TGG + chr8_3:66634584-66634603 Msa1303470:three_prime_UTR 25.0%
! GAAATGATGATTGGAAATTA+AGG + chr8_3:66634593-66634612 Msa1303470:three_prime_UTR 25.0%
AATTTGACTCATAGAATACG+AGG - chr8_3:66631639-66631658 None:intergenic 30.0%
CTATTAAACTCAATCTCTGT+TGG + chr8_3:66631663-66631682 Msa1303470:intron 30.0%
AAAAAAATGCTAGGATCGAA+AGG + chr8_3:66631906-66631925 Msa1303470:intron 30.0%
AAATACACCACCAAAAACAA+TGG + chr8_3:66631948-66631967 Msa1303470:intron 30.0%
! AACTTTTGATATGGTCATCA+TGG - chr8_3:66632101-66632120 None:intergenic 30.0%
!! TTCAATTGGTTTGAGTTAAG+CGG - chr8_3:66632204-66632223 None:intergenic 30.0%
! GGATAAACACAATCTTTTGA+TGG - chr8_3:66632236-66632255 None:intergenic 30.0%
!!! GTGTTTATCCCTTTTGTTTT+CGG + chr8_3:66632246-66632265 Msa1303470:intron 30.0%
! ACAAGCATGTTTTTCTCTTA+AGG + chr8_3:66632294-66632313 Msa1303470:intron 30.0%
! ATGTTTTTCTCTTAAGGTGT+AGG + chr8_3:66632300-66632319 Msa1303470:intron 30.0%
TTATAGTGAAAGTGATCATG+GGG - chr8_3:66632562-66632581 None:intergenic 30.0%
!! AATGACAGGACATATTTTTG+AGG + chr8_3:66632767-66632786 Msa1303470:intron 30.0%
TATTTCACTATATGACGAGT+AGG + chr8_3:66632794-66632813 Msa1303470:intron 30.0%
! AAGAAGAATTTGGACTAGAA+AGG - chr8_3:66633106-66633125 None:intergenic 30.0%
TTTGTTTGGCAGTAATAAGA+TGG - chr8_3:66633194-66633213 None:intergenic 30.0%
!! TGATCTTAATTAGGTTGAGA+AGG + chr8_3:66633349-66633368 Msa1303470:intron 30.0%
AAGGTTAATATTCACTCAAG+TGG + chr8_3:66633368-66633387 Msa1303470:CDS 30.0%
!!! GTTTAGTCTTGTAGTTTTCA+TGG - chr8_3:66633421-66633440 None:intergenic 30.0%
GAGAATAATGAAGAAGATGA+TGG + chr8_3:66633550-66633569 Msa1303470:CDS 30.0%
!!! TCTTTTCTAGTTTGATGAGA+TGG - chr8_3:66634284-66634303 None:intergenic 30.0%
ATTAAGCTTGAGTGAGAATT+TGG + chr8_3:66634328-66634347 Msa1303470:CDS 30.0%
TTAAGCTTGAGTGAGAATTT+GGG + chr8_3:66634329-66634348 Msa1303470:CDS 30.0%
!! TTATCTTATGGATTAGTCCA+TGG + chr8_3:66634407-66634426 Msa1303470:CDS 30.0%
ATGATTGGAAATTAAGGTGA+AGG + chr8_3:66634599-66634618 Msa1303470:three_prime_UTR 30.0%
ATTAAGGTGAAGGACAAAAA+AGG + chr8_3:66634609-66634628 Msa1303470:three_prime_UTR 30.0%
TAAGAAATAGATGAACGAGA+TGG - chr8_3:66634780-66634799 None:intergenic 30.0%
! TTTGGAGACACCATTGTTTT+TGG - chr8_3:66631961-66631980 None:intergenic 35.0%
!!! GTCATTTTTCTTGCTTGGTT+TGG - chr8_3:66631979-66631998 None:intergenic 35.0%
!!! TCGTAGTCATTTTTCTTGCT+TGG - chr8_3:66631984-66632003 None:intergenic 35.0%
! ACACAATCTTTTGATGGAGT+TGG - chr8_3:66632230-66632249 None:intergenic 35.0%
TATAGTGAAAGTGATCATGG+GGG - chr8_3:66632561-66632580 None:intergenic 35.0%
! TAAATTATTGGAGTCGACTC+TGG - chr8_3:66632685-66632704 None:intergenic 35.0%
GGATCATCACAAGATATATG+TGG - chr8_3:66632838-66632857 None:intergenic 35.0%
! ATAAGGTGGTGGTATCATAT+TGG - chr8_3:66633034-66633053 None:intergenic 35.0%
! GATTAAGATCAAAGGCATGA+CGG - chr8_3:66633067-66633086 None:intergenic 35.0%
! AATTTGGACTAGAAAGGTCA+TGG - chr8_3:66633100-66633119 None:intergenic 35.0%
TTGATCTTGTGAGTCTAAGA+GGG - chr8_3:66633162-66633181 None:intergenic 35.0%
CATGTGGTAAGTTGTTTGTT+TGG - chr8_3:66633208-66633227 None:intergenic 35.0%
TACTTTACCTCTTGATCATG+TGG - chr8_3:66633224-66633243 None:intergenic 35.0%
TAATTAAAGGGGATCAAAGG+TGG - chr8_3:66633318-66633337 None:intergenic 35.0%
ATATTCACTCAAGTGGATCA+TGG + chr8_3:66633375-66633394 Msa1303470:CDS 35.0%
TAATCAAGAAGCTGATCATG+AGG + chr8_3:66633493-66633512 Msa1303470:CDS 35.0%
! GATGATGGTTTCTGATCAAA+CGG + chr8_3:66633565-66633584 Msa1303470:CDS 35.0%
ATGATGGTTTCTGATCAAAC+GGG + chr8_3:66633566-66633585 Msa1303470:CDS 35.0%
GTTTATGGTGTACGAGAATA+AGG + chr8_3:66634552-66634571 Msa1303470:three_prime_UTR 35.0%
AAAATCACACTACCTTCATC+TGG - chr8_3:66634658-66634677 None:intergenic 35.0%
GATATGGTCATCATGGATCA+AGG - chr8_3:66632094-66632113 None:intergenic 40.0%
!! CGGAAAGAAGTTGATGTCTT+TGG - chr8_3:66632184-66632203 None:intergenic 40.0%
!! GATGGAGTTGGTAGTTCAAT+TGG - chr8_3:66632218-66632237 None:intergenic 40.0%
AACACGCTCCGAAAACAAAA+GGG - chr8_3:66632257-66632276 None:intergenic 40.0%
GATTAAGAGAGGGAGAGAAT+GGG - chr8_3:66632859-66632878 None:intergenic 40.0%
TGAATCAGTGCAAGCAAAGT+AGG - chr8_3:66632951-66632970 None:intergenic 40.0%
TCAAGGCTGAGAGAATTGAA+GGG - chr8_3:66632984-66633003 None:intergenic 40.0%
ATCAAGGCTGAGAGAATTGA+AGG - chr8_3:66632985-66633004 None:intergenic 40.0%
GGTGGTATCATATTGGATGA+TGG - chr8_3:66633027-66633046 None:intergenic 40.0%
!! ATGACGGACGAAGATAGATA+AGG - chr8_3:66633051-66633070 None:intergenic 40.0%
CTTGATCTTGTGAGTCTAAG+AGG - chr8_3:66633163-66633182 None:intergenic 40.0%
CAACTTACCACATGATCAAG+AGG + chr8_3:66633214-66633233 Msa1303470:CDS 40.0%
AACACAAGCTGACAATTCGT+TGG + chr8_3:66633438-66633457 Msa1303470:CDS 40.0%
TGATCATGAGGATGGTACTT+CGG + chr8_3:66633505-66633524 Msa1303470:CDS 40.0%
CTGCTATTATCTGTTCCTTG+TGG - chr8_3:66633656-66633675 None:intergenic 40.0%
ATGTGGGATTAGACAAAGGA+AGG + chr8_3:66634088-66634107 Msa1303470:CDS 40.0%
CATAAGATAACGCCATGAGA+AGG - chr8_3:66634397-66634416 None:intergenic 40.0%
CTTCTCATGGCGTTATCTTA+TGG + chr8_3:66634395-66634414 Msa1303470:CDS 40.0%
CAATGAACTAAGCTCAACCA+TGG - chr8_3:66634427-66634446 None:intergenic 40.0%
CATGGTTGAGCTTAGTTCAT+TGG + chr8_3:66634425-66634444 Msa1303470:exon 40.0%
!!! GGAGACACCATTGTTTTTGG+TGG - chr8_3:66631958-66631977 None:intergenic 45.0%
GAACACGCTCCGAAAACAAA+AGG - chr8_3:66632258-66632277 None:intergenic 45.0%
GGATTAAGAGAGGGAGAGAA+TGG - chr8_3:66632860-66632879 None:intergenic 45.0%
GACGAAGATAGATAAGGTGG+TGG - chr8_3:66633045-66633064 None:intergenic 45.0%
ACGGACGAAGATAGATAAGG+TGG - chr8_3:66633048-66633067 None:intergenic 45.0%
CAAGAAGCTGATCATGAGGA+TGG + chr8_3:66633497-66633516 Msa1303470:CDS 45.0%
ATGTATACCTTTGGGCCTCT+TGG - chr8_3:66633752-66633771 None:intergenic 45.0%
! AGTCACTTTGCAACGCATGT+GGG + chr8_3:66634072-66634091 Msa1303470:intron 45.0%
ACGCATGTGGGATTAGACAA+AGG + chr8_3:66634084-66634103 Msa1303470:CDS 45.0%
! TGTTCAACAAGTTTTCCCCC+AGG + chr8_3:66634352-66634371 Msa1303470:CDS 45.0%
GCATCGTTGTAACCAGATGA+AGG + chr8_3:66634643-66634662 Msa1303470:three_prime_UTR 45.0%
!!! ATCAATTTTTTTTTTAAAAT+AGG + chr8_3:66631843-66631862 Msa1303470:intron 5.0%
!!! TTTTTAATATATTATCTTTT+TGG - chr8_3:66631869-66631888 None:intergenic 5.0%
!!! TTAATTTGATTTTTTATAAA+GGG - chr8_3:66633792-66633811 None:intergenic 5.0%
!!! ATTAATTTGATTTTTTATAA+AGG - chr8_3:66633793-66633812 None:intergenic 5.0%
!!! TTTTTATTTTCTTTTATAAT+AGG + chr8_3:66634676-66634695 Msa1303470:three_prime_UTR 5.0%
CACTATATGACGAGTAGGCC+TGG + chr8_3:66632799-66632818 Msa1303470:intron 50.0%
TGTGGCAACATGTCTACTCC+AGG - chr8_3:66632820-66632839 None:intergenic 50.0%
AGGATGGTACTTCGGTGAAG+TGG + chr8_3:66633513-66633532 Msa1303470:CDS 50.0%
AAGCAACCACTGTCACCACA+AGG + chr8_3:66633638-66633657 Msa1303470:CDS 50.0%
TCTGTTCCTTGTGGTGACAG+TGG - chr8_3:66633647-66633666 None:intergenic 50.0%
ACACCACTAAGACCCCTCTA+TGG + chr8_3:66633717-66633736 Msa1303470:CDS 50.0%
TTGGTCCACTCCTCCATAGA+GGG - chr8_3:66633733-66633752 None:intergenic 50.0%
! CAGTCACTTTGCAACGCATG+TGG + chr8_3:66634071-66634090 Msa1303470:intron 50.0%
AAGGAAGGCAAGACGTGCTT+TGG + chr8_3:66634103-66634122 Msa1303470:CDS 50.0%
AGAGGCTGCAATCCTTCTCA+TGG + chr8_3:66634382-66634401 Msa1303470:CDS 50.0%
CCTCCATAGAGGGGTCTTAG+TGG - chr8_3:66633723-66633742 None:intergenic 55.0%
CCACTAAGACCCCTCTATGG+AGG + chr8_3:66633720-66633739 Msa1303470:CDS 55.0%
AAGACCCCTCTATGGAGGAG+TGG + chr8_3:66633725-66633744 Msa1303470:CDS 55.0%
TGGTCCACTCCTCCATAGAG+GGG - chr8_3:66633732-66633751 None:intergenic 55.0%
CTTGGTCCACTCCTCCATAG+AGG - chr8_3:66633734-66633753 None:intergenic 55.0%
CTATGGAGGAGTGGACCAAG+AGG + chr8_3:66633734-66633753 Msa1303470:CDS 55.0%
TTTGGCTGCTGCTGCAGCAT+CGG + chr8_3:66634121-66634140 Msa1303470:CDS 55.0%
TTTCCCCCAGGATGAGAGAG+AGG + chr8_3:66634364-66634383 Msa1303470:CDS 55.0%
TGCAGCCTCTCTCTCATCCT+GGG - chr8_3:66634372-66634391 None:intergenic 55.0%
TTGCAGCCTCTCTCTCATCC+TGG - chr8_3:66634373-66634392 None:intergenic 55.0%
GAGTGGACCAAGAGGCCCAA+AGG + chr8_3:66633742-66633761 Msa1303470:CDS 60.0%
!! GCTGCTGCAGCATCGGCAAT+TGG + chr8_3:66634128-66634147 Msa1303470:CDS 60.0%
CAGCCTCTCTCTCATCCTGG+GGG - chr8_3:66634370-66634389 None:intergenic 60.0%
GCAGCCTCTCTCTCATCCTG+GGG - chr8_3:66634371-66634390 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 66631602 66634844 66631602 ID=Msa1303470;Name=Msa1303470
chr8_3 mRNA 66631602 66634844 66631602 ID=Msa1303470-mRNA-1;Parent=Msa1303470;Name=Msa1303470-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.66|0.5|0.75|0.66|0.75|4|411|345
chr8_3 exon 66631602 66631639 66631602 ID=Msa1303470-mRNA-1:exon:20218;Parent=Msa1303470-mRNA-1
chr8_3 exon 66632998 66633235 66632998 ID=Msa1303470-mRNA-1:exon:20219;Parent=Msa1303470-mRNA-1
chr8_3 exon 66633362 66633763 66633362 ID=Msa1303470-mRNA-1:exon:20220;Parent=Msa1303470-mRNA-1
chr8_3 exon 66634074 66634844 66634074 ID=Msa1303470-mRNA-1:exon:20221;Parent=Msa1303470-mRNA-1
chr8_3 CDS 66631602 66631639 66631602 ID=Msa1303470-mRNA-1:cds;Parent=Msa1303470-mRNA-1
chr8_3 CDS 66632998 66633235 66632998 ID=Msa1303470-mRNA-1:cds;Parent=Msa1303470-mRNA-1
chr8_3 CDS 66633362 66633763 66633362 ID=Msa1303470-mRNA-1:cds;Parent=Msa1303470-mRNA-1
chr8_3 CDS 66634074 66634433 66634074 ID=Msa1303470-mRNA-1:cds;Parent=Msa1303470-mRNA-1
chr8_3 three_prime_UTR 66634434 66634844 66634434 ID=Msa1303470-mRNA-1:three_prime_utr;Parent=Msa1303470-mRNA-1
Gene Sequence

>Msa1303470

ATGGAAACCTCTTCTCATAATTCAAATCTTAGTTCCTCCCTTGATTATTTTTGTGTCTATACATCCATCATCCAATATGATACCACCACCTTATCTATCTTCGTCCGTCATGCCTTTGATCTTAATCAAGATCAAAACCATGACCTTTCTAGTCCAAATTCTTCTTCTTCATTTTCTTCTCTATCAGCATCATATTCTACCCTCTTAGACTCACAAGATCAAGTTCAACAACCATCTTATTACTGCCAAACAAACAACTTACCACATGATCAAGAGGTTGAGAAGGTTAATATTCACTCAAGTGGATCATGGAATTCTTCAACTGCAGAAAACCATGAAAACTACAAGACTAAACACAAGCTGACAATTCGTTGGAAGAAAGAACAAATCAGTGATGAAATGAATAATAATCAAGAAGCTGATCATGAGGATGGTACTTCGGTGAAGTGGATGTCTTCAAAGATGAGAATAATGAAGAAGATGATGGTTTCTGATCAAACGGGTAGTTCTAACTTAACAAGTAACTCTAAGCTGATTAAGTTTGAAGATCAAAAGCAACCACTGTCACCACAAGGAACAGATAATAGCAGCAGCAATAATTATTCAACTATTAGGGTTTGCTCTGATTGCAACACCACTAAGACCCCTCTATGGAGGAGTGGACCAAGAGGCCCAAAGTCACTTTGCAACGCATGTGGGATTAGACAAAGGAAGGCAAGACGTGCTTTGGCTGCTGCTGCAGCATCGGCAATTGGTACAACAATTGCTGATCAGACAGCTTCTGTGAAGAGAAAAAAGTTGCAGAAGAAAAAAGAGAATAAATCCAAAATTGAGTTTGATTGTTCAACAGTGCATATGAAAAAGAAGCAGAAACTTGAAGCAAAACCATCTCATCAAACTAGAAAAGAGTTTATCACTTTTGAGGATTTGAAATTAAGCTTGAGTGAGAATTTGGGTGTTCAACAAGTTTTCCCCCAGGATGAGAGAGAGGCTGCAATCCTTCTCATGGCGTTATCTTATGGATTAGTCCATGGTTGA

Protein sequence

>Msa1303470

METSSHNSNLSSSLDYFCVYTSIIQYDTTTLSIFVRHAFDLNQDQNHDLSSPNSSSSFSSLSASYSTLLDSQDQVQQPSYYCQTNNLPHDQEVEKVNIHSSGSWNSSTAENHENYKTKHKLTIRWKKEQISDEMNNNQEADHEDGTSVKWMSSKMRIMKKMMVSDQTGSSNLTSNSKLIKFEDQKQPLSPQGTDNSSSNNYSTIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARRALAAAAASAIGTTIADQTASVKRKKLQKKKENKSKIEFDCSTVHMKKKQKLEAKPSHQTRKEFITFEDLKLSLSENLGVQQVFPQDEREAAILLMALSYGLVHG*