Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396950 | XP_013452335.1 | 88.961 | 308 | 11 | 3 | 1 | 289 | 51 | 354 | 0.0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396950 | sp|Q8LG95|PP332_ARATH | 65.158 | 221 | 58 | 2 | 20 | 221 | 23 | 243 | 5.23e-101 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396950 | A0A072UBE9 | 88.961 | 308 | 11 | 3 | 1 | 289 | 51 | 354 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa1396950 | 0.808925 | 2.436850e-50 | -8.615850e-47 |
| Msa0003470 | Msa1396950 | 0.867555 | 1.255330e-65 | -8.615850e-47 |
| Msa0007450 | Msa1396950 | 0.817536 | 3.134523e-52 | -8.615850e-47 |
| Msa0008850 | Msa1396950 | 0.803279 | 3.761319e-49 | -8.615850e-47 |
| Msa0017120 | Msa1396950 | 0.806181 | 9.316330e-50 | -8.615850e-47 |
| Msa0024680 | Msa1396950 | 0.829212 | 5.841624e-55 | -8.615850e-47 |
| Msa0027540 | Msa1396950 | 0.804490 | 2.106464e-49 | -8.615850e-47 |
| Msa0030310 | Msa1396950 | 0.867897 | 9.750589e-66 | -8.615850e-47 |
| Msa0030380 | Msa1396950 | 0.800495 | 1.403099e-48 | -8.615850e-47 |
| Msa0055280 | Msa1396950 | 0.802033 | 6.798501e-49 | -8.615850e-47 |
| Msa0065390 | Msa1396950 | 0.804972 | 1.670925e-49 | -8.615850e-47 |
| Msa0075310 | Msa1396950 | 0.800606 | 1.331899e-48 | -8.615850e-47 |
| Msa0079250 | Msa1396950 | 0.807989 | 3.860252e-50 | -8.615850e-47 |
| Msa0084680 | Msa1396950 | 0.801158 | 1.027542e-48 | -8.615850e-47 |
| Msa0095380 | Msa1396950 | 0.822183 | 2.714346e-53 | -8.615850e-47 |
| Msa0110710 | Msa1396950 | 0.804476 | 2.121121e-49 | -8.615850e-47 |
| Msa0120330 | Msa1396950 | 0.815193 | 1.048064e-51 | -8.615850e-47 |
| Msa1352290 | Msa1396950 | 0.819975 | 8.757763e-53 | -8.615850e-47 |
| Msa1354040 | Msa1396950 | 0.808983 | 2.368173e-50 | -8.615850e-47 |
| Msa1367940 | Msa1396950 | 0.817254 | 3.627600e-52 | -8.615850e-47 |
| Msa1373510 | Msa1396950 | 0.826974 | 2.020912e-54 | -8.615850e-47 |
| Msa1381130 | Msa1396950 | 0.829127 | 6.123073e-55 | -8.615850e-47 |
| Msa1390310 | Msa1396950 | 0.820094 | 8.224161e-53 | -8.615850e-47 |
| Msa1396950 | Msa1397050 | 0.811190 | 7.924920e-51 | -8.615850e-47 |
| Msa1396950 | Msa1397970 | 0.811285 | 7.556414e-51 | -8.615850e-47 |
| Msa1396950 | Msa1412080 | 0.818560 | 1.839524e-52 | -8.615850e-47 |
| Msa1396950 | Msa1431000 | 0.811346 | 7.329637e-51 | -8.615850e-47 |
| Msa1396950 | Msa1431730 | 0.800754 | 1.242431e-48 | -8.615850e-47 |
| Msa1396950 | Msa1432640 | 0.812824 | 3.489723e-51 | -8.615850e-47 |
| Msa1396950 | Msa1439960 | 0.802809 | 4.704398e-49 | -8.615850e-47 |
| Msa1396950 | Msa1444450 | 0.812276 | 4.598909e-51 | -8.615850e-47 |
| Msa1396950 | Msa1454110 | 0.801853 | 7.402864e-49 | -8.615850e-47 |
| Msa0614230 | Msa1396950 | 0.825679 | 4.109649e-54 | -8.615850e-47 |
| Msa0618010 | Msa1396950 | 0.807946 | 3.941756e-50 | -8.615850e-47 |
| Msa0638690 | Msa1396950 | 0.831270 | 1.835560e-55 | -8.615850e-47 |
| Msa0642650 | Msa1396950 | 0.858903 | 5.982620e-63 | -8.615850e-47 |
| Msa0667220 | Msa1396950 | 0.803812 | 2.915447e-49 | -8.615850e-47 |
| Msa0669850 | Msa1396950 | 0.841561 | 4.410729e-58 | -8.615850e-47 |
| Msa0678860 | Msa1396950 | 0.806294 | 8.819714e-50 | -8.615850e-47 |
| Msa0681890 | Msa1396950 | 0.832726 | 8.019375e-56 | -8.615850e-47 |
| Msa0682400 | Msa1396950 | 0.800123 | 1.670635e-48 | -8.615850e-47 |
| Msa0697400 | Msa1396950 | 0.809005 | 2.342655e-50 | -8.615850e-47 |
| Msa0703590 | Msa1396950 | 0.820252 | 7.566231e-53 | -8.615850e-47 |
| Msa0703720 | Msa1396950 | 0.813269 | 2.788478e-51 | -8.615850e-47 |
| Msa0709190 | Msa1396950 | 0.823436 | 1.386322e-53 | -8.615850e-47 |
| Msa0717510 | Msa1396950 | 0.814848 | 1.250186e-51 | -8.615850e-47 |
| Msa0725920 | Msa1396950 | 0.809131 | 2.201560e-50 | -8.615850e-47 |
| Msa0730180 | Msa1396950 | 0.809542 | 1.797593e-50 | -8.615850e-47 |
| Msa0763880 | Msa1396950 | 0.802081 | 6.643723e-49 | -8.615850e-47 |
| Msa0763910 | Msa1396950 | 0.801281 | 9.694504e-49 | -8.615850e-47 |
| Msa0775260 | Msa1396950 | 0.809361 | 1.965981e-50 | -8.615850e-47 |
| Msa0787720 | Msa1396950 | 0.803245 | 3.822151e-49 | -8.615850e-47 |
| Msa0789270 | Msa1396950 | 0.806579 | 7.679676e-50 | -8.615850e-47 |
| Msa0789280 | Msa1396950 | 0.805441 | 1.333193e-49 | -8.615850e-47 |
| Msa0790830 | Msa1396950 | 0.800156 | 1.645068e-48 | -8.615850e-47 |
| Msa0812660 | Msa1396950 | 0.801792 | 7.617488e-49 | -8.615850e-47 |
| Msa0135980 | Msa1396950 | 0.817688 | 2.896326e-52 | -8.615850e-47 |
| Msa0140220 | Msa1396950 | 0.811184 | 7.948398e-51 | -8.615850e-47 |
| Msa0141830 | Msa1396950 | 0.803797 | 2.936683e-49 | -8.615850e-47 |
| Msa0143080 | Msa1396950 | 0.823904 | 1.077564e-53 | -8.615850e-47 |
| Msa0145950 | Msa1396950 | 0.843832 | 1.099559e-58 | -8.615850e-47 |
| Msa0146470 | Msa1396950 | 0.863698 | 2.066900e-64 | -8.615850e-47 |
| Msa0149500 | Msa1396950 | 0.800591 | 1.341375e-48 | -8.615850e-47 |
| Msa0154770 | Msa1396950 | 0.808726 | 2.688066e-50 | -8.615850e-47 |
| Msa0162030 | Msa1396950 | 0.817602 | 3.029008e-52 | -8.615850e-47 |
| Msa0168100 | Msa1396950 | 0.803979 | 2.691752e-49 | -8.615850e-47 |
| Msa0169620 | Msa1396950 | 0.813039 | 3.132057e-51 | -8.615850e-47 |
| Msa0172350 | Msa1396950 | 0.822354 | 2.477646e-53 | -8.615850e-47 |
| Msa0173820 | Msa1396950 | 0.802357 | 5.830749e-49 | -8.615850e-47 |
| Msa0182930 | Msa1396950 | 0.820901 | 5.368659e-53 | -8.615850e-47 |
| Msa0183620 | Msa1396950 | 0.832158 | 1.108977e-55 | -8.615850e-47 |
| Msa0185390 | Msa1396950 | 0.826120 | 3.229048e-54 | -8.615850e-47 |
| Msa0194970 | Msa1396950 | 0.853893 | 1.767904e-61 | -8.615850e-47 |
| Msa0207000 | Msa1396950 | 0.819770 | 9.756185e-53 | -8.615850e-47 |
| Msa0208630 | Msa1396950 | 0.810060 | 1.390386e-50 | -8.615850e-47 |
| Msa0222070 | Msa1396950 | 0.803115 | 4.066857e-49 | -8.615850e-47 |
| Msa0222120 | Msa1396950 | 0.808637 | 2.808486e-50 | -8.615850e-47 |
| Msa0224730 | Msa1396950 | 0.800051 | 1.727604e-48 | -8.615850e-47 |
| Msa0236980 | Msa1396950 | 0.826309 | 2.912393e-54 | -8.615850e-47 |
| Msa1224670 | Msa1396950 | 0.814613 | 1.409396e-51 | -8.615850e-47 |
| Msa1237030 | Msa1396950 | 0.832288 | 1.029803e-55 | -8.615850e-47 |
| Msa1242330 | Msa1396950 | 0.808914 | 2.450472e-50 | -8.615850e-47 |
| Msa1249870 | Msa1396950 | 0.806876 | 6.648990e-50 | -8.615850e-47 |
| Msa1250670 | Msa1396950 | 0.805677 | 1.189155e-49 | -8.615850e-47 |
| Msa1265960 | Msa1396950 | 0.811844 | 5.713475e-51 | -8.615850e-47 |
| Msa1302460 | Msa1396950 | 0.812106 | 5.008500e-51 | -8.615850e-47 |
| Msa1316170 | Msa1396950 | 0.803549 | 3.306658e-49 | -8.615850e-47 |
| Msa1328850 | Msa1396950 | 0.808352 | 3.230579e-50 | -8.615850e-47 |
| Msa1337090 | Msa1396950 | 0.820557 | 6.441989e-53 | -8.615850e-47 |
| Msa0411520 | Msa1396950 | 0.800114 | 1.677899e-48 | -8.615850e-47 |
| Msa0417630 | Msa1396950 | 0.811924 | 5.488890e-51 | -8.615850e-47 |
| Msa0418220 | Msa1396950 | 0.803476 | 3.423111e-49 | -8.615850e-47 |
| Msa0419640 | Msa1396950 | -0.804022 | 2.636326e-49 | -8.615850e-47 |
| Msa0421800 | Msa1396950 | 0.814192 | 1.745843e-51 | -8.615850e-47 |
| Msa0431830 | Msa1396950 | 0.807249 | 5.543868e-50 | -8.615850e-47 |
| Msa0442880 | Msa1396950 | 0.800240 | 1.581422e-48 | -8.615850e-47 |
| Msa0469910 | Msa1396950 | -0.838037 | 3.647980e-57 | -8.615850e-47 |
| Msa0469970 | Msa1396950 | 0.824798 | 6.640414e-54 | -8.615850e-47 |
| Msa0482680 | Msa1396950 | 0.807060 | 6.079028e-50 | -8.615850e-47 |
| Msa0983880 | Msa1396950 | 0.948111 | 1.799618e-106 | -8.615850e-47 |
| Msa0990520 | Msa1396950 | 0.840613 | 7.824511e-58 | -8.615850e-47 |
| Msa1002040 | Msa1396950 | 0.822553 | 2.227902e-53 | -8.615850e-47 |
| Msa1015060 | Msa1396950 | 0.829554 | 4.824133e-55 | -8.615850e-47 |
| Msa1038320 | Msa1396950 | 0.810541 | 1.094961e-50 | -8.615850e-47 |
| Msa1044340 | Msa1396950 | 0.818806 | 1.617676e-52 | -8.615850e-47 |
| Msa1049410 | Msa1396950 | 0.808598 | 2.862327e-50 | -8.615850e-47 |
| Msa1097380 | Msa1396950 | 0.825800 | 3.848014e-54 | -8.615850e-47 |
| Msa0246690 | Msa1396950 | 0.803747 | 3.007927e-49 | -8.615850e-47 |
| Msa0259330 | Msa1396950 | 0.830151 | 3.450759e-55 | -8.615850e-47 |
| Msa0259560 | Msa1396950 | 0.811580 | 6.520209e-51 | -8.615850e-47 |
| Msa0263620 | Msa1396950 | 0.807369 | 5.228972e-50 | -8.615850e-47 |
| Msa0267760 | Msa1396950 | 0.825884 | 3.673673e-54 | -8.615850e-47 |
| Msa0275030 | Msa1396950 | 0.821139 | 4.731401e-53 | -8.615850e-47 |
| Msa0284780 | Msa1396950 | 0.835953 | 1.242471e-56 | -8.615850e-47 |
| Msa0288240 | Msa1396950 | 0.807814 | 4.205292e-50 | -8.615850e-47 |
| Msa0296760 | Msa1396950 | 0.800648 | 1.305906e-48 | -8.615850e-47 |
| Msa0317260 | Msa1396950 | 0.825717 | 4.025838e-54 | -8.615850e-47 |
| Msa0319200 | Msa1396950 | 0.801960 | 7.035200e-49 | -8.615850e-47 |
| Msa0326670 | Msa1396950 | 0.808277 | 3.352604e-50 | -8.615850e-47 |
| Msa0328210 | Msa1396950 | 0.802692 | 4.973191e-49 | -8.615850e-47 |
| Msa0339860 | Msa1396950 | 0.810955 | 8.911689e-51 | -8.615850e-47 |
| Msa0344640 | Msa1396950 | 0.806319 | 8.715238e-50 | -8.615850e-47 |
| Msa1111700 | Msa1396950 | 0.803631 | 3.179868e-49 | -8.615850e-47 |
| Msa1112610 | Msa1396950 | 0.801816 | 7.532401e-49 | -8.615850e-47 |
| Msa1125780 | Msa1396950 | 0.804705 | 1.900531e-49 | -8.615850e-47 |
| Msa1125950 | Msa1396950 | 0.806546 | 7.804261e-50 | -8.615850e-47 |
| Msa1132520 | Msa1396950 | 0.819212 | 1.307437e-52 | -8.615850e-47 |
| Msa1135690 | Msa1396950 | 0.812258 | 4.640067e-51 | -8.615850e-47 |
| Msa1149760 | Msa1396950 | 0.811119 | 8.209052e-51 | -8.615850e-47 |
| Msa1159100 | Msa1396950 | 0.816671 | 4.903005e-52 | -8.615850e-47 |
| Msa1171340 | Msa1396950 | 0.815159 | 1.066329e-51 | -8.615850e-47 |
| Msa1200920 | Msa1396950 | 0.814882 | 1.228427e-51 | -8.615850e-47 |
| Msa1206020 | Msa1396950 | 0.800318 | 1.524456e-48 | -8.615850e-47 |
| Msa0487910 | Msa1396950 | 0.811868 | 5.644654e-51 | -8.615850e-47 |
| Msa0490300 | Msa1396950 | 0.818935 | 1.511609e-52 | -8.615850e-47 |
| Msa0490350 | Msa1396950 | 0.809781 | 1.596587e-50 | -8.615850e-47 |
| Msa0508200 | Msa1396950 | 0.817976 | 2.493710e-52 | -8.615850e-47 |
| Msa0514260 | Msa1396950 | 0.806425 | 8.278919e-50 | -8.615850e-47 |
| Msa0520320 | Msa1396950 | 0.803979 | 2.691752e-49 | -8.615850e-47 |
| Msa0526710 | Msa1396950 | 0.820820 | 5.603414e-53 | -8.615850e-47 |
| Msa0527590 | Msa1396950 | 0.838950 | 2.120854e-57 | -8.615850e-47 |
| Msa0527600 | Msa1396950 | 0.802709 | 4.933720e-49 | -8.615850e-47 |
| Msa0535030 | Msa1396950 | 0.830331 | 3.118928e-55 | -8.615850e-47 |
| Msa0535060 | Msa1396950 | 0.827999 | 1.146824e-54 | -8.615850e-47 |
| Msa0546380 | Msa1396950 | 0.822720 | 2.036435e-53 | -8.615850e-47 |
| Msa0546740 | Msa1396950 | 0.814311 | 1.643499e-51 | -8.615850e-47 |
| Msa0564930 | Msa1396950 | 0.806726 | 7.150439e-50 | -8.615850e-47 |
| Msa0575990 | Msa1396950 | -0.813070 | 3.082272e-51 | -8.615850e-47 |
| Msa0576100 | Msa1396950 | -0.809976 | 1.449855e-50 | -8.615850e-47 |
| Msa0576980 | Msa1396950 | 0.806807 | 6.874901e-50 | -8.615850e-47 |
| Msa0591060 | Msa1396950 | 0.821238 | 4.490630e-53 | -8.615850e-47 |
| Msa0591770 | Msa1396950 | 0.826330 | 2.878442e-54 | -8.615850e-47 |
| Msa0852730 | Msa1396950 | 0.814281 | 1.668438e-51 | -8.615850e-47 |
| Msa0874760 | Msa1396950 | 0.801311 | 9.557879e-49 | -8.615850e-47 |
| Msa0877420 | Msa1396950 | 0.806713 | 7.197590e-50 | -8.615850e-47 |
| Msa0883030 | Msa1396950 | 0.808666 | 2.768988e-50 | -8.615850e-47 |
| Msa0890250 | Msa1396950 | 0.817037 | 4.059169e-52 | -8.615850e-47 |
| Msa0900320 | Msa1396950 | 0.811955 | 5.403878e-51 | -8.615850e-47 |
| Msa0903330 | Msa1396950 | 0.826940 | 2.058262e-54 | -8.615850e-47 |
| Msa0907700 | Msa1396950 | 0.846557 | 2.015879e-59 | -8.615850e-47 |
| Msa0914900 | Msa1396950 | 0.941726 | 2.515342e-101 | -8.615850e-47 |
| Msa0922540 | Msa1396950 | 0.803662 | 3.132117e-49 | -8.615850e-47 |
| Msa0925160 | Msa1396950 | 0.847345 | 1.226786e-59 | -8.615850e-47 |
| Msa0930330 | Msa1396950 | 0.807529 | 4.834397e-50 | -8.615850e-47 |
| Msa0942730 | Msa1396950 | 0.805630 | 1.216541e-49 | -8.615850e-47 |
| Msa0944710 | Msa1396950 | 0.803740 | 3.017580e-49 | -8.615850e-47 |
| Msa0955260 | Msa1396950 | 0.824572 | 7.505431e-54 | -8.615850e-47 |
| Msa0958020 | Msa1396950 | 0.830943 | 2.208856e-55 | -8.615850e-47 |
| Msa0959010 | Msa1396950 | 0.820063 | 8.361822e-53 | -8.615850e-47 |
| Msa0965960 | Msa1396950 | 0.849203 | 3.759057e-60 | -8.615850e-47 |
| Msa0971860 | Msa1396950 | 0.810724 | 9.996676e-51 | -8.615850e-47 |
| Msa0972730 | Msa1396950 | 0.820160 | 7.944433e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396950 | MtrunA17_Chr6g0470101 | 88.961 | 308 | 11 | 3 | 1 | 289 | 51 | 354 | 0.0 | 521 |
| Msa1396950 | MtrunA17_Chr3g0086601 | 41.791 | 201 | 97 | 3 | 41 | 222 | 75 | 274 | 2.93e-44 | 151 |
| Msa1396950 | MtrunA17_Chr5g0398991 | 34.615 | 156 | 85 | 2 | 63 | 201 | 81 | 236 | 1.19e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396950 | AT4G21190.1 | 65.158 | 221 | 58 | 2 | 20 | 221 | 23 | 243 | 5.32e-102 | 300 |
| Msa1396950 | AT4G18975.2 | 44.162 | 197 | 90 | 3 | 42 | 219 | 58 | 253 | 4.50e-49 | 164 |
| Msa1396950 | AT4G18975.3 | 44.162 | 197 | 90 | 3 | 42 | 219 | 85 | 280 | 9.32e-49 | 164 |
| Msa1396950 | AT4G18975.4 | 44.162 | 197 | 90 | 3 | 42 | 219 | 85 | 280 | 9.32e-49 | 164 |
| Msa1396950 | AT4G18975.1 | 44.162 | 197 | 90 | 3 | 42 | 219 | 85 | 280 | 9.32e-49 | 164 |
| Msa1396950 | AT1G04590.1 | 34.615 | 182 | 99 | 3 | 40 | 201 | 131 | 312 | 7.46e-26 | 105 |
| Msa1396950 | AT1G04590.2 | 34.595 | 185 | 98 | 4 | 40 | 201 | 131 | 315 | 2.01e-24 | 101 |
Find 101 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGTGGACTTCGCCATTTC+AGG | 0.183949 | tig0022090:+1863 | Msa1396950:intergenic |
| ACGTATCTATCAACTTTATT+AGG | 0.201297 | tig0022090:+2306 | Msa1396950:intergenic |
| TCCTATAATTACAGTGAAAA+AGG | 0.241597 | tig0022090:-4371 | Msa1396950:intron |
| TTACGGCCAGGTTTGGGTTT+TGG | 0.249976 | tig0022090:+6088 | Msa1396950:intergenic |
| TGGTAGCCATTTCATTTATA+AGG | 0.263319 | tig0022090:-1930 | Msa1396950:three_prime_UTR |
| AAAATGTAAGCCTGAGAATT+TGG | 0.265784 | tig0022090:-1953 | Msa1396950:three_prime_UTR |
| GACAATGTTCAACGAAATTC+AGG | 0.282692 | tig0022090:-2273 | Msa1396950:CDS |
| AATGTCAAAGAAGAAGTTTA+TGG | 0.291907 | tig0022090:-4430 | Msa1396950:CDS |
| AGATGAGTCATCTGAGTTTA+CGG | 0.299452 | tig0022090:-2148 | Msa1396950:CDS |
| CCGAGATTTACGGCCAGGTT+TGG | 0.305873 | tig0022090:+6081 | Msa1396950:intergenic |
| GAACAGGATGCCGATTTAAT+AGG | 0.309673 | tig0022090:-2192 | Msa1396950:CDS |
| CTTCAATTCAGCATTGATAC+TGG | 0.319784 | tig0022090:+1814 | Msa1396950:intergenic |
| AATGCATATAGGCTTTGATT+AGG | 0.320445 | tig0022090:-1728 | Msa1396950:three_prime_UTR |
| TACACACAAAATCATTATTT+CGG | 0.321174 | tig0022090:-2045 | Msa1396950:three_prime_UTR |
| TTTCCTGAATGCATAATATA+TGG | 0.334719 | tig0022090:-1770 | Msa1396950:three_prime_UTR |
| CTAACTCCGCCCGAGATTTA+CGG | 0.342115 | tig0022090:+6071 | Msa1396950:intergenic |
| TCTCCATATATTATGCATTC+AGG | 0.344803 | tig0022090:+1767 | Msa1396950:intergenic |
| AAGGAAAGCGTGTAAGAATC+AGG | 0.347993 | tig0022090:-2341 | Msa1396950:CDS |
| TGAAACTATAGGTAACAAAA+TGG | 0.351629 | tig0022090:-4122 | Msa1396950:intron |
| GACCAAGATATCCTCGAGTT+TGG | 0.361562 | tig0022090:-5833 | Msa1396950:CDS |
| TGACTCATCTGAAATTTGTT+TGG | 0.365964 | tig0022090:+2161 | Msa1396950:intergenic |
| CGAGATTTACGGCCAGGTTT+GGG | 0.373990 | tig0022090:+6082 | Msa1396950:intergenic |
| TTGACGAAGCAGAAGAGCTT+TGG | 0.377250 | tig0022090:-4023 | Msa1396950:CDS |
| TATTTGATATGTTAATTTGT+TGG | 0.381277 | tig0022090:+5979 | Msa1396950:intergenic |
| GGTTTCCATGCCTATTAAAT+CGG | 0.386492 | tig0022090:+2182 | Msa1396950:intergenic |
| AAGTGGATGATGATGGATTT+GGG | 0.389153 | tig0022090:+6161 | Msa1396950:intergenic |
| ATGCATATAGGCTTTGATTA+GGG | 0.389204 | tig0022090:-1727 | Msa1396950:three_prime_UTR |
| CGAGGTAAGGTGAAGACATT+AGG | 0.390237 | tig0022090:-1999 | Msa1396950:three_prime_UTR |
| GAAGTGGATGATGATGGATT+TGG | 0.396162 | tig0022090:+6160 | Msa1396950:intergenic |
| TAGTAGTTCTGTTGTCTCAA+TGG | 0.409178 | tig0022090:-2457 | Msa1396950:CDS |
| TTCCAAACTCGAGGATATCT+TGG | 0.417267 | tig0022090:+5831 | Msa1396950:intergenic |
| TGATATCCTTATAAATGAAA+TGG | 0.417527 | tig0022090:+1924 | Msa1396950:intergenic |
| AGAAGAGACTTCAGAGTTAA+CGG | 0.420834 | tig0022090:-2229 | Msa1396950:CDS |
| TCTACTTCAGATTCCTGAAA+TGG | 0.427650 | tig0022090:-1876 | Msa1396950:three_prime_UTR |
| AAGGTATTTGCTGCTGCAAA+AGG | 0.436480 | tig0022090:-5861 | Msa1396950:CDS |
| TGAATTGAAGTTGGGTACTT+TGG | 0.441846 | tig0022090:-1801 | Msa1396950:three_prime_UTR |
| CCAAACCTGGCCGTAAATCT+CGG | 0.445698 | tig0022090:-6081 | Msa1396950:five_prime_UTR |
| CTGCTTGTGGCGGTGGCTGA+TGG | 0.447414 | tig0022090:+6048 | Msa1396950:intergenic |
| GCATAATATATGGAGATTGT+AGG | 0.449323 | tig0022090:-1760 | Msa1396950:three_prime_UTR |
| CTATATTCCCATTGTGGTGG+TGG | 0.450226 | tig0022090:+2372 | Msa1396950:intergenic |
| AAAATATCCACCACCACAAT+GGG | 0.452410 | tig0022090:-2379 | Msa1396950:CDS |
| ACTCGAGGATATCTTGGTCT+TGG | 0.456302 | tig0022090:+5837 | Msa1396950:intergenic |
| TTCGACTTGCTGCTGATGTA+AGG | 0.458742 | tig0022090:+6129 | Msa1396950:intergenic |
| CTCTTGATACCTATGTCGCT+TGG | 0.459035 | tig0022090:-4405 | Msa1396950:CDS |
| AGCATTACTGCTTGTGGCGG+TGG | 0.467846 | tig0022090:+6041 | Msa1396950:intergenic |
| TATCAATGCTGAATTGAAGT+TGG | 0.470532 | tig0022090:-1810 | Msa1396950:three_prime_UTR |
| ATGTAAGGTTGGTGTGGAAG+TGG | 0.475787 | tig0022090:+6144 | Msa1396950:intergenic |
| CATGTAGGTATTTGCAGACA+TGG | 0.476328 | tig0022090:-2499 | Msa1396950:intron |
| GGACGATGAACAATTCGAAC+AGG | 0.477783 | tig0022090:-2208 | Msa1396950:CDS |
| TCCGCCCGAGATTTACGGCC+AGG | 0.477901 | tig0022090:+6076 | Msa1396950:intergenic |
| AGTTCTGTTGTCTCAATGGT+TGG | 0.480356 | tig0022090:-2453 | Msa1396950:CDS |
| AATGGTTGGAAATGTCTTCA+AGG | 0.484077 | tig0022090:-2439 | Msa1396950:CDS |
| GATATGTTAATTTGTTGGTA+TGG | 0.485734 | tig0022090:+5984 | Msa1396950:intergenic |
| CTTCAAGGAGCTAGGTATGA+TGG | 0.487411 | tig0022090:-2424 | Msa1396950:CDS |
| CATAATATATGGAGATTGTA+GGG | 0.487894 | tig0022090:-1759 | Msa1396950:three_prime_UTR |
| ATATCTATCTACTGTAAAAG+AGG | 0.491255 | tig0022090:-3943 | Msa1396950:CDS |
| ATCAATGCTGAATTGAAGTT+GGG | 0.492173 | tig0022090:-1809 | Msa1396950:three_prime_UTR |
| CTTGCATGATAAGATGTTTG+AGG | 0.498325 | tig0022090:-3920 | Msa1396950:intron |
| TCTTGATACCTATGTCGCTT+GGG | 0.501458 | tig0022090:-4404 | Msa1396950:CDS |
| CAAACCTGGCCGTAAATCTC+GGG | 0.502020 | tig0022090:-6080 | Msa1396950:five_prime_UTR |
| GAAGTTCTGTGTTATACTGT+TGG | 0.504569 | tig0022090:-1695 | Msa1396950:three_prime_UTR |
| AACAAAATGGATGTTAAGCA+AGG | 0.507980 | tig0022090:-4109 | Msa1396950:CDS |
| ATGGCTACCACCAAATTCTC+AGG | 0.509342 | tig0022090:+1943 | Msa1396950:intergenic |
| TTGTGTGTAACCAACATCAA+TGG | 0.511366 | tig0022090:+2059 | Msa1396950:intergenic |
| TCTCGTTATACATCTAAACT+TGG | 0.517938 | tig0022090:+2123 | Msa1396950:intergenic |
| CTACATGCTGTTACGAGGTA+AGG | 0.523242 | tig0022090:-2012 | Msa1396950:three_prime_UTR |
| ATTGAGACAACAGAACTACT+AGG | 0.527919 | tig0022090:+2459 | Msa1396950:intergenic |
| TGCCCGCCAAAACCCAAACC+TGG | 0.542227 | tig0022090:-6094 | Msa1396950:five_prime_UTR |
| GCTCTTCTGCTTCGTCAACT+CGG | 0.545541 | tig0022090:+4028 | Msa1396950:intergenic |
| TTTCTGTTGGCCATTGATGT+TGG | 0.548156 | tig0022090:-2069 | Msa1396950:three_prime_UTR |
| TGATAGATACGTAAGAAAGC+AGG | 0.551062 | tig0022090:-2295 | Msa1396950:CDS |
| ACTTGCTGCTGATGTAAGGT+TGG | 0.552667 | tig0022090:+6133 | Msa1396950:intergenic |
| ACTAACAGATAAGTTTCTGT+TGG | 0.553495 | tig0022090:-2082 | Msa1396950:three_prime_UTR |
| GATGTATAACGAGAGAAAGA+TGG | 0.554815 | tig0022090:-2114 | Msa1396950:exon |
| TTCTAGTTCCCAAGCGACAT+AGG | 0.558781 | tig0022090:+4396 | Msa1396950:intergenic |
| CTGCTGATGTAAGGTTGGTG+TGG | 0.558823 | tig0022090:+6138 | Msa1396950:intergenic |
| GGATGCCGATTTAATAGGCA+TGG | 0.559417 | tig0022090:-2187 | Msa1396950:CDS |
| ATGTATCTATATTCCCATTG+TGG | 0.561013 | tig0022090:+2366 | Msa1396950:intergenic |
| AAGGGTCAAGGAAAGACAAT+GGG | 0.563191 | tig0022090:-4090 | Msa1396950:CDS |
| TTATTAGTCTTCCAAACTCG+AGG | 0.571818 | tig0022090:+5822 | Msa1396950:intergenic |
| GAACATAACAACTTATACTG+TGG | 0.577110 | tig0022090:+1847 | Msa1396950:intergenic |
| GGAAATGTCTTCAAGGAGCT+AGG | 0.581726 | tig0022090:-2432 | Msa1396950:CDS |
| ATTACTTAATGCTTTAGCAG+AGG | 0.581952 | tig0022090:-4055 | Msa1396950:CDS |
| ATGTAAGCCTGAGAATTTGG+TGG | 0.593101 | tig0022090:-1950 | Msa1396950:three_prime_UTR |
| GGTGTGGAAGTGGATGATGA+TGG | 0.594460 | tig0022090:+6154 | Msa1396950:intergenic |
| CGTGTAAGAATCAGGGTGCA+AGG | 0.595586 | tig0022090:-2333 | Msa1396950:CDS |
| ACGAAATTCAGGCTTAAGAG+AGG | 0.595718 | tig0022090:-2262 | Msa1396950:CDS |
| TGGGAATATAGATACATCAA+AGG | 0.609942 | tig0022090:-2360 | Msa1396950:CDS |
| AGGAAAGCGTGTAAGAATCA+GGG | 0.610217 | tig0022090:-2340 | Msa1396950:CDS |
| TGGATGTTAAGCAAGGGTCA+AGG | 0.625921 | tig0022090:-4102 | Msa1396950:CDS |
| TATCTATATTCCCATTGTGG+TGG | 0.627567 | tig0022090:+2369 | Msa1396950:intergenic |
| CTTACCTCGTAACAGCATGT+AGG | 0.629695 | tig0022090:+2013 | Msa1396950:intergenic |
| TATGGTTTAGCAATAAGTAG+AGG | 0.629980 | tig0022090:+6002 | Msa1396950:intergenic |
| ACAAAATGGATGTTAAGCAA+GGG | 0.632530 | tig0022090:-4108 | Msa1396950:CDS |
| CAAGGGTCAAGGAAAGACAA+TGG | 0.634494 | tig0022090:-4091 | Msa1396950:CDS |
| GACTCCTACATGCTGTTACG+AGG | 0.640590 | tig0022090:-2017 | Msa1396950:three_prime_UTR |
| ACCTGGCCGTAAATCTCGGG+CGG | 0.643892 | tig0022090:-6077 | Msa1396950:five_prime_UTR |
| AGTGAAAGCATTACTGCTTG+TGG | 0.656125 | tig0022090:+6035 | Msa1396950:intergenic |
| AAAGTTGTTAATGCAGTACA+CGG | 0.674701 | tig0022090:-3998 | Msa1396950:CDS |
| GAAAGCATTACTGCTTGTGG+CGG | 0.705239 | tig0022090:+6038 | Msa1396950:intergenic |
| GTAGGTATTTGCAGACATGG+AGG | 0.706718 | tig0022090:-2496 | Msa1396950:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGTAAAAAGATTAATT+TGG | - | tig0022090:1590-1609 | Msa1396950:three_prime_UTR | 10.0% |
| !! | AAAATAATTACTCAAATTTA+AGG | + | tig0022090:3950-3969 | Msa1396950:intergenic | 10.0% |
| !! | TTATATATATTCTGTAAATA+TGG | - | tig0022090:4092-4111 | Msa1396950:CDS | 10.0% |
| !!! | TATTTGATATGTTAATTTGT+TGG | + | tig0022090:1810-1829 | Msa1396950:intergenic | 15.0% |
| !! | AATAACTAAGTAGTTATTTA+TGG | - | tig0022090:4743-4762 | Msa1396950:intron | 15.0% |
| !!! | TTGAAACTAATATTTTAGTT+CGG | - | tig0022090:5102-5121 | Msa1396950:intron | 15.0% |
| !! | TGGAAGACTAATAAAAAAAT+TGG | - | tig0022090:1973-1992 | Msa1396950:three_prime_UTR | 20.0% |
| !!! | AAAAATTGGAACTATTTCTA+AGG | - | tig0022090:1987-2006 | Msa1396950:three_prime_UTR | 20.0% |
| !! | TAAATTTAATAACATGTGTG+TGG | - | tig0022090:2162-2181 | Msa1396950:CDS | 20.0% |
| !! | AAATTTAATAACATGTGTGT+GGG | - | tig0022090:2163-2182 | Msa1396950:CDS | 20.0% |
| !! | AATCTTAGTAGTTTATACTT+TGG | - | tig0022090:2564-2583 | Msa1396950:intron | 20.0% |
| !! | AATGAACATAAAAAATCACA+AGG | + | tig0022090:3513-3532 | Msa1396950:intergenic | 20.0% |
| !!! | AAATTACTTTCTGAAACTAT+AGG | - | tig0022090:3653-3672 | Msa1396950:intron | 20.0% |
| !! | TTGTATATTCAAAGTTCAAA+TGG | - | tig0022090:4002-4021 | Msa1396950:CDS | 20.0% |
| !! | AAAGCTATTAGAGTAAAAAT+AGG | - | tig0022090:4048-4067 | Msa1396950:CDS | 20.0% |
| !! | ATTTGCATGTTTACTATATT+AGG | + | tig0022090:4803-4822 | Msa1396950:intergenic | 20.0% |
| !! | TTTCTTAAGAAGTAAACATA+CGG | - | tig0022090:4997-5016 | Msa1396950:intron | 20.0% |
| !! | ATTATTATTATGTGCTTTAG+TGG | + | tig0022090:5203-5222 | Msa1396950:intergenic | 20.0% |
| !! | ACAAACAAATGTTGTTAATA+TGG | - | tig0022090:5230-5249 | Msa1396950:intron | 20.0% |
| !! | TACACACAAAATCATTATTT+CGG | - | tig0022090:5741-5760 | Msa1396950:intron | 20.0% |
| !! | TGATATCCTTATAAATGAAA+TGG | + | tig0022090:5865-5884 | Msa1396950:intergenic | 20.0% |
| !!! | GTATAATTGTTTTTGTATCA+AGG | + | tig0022090:6169-6188 | Msa1396950:intergenic | 20.0% |
| !!! | GATATGTTAATTTGTTGGTA+TGG | + | tig0022090:1805-1824 | Msa1396950:intergenic | 25.0% |
| !!! | TCCTTAGTTCTATAGTTTTT+AGG | - | tig0022090:1857-1876 | Msa1396950:three_prime_UTR | 25.0% |
| !!! | CCTTAGTTCTATAGTTTTTA+GGG | - | tig0022090:1858-1877 | Msa1396950:three_prime_UTR | 25.0% |
| !! | ATGTCTTAGATAAAAAGTGT+TGG | - | tig0022090:2207-2226 | Msa1396950:CDS | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | tig0022090:2444-2463 | Msa1396950:intergenic | 25.0% |
| !!! | AAAAATTGGTGTTTTTGTTG+AGG | - | tig0022090:2822-2841 | Msa1396950:intron | 25.0% |
| !!! | AAAATTGGTGTTTTTGTTGA+GGG | - | tig0022090:2823-2842 | Msa1396950:intron | 25.0% |
| ! | ATTACCGAGTTGTAAAATAT+TGG | - | tig0022090:2892-2911 | Msa1396950:intron | 25.0% |
| ! | AATGTCAAAGAAGAAGTTTA+TGG | - | tig0022090:3356-3375 | Msa1396950:intron | 25.0% |
| ! | TCCTATAATTACAGTGAAAA+AGG | - | tig0022090:3415-3434 | Msa1396950:intron | 25.0% |
| !!! | ACCTTTTTCACTGTAATTAT+AGG | + | tig0022090:3419-3438 | Msa1396950:intergenic | 25.0% |
| ! | TGAAACTATAGGTAACAAAA+TGG | - | tig0022090:3664-3683 | Msa1396950:intron | 25.0% |
| !! | ATTTTATCAAAGAATCTACG+TGG | + | tig0022090:3822-3841 | Msa1396950:intergenic | 25.0% |
| ! | ATATCTATCTACTGTAAAAG+AGG | - | tig0022090:3843-3862 | Msa1396950:intron | 25.0% |
| ! | TCAAATGGCAAAATATACAT+TGG | - | tig0022090:4017-4036 | Msa1396950:CDS | 25.0% |
| !!! | TTTTTTCAGCATATTTCCAA+TGG | + | tig0022090:4236-4255 | Msa1396950:intergenic | 25.0% |
| ! | GGAAATATGCTGAAAAAAAA+AGG | - | tig0022090:4238-4257 | Msa1396950:intron | 25.0% |
| ! | AAATAACTGAATGAAAACAG+AGG | - | tig0022090:4298-4317 | Msa1396950:intron | 25.0% |
| ! | AAAAATCAAATAGAGTGGTA+TGG | - | tig0022090:4580-4599 | Msa1396950:intron | 25.0% |
| !!! | AGTGTTGTTATTTATAGACT+CGG | - | tig0022090:4662-4681 | Msa1396950:intron | 25.0% |
| ! | ACAAATGTTGTTAATATGGA+TGG | - | tig0022090:5234-5253 | Msa1396950:intron | 25.0% |
| ! | AATTGAGTAAAATATTGAGC+CGG | + | tig0022090:5264-5283 | Msa1396950:intergenic | 25.0% |
| !! | TTTTACTCAATTTCTCATGT+AGG | - | tig0022090:5272-5291 | Msa1396950:intron | 25.0% |
| ! | ACGTATCTATCAACTTTATT+AGG | + | tig0022090:5483-5502 | Msa1396950:intergenic | 25.0% |
| ! | TTTCCTGAATGCATAATATA+TGG | - | tig0022090:6016-6035 | Msa1396950:CDS | 25.0% |
| ! | CATAATATATGGAGATTGTA+GGG | - | tig0022090:6027-6046 | Msa1396950:exon | 25.0% |
| TATGGTTTAGCAATAAGTAG+AGG | + | tig0022090:1787-1806 | Msa1396950:intergenic | 30.0% | |
| CCCTAAAAACTATAGAACTA+AGG | + | tig0022090:1861-1880 | Msa1396950:intergenic | 30.0% | |
| !! | CTTTTTATCTAAGACATGTC+CGG | + | tig0022090:2204-2223 | Msa1396950:intergenic | 30.0% |
| !!! | GACACAGTGACTTTTTTATA+TGG | + | tig0022090:2715-2734 | Msa1396950:intergenic | 30.0% |
| ! | ATTTTTATGACTTTAACCCG+TGG | + | tig0022090:2808-2827 | Msa1396950:intergenic | 30.0% |
| CGGGTTAAAGTCATAAAAAT+TGG | - | tig0022090:2808-2827 | Msa1396950:intron | 30.0% | |
| ! | ATGGCCAATATTTTACAACT+CGG | + | tig0022090:2899-2918 | Msa1396950:intergenic | 30.0% |
| !!! | CACCATGGTGTTTTATTTTA+TGG | - | tig0022090:2979-2998 | Msa1396950:intron | 30.0% |
| !!! | CATGGTGTTTTATTTTATGG+CGG | - | tig0022090:2982-3001 | Msa1396950:intron | 30.0% |
| ! | TATTTTATGGCGGTTCAAAA+TGG | - | tig0022090:2992-3011 | Msa1396950:intron | 30.0% |
| TTTATGTTCAACTCTCTTCA+TGG | - | tig0022090:3216-3235 | Msa1396950:intron | 30.0% | |
| TTATGTTCAACTCTCTTCAT+GGG | - | tig0022090:3217-3236 | Msa1396950:intron | 30.0% | |
| AACAAAATGGATGTTAAGCA+AGG | - | tig0022090:3677-3696 | Msa1396950:intron | 30.0% | |
| ACAAAATGGATGTTAAGCAA+GGG | - | tig0022090:3678-3697 | Msa1396950:intron | 30.0% | |
| ATTACTTAATGCTTTAGCAG+AGG | - | tig0022090:3731-3750 | Msa1396950:intron | 30.0% | |
| AAAGTTGTTAATGCAGTACA+CGG | - | tig0022090:3788-3807 | Msa1396950:intron | 30.0% | |
| ATGAAACGAAGATGTTCATT+CGG | - | tig0022090:4153-4172 | Msa1396950:intron | 30.0% | |
| TATGCTGAAAAAAAAAGGAG+AGG | - | tig0022090:4243-4262 | Msa1396950:intron | 30.0% | |
| AAAAGACTTGACAAATACTC+AGG | - | tig0022090:4366-4385 | Msa1396950:intron | 30.0% | |
| GGCAAAAAAATCAAATAGAG+TGG | - | tig0022090:4575-4594 | Msa1396950:intron | 30.0% | |
| !! | TTTAATCAGTAGCTTTAGTG+TGG | - | tig0022090:4944-4963 | Msa1396950:intron | 30.0% |
| ACAATCCAGTACTATATTCT+AGG | + | tig0022090:5036-5055 | Msa1396950:intergenic | 30.0% | |
| AAAGTTGTTACAGTAGATGA+CGG | - | tig0022090:5075-5094 | Msa1396950:intron | 30.0% | |
| TTTCTTGCAGTCAGTTATTT+CGG | + | tig0022090:5143-5162 | Msa1396950:intergenic | 30.0% | |
| TGTTAATATGGATGGAATTC+CGG | - | tig0022090:5242-5261 | Msa1396950:intron | 30.0% | |
| ATGTATCTATATTCCCATTG+TGG | + | tig0022090:5423-5442 | Msa1396950:intergenic | 30.0% | |
| TGGGAATATAGATACATCAA+AGG | - | tig0022090:5426-5445 | Msa1396950:intron | 30.0% | |
| ! | TGACTCATCTGAAATTTGTT+TGG | + | tig0022090:5628-5647 | Msa1396950:intergenic | 30.0% |
| TCTCGTTATACATCTAAACT+TGG | + | tig0022090:5666-5685 | Msa1396950:intergenic | 30.0% | |
| ACTAACAGATAAGTTTCTGT+TGG | - | tig0022090:5704-5723 | Msa1396950:intron | 30.0% | |
| AAAATGTAAGCCTGAGAATT+TGG | - | tig0022090:5833-5852 | Msa1396950:CDS | 30.0% | |
| TGGTAGCCATTTCATTTATA+AGG | - | tig0022090:5856-5875 | Msa1396950:CDS | 30.0% | |
| GAACATAACAACTTATACTG+TGG | + | tig0022090:5942-5961 | Msa1396950:intergenic | 30.0% | |
| TATCAATGCTGAATTGAAGT+TGG | - | tig0022090:5976-5995 | Msa1396950:CDS | 30.0% | |
| ATCAATGCTGAATTGAAGTT+GGG | - | tig0022090:5977-5996 | Msa1396950:CDS | 30.0% | |
| TCTCCATATATTATGCATTC+AGG | + | tig0022090:6022-6041 | Msa1396950:intergenic | 30.0% | |
| GCATAATATATGGAGATTGT+AGG | - | tig0022090:6026-6045 | Msa1396950:CDS | 30.0% | |
| ! | AATGCATATAGGCTTTGATT+AGG | - | tig0022090:6058-6077 | Msa1396950:five_prime_UTR | 30.0% |
| ! | ATGCATATAGGCTTTGATTA+GGG | - | tig0022090:6059-6078 | Msa1396950:five_prime_UTR | 30.0% |
| !! | AAGTGGATGATGATGGATTT+GGG | + | tig0022090:1628-1647 | Msa1396950:intergenic | 35.0% |
| !! | TTATTAGTCTTCCAAACTCG+AGG | + | tig0022090:1967-1986 | Msa1396950:intergenic | 35.0% |
| TATTCGAGAAAATAGCGTGT+TGG | - | tig0022090:2293-2312 | Msa1396950:CDS | 35.0% | |
| ! | GCTTCATAGCTTTTGATCAA+AGG | + | tig0022090:2354-2373 | Msa1396950:intergenic | 35.0% |
| ! | CTCTTTTGATCTATGAAGCA+CGG | + | tig0022090:2528-2547 | Msa1396950:intergenic | 35.0% |
| GCTTCATAGATCAAAAGAGT+CGG | - | tig0022090:2529-2548 | Msa1396950:intron | 35.0% | |
| ACTACCATATCACAACTAGT+GGG | + | tig0022090:2593-2612 | Msa1396950:intergenic | 35.0% | |
| TACTACCATATCACAACTAG+TGG | + | tig0022090:2594-2613 | Msa1396950:intergenic | 35.0% | |
| TATGGTAGTAGTACTCTTTG+TGG | - | tig0022090:2604-2623 | Msa1396950:intron | 35.0% | |
| AAAAAAGTCACTGTGTCCTT+TGG | - | tig0022090:2718-2737 | Msa1396950:intron | 35.0% | |
| GGTCATAGACAAATAGTGAA+GGG | + | tig0022090:2762-2781 | Msa1396950:intergenic | 35.0% | |
| AGGTCATAGACAAATAGTGA+AGG | + | tig0022090:2763-2782 | Msa1396950:intergenic | 35.0% | |
| !! | TTGTCTATGACCTAGTCTTT+TGG | - | tig0022090:2770-2789 | Msa1396950:intron | 35.0% |
| !! | TGTCTATGACCTAGTCTTTT+GGG | - | tig0022090:2771-2790 | Msa1396950:intron | 35.0% |
| GTTACGGAAAAGCTACTTAT+TGG | - | tig0022090:2851-2870 | Msa1396950:intron | 35.0% | |
| TTGTAAAATATTGGCCATGC+TGG | - | tig0022090:2901-2920 | Msa1396950:intron | 35.0% | |
| AAAATAAAACACCATGGTGC+CGG | + | tig0022090:2978-2997 | Msa1396950:intergenic | 35.0% | |
| CGCCATAAAATAAAACACCA+TGG | + | tig0022090:2984-3003 | Msa1396950:intergenic | 35.0% | |
| AATGGCAGAACATGGTAAAA+AGG | + | tig0022090:3028-3047 | Msa1396950:intergenic | 35.0% | |
| AATTCCAAAAAGCTACCACA+TGG | - | tig0022090:3101-3120 | Msa1396950:intron | 35.0% | |
| !! | ACCTTAAGCTGATTTTTCCT+TGG | - | tig0022090:3272-3291 | Msa1396950:intron | 35.0% |
| TCCAAGGAAAAATCAGCTTA+AGG | + | tig0022090:3276-3295 | Msa1396950:intergenic | 35.0% | |
| !! | CTCTAGAATACGAGAAAGAA+TGG | - | tig0022090:3447-3466 | Msa1396950:intron | 35.0% |
| AATACGAGAAAGAATGGAAG+CGG | - | tig0022090:3453-3472 | Msa1396950:intron | 35.0% | |
| ! | GCTGATTTATGTTCCTTCTT+TGG | - | tig0022090:3601-3620 | Msa1396950:intron | 35.0% |
| CTTGCATGATAAGATGTTTG+AGG | - | tig0022090:3866-3885 | Msa1396950:intron | 35.0% | |
| ! | TTTCATCAATTAGCCTGTCT+TGG | + | tig0022090:4131-4150 | Msa1396950:intergenic | 35.0% |
| TCTTAATGGTGTTCAGCTAA+GGG | + | tig0022090:4192-4211 | Msa1396950:intergenic | 35.0% | |
| TTCTTAATGGTGTTCAGCTA+AGG | + | tig0022090:4193-4212 | Msa1396950:intergenic | 35.0% | |
| !! | TAGTCTTACTGGCTTCTTAA+TGG | + | tig0022090:4206-4225 | Msa1396950:intergenic | 35.0% |
| ! | ATGGAATACAGTAGTCTTAC+TGG | + | tig0022090:4217-4236 | Msa1396950:intergenic | 35.0% |
| GTAAGACTACTGTATTCCAT+TGG | - | tig0022090:4217-4236 | Msa1396950:intron | 35.0% | |
| GGAAAGAAACCAAAACATAG+AGG | - | tig0022090:4264-4283 | Msa1396950:intron | 35.0% | |
| AAACCAAAACATAGAGGAAG+AGG | - | tig0022090:4270-4289 | Msa1396950:intron | 35.0% | |
| ! | TTTCCTCTTCCTCTATGTTT+TGG | + | tig0022090:4276-4295 | Msa1396950:intergenic | 35.0% |
| AAAACATAGAGGAAGAGGAA+AGG | - | tig0022090:4275-4294 | Msa1396950:intron | 35.0% | |
| AATGAAAACAGAGGCAGAAA+AGG | - | tig0022090:4307-4326 | Msa1396950:intron | 35.0% | |
| ATGAAAACAGAGGCAGAAAA+GGG | - | tig0022090:4308-4327 | Msa1396950:intron | 35.0% | |
| TCAAATAGAGTGGTATGGAT+AGG | - | tig0022090:4585-4604 | Msa1396950:intron | 35.0% | |
| GGAATGATTGATCGTTACAT+TGG | - | tig0022090:4631-4650 | Msa1396950:intron | 35.0% | |
| TTATTTATAGACTCGGCCTA+GGG | - | tig0022090:4669-4688 | Msa1396950:intron | 35.0% | |
| AATACTCCAACATCTTTCCT+AGG | - | tig0022090:4828-4847 | Msa1396950:intron | 35.0% | |
| TCAGACTAAATTGAACACCT+AGG | + | tig0022090:4848-4867 | Msa1396950:intergenic | 35.0% | |
| !! | AGTACTATATTCTAGGACCA+AGG | + | tig0022090:5029-5048 | Msa1396950:intergenic | 35.0% |
| TTGGTCCTAGAATATAGTAC+TGG | - | tig0022090:5028-5047 | Msa1396950:intron | 35.0% | |
| ! | GAATATAGTACTGGATTGTG+CGG | - | tig0022090:5037-5056 | Msa1396950:intron | 35.0% |
| ! | AATATAGTACTGGATTGTGC+GGG | - | tig0022090:5038-5057 | Msa1396950:intron | 35.0% |
| ! | TTAGTTCGGTGAGAAATCAT+TGG | - | tig0022090:5116-5135 | Msa1396950:intron | 35.0% |
| GAAATAACTACAGCTATGTG+AGG | - | tig0022090:5159-5178 | Msa1396950:intron | 35.0% | |
| ATTGAGACAACAGAACTACT+AGG | + | tig0022090:5330-5349 | Msa1396950:intergenic | 35.0% | |
| ! | TAGTAGTTCTGTTGTCTCAA+TGG | - | tig0022090:5329-5348 | Msa1396950:intron | 35.0% |
| AATGGTTGGAAATGTCTTCA+AGG | - | tig0022090:5347-5366 | Msa1396950:intron | 35.0% | |
| AAAAATATCCACCACCACAA+TGG | - | tig0022090:5406-5425 | Msa1396950:intron | 35.0% | |
| AAAATATCCACCACCACAAT+GGG | - | tig0022090:5407-5426 | Msa1396950:intron | 35.0% | |
| TATCTATATTCCCATTGTGG+TGG | + | tig0022090:5420-5439 | Msa1396950:intergenic | 35.0% | |
| TGATAGATACGTAAGAAAGC+AGG | - | tig0022090:5491-5510 | Msa1396950:intron | 35.0% | |
| GACAATGTTCAACGAAATTC+AGG | - | tig0022090:5513-5532 | Msa1396950:intron | 35.0% | |
| AGAAGAGACTTCAGAGTTAA+CGG | - | tig0022090:5557-5576 | Msa1396950:intron | 35.0% | |
| GGTTTCCATGCCTATTAAAT+CGG | + | tig0022090:5607-5626 | Msa1396950:intergenic | 35.0% | |
| AGATGAGTCATCTGAGTTTA+CGG | - | tig0022090:5638-5657 | Msa1396950:intron | 35.0% | |
| GATGTATAACGAGAGAAAGA+TGG | - | tig0022090:5672-5691 | Msa1396950:intron | 35.0% | |
| TTGTGTGTAACCAACATCAA+TGG | + | tig0022090:5730-5749 | Msa1396950:intergenic | 35.0% | |
| TCTACTTCAGATTCCTGAAA+TGG | - | tig0022090:5910-5929 | Msa1396950:intron | 35.0% | |
| !! | CTTCAATTCAGCATTGATAC+TGG | + | tig0022090:5975-5994 | Msa1396950:intergenic | 35.0% |
| TGAATTGAAGTTGGGTACTT+TGG | - | tig0022090:5985-6004 | Msa1396950:CDS | 35.0% | |
| ! | GGGTGATTTTCAATGCATAT+AGG | - | tig0022090:6047-6066 | Msa1396950:five_prime_UTR | 35.0% |
| GAAGTTCTGTGTTATACTGT+TGG | - | tig0022090:6091-6110 | Msa1396950:five_prime_UTR | 35.0% | |
| !! | GAAGTGGATGATGATGGATT+TGG | + | tig0022090:1629-1648 | Msa1396950:intergenic | 40.0% |
| !! | AGTGAAAGCATTACTGCTTG+TGG | + | tig0022090:1754-1773 | Msa1396950:intergenic | 40.0% |
| ! | AAGGTATTTGCTGCTGCAAA+AGG | - | tig0022090:1925-1944 | Msa1396950:three_prime_UTR | 40.0% |
| TTCCAAACTCGAGGATATCT+TGG | + | tig0022090:1958-1977 | Msa1396950:intergenic | 40.0% | |
| AAACGAATATAGCGAACGCA+AGG | + | tig0022090:2043-2062 | Msa1396950:intergenic | 40.0% | |
| TGACACTAATACATCGACAC+TGG | - | tig0022090:2266-2285 | Msa1396950:CDS | 40.0% | |
| ! | AGAAAATAGCGTGTTGGTGT+AGG | - | tig0022090:2299-2318 | Msa1396950:CDS | 40.0% |
| TATGAAGCACAGACACTTCT+CGG | - | tig0022090:2366-2385 | Msa1396950:CDS | 40.0% | |
| ACGGATATAGACATGGACAT+CGG | + | tig0022090:2509-2528 | Msa1396950:intergenic | 40.0% | |
| ATGAAGCACGGATATAGACA+TGG | + | tig0022090:2516-2535 | Msa1396950:intergenic | 40.0% | |
| GTTTCCCACTAGTTGTGATA+TGG | - | tig0022090:2586-2605 | Msa1396950:intron | 40.0% | |
| !! | GTCTATGACCTAGTCTTTTG+GGG | - | tig0022090:2772-2791 | Msa1396950:intron | 40.0% |
| !! | TGGTGTTTTTGTTGAGGGTT+TGG | - | tig0022090:2828-2847 | Msa1396950:intron | 40.0% |
| !! | GGTGTTTTTGTTGAGGGTTT+GGG | - | tig0022090:2829-2848 | Msa1396950:intron | 40.0% |
| ! | TTTGTTGAGGGTTTGGGTTA+CGG | - | tig0022090:2835-2854 | Msa1396950:intron | 40.0% |
| GAGAAATTTGTGAAGGATGC+CGG | - | tig0022090:2956-2975 | Msa1396950:intron | 40.0% | |
| TTTATGGCGGTTCAAAATGG+TGG | - | tig0022090:2995-3014 | Msa1396950:intron | 40.0% | |
| ! | ATAGCGTTGTCGATTGCAAA+TGG | + | tig0022090:3046-3065 | Msa1396950:intergenic | 40.0% |
| !!! | TGGTAGCTTTTTGGAATTCG+TGG | + | tig0022090:3099-3118 | Msa1396950:intergenic | 40.0% |
| TGATAGAGTAAAATCCGTCG+TGG | - | tig0022090:3131-3150 | Msa1396950:intron | 40.0% | |
| CCAGAATTGCAAATCATCCA+AGG | + | tig0022090:3292-3311 | Msa1396950:intergenic | 40.0% | |
| ! | CCTTGGATGATTTGCAATTC+TGG | - | tig0022090:3289-3308 | Msa1396950:intron | 40.0% |
| ! | TCTTGATACCTATGTCGCTT+GGG | - | tig0022090:3382-3401 | Msa1396950:intron | 40.0% |
| AGAATGGAAGCGGATAATAC+AGG | - | tig0022090:3463-3482 | Msa1396950:intron | 40.0% | |
| AAGGGTCAAGGAAAGACAAT+GGG | - | tig0022090:3696-3715 | Msa1396950:intron | 40.0% | |
| ! | TTCAGCTAAGGGCTATTTCA+GGG | + | tig0022090:4181-4200 | Msa1396950:intergenic | 40.0% |
| GATAGGATATGAGCGAACAA+AGG | - | tig0022090:4335-4354 | Msa1396950:intron | 40.0% | |
| ! | CTTTTCTGTGCAGATGTAAG+TGG | - | tig0022090:4554-4573 | Msa1396950:intron | 40.0% |
| ATAGAGTGGTATGGATAGGA+AGG | - | tig0022090:4589-4608 | Msa1396950:intron | 40.0% | |
| TATGGATAGGAAGGATTCTG+AGG | - | tig0022090:4598-4617 | Msa1396950:intron | 40.0% | |
| ! | GGATTCTGAGGAATCTGTAA+TGG | - | tig0022090:4610-4629 | Msa1396950:intron | 40.0% |
| GTTATTTATAGACTCGGCCT+AGG | - | tig0022090:4668-4687 | Msa1396950:intron | 40.0% | |
| TATTTATAGACTCGGCCTAG+GGG | - | tig0022090:4670-4689 | Msa1396950:intron | 40.0% | |
| CTAACAATTAAGTCACCCCT+AGG | + | tig0022090:4688-4707 | Msa1396950:intergenic | 40.0% | |
| TGAACACCTAGGAAAGATGT+TGG | + | tig0022090:4837-4856 | Msa1396950:intergenic | 40.0% | |
| CATGTAGGTATTTGCAGACA+TGG | - | tig0022090:5287-5306 | Msa1396950:intron | 40.0% | |
| AGTTCTGTTGTCTCAATGGT+TGG | - | tig0022090:5333-5352 | Msa1396950:intron | 40.0% | |
| ! | AAGGAAAGCGTGTAAGAATC+AGG | - | tig0022090:5445-5464 | Msa1396950:intron | 40.0% |
| ! | AGGAAAGCGTGTAAGAATCA+GGG | - | tig0022090:5446-5465 | Msa1396950:intron | 40.0% |
| ACGAAATTCAGGCTTAAGAG+AGG | - | tig0022090:5524-5543 | Msa1396950:intron | 40.0% | |
| !! | GAACAGGATGCCGATTTAAT+AGG | - | tig0022090:5594-5613 | Msa1396950:intron | 40.0% |
| TTTCTGTTGGCCATTGATGT+TGG | - | tig0022090:5717-5736 | Msa1396950:intron | 40.0% | |
| ATGTAAGCCTGAGAATTTGG+TGG | - | tig0022090:5836-5855 | Msa1396950:CDS | 40.0% | |
| !! | ATGTAAGGTTGGTGTGGAAG+TGG | + | tig0022090:1645-1664 | Msa1396950:intergenic | 45.0% |
| ! | ACTTGCTGCTGATGTAAGGT+TGG | + | tig0022090:1656-1675 | Msa1396950:intergenic | 45.0% |
| !! | TTCGACTTGCTGCTGATGTA+AGG | + | tig0022090:1660-1679 | Msa1396950:intergenic | 45.0% |
| !! | GAAAGCATTACTGCTTGTGG+CGG | + | tig0022090:1751-1770 | Msa1396950:intergenic | 45.0% |
| ACTCGAGGATATCTTGGTCT+TGG | + | tig0022090:1952-1971 | Msa1396950:intergenic | 45.0% | |
| GACCAAGATATCCTCGAGTT+TGG | - | tig0022090:1953-1972 | Msa1396950:three_prime_UTR | 45.0% | |
| !! | TATATGTGTCGGTGTCATGC+CGG | + | tig0022090:2433-2452 | Msa1396950:intergenic | 45.0% |
| TGTCGATAGCGAATGACAGA+TGG | - | tig0022090:2678-2697 | Msa1396950:intron | 45.0% | |
| !! | TATGACCTAGTCTTTTGGGG+TGG | - | tig0022090:2775-2794 | Msa1396950:intron | 45.0% |
| CGGAAAAGCTACTTATTGGC+TGG | - | tig0022090:2855-2874 | Msa1396950:intron | 45.0% | |
| CCTTCACAAATTTCTCACGC+TGG | + | tig0022090:2952-2971 | Msa1396950:intergenic | 45.0% | |
| CCAGCGTGAGAAATTTGTGA+AGG | - | tig0022090:2949-2968 | Msa1396950:intron | 45.0% | |
| CGATTGCAAATGGCAGAACA+TGG | + | tig0022090:3036-3055 | Msa1396950:intergenic | 45.0% | |
| ! | CTGACCATGTGGTAGCTTTT+TGG | + | tig0022090:3108-3127 | Msa1396950:intergenic | 45.0% |
| CTCTATCAACACTGACCATG+TGG | + | tig0022090:3119-3138 | Msa1396950:intergenic | 45.0% | |
| GTAAAATCCGTCGTGGATGT+CGG | - | tig0022090:3138-3157 | Msa1396950:intron | 45.0% | |
| CAATGTTATGAGTTCCACGC+CGG | - | tig0022090:3176-3195 | Msa1396950:intron | 45.0% | |
| ! | AAAGACTAGCCACTAAGAGC+CGG | + | tig0022090:3198-3217 | Msa1396950:intergenic | 45.0% |
| CTCTTGATACCTATGTCGCT+TGG | - | tig0022090:3381-3400 | Msa1396950:intron | 45.0% | |
| !! | TTCTAGTTCCCAAGCGACAT+AGG | + | tig0022090:3393-3412 | Msa1396950:intergenic | 45.0% |
| !! | GCTCTGAAGCTATCCAAAGA+AGG | + | tig0022090:3617-3636 | Msa1396950:intergenic | 45.0% |
| TGGATGTTAAGCAAGGGTCA+AGG | - | tig0022090:3684-3703 | Msa1396950:intron | 45.0% | |
| CAAGGGTCAAGGAAAGACAA+TGG | - | tig0022090:3695-3714 | Msa1396950:intron | 45.0% | |
| TTGACGAAGCAGAAGAGCTT+TGG | - | tig0022090:3763-3782 | Msa1396950:intron | 45.0% | |
| CAGTGCTACATAACCAAGAC+AGG | - | tig0022090:4115-4134 | Msa1396950:intron | 45.0% | |
| ! | TCAGCTAAGGGCTATTTCAG+GGG | + | tig0022090:4180-4199 | Msa1396950:intergenic | 45.0% |
| ! | GTTCAGCTAAGGGCTATTTC+AGG | + | tig0022090:4182-4201 | Msa1396950:intergenic | 45.0% |
| AACAGAGGCAGAAAAGGGAT+AGG | - | tig0022090:4313-4332 | Msa1396950:intron | 45.0% | |
| AGGCAGAAAAGGGATAGGAT+AGG | - | tig0022090:4318-4337 | Msa1396950:intron | 45.0% | |
| TGCTGCAGATTTCCTGGAAA+TGG | - | tig0022090:4391-4410 | Msa1396950:CDS | 45.0% | |
| TCACGTCTTACTCCATTTCC+AGG | + | tig0022090:4406-4425 | Msa1396950:intergenic | 45.0% | |
| GAAATGGAGTAAGACGTGAG+TGG | - | tig0022090:4407-4426 | Msa1396950:CDS | 45.0% | |
| ! | CAAACACCGAGTTTTTCTCG+AGG | - | tig0022090:4874-4893 | Msa1396950:intron | 45.0% |
| GGACTTCCTCGAGAAAAACT+CGG | + | tig0022090:4883-4902 | Msa1396950:intergenic | 45.0% | |
| TCCAAACCAAGGAGAGGATA+GGG | - | tig0022090:4900-4919 | Msa1396950:intron | 45.0% | |
| AAGGAGAGGATAGGGGTTTA+GGG | - | tig0022090:4908-4927 | Msa1396950:intron | 45.0% | |
| TAAACATACGGCTCTGTCCT+TGG | - | tig0022090:5009-5028 | Msa1396950:intron | 45.0% | |
| GTAGGTATTTGCAGACATGG+AGG | - | tig0022090:5290-5309 | Msa1396950:intron | 45.0% | |
| GGAAATGTCTTCAAGGAGCT+AGG | - | tig0022090:5354-5373 | Msa1396950:intron | 45.0% | |
| CTTCAAGGAGCTAGGTATGA+TGG | - | tig0022090:5362-5381 | Msa1396950:intron | 45.0% | |
| CTATATTCCCATTGTGGTGG+TGG | + | tig0022090:5417-5436 | Msa1396950:intergenic | 45.0% | |
| GGACGATGAACAATTCGAAC+AGG | - | tig0022090:5578-5597 | Msa1396950:intron | 45.0% | |
| !! | GGATGCCGATTTAATAGGCA+TGG | - | tig0022090:5599-5618 | Msa1396950:intron | 45.0% |
| CTTACCTCGTAACAGCATGT+AGG | + | tig0022090:5776-5795 | Msa1396950:intergenic | 45.0% | |
| CTACATGCTGTTACGAGGTA+AGG | - | tig0022090:5774-5793 | Msa1396950:intron | 45.0% | |
| CGAGGTAAGGTGAAGACATT+AGG | - | tig0022090:5787-5806 | Msa1396950:intron | 45.0% | |
| ATGGCTACCACCAAATTCTC+AGG | + | tig0022090:5846-5865 | Msa1396950:intergenic | 45.0% | |
| !!! | ATTTTTATGATTTTATTATA+AGG | - | tig0022090:1906-1925 | Msa1396950:three_prime_UTR | 5.0% |
| GGTGTGGAAGTGGATGATGA+TGG | + | tig0022090:1635-1654 | Msa1396950:intergenic | 50.0% | |
| !! | CTGCTGATGTAAGGTTGGTG+TGG | + | tig0022090:1651-1670 | Msa1396950:intergenic | 50.0% |
| !! | TTACGGCCAGGTTTGGGTTT+TGG | + | tig0022090:1701-1720 | Msa1396950:intergenic | 50.0% |
| CGAGATTTACGGCCAGGTTT+GGG | + | tig0022090:1707-1726 | Msa1396950:intergenic | 50.0% | |
| CCAAACCTGGCCGTAAATCT+CGG | - | tig0022090:1705-1724 | Msa1396950:three_prime_UTR | 50.0% | |
| CAAACCTGGCCGTAAATCTC+GGG | - | tig0022090:1706-1725 | Msa1396950:three_prime_UTR | 50.0% | |
| CTAACTCCGCCCGAGATTTA+CGG | + | tig0022090:1718-1737 | Msa1396950:intergenic | 50.0% | |
| TGGGTACATGTGTCGAACAC+CGG | - | tig0022090:2182-2201 | Msa1396950:CDS | 50.0% | |
| ACACGGCATGTGTTCGACAT+CGG | + | tig0022090:2404-2423 | Msa1396950:intergenic | 50.0% | |
| AAGTCACTGTGTCCTTTGGC+AGG | - | tig0022090:2722-2741 | Msa1396950:intron | 50.0% | |
| AGTCACTGTGTCCTTTGGCA+GGG | - | tig0022090:2723-2742 | Msa1396950:intron | 50.0% | |
| AGAGACCACCCCAAAAGACT+AGG | + | tig0022090:2783-2802 | Msa1396950:intergenic | 50.0% | |
| ! | TTTGGGGTGGTCTCTTTCCA+CGG | - | tig0022090:2788-2807 | Msa1396950:intron | 50.0% |
| TTAAGAGCCGACATCCACGA+CGG | + | tig0022090:3148-3167 | Msa1396950:intergenic | 50.0% | |
| !! | GTGGATGTCGGCTCTTAAAG+AGG | - | tig0022090:3150-3169 | Msa1396950:intron | 50.0% |
| !! | GATGTCGGCTCTTAAAGAGG+TGG | - | tig0022090:3153-3172 | Msa1396950:intron | 50.0% |
| GCTCTTCTGCTTCGTCAACT+CGG | + | tig0022090:3761-3780 | Msa1396950:intergenic | 50.0% | |
| CAGGATTGCTGCAGATTTCC+TGG | - | tig0022090:4385-4404 | Msa1396950:CDS | 50.0% | |
| GGAGTAAGACGTGAGTGGAA+TGG | - | tig0022090:4412-4431 | Msa1396950:CDS | 50.0% | |
| GTAAGACGTGAGTGGAATGG+AGG | - | tig0022090:4415-4434 | Msa1396950:CDS | 50.0% | |
| TCTCGAGGAAGTCCAAACCA+AGG | - | tig0022090:4889-4908 | Msa1396950:intron | 50.0% | |
| AGGAAGTCCAAACCAAGGAG+AGG | - | tig0022090:4894-4913 | Msa1396950:intron | 50.0% | |
| GTCCAAACCAAGGAGAGGAT+AGG | - | tig0022090:4899-4918 | Msa1396950:intron | 50.0% | |
| CCAAACCAAGGAGAGGATAG+GGG | - | tig0022090:4901-4920 | Msa1396950:intron | 50.0% | |
| CTAAACCCCTATCCTCTCCT+TGG | + | tig0022090:4909-4928 | Msa1396950:intergenic | 50.0% | |
| CAAGGAGAGGATAGGGGTTT+AGG | - | tig0022090:4907-4926 | Msa1396950:intron | 50.0% | |
| CGTGTAAGAATCAGGGTGCA+AGG | - | tig0022090:5453-5472 | Msa1396950:intron | 50.0% | |
| GACTCCTACATGCTGTTACG+AGG | - | tig0022090:5769-5788 | Msa1396950:intron | 50.0% | |
| ACTGTGGACTTCGCCATTTC+AGG | + | tig0022090:5926-5945 | Msa1396950:intergenic | 50.0% | |
| CCGAGATTTACGGCCAGGTT+TGG | + | tig0022090:1708-1727 | Msa1396950:intergenic | 55.0% | |
| AGCATTACTGCTTGTGGCGG+TGG | + | tig0022090:1748-1767 | Msa1396950:intergenic | 55.0% | |
| ACACATGCCGTGTCCAACAC+CGG | - | tig0022090:2411-2430 | Msa1396950:CDS | 55.0% | |
| ! | TGTCATGCCGGTGTTGGACA+CGG | + | tig0022090:2421-2440 | Msa1396950:intergenic | 55.0% |
| CATGGACATCGGACACGACA+CGG | + | tig0022090:2498-2517 | Msa1396950:intergenic | 55.0% | |
| TAGTGAAGGGATGTCCGCCA+TGG | + | tig0022090:2749-2768 | Msa1396950:intergenic | 55.0% | |
| TTGGGGTGGTCTCTTTCCAC+GGG | - | tig0022090:2789-2808 | Msa1396950:intron | 55.0% | |
| TCCAACACTGCGATCCAGCA+TGG | + | tig0022090:2918-2937 | Msa1396950:intergenic | 55.0% | |
| CCCCTATCCTCTCCTTGGTT+TGG | + | tig0022090:4904-4923 | Msa1396950:intergenic | 55.0% | |
| GAGAGGATAGGGGTTTAGGG+AGG | - | tig0022090:4911-4930 | Msa1396950:intron | 55.0% | |
| TGCCCGCCAAAACCCAAACC+TGG | - | tig0022090:1692-1711 | Msa1396950:three_prime_UTR | 60.0% | |
| !! | GGCCAGGTTTGGGTTTTGGC+GGG | + | tig0022090:1697-1716 | Msa1396950:intergenic | 60.0% |
| !! | CGGCCAGGTTTGGGTTTTGG+CGG | + | tig0022090:1698-1717 | Msa1396950:intergenic | 60.0% |
| ACCTGGCCGTAAATCTCGGG+CGG | - | tig0022090:1709-1728 | Msa1396950:three_prime_UTR | 60.0% | |
| !! | TGTCGGTGTCATGCCGGTGT+TGG | + | tig0022090:2427-2446 | Msa1396950:intergenic | 60.0% |
| TGTGTCCTTTGGCAGGGCCA+TGG | - | tig0022090:2729-2748 | Msa1396950:intron | 60.0% | |
| GCCATGCTGGATCGCAGTGT+TGG | - | tig0022090:2914-2933 | Msa1396950:intron | 60.0% | |
| TGTGAAGGATGCCGGCACCA+TGG | - | tig0022090:2964-2983 | Msa1396950:intron | 60.0% | |
| !! | AGTTCCACGCCGGCTCTTAG+TGG | - | tig0022090:3186-3205 | Msa1396950:intron | 60.0% |
| TCCGCCCGAGATTTACGGCC+AGG | + | tig0022090:1713-1732 | Msa1396950:intergenic | 65.0% | |
| CTGCTTGTGGCGGTGGCTGA+TGG | + | tig0022090:1741-1760 | Msa1396950:intergenic | 65.0% | |
| GTCCTTTGGCAGGGCCATGG+CGG | - | tig0022090:2732-2751 | Msa1396950:intron | 65.0% | |
| CTAGCCACTAAGAGCCGGCG+TGG | + | tig0022090:3193-3212 | Msa1396950:intergenic | 65.0% | |
| GTCCGCCATGGCCCTGCCAA+AGG | + | tig0022090:2737-2756 | Msa1396950:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022090 | gene | 1590 | 6218 | 1590 | ID=Msa1396950;Name=Msa1396950 |
| tig0022090 | mRNA | 1590 | 6218 | 1590 | ID=Msa1396950-mRNA-1;Parent=Msa1396950;Name=Msa1396950-mRNA-1;_AED=0.11;_eAED=0.11;_QI=173|0.5|0.6|1|0.5|0.6|5|538|289 |
| tig0022090 | exon | 1590 | 2514 | 1590 | ID=Msa1396950-mRNA-1:exon:15784;Parent=Msa1396950-mRNA-1 |
| tig0022090 | exon | 3921 | 4133 | 3921 | ID=Msa1396950-mRNA-1:exon:15783;Parent=Msa1396950-mRNA-1 |
| tig0022090 | exon | 4372 | 4467 | 4372 | ID=Msa1396950-mRNA-1:exon:15782;Parent=Msa1396950-mRNA-1 |
| tig0022090 | exon | 5788 | 5880 | 5788 | ID=Msa1396950-mRNA-1:exon:15781;Parent=Msa1396950-mRNA-1 |
| tig0022090 | exon | 5965 | 6218 | 5965 | ID=Msa1396950-mRNA-1:exon:15780;Parent=Msa1396950-mRNA-1 |
| tig0022090 | five_prime_UTR | 6046 | 6218 | 6046 | ID=Msa1396950-mRNA-1:five_prime_utr;Parent=Msa1396950-mRNA-1 |
| tig0022090 | CDS | 5965 | 6045 | 5965 | ID=Msa1396950-mRNA-1:cds;Parent=Msa1396950-mRNA-1 |
| tig0022090 | CDS | 5788 | 5880 | 5788 | ID=Msa1396950-mRNA-1:cds;Parent=Msa1396950-mRNA-1 |
| tig0022090 | CDS | 4372 | 4467 | 4372 | ID=Msa1396950-mRNA-1:cds;Parent=Msa1396950-mRNA-1 |
| tig0022090 | CDS | 3921 | 4133 | 3921 | ID=Msa1396950-mRNA-1:cds;Parent=Msa1396950-mRNA-1 |
| tig0022090 | CDS | 2128 | 2514 | 2128 | ID=Msa1396950-mRNA-1:cds;Parent=Msa1396950-mRNA-1 |
| tig0022090 | three_prime_UTR | 1590 | 2127 | 1590 | ID=Msa1396950-mRNA-1:three_prime_utr;Parent=Msa1396950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
