Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0983880 | XP_013452335.1 | 88.961 | 308 | 11 | 3 | 1 | 289 | 51 | 354 | 0.0 | 521 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0983880 | sp|Q8LG95|PP332_ARATH | 65.158 | 221 | 58 | 2 | 20 | 221 | 23 | 243 | 5.23e-101 | 300 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0983880 | A0A072UBE9 | 88.961 | 308 | 11 | 3 | 1 | 289 | 51 | 354 | 0.0 | 521 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001950 | Msa0983880 | 0.803253 | 3.806830e-49 | -8.615850e-47 |
Msa0003470 | Msa0983880 | 0.861685 | 8.624274e-64 | -8.615850e-47 |
Msa0007450 | Msa0983880 | 0.811741 | 6.015696e-51 | -8.615850e-47 |
Msa0008850 | Msa0983880 | 0.801899 | 7.243502e-49 | -8.615850e-47 |
Msa0017120 | Msa0983880 | 0.808633 | 2.813722e-50 | -8.615850e-47 |
Msa0024680 | Msa0983880 | 0.818548 | 1.850639e-52 | -8.615850e-47 |
Msa0027540 | Msa0983880 | 0.814227 | 1.714809e-51 | -8.615850e-47 |
Msa0030310 | Msa0983880 | 0.837891 | 3.976621e-57 | -8.615850e-47 |
Msa0030380 | Msa0983880 | 0.812448 | 4.217432e-51 | -8.615850e-47 |
Msa0044710 | Msa0983880 | 0.804810 | 1.806859e-49 | -8.615850e-47 |
Msa0047470 | Msa0983880 | 0.808412 | 3.136928e-50 | -8.615850e-47 |
Msa0050430 | Msa0983880 | 0.818633 | 1.769977e-52 | -8.615850e-47 |
Msa0050720 | Msa0983880 | 0.808549 | 2.932663e-50 | -8.615850e-47 |
Msa0065390 | Msa0983880 | 0.800471 | 1.419278e-48 | -8.615850e-47 |
Msa0075310 | Msa0983880 | 0.808929 | 2.432317e-50 | -8.615850e-47 |
Msa0079250 | Msa0983880 | 0.810165 | 1.319810e-50 | -8.615850e-47 |
Msa0083160 | Msa0983880 | 0.804092 | 2.549518e-49 | -8.615850e-47 |
Msa0084680 | Msa0983880 | 0.802202 | 6.273113e-49 | -8.615850e-47 |
Msa0091480 | Msa0983880 | 0.800901 | 1.159409e-48 | -8.615850e-47 |
Msa0095380 | Msa0983880 | 0.818189 | 2.231719e-52 | -8.615850e-47 |
Msa0101060 | Msa0983880 | 0.808264 | 3.373493e-50 | -8.615850e-47 |
Msa0120330 | Msa0983880 | 0.817831 | 2.688445e-52 | -8.615850e-47 |
Msa0605620 | Msa0983880 | 0.805799 | 1.121061e-49 | -8.615850e-47 |
Msa0607200 | Msa0983880 | 0.811200 | 7.883687e-51 | -8.615850e-47 |
Msa0607280 | Msa0983880 | 0.806523 | 7.892315e-50 | -8.615850e-47 |
Msa0614230 | Msa0983880 | 0.824621 | 7.309202e-54 | -8.615850e-47 |
Msa0618010 | Msa0983880 | 0.810615 | 1.055641e-50 | -8.615850e-47 |
Msa0638280 | Msa0983880 | 0.805233 | 1.473595e-49 | -8.615850e-47 |
Msa0638320 | Msa0983880 | 0.812442 | 4.230382e-51 | -8.615850e-47 |
Msa0642650 | Msa0983880 | 0.851079 | 1.121187e-60 | -8.615850e-47 |
Msa0657670 | Msa0983880 | 0.815593 | 8.538377e-52 | -8.615850e-47 |
Msa0667220 | Msa0983880 | 0.807459 | 5.003424e-50 | -8.615850e-47 |
Msa0669850 | Msa0983880 | 0.830870 | 2.301846e-55 | -8.615850e-47 |
Msa0677270 | Msa0983880 | 0.811210 | 7.846280e-51 | -8.615850e-47 |
Msa0681890 | Msa0983880 | 0.824503 | 7.793478e-54 | -8.615850e-47 |
Msa0682400 | Msa0983880 | 0.806485 | 8.039004e-50 | -8.615850e-47 |
Msa0686610 | Msa0983880 | 0.801029 | 1.091898e-48 | -8.615850e-47 |
Msa0703590 | Msa0983880 | 0.820434 | 6.872917e-53 | -8.615850e-47 |
Msa0703720 | Msa0983880 | 0.815054 | 1.124968e-51 | -8.615850e-47 |
Msa0707780 | Msa0983880 | 0.802985 | 4.325756e-49 | -8.615850e-47 |
Msa0709080 | Msa0983880 | 0.800320 | 1.523080e-48 | -8.615850e-47 |
Msa0709190 | Msa0983880 | 0.823751 | 1.169946e-53 | -8.615850e-47 |
Msa0709480 | Msa0983880 | 0.807832 | 4.167858e-50 | -8.615850e-47 |
Msa0717510 | Msa0983880 | 0.815517 | 8.876447e-52 | -8.615850e-47 |
Msa0720270 | Msa0983880 | 0.806664 | 7.369685e-50 | -8.615850e-47 |
Msa0730180 | Msa0983880 | 0.820843 | 5.536132e-53 | -8.615850e-47 |
Msa0733000 | Msa0983880 | 0.810838 | 9.445068e-51 | -8.615850e-47 |
Msa0760890 | Msa0983880 | 0.800160 | 1.642043e-48 | -8.615850e-47 |
Msa0763880 | Msa0983880 | 0.811663 | 6.256352e-51 | -8.615850e-47 |
Msa0763910 | Msa0983880 | 0.810523 | 1.104800e-50 | -8.615850e-47 |
Msa0770430 | Msa0983880 | 0.804806 | 1.809797e-49 | -8.615850e-47 |
Msa0775260 | Msa0983880 | 0.813579 | 2.382759e-51 | -8.615850e-47 |
Msa0787720 | Msa0983880 | 0.806807 | 6.874106e-50 | -8.615850e-47 |
Msa0789270 | Msa0983880 | 0.809897 | 1.507707e-50 | -8.615850e-47 |
Msa0789280 | Msa0983880 | 0.806077 | 9.800979e-50 | -8.615850e-47 |
Msa0789290 | Msa0983880 | 0.801090 | 1.060825e-48 | -8.615850e-47 |
Msa0790830 | Msa0983880 | 0.812847 | 3.449379e-51 | -8.615850e-47 |
Msa0812660 | Msa0983880 | 0.820677 | 6.045949e-53 | -8.615850e-47 |
Msa0132180 | Msa0983880 | 0.819493 | 1.128495e-52 | -8.615850e-47 |
Msa0135980 | Msa0983880 | 0.816867 | 4.432731e-52 | -8.615850e-47 |
Msa0140220 | Msa0983880 | 0.812656 | 3.798884e-51 | -8.615850e-47 |
Msa0141830 | Msa0983880 | 0.801921 | 7.168426e-49 | -8.615850e-47 |
Msa0143080 | Msa0983880 | 0.820283 | 7.442981e-53 | -8.615850e-47 |
Msa0145950 | Msa0983880 | 0.824550 | 7.594860e-54 | -8.615850e-47 |
Msa0146470 | Msa0983880 | 0.855137 | 7.719292e-62 | -8.615850e-47 |
Msa0149500 | Msa0983880 | 0.814716 | 1.337408e-51 | -8.615850e-47 |
Msa0162030 | Msa0983880 | 0.830520 | 2.803539e-55 | -8.615850e-47 |
Msa0168100 | Msa0983880 | 0.821309 | 4.323894e-53 | -8.615850e-47 |
Msa0169620 | Msa0983880 | 0.818352 | 2.050168e-52 | -8.615850e-47 |
Msa0172350 | Msa0983880 | 0.804599 | 1.999671e-49 | -8.615850e-47 |
Msa0173740 | Msa0983880 | 0.809055 | 2.285861e-50 | -8.615850e-47 |
Msa0173820 | Msa0983880 | 0.817493 | 3.204329e-52 | -8.615850e-47 |
Msa0173830 | Msa0983880 | 0.800069 | 1.713594e-48 | -8.615850e-47 |
Msa0182930 | Msa0983880 | 0.833309 | 5.742953e-56 | -8.615850e-47 |
Msa0183620 | Msa0983880 | 0.826182 | 3.120991e-54 | -8.615850e-47 |
Msa0185390 | Msa0983880 | 0.823975 | 1.037100e-53 | -8.615850e-47 |
Msa0194970 | Msa0983880 | 0.831225 | 1.883291e-55 | -8.615850e-47 |
Msa0207000 | Msa0983880 | 0.824106 | 9.661988e-54 | -8.615850e-47 |
Msa0208630 | Msa0983880 | 0.817992 | 2.473536e-52 | -8.615850e-47 |
Msa0223290 | Msa0983880 | 0.803012 | 4.270412e-49 | -8.615850e-47 |
Msa0224730 | Msa0983880 | 0.807978 | 3.880346e-50 | -8.615850e-47 |
Msa0236980 | Msa0983880 | 0.819056 | 1.419237e-52 | -8.615850e-47 |
Msa0376510 | Msa0983880 | 0.805039 | 1.618253e-49 | -8.615850e-47 |
Msa0411520 | Msa0983880 | 0.809656 | 1.698837e-50 | -8.615850e-47 |
Msa0417630 | Msa0983880 | 0.800932 | 1.142690e-48 | -8.615850e-47 |
Msa0421800 | Msa0983880 | 0.802068 | 6.685460e-49 | -8.615850e-47 |
Msa0431520 | Msa0983880 | 0.809195 | 2.133662e-50 | -8.615850e-47 |
Msa0431830 | Msa0983880 | 0.825921 | 3.600345e-54 | -8.615850e-47 |
Msa0442880 | Msa0983880 | 0.803852 | 2.860916e-49 | -8.615850e-47 |
Msa0448080 | Msa0983880 | 0.803560 | 3.289179e-49 | -8.615850e-47 |
Msa0469910 | Msa0983880 | -0.822102 | 2.834608e-53 | -8.615850e-47 |
Msa0482680 | Msa0983880 | 0.803773 | 2.970428e-49 | -8.615850e-47 |
Msa0983880 | Msa0990520 | 0.833013 | 6.803955e-56 | -8.615850e-47 |
Msa0983880 | Msa1002040 | 0.815005 | 1.153430e-51 | -8.615850e-47 |
Msa0983880 | Msa1015060 | 0.828018 | 1.135191e-54 | -8.615850e-47 |
Msa0983880 | Msa1038320 | 0.810760 | 9.819358e-51 | -8.615850e-47 |
Msa0983880 | Msa1044340 | 0.802797 | 4.731381e-49 | -8.615850e-47 |
Msa0983880 | Msa1049410 | 0.805981 | 1.026598e-49 | -8.615850e-47 |
Msa0983880 | Msa1051680 | 0.817967 | 2.504771e-52 | -8.615850e-47 |
Msa0983880 | Msa1097380 | 0.839068 | 1.976825e-57 | -8.615850e-47 |
Msa0983880 | Msa1112610 | 0.802289 | 6.021982e-49 | -8.615850e-47 |
Msa0983880 | Msa1125780 | 0.820262 | 7.528603e-53 | -8.615850e-47 |
Msa0983880 | Msa1125950 | 0.822696 | 2.063194e-53 | -8.615850e-47 |
Msa0983880 | Msa1132520 | 0.819782 | 9.694951e-53 | -8.615850e-47 |
Msa0983880 | Msa1135690 | 0.811780 | 5.899078e-51 | -8.615850e-47 |
Msa0983880 | Msa1149760 | 0.810702 | 1.010935e-50 | -8.615850e-47 |
Msa0983880 | Msa1159100 | 0.820069 | 8.332975e-53 | -8.615850e-47 |
Msa0983880 | Msa1171340 | 0.827171 | 1.813190e-54 | -8.615850e-47 |
Msa0983880 | Msa1183390 | 0.802411 | 5.683341e-49 | -8.615850e-47 |
Msa0983880 | Msa1197110 | 0.802490 | 5.473937e-49 | -8.615850e-47 |
Msa0983880 | Msa1200920 | 0.816176 | 6.328862e-52 | -8.615850e-47 |
Msa0983880 | Msa1206020 | 0.809576 | 1.767393e-50 | -8.615850e-47 |
Msa0983880 | Msa1210770 | 0.817770 | 2.774853e-52 | -8.615850e-47 |
Msa0983880 | Msa1220450 | -0.812221 | 4.727311e-51 | -8.615850e-47 |
Msa0983880 | Msa1220460 | -0.809103 | 2.232556e-50 | -8.615850e-47 |
Msa0983880 | Msa1220480 | -0.808680 | 2.749277e-50 | -8.615850e-47 |
Msa0983880 | Msa1223840 | 0.803116 | 4.063490e-49 | -8.615850e-47 |
Msa0983880 | Msa1224670 | 0.820438 | 6.860030e-53 | -8.615850e-47 |
Msa0983880 | Msa1237030 | 0.818646 | 1.758771e-52 | -8.615850e-47 |
Msa0983880 | Msa1249870 | 0.813083 | 3.062260e-51 | -8.615850e-47 |
Msa0983880 | Msa1250670 | 0.819427 | 1.168172e-52 | -8.615850e-47 |
Msa0983880 | Msa1265960 | 0.822966 | 1.785099e-53 | -8.615850e-47 |
Msa0983880 | Msa1271510 | 0.801906 | 7.218420e-49 | -8.615850e-47 |
Msa0983880 | Msa1316170 | 0.807086 | 6.002347e-50 | -8.615850e-47 |
Msa0983880 | Msa1328850 | 0.814281 | 1.668981e-51 | -8.615850e-47 |
Msa0983880 | Msa1337090 | 0.821976 | 3.032012e-53 | -8.615850e-47 |
Msa0983880 | Msa1352290 | 0.821857 | 3.230783e-53 | -8.615850e-47 |
Msa0983880 | Msa1354040 | 0.814087 | 1.841335e-51 | -8.615850e-47 |
Msa0983880 | Msa1367600 | 0.800974 | 1.120438e-48 | -8.615850e-47 |
Msa0983880 | Msa1367940 | 0.808567 | 2.907051e-50 | -8.615850e-47 |
Msa0983880 | Msa1373510 | 0.801549 | 8.543576e-49 | -8.615850e-47 |
Msa0983880 | Msa1381130 | 0.828413 | 9.115224e-55 | -8.615850e-47 |
Msa0983880 | Msa1390310 | 0.805600 | 1.234264e-49 | -8.615850e-47 |
Msa0983880 | Msa1396950 | 0.948111 | 1.799618e-106 | -8.615850e-47 |
Msa0983880 | Msa1397970 | 0.817437 | 3.298828e-52 | -8.615850e-47 |
Msa0983880 | Msa1412080 | 0.822232 | 2.644295e-53 | -8.615850e-47 |
Msa0983880 | Msa1418200 | 0.807965 | 3.905230e-50 | -8.615850e-47 |
Msa0983880 | Msa1431000 | 0.821116 | 4.790338e-53 | -8.615850e-47 |
Msa0983880 | Msa1431730 | 0.806232 | 9.089564e-50 | -8.615850e-47 |
Msa0983880 | Msa1432640 | 0.824574 | 7.498060e-54 | -8.615850e-47 |
Msa0983880 | Msa1440610 | 0.806739 | 7.106089e-50 | -8.615850e-47 |
Msa0983880 | Msa1444450 | 0.806537 | 7.837768e-50 | -8.615850e-47 |
Msa0983880 | Msa1454110 | 0.806642 | 7.451062e-50 | -8.615850e-47 |
Msa0983880 | Msa1458920 | 0.801687 | 8.005700e-49 | -8.615850e-47 |
Msa0259330 | Msa0983880 | 0.802323 | 5.924323e-49 | -8.615850e-47 |
Msa0267760 | Msa0983880 | 0.810688 | 1.018018e-50 | -8.615850e-47 |
Msa0275030 | Msa0983880 | 0.820270 | 7.494769e-53 | -8.615850e-47 |
Msa0284780 | Msa0983880 | 0.842319 | 2.780331e-58 | -8.615850e-47 |
Msa0288240 | Msa0983880 | 0.808948 | 2.409776e-50 | -8.615850e-47 |
Msa0317260 | Msa0983880 | 0.832056 | 1.175257e-55 | -8.615850e-47 |
Msa0319200 | Msa0983880 | 0.802633 | 5.113008e-49 | -8.615850e-47 |
Msa0326670 | Msa0983880 | 0.820497 | 6.647950e-53 | -8.615850e-47 |
Msa0339860 | Msa0983880 | 0.809622 | 1.727849e-50 | -8.615850e-47 |
Msa0487910 | Msa0983880 | 0.807424 | 5.089993e-50 | -8.615850e-47 |
Msa0490300 | Msa0983880 | 0.825658 | 4.156944e-54 | -8.615850e-47 |
Msa0490350 | Msa0983880 | 0.811083 | 8.358203e-51 | -8.615850e-47 |
Msa0508200 | Msa0983880 | 0.816672 | 4.901002e-52 | -8.615850e-47 |
Msa0518040 | Msa0983880 | 0.801672 | 8.063074e-49 | -8.615850e-47 |
Msa0526710 | Msa0983880 | 0.806896 | 6.584051e-50 | -8.615850e-47 |
Msa0527590 | Msa0983880 | 0.824813 | 6.586033e-54 | -8.615850e-47 |
Msa0527600 | Msa0983880 | 0.808098 | 3.658875e-50 | -8.615850e-47 |
Msa0535030 | Msa0983880 | 0.829326 | 5.479780e-55 | -8.615850e-47 |
Msa0535060 | Msa0983880 | 0.828842 | 7.181215e-55 | -8.615850e-47 |
Msa0546380 | Msa0983880 | 0.841587 | 4.340111e-58 | -8.615850e-47 |
Msa0546740 | Msa0983880 | 0.810541 | 1.095291e-50 | -8.615850e-47 |
Msa0564930 | Msa0983880 | 0.830473 | 2.879684e-55 | -8.615850e-47 |
Msa0576420 | Msa0983880 | 0.804649 | 1.951814e-49 | -8.615850e-47 |
Msa0591060 | Msa0983880 | 0.818221 | 2.195163e-52 | -8.615850e-47 |
Msa0591770 | Msa0983880 | 0.810748 | 9.879673e-51 | -8.615850e-47 |
Msa0852730 | Msa0983880 | 0.815274 | 1.005566e-51 | -8.615850e-47 |
Msa0874760 | Msa0983880 | 0.803963 | 2.712180e-49 | -8.615850e-47 |
Msa0890250 | Msa0983880 | 0.817801 | 2.731301e-52 | -8.615850e-47 |
Msa0900320 | Msa0983880 | 0.809272 | 2.053485e-50 | -8.615850e-47 |
Msa0907700 | Msa0983880 | 0.845730 | 3.383777e-59 | -8.615850e-47 |
Msa0909710 | Msa0983880 | 0.803986 | 2.682381e-49 | -8.615850e-47 |
Msa0910400 | Msa0983880 | 0.816215 | 6.202437e-52 | -8.615850e-47 |
Msa0914900 | Msa0983880 | 0.962060 | 1.979924e-120 | -8.615850e-47 |
Msa0922540 | Msa0983880 | 0.803959 | 2.717847e-49 | -8.615850e-47 |
Msa0925160 | Msa0983880 | 0.848431 | 6.155670e-60 | -8.615850e-47 |
Msa0930330 | Msa0983880 | 0.816025 | 6.838462e-52 | -8.615850e-47 |
Msa0934830 | Msa0983880 | 0.803098 | 4.098511e-49 | -8.615850e-47 |
Msa0955260 | Msa0983880 | 0.827614 | 1.419477e-54 | -8.615850e-47 |
Msa0958020 | Msa0983880 | 0.817637 | 2.974115e-52 | -8.615850e-47 |
Msa0964680 | Msa0983880 | 0.806552 | 7.781881e-50 | -8.615850e-47 |
Msa0965960 | Msa0983880 | 0.845048 | 5.177658e-59 | -8.615850e-47 |
Msa0971860 | Msa0983880 | 0.810537 | 1.097211e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0983880 | MtrunA17_Chr6g0470101 | 88.961 | 308 | 11 | 3 | 1 | 289 | 51 | 354 | 0.0 | 521 |
Msa0983880 | MtrunA17_Chr3g0086601 | 41.791 | 201 | 97 | 3 | 41 | 222 | 75 | 274 | 2.93e-44 | 151 |
Msa0983880 | MtrunA17_Chr5g0398991 | 34.615 | 156 | 85 | 2 | 63 | 201 | 81 | 236 | 1.19e-25 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0983880 | AT4G21190.1 | 65.158 | 221 | 58 | 2 | 20 | 221 | 23 | 243 | 5.32e-102 | 300 |
Msa0983880 | AT4G18975.2 | 44.162 | 197 | 90 | 3 | 42 | 219 | 58 | 253 | 4.50e-49 | 164 |
Msa0983880 | AT4G18975.3 | 44.162 | 197 | 90 | 3 | 42 | 219 | 85 | 280 | 9.32e-49 | 164 |
Msa0983880 | AT4G18975.4 | 44.162 | 197 | 90 | 3 | 42 | 219 | 85 | 280 | 9.32e-49 | 164 |
Msa0983880 | AT4G18975.1 | 44.162 | 197 | 90 | 3 | 42 | 219 | 85 | 280 | 9.32e-49 | 164 |
Msa0983880 | AT1G04590.1 | 34.615 | 182 | 99 | 3 | 40 | 201 | 131 | 312 | 7.46e-26 | 105 |
Msa0983880 | AT1G04590.2 | 34.595 | 185 | 98 | 4 | 40 | 201 | 131 | 315 | 2.01e-24 | 101 |
Find 101 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTGTGGACTTCGCCATTTC+AGG | 0.183949 | 6_4:-27235941 | None:intergenic |
ACGTATCTATCAACTTTATT+AGG | 0.201297 | 6_4:-27235498 | None:intergenic |
TCCTATAATTACAGTGAAAA+AGG | 0.241597 | 6_4:+27233432 | Msa0983880:CDS |
TTACGGCCAGGTTTGGGTTT+TGG | 0.249976 | 6_4:-27231715 | None:intergenic |
TGGTAGCCATTTCATTTATA+AGG | 0.263319 | 6_4:+27235874 | Msa0983880:three_prime_UTR |
AAAATGTAAGCCTGAGAATT+TGG | 0.265784 | 6_4:+27235851 | Msa0983880:three_prime_UTR |
GACAATGTTCAACGAAATTC+AGG | 0.282692 | 6_4:+27235531 | Msa0983880:CDS |
AATGTCAAAGAAGAAGTTTA+TGG | 0.291907 | 6_4:+27233373 | Msa0983880:CDS |
AGATGAGTCATCTGAGTTTA+CGG | 0.299452 | 6_4:+27235656 | Msa0983880:CDS |
CCGAGATTTACGGCCAGGTT+TGG | 0.305873 | 6_4:-27231722 | None:intergenic |
GAACAGGATGCCGATTTAAT+AGG | 0.309673 | 6_4:+27235612 | Msa0983880:CDS |
CTTCAATTCAGCATTGATAC+TGG | 0.319784 | 6_4:-27235990 | None:intergenic |
AATGCATATAGGCTTTGATT+AGG | 0.320445 | 6_4:+27236076 | Msa0983880:three_prime_UTR |
TACACACAAAATCATTATTT+CGG | 0.321174 | 6_4:+27235759 | Msa0983880:three_prime_UTR |
TTTCCTGAATGCATAATATA+TGG | 0.334719 | 6_4:+27236034 | Msa0983880:three_prime_UTR |
CTAACTCCGCCCGAGATTTA+CGG | 0.342115 | 6_4:-27231732 | None:intergenic |
TCTCCATATATTATGCATTC+AGG | 0.344803 | 6_4:-27236037 | None:intergenic |
AAGGAAAGCGTGTAAGAATC+AGG | 0.347993 | 6_4:+27235463 | Msa0983880:CDS |
TGAAACTATAGGTAACAAAA+TGG | 0.351629 | 6_4:+27233681 | Msa0983880:intron |
GACCAAGATATCCTCGAGTT+TGG | 0.361562 | 6_4:+27231969 | Msa0983880:CDS |
TGACTCATCTGAAATTTGTT+TGG | 0.365964 | 6_4:-27235643 | None:intergenic |
CGAGATTTACGGCCAGGTTT+GGG | 0.373990 | 6_4:-27231721 | None:intergenic |
TTGACGAAGCAGAAGAGCTT+TGG | 0.377250 | 6_4:+27233780 | Msa0983880:CDS |
TATTTGATATGTTAATTTGT+TGG | 0.381277 | 6_4:-27231824 | None:intergenic |
GGTTTCCATGCCTATTAAAT+CGG | 0.386492 | 6_4:-27235622 | None:intergenic |
AAGTGGATGATGATGGATTT+GGG | 0.389153 | 6_4:-27231642 | None:intergenic |
ATGCATATAGGCTTTGATTA+GGG | 0.389204 | 6_4:+27236077 | Msa0983880:three_prime_UTR |
CGAGGTAAGGTGAAGACATT+AGG | 0.390237 | 6_4:+27235805 | Msa0983880:three_prime_UTR |
GAAGTGGATGATGATGGATT+TGG | 0.396162 | 6_4:-27231643 | None:intergenic |
TAGTAGTTCTGTTGTCTCAA+TGG | 0.409178 | 6_4:+27235347 | Msa0983880:CDS |
TTCCAAACTCGAGGATATCT+TGG | 0.417267 | 6_4:-27231971 | None:intergenic |
TGATATCCTTATAAATGAAA+TGG | 0.417527 | 6_4:-27235880 | None:intergenic |
AGAAGAGACTTCAGAGTTAA+CGG | 0.420834 | 6_4:+27235575 | Msa0983880:CDS |
TCTACTTCAGATTCCTGAAA+TGG | 0.427650 | 6_4:+27235928 | Msa0983880:three_prime_UTR |
AAGGTATTTGCTGCTGCAAA+AGG | 0.436480 | 6_4:+27231941 | Msa0983880:intron |
TGAATTGAAGTTGGGTACTT+TGG | 0.441846 | 6_4:+27236003 | Msa0983880:three_prime_UTR |
CCAAACCTGGCCGTAAATCT+CGG | 0.445698 | 6_4:+27231722 | Msa0983880:five_prime_UTR |
CTGCTTGTGGCGGTGGCTGA+TGG | 0.447414 | 6_4:-27231755 | None:intergenic |
GCATAATATATGGAGATTGT+AGG | 0.449323 | 6_4:+27236044 | Msa0983880:three_prime_UTR |
CTATATTCCCATTGTGGTGG+TGG | 0.450226 | 6_4:-27235432 | None:intergenic |
AAAATATCCACCACCACAAT+GGG | 0.452410 | 6_4:+27235425 | Msa0983880:CDS |
ACTCGAGGATATCTTGGTCT+TGG | 0.456302 | 6_4:-27231965 | None:intergenic |
TTCGACTTGCTGCTGATGTA+AGG | 0.458742 | 6_4:-27231674 | None:intergenic |
CTCTTGATACCTATGTCGCT+TGG | 0.459035 | 6_4:+27233398 | Msa0983880:CDS |
AGCATTACTGCTTGTGGCGG+TGG | 0.467846 | 6_4:-27231762 | None:intergenic |
TATCAATGCTGAATTGAAGT+TGG | 0.470532 | 6_4:+27235994 | Msa0983880:three_prime_UTR |
ATGTAAGGTTGGTGTGGAAG+TGG | 0.475787 | 6_4:-27231659 | None:intergenic |
CATGTAGGTATTTGCAGACA+TGG | 0.476328 | 6_4:+27235305 | Msa0983880:intron |
GGACGATGAACAATTCGAAC+AGG | 0.477783 | 6_4:+27235596 | Msa0983880:CDS |
TCCGCCCGAGATTTACGGCC+AGG | 0.477901 | 6_4:-27231727 | None:intergenic |
AGTTCTGTTGTCTCAATGGT+TGG | 0.480356 | 6_4:+27235351 | Msa0983880:CDS |
AATGGTTGGAAATGTCTTCA+AGG | 0.484077 | 6_4:+27235365 | Msa0983880:CDS |
GATATGTTAATTTGTTGGTA+TGG | 0.485734 | 6_4:-27231819 | None:intergenic |
CTTCAAGGAGCTAGGTATGA+TGG | 0.487411 | 6_4:+27235380 | Msa0983880:CDS |
CATAATATATGGAGATTGTA+GGG | 0.487894 | 6_4:+27236045 | Msa0983880:three_prime_UTR |
ATATCTATCTACTGTAAAAG+AGG | 0.491255 | 6_4:+27233860 | Msa0983880:CDS |
ATCAATGCTGAATTGAAGTT+GGG | 0.492173 | 6_4:+27235995 | Msa0983880:three_prime_UTR |
CTTGCATGATAAGATGTTTG+AGG | 0.498325 | 6_4:+27233883 | Msa0983880:CDS |
TCTTGATACCTATGTCGCTT+GGG | 0.501458 | 6_4:+27233399 | Msa0983880:CDS |
CAAACCTGGCCGTAAATCTC+GGG | 0.502020 | 6_4:+27231723 | Msa0983880:five_prime_UTR |
GAAGTTCTGTGTTATACTGT+TGG | 0.504569 | 6_4:+27236109 | Msa0983880:three_prime_UTR |
AACAAAATGGATGTTAAGCA+AGG | 0.507980 | 6_4:+27233694 | Msa0983880:CDS |
ATGGCTACCACCAAATTCTC+AGG | 0.509342 | 6_4:-27235861 | None:intergenic |
TTGTGTGTAACCAACATCAA+TGG | 0.511366 | 6_4:-27235745 | None:intergenic |
TCTCGTTATACATCTAAACT+TGG | 0.517938 | 6_4:-27235681 | None:intergenic |
CTACATGCTGTTACGAGGTA+AGG | 0.523242 | 6_4:+27235792 | Msa0983880:three_prime_UTR |
ATTGAGACAACAGAACTACT+AGG | 0.527919 | 6_4:-27235345 | None:intergenic |
TGCCCGCCAAAACCCAAACC+TGG | 0.542227 | 6_4:+27231709 | Msa0983880:five_prime_UTR |
GCTCTTCTGCTTCGTCAACT+CGG | 0.545541 | 6_4:-27233775 | None:intergenic |
TTTCTGTTGGCCATTGATGT+TGG | 0.548156 | 6_4:+27235735 | Msa0983880:three_prime_UTR |
TGATAGATACGTAAGAAAGC+AGG | 0.551062 | 6_4:+27235509 | Msa0983880:CDS |
ACTTGCTGCTGATGTAAGGT+TGG | 0.552667 | 6_4:-27231670 | None:intergenic |
ACTAACAGATAAGTTTCTGT+TGG | 0.553495 | 6_4:+27235722 | Msa0983880:three_prime_UTR |
GATGTATAACGAGAGAAAGA+TGG | 0.554815 | 6_4:+27235690 | Msa0983880:exon |
TTCTAGTTCCCAAGCGACAT+AGG | 0.558781 | 6_4:-27233407 | None:intergenic |
CTGCTGATGTAAGGTTGGTG+TGG | 0.558823 | 6_4:-27231665 | None:intergenic |
GGATGCCGATTTAATAGGCA+TGG | 0.559417 | 6_4:+27235617 | Msa0983880:CDS |
ATGTATCTATATTCCCATTG+TGG | 0.561013 | 6_4:-27235438 | None:intergenic |
AAGGGTCAAGGAAAGACAAT+GGG | 0.563191 | 6_4:+27233713 | Msa0983880:CDS |
TTATTAGTCTTCCAAACTCG+AGG | 0.571818 | 6_4:-27231980 | None:intergenic |
GAACATAACAACTTATACTG+TGG | 0.577110 | 6_4:-27235957 | None:intergenic |
GGAAATGTCTTCAAGGAGCT+AGG | 0.581726 | 6_4:+27235372 | Msa0983880:CDS |
ATTACTTAATGCTTTAGCAG+AGG | 0.581952 | 6_4:+27233748 | Msa0983880:CDS |
ATGTAAGCCTGAGAATTTGG+TGG | 0.593101 | 6_4:+27235854 | Msa0983880:three_prime_UTR |
GGTGTGGAAGTGGATGATGA+TGG | 0.594460 | 6_4:-27231649 | None:intergenic |
CGTGTAAGAATCAGGGTGCA+AGG | 0.595586 | 6_4:+27235471 | Msa0983880:CDS |
ACGAAATTCAGGCTTAAGAG+AGG | 0.595718 | 6_4:+27235542 | Msa0983880:CDS |
TGGGAATATAGATACATCAA+AGG | 0.609942 | 6_4:+27235444 | Msa0983880:CDS |
AGGAAAGCGTGTAAGAATCA+GGG | 0.610217 | 6_4:+27235464 | Msa0983880:CDS |
TGGATGTTAAGCAAGGGTCA+AGG | 0.625921 | 6_4:+27233701 | Msa0983880:CDS |
TATCTATATTCCCATTGTGG+TGG | 0.627567 | 6_4:-27235435 | None:intergenic |
CTTACCTCGTAACAGCATGT+AGG | 0.629695 | 6_4:-27235791 | None:intergenic |
TATGGTTTAGCAATAAGTAG+AGG | 0.629980 | 6_4:-27231801 | None:intergenic |
ACAAAATGGATGTTAAGCAA+GGG | 0.632530 | 6_4:+27233695 | Msa0983880:CDS |
CAAGGGTCAAGGAAAGACAA+TGG | 0.634494 | 6_4:+27233712 | Msa0983880:CDS |
GACTCCTACATGCTGTTACG+AGG | 0.640590 | 6_4:+27235787 | Msa0983880:three_prime_UTR |
ACCTGGCCGTAAATCTCGGG+CGG | 0.643892 | 6_4:+27231726 | Msa0983880:five_prime_UTR |
AGTGAAAGCATTACTGCTTG+TGG | 0.656125 | 6_4:-27231768 | None:intergenic |
AAAGTTGTTAATGCAGTACA+CGG | 0.674701 | 6_4:+27233805 | Msa0983880:CDS |
GAAAGCATTACTGCTTGTGG+CGG | 0.705239 | 6_4:-27231765 | None:intergenic |
GTAGGTATTTGCAGACATGG+AGG | 0.706718 | 6_4:+27235308 | Msa0983880:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAGTAAAAAGATTAATT+TGG | + | chr6_4:27231607-27231626 | Msa0983880:five_prime_UTR | 10.0% |
!! | AAAATAATTACTCAAATTTA+AGG | - | chr6_4:27233967-27233986 | None:intergenic | 10.0% |
!! | TTATATATATTCTGTAAATA+TGG | + | chr6_4:27234109-27234128 | Msa0983880:intron | 10.0% |
!!! | TATTTGATATGTTAATTTGT+TGG | - | chr6_4:27231827-27231846 | None:intergenic | 15.0% |
!! | AATAACTAAGTAGTTATTTA+TGG | + | chr6_4:27234761-27234780 | Msa0983880:intron | 15.0% |
!!! | TTGAAACTAATATTTTAGTT+CGG | + | chr6_4:27235120-27235139 | Msa0983880:intron | 15.0% |
!! | TGGAAGACTAATAAAAAAAT+TGG | + | chr6_4:27231989-27232008 | Msa0983880:CDS | 20.0% |
!!! | AAAAATTGGAACTATTTCTA+AGG | + | chr6_4:27232003-27232022 | Msa0983880:CDS | 20.0% |
!! | TAAATTTAATAACATGTGTG+TGG | + | chr6_4:27232178-27232197 | Msa0983880:intron | 20.0% |
!! | AAATTTAATAACATGTGTGT+GGG | + | chr6_4:27232179-27232198 | Msa0983880:intron | 20.0% |
!! | AATCTTAGTAGTTTATACTT+TGG | + | chr6_4:27232580-27232599 | Msa0983880:intron | 20.0% |
!! | AATGAACATAAAAAATCACA+AGG | - | chr6_4:27233530-27233549 | None:intergenic | 20.0% |
!!! | AAATTACTTTCTGAAACTAT+AGG | + | chr6_4:27233670-27233689 | Msa0983880:intron | 20.0% |
!! | TTGTATATTCAAAGTTCAAA+TGG | + | chr6_4:27234019-27234038 | Msa0983880:intron | 20.0% |
!! | AAAGCTATTAGAGTAAAAAT+AGG | + | chr6_4:27234065-27234084 | Msa0983880:intron | 20.0% |
!! | ATTTGCATGTTTACTATATT+AGG | - | chr6_4:27234821-27234840 | None:intergenic | 20.0% |
!! | TTTCTTAAGAAGTAAACATA+CGG | + | chr6_4:27235015-27235034 | Msa0983880:intron | 20.0% |
!! | ATTATTATTATGTGCTTTAG+TGG | - | chr6_4:27235221-27235240 | None:intergenic | 20.0% |
!! | ACAAACAAATGTTGTTAATA+TGG | + | chr6_4:27235248-27235267 | Msa0983880:intron | 20.0% |
!! | TACACACAAAATCATTATTT+CGG | + | chr6_4:27235759-27235778 | Msa0983880:three_prime_UTR | 20.0% |
!! | TGATATCCTTATAAATGAAA+TGG | - | chr6_4:27235883-27235902 | None:intergenic | 20.0% |
!!! | GTATAATTGTTTTTGTATCA+AGG | - | chr6_4:27236187-27236206 | None:intergenic | 20.0% |
!!! | GATATGTTAATTTGTTGGTA+TGG | - | chr6_4:27231822-27231841 | None:intergenic | 25.0% |
!!! | TCCTTAGTTCTATAGTTTTT+AGG | + | chr6_4:27231874-27231893 | Msa0983880:intron | 25.0% |
!!! | CCTTAGTTCTATAGTTTTTA+GGG | + | chr6_4:27231875-27231894 | Msa0983880:intron | 25.0% |
!! | ATGTCTTAGATAAAAAGTGT+TGG | + | chr6_4:27232223-27232242 | Msa0983880:intron | 25.0% |
! | TTCAGTGTAATTATATGTGT+CGG | - | chr6_4:27232460-27232479 | None:intergenic | 25.0% |
!!! | AAAAATTGGTGTTTTTGTTG+AGG | + | chr6_4:27232838-27232857 | Msa0983880:intron | 25.0% |
!!! | AAAATTGGTGTTTTTGTTGA+GGG | + | chr6_4:27232839-27232858 | Msa0983880:intron | 25.0% |
! | ATTACCGAGTTGTAAAATAT+TGG | + | chr6_4:27232908-27232927 | Msa0983880:intron | 25.0% |
! | AATGTCAAAGAAGAAGTTTA+TGG | + | chr6_4:27233373-27233392 | Msa0983880:CDS | 25.0% |
! | TCCTATAATTACAGTGAAAA+AGG | + | chr6_4:27233432-27233451 | Msa0983880:CDS | 25.0% |
!!! | ACCTTTTTCACTGTAATTAT+AGG | - | chr6_4:27233436-27233455 | None:intergenic | 25.0% |
! | TGAAACTATAGGTAACAAAA+TGG | + | chr6_4:27233681-27233700 | Msa0983880:intron | 25.0% |
!! | ATTTTATCAAAGAATCTACG+TGG | - | chr6_4:27233839-27233858 | None:intergenic | 25.0% |
! | ATATCTATCTACTGTAAAAG+AGG | + | chr6_4:27233860-27233879 | Msa0983880:CDS | 25.0% |
! | TCAAATGGCAAAATATACAT+TGG | + | chr6_4:27234034-27234053 | Msa0983880:intron | 25.0% |
!!! | TTTTTTCAGCATATTTCCAA+TGG | - | chr6_4:27234253-27234272 | None:intergenic | 25.0% |
! | GGAAATATGCTGAAAAAAAA+AGG | + | chr6_4:27234255-27234274 | Msa0983880:intron | 25.0% |
! | AAATAACTGAATGAAAACAG+AGG | + | chr6_4:27234316-27234335 | Msa0983880:intron | 25.0% |
! | AAAAATCAAATAGAGTGGTA+TGG | + | chr6_4:27234598-27234617 | Msa0983880:intron | 25.0% |
!!! | AGTGTTGTTATTTATAGACT+CGG | + | chr6_4:27234680-27234699 | Msa0983880:intron | 25.0% |
! | ACAAATGTTGTTAATATGGA+TGG | + | chr6_4:27235252-27235271 | Msa0983880:intron | 25.0% |
! | AATTGAGTAAAATATTGAGC+CGG | - | chr6_4:27235282-27235301 | None:intergenic | 25.0% |
!! | TTTTACTCAATTTCTCATGT+AGG | + | chr6_4:27235290-27235309 | Msa0983880:intron | 25.0% |
! | ACGTATCTATCAACTTTATT+AGG | - | chr6_4:27235501-27235520 | None:intergenic | 25.0% |
! | TTTCCTGAATGCATAATATA+TGG | + | chr6_4:27236034-27236053 | Msa0983880:three_prime_UTR | 25.0% |
! | CATAATATATGGAGATTGTA+GGG | + | chr6_4:27236045-27236064 | Msa0983880:three_prime_UTR | 25.0% |
TATGGTTTAGCAATAAGTAG+AGG | - | chr6_4:27231804-27231823 | None:intergenic | 30.0% | |
CCCTAAAAACTATAGAACTA+AGG | - | chr6_4:27231878-27231897 | None:intergenic | 30.0% | |
!! | CTTTTTATCTAAGACATGTC+CGG | - | chr6_4:27232220-27232239 | None:intergenic | 30.0% |
!!! | GACACAGTGACTTTTTTATA+TGG | - | chr6_4:27232731-27232750 | None:intergenic | 30.0% |
! | ATTTTTATGACTTTAACCCG+TGG | - | chr6_4:27232824-27232843 | None:intergenic | 30.0% |
CGGGTTAAAGTCATAAAAAT+TGG | + | chr6_4:27232824-27232843 | Msa0983880:intron | 30.0% | |
! | ATGGCCAATATTTTACAACT+CGG | - | chr6_4:27232915-27232934 | None:intergenic | 30.0% |
!!! | CACCATGGTGTTTTATTTTA+TGG | + | chr6_4:27232995-27233014 | Msa0983880:intron | 30.0% |
!!! | CATGGTGTTTTATTTTATGG+CGG | + | chr6_4:27232998-27233017 | Msa0983880:intron | 30.0% |
! | TATTTTATGGCGGTTCAAAA+TGG | + | chr6_4:27233008-27233027 | Msa0983880:intron | 30.0% |
TTTATGTTCAACTCTCTTCA+TGG | + | chr6_4:27233232-27233251 | Msa0983880:intron | 30.0% | |
TTATGTTCAACTCTCTTCAT+GGG | + | chr6_4:27233233-27233252 | Msa0983880:intron | 30.0% | |
AACAAAATGGATGTTAAGCA+AGG | + | chr6_4:27233694-27233713 | Msa0983880:CDS | 30.0% | |
ACAAAATGGATGTTAAGCAA+GGG | + | chr6_4:27233695-27233714 | Msa0983880:CDS | 30.0% | |
ATTACTTAATGCTTTAGCAG+AGG | + | chr6_4:27233748-27233767 | Msa0983880:CDS | 30.0% | |
AAAGTTGTTAATGCAGTACA+CGG | + | chr6_4:27233805-27233824 | Msa0983880:CDS | 30.0% | |
ATGAAACGAAGATGTTCATT+CGG | + | chr6_4:27234170-27234189 | Msa0983880:intron | 30.0% | |
TATGCTGAAAAAAAAAGGAG+AGG | + | chr6_4:27234260-27234279 | Msa0983880:intron | 30.0% | |
GAAAGAAACCAAAAACATAG+AGG | + | chr6_4:27234282-27234301 | Msa0983880:intron | 30.0% | |
AAAAGACTTGACAAATACTC+AGG | + | chr6_4:27234384-27234403 | Msa0983880:intron | 30.0% | |
GGCAAAAAAATCAAATAGAG+TGG | + | chr6_4:27234593-27234612 | Msa0983880:intron | 30.0% | |
!! | TTTAATCAGTAGCTTTAGTG+TGG | + | chr6_4:27234962-27234981 | Msa0983880:intron | 30.0% |
ACAATCCAGTACTATATTCT+AGG | - | chr6_4:27235054-27235073 | None:intergenic | 30.0% | |
AAAGTTGTTACAGTAGATGA+CGG | + | chr6_4:27235093-27235112 | Msa0983880:intron | 30.0% | |
TTTCTTGCAGTCAGTTATTT+CGG | - | chr6_4:27235161-27235180 | None:intergenic | 30.0% | |
TGTTAATATGGATGGAATTC+CGG | + | chr6_4:27235260-27235279 | Msa0983880:intron | 30.0% | |
ATGTATCTATATTCCCATTG+TGG | - | chr6_4:27235441-27235460 | None:intergenic | 30.0% | |
TGGGAATATAGATACATCAA+AGG | + | chr6_4:27235444-27235463 | Msa0983880:CDS | 30.0% | |
! | TGACTCATCTGAAATTTGTT+TGG | - | chr6_4:27235646-27235665 | None:intergenic | 30.0% |
TCTCGTTATACATCTAAACT+TGG | - | chr6_4:27235684-27235703 | None:intergenic | 30.0% | |
ACTAACAGATAAGTTTCTGT+TGG | + | chr6_4:27235722-27235741 | Msa0983880:three_prime_UTR | 30.0% | |
AAAATGTAAGCCTGAGAATT+TGG | + | chr6_4:27235851-27235870 | Msa0983880:three_prime_UTR | 30.0% | |
TGGTAGCCATTTCATTTATA+AGG | + | chr6_4:27235874-27235893 | Msa0983880:three_prime_UTR | 30.0% | |
GAACATAACAACTTATACTG+TGG | - | chr6_4:27235960-27235979 | None:intergenic | 30.0% | |
TATCAATGCTGAATTGAAGT+TGG | + | chr6_4:27235994-27236013 | Msa0983880:three_prime_UTR | 30.0% | |
ATCAATGCTGAATTGAAGTT+GGG | + | chr6_4:27235995-27236014 | Msa0983880:three_prime_UTR | 30.0% | |
TCTCCATATATTATGCATTC+AGG | - | chr6_4:27236040-27236059 | None:intergenic | 30.0% | |
GCATAATATATGGAGATTGT+AGG | + | chr6_4:27236044-27236063 | Msa0983880:three_prime_UTR | 30.0% | |
! | AATGCATATAGGCTTTGATT+AGG | + | chr6_4:27236076-27236095 | Msa0983880:three_prime_UTR | 30.0% |
! | ATGCATATAGGCTTTGATTA+GGG | + | chr6_4:27236077-27236096 | Msa0983880:three_prime_UTR | 30.0% |
!! | AAGTGGATGATGATGGATTT+GGG | - | chr6_4:27231645-27231664 | None:intergenic | 35.0% |
!! | TTATTAGTCTTCCAAACTCG+AGG | - | chr6_4:27231983-27232002 | None:intergenic | 35.0% |
TATTCGAGAAAATAGCGTGT+TGG | + | chr6_4:27232309-27232328 | Msa0983880:intron | 35.0% | |
! | GCTTCATAGCTTTTGATCAA+AGG | - | chr6_4:27232370-27232389 | None:intergenic | 35.0% |
! | CTCTTTTGATCTATGAAGCA+CGG | - | chr6_4:27232544-27232563 | None:intergenic | 35.0% |
GCTTCATAGATCAAAAGAGT+CGG | + | chr6_4:27232545-27232564 | Msa0983880:intron | 35.0% | |
ACTACCATATCACAACTAGT+GGG | - | chr6_4:27232609-27232628 | None:intergenic | 35.0% | |
TACTACCATATCACAACTAG+TGG | - | chr6_4:27232610-27232629 | None:intergenic | 35.0% | |
TATGGTAGTAGTACTCTTTG+TGG | + | chr6_4:27232620-27232639 | Msa0983880:intron | 35.0% | |
AAAAAAGTCACTGTGTCCTT+TGG | + | chr6_4:27232734-27232753 | Msa0983880:intron | 35.0% | |
GGTCATAGACAAATAGTGAA+GGG | - | chr6_4:27232778-27232797 | None:intergenic | 35.0% | |
AGGTCATAGACAAATAGTGA+AGG | - | chr6_4:27232779-27232798 | None:intergenic | 35.0% | |
!! | TTGTCTATGACCTAGTCTTT+TGG | + | chr6_4:27232786-27232805 | Msa0983880:intron | 35.0% |
!! | TGTCTATGACCTAGTCTTTT+GGG | + | chr6_4:27232787-27232806 | Msa0983880:intron | 35.0% |
GTTACGGAAAAGCTACTTAT+TGG | + | chr6_4:27232867-27232886 | Msa0983880:intron | 35.0% | |
TTGTAAAATATTGGCCATGC+TGG | + | chr6_4:27232917-27232936 | Msa0983880:intron | 35.0% | |
AAAATAAAACACCATGGTGC+CGG | - | chr6_4:27232994-27233013 | None:intergenic | 35.0% | |
CGCCATAAAATAAAACACCA+TGG | - | chr6_4:27233000-27233019 | None:intergenic | 35.0% | |
AATGGCAGAACATGGTAAAA+AGG | - | chr6_4:27233044-27233063 | None:intergenic | 35.0% | |
AATTCCAAAAAGCTACCACA+TGG | + | chr6_4:27233117-27233136 | Msa0983880:intron | 35.0% | |
!! | ACCTTAAGCTGATTTTTCCT+TGG | + | chr6_4:27233289-27233308 | Msa0983880:intron | 35.0% |
TCCAAGGAAAAATCAGCTTA+AGG | - | chr6_4:27233293-27233312 | None:intergenic | 35.0% | |
!! | CTCTAGAATACGAGAAAGAA+TGG | + | chr6_4:27233464-27233483 | Msa0983880:intron | 35.0% |
AATACGAGAAAGAATGGAAG+CGG | + | chr6_4:27233470-27233489 | Msa0983880:intron | 35.0% | |
! | GCTGATTTATGTTCCTTCTT+TGG | + | chr6_4:27233618-27233637 | Msa0983880:intron | 35.0% |
CTTGCATGATAAGATGTTTG+AGG | + | chr6_4:27233883-27233902 | Msa0983880:CDS | 35.0% | |
! | TTTCATCAATTAGCCTGTCT+TGG | - | chr6_4:27234148-27234167 | None:intergenic | 35.0% |
TCTTAATGGTGTTCAGCTAA+GGG | - | chr6_4:27234209-27234228 | None:intergenic | 35.0% | |
TTCTTAATGGTGTTCAGCTA+AGG | - | chr6_4:27234210-27234229 | None:intergenic | 35.0% | |
!! | TAGTCTTACTGGCTTCTTAA+TGG | - | chr6_4:27234223-27234242 | None:intergenic | 35.0% |
! | ATGGAATACAGTAGTCTTAC+TGG | - | chr6_4:27234234-27234253 | None:intergenic | 35.0% |
GTAAGACTACTGTATTCCAT+TGG | + | chr6_4:27234234-27234253 | Msa0983880:intron | 35.0% | |
AACCAAAAACATAGAGGAAG+AGG | + | chr6_4:27234288-27234307 | Msa0983880:intron | 35.0% | |
! | TTCCTCTTCCTCTATGTTTT+TGG | - | chr6_4:27234293-27234312 | None:intergenic | 35.0% |
AAAACATAGAGGAAGAGGAA+AGG | + | chr6_4:27234293-27234312 | Msa0983880:intron | 35.0% | |
AATGAAAACAGAGGCAGAAA+AGG | + | chr6_4:27234325-27234344 | Msa0983880:intron | 35.0% | |
ATGAAAACAGAGGCAGAAAA+GGG | + | chr6_4:27234326-27234345 | Msa0983880:intron | 35.0% | |
TCAAATAGAGTGGTATGGAT+AGG | + | chr6_4:27234603-27234622 | Msa0983880:intron | 35.0% | |
GGAATGATTGATCGTTACAT+TGG | + | chr6_4:27234649-27234668 | Msa0983880:intron | 35.0% | |
TTATTTATAGACTCGGCCTA+GGG | + | chr6_4:27234687-27234706 | Msa0983880:intron | 35.0% | |
AATACTCCAACATCTTTCCT+AGG | + | chr6_4:27234846-27234865 | Msa0983880:intron | 35.0% | |
TCAGACTAAATTGAACACCT+AGG | - | chr6_4:27234866-27234885 | None:intergenic | 35.0% | |
!! | AGTACTATATTCTAGGACCA+AGG | - | chr6_4:27235047-27235066 | None:intergenic | 35.0% |
TTGGTCCTAGAATATAGTAC+TGG | + | chr6_4:27235046-27235065 | Msa0983880:intron | 35.0% | |
! | GAATATAGTACTGGATTGTG+CGG | + | chr6_4:27235055-27235074 | Msa0983880:intron | 35.0% |
! | AATATAGTACTGGATTGTGC+GGG | + | chr6_4:27235056-27235075 | Msa0983880:intron | 35.0% |
! | TTAGTTCGGTGAGAAATCAT+TGG | + | chr6_4:27235134-27235153 | Msa0983880:intron | 35.0% |
GAAATAACTACAGCTATGTG+AGG | + | chr6_4:27235177-27235196 | Msa0983880:intron | 35.0% | |
ATTGAGACAACAGAACTACT+AGG | - | chr6_4:27235348-27235367 | None:intergenic | 35.0% | |
! | TAGTAGTTCTGTTGTCTCAA+TGG | + | chr6_4:27235347-27235366 | Msa0983880:CDS | 35.0% |
AATGGTTGGAAATGTCTTCA+AGG | + | chr6_4:27235365-27235384 | Msa0983880:CDS | 35.0% | |
AAAAATATCCACCACCACAA+TGG | + | chr6_4:27235424-27235443 | Msa0983880:CDS | 35.0% | |
AAAATATCCACCACCACAAT+GGG | + | chr6_4:27235425-27235444 | Msa0983880:CDS | 35.0% | |
TATCTATATTCCCATTGTGG+TGG | - | chr6_4:27235438-27235457 | None:intergenic | 35.0% | |
TGATAGATACGTAAGAAAGC+AGG | + | chr6_4:27235509-27235528 | Msa0983880:CDS | 35.0% | |
GACAATGTTCAACGAAATTC+AGG | + | chr6_4:27235531-27235550 | Msa0983880:CDS | 35.0% | |
AGAAGAGACTTCAGAGTTAA+CGG | + | chr6_4:27235575-27235594 | Msa0983880:CDS | 35.0% | |
GGTTTCCATGCCTATTAAAT+CGG | - | chr6_4:27235625-27235644 | None:intergenic | 35.0% | |
AGATGAGTCATCTGAGTTTA+CGG | + | chr6_4:27235656-27235675 | Msa0983880:CDS | 35.0% | |
GATGTATAACGAGAGAAAGA+TGG | + | chr6_4:27235690-27235709 | Msa0983880:exon | 35.0% | |
TTGTGTGTAACCAACATCAA+TGG | - | chr6_4:27235748-27235767 | None:intergenic | 35.0% | |
TCTACTTCAGATTCCTGAAA+TGG | + | chr6_4:27235928-27235947 | Msa0983880:three_prime_UTR | 35.0% | |
!! | CTTCAATTCAGCATTGATAC+TGG | - | chr6_4:27235993-27236012 | None:intergenic | 35.0% |
TGAATTGAAGTTGGGTACTT+TGG | + | chr6_4:27236003-27236022 | Msa0983880:three_prime_UTR | 35.0% | |
! | GGGTGATTTTCAATGCATAT+AGG | + | chr6_4:27236065-27236084 | Msa0983880:three_prime_UTR | 35.0% |
GAAGTTCTGTGTTATACTGT+TGG | + | chr6_4:27236109-27236128 | Msa0983880:three_prime_UTR | 35.0% | |
!! | GAAGTGGATGATGATGGATT+TGG | - | chr6_4:27231646-27231665 | None:intergenic | 40.0% |
!! | AGTGAAAGCATTACTGCTTG+TGG | - | chr6_4:27231771-27231790 | None:intergenic | 40.0% |
! | AAGGTATTTGCTGCTGCAAA+AGG | + | chr6_4:27231941-27231960 | Msa0983880:intron | 40.0% |
TTCCAAACTCGAGGATATCT+TGG | - | chr6_4:27231974-27231993 | None:intergenic | 40.0% | |
AAACGAATATAGCGAACGCA+AGG | - | chr6_4:27232059-27232078 | None:intergenic | 40.0% | |
TGACACTAATACATCGACAC+TGG | + | chr6_4:27232282-27232301 | Msa0983880:intron | 40.0% | |
! | AGAAAATAGCGTGTTGGTGT+AGG | + | chr6_4:27232315-27232334 | Msa0983880:intron | 40.0% |
TATGAAGCACAGACACTTCT+CGG | + | chr6_4:27232382-27232401 | Msa0983880:intron | 40.0% | |
ACGGATATAGACATGGACAT+CGG | - | chr6_4:27232525-27232544 | None:intergenic | 40.0% | |
ATGAAGCACGGATATAGACA+TGG | - | chr6_4:27232532-27232551 | None:intergenic | 40.0% | |
GTTTCCCACTAGTTGTGATA+TGG | + | chr6_4:27232602-27232621 | Msa0983880:intron | 40.0% | |
!! | GTCTATGACCTAGTCTTTTG+GGG | + | chr6_4:27232788-27232807 | Msa0983880:intron | 40.0% |
!! | TGGTGTTTTTGTTGAGGGTT+TGG | + | chr6_4:27232844-27232863 | Msa0983880:intron | 40.0% |
!! | GGTGTTTTTGTTGAGGGTTT+GGG | + | chr6_4:27232845-27232864 | Msa0983880:intron | 40.0% |
! | TTTGTTGAGGGTTTGGGTTA+CGG | + | chr6_4:27232851-27232870 | Msa0983880:intron | 40.0% |
GAGAAATTTGTGAAGGATGC+CGG | + | chr6_4:27232972-27232991 | Msa0983880:intron | 40.0% | |
TTTATGGCGGTTCAAAATGG+TGG | + | chr6_4:27233011-27233030 | Msa0983880:intron | 40.0% | |
! | ATAGCGTTGTCGATTGCAAA+TGG | - | chr6_4:27233062-27233081 | None:intergenic | 40.0% |
!!! | TGGTAGCTTTTTGGAATTCG+TGG | - | chr6_4:27233115-27233134 | None:intergenic | 40.0% |
TGATAGAGTAAAATCCGTCG+TGG | + | chr6_4:27233147-27233166 | Msa0983880:intron | 40.0% | |
CCAGAATTGCAAATCATCCA+AGG | - | chr6_4:27233309-27233328 | None:intergenic | 40.0% | |
! | CCTTGGATGATTTGCAATTC+TGG | + | chr6_4:27233306-27233325 | Msa0983880:intron | 40.0% |
! | TCTTGATACCTATGTCGCTT+GGG | + | chr6_4:27233399-27233418 | Msa0983880:CDS | 40.0% |
AGAATGGAAGCGGATAATAC+AGG | + | chr6_4:27233480-27233499 | Msa0983880:intron | 40.0% | |
AAGGGTCAAGGAAAGACAAT+GGG | + | chr6_4:27233713-27233732 | Msa0983880:CDS | 40.0% | |
! | TTCAGCTAAGGGCTATTTCA+GGG | - | chr6_4:27234198-27234217 | None:intergenic | 40.0% |
GATAGGATATGAGCGAACAA+AGG | + | chr6_4:27234353-27234372 | Msa0983880:intron | 40.0% | |
! | CTTTTCTGTGCAGATGTAAG+TGG | + | chr6_4:27234572-27234591 | Msa0983880:intron | 40.0% |
ATAGAGTGGTATGGATAGGA+AGG | + | chr6_4:27234607-27234626 | Msa0983880:intron | 40.0% | |
TATGGATAGGAAGGATTCTG+AGG | + | chr6_4:27234616-27234635 | Msa0983880:intron | 40.0% | |
! | GGATTCTGAGGAATCTGTAA+TGG | + | chr6_4:27234628-27234647 | Msa0983880:intron | 40.0% |
GTTATTTATAGACTCGGCCT+AGG | + | chr6_4:27234686-27234705 | Msa0983880:intron | 40.0% | |
TATTTATAGACTCGGCCTAG+GGG | + | chr6_4:27234688-27234707 | Msa0983880:intron | 40.0% | |
CTAACAATTAAGTCACCCCT+AGG | - | chr6_4:27234706-27234725 | None:intergenic | 40.0% | |
TGAACACCTAGGAAAGATGT+TGG | - | chr6_4:27234855-27234874 | None:intergenic | 40.0% | |
CATGTAGGTATTTGCAGACA+TGG | + | chr6_4:27235305-27235324 | Msa0983880:intron | 40.0% | |
AGTTCTGTTGTCTCAATGGT+TGG | + | chr6_4:27235351-27235370 | Msa0983880:CDS | 40.0% | |
! | AAGGAAAGCGTGTAAGAATC+AGG | + | chr6_4:27235463-27235482 | Msa0983880:CDS | 40.0% |
! | AGGAAAGCGTGTAAGAATCA+GGG | + | chr6_4:27235464-27235483 | Msa0983880:CDS | 40.0% |
ACGAAATTCAGGCTTAAGAG+AGG | + | chr6_4:27235542-27235561 | Msa0983880:CDS | 40.0% | |
!! | GAACAGGATGCCGATTTAAT+AGG | + | chr6_4:27235612-27235631 | Msa0983880:CDS | 40.0% |
TTTCTGTTGGCCATTGATGT+TGG | + | chr6_4:27235735-27235754 | Msa0983880:three_prime_UTR | 40.0% | |
ATGTAAGCCTGAGAATTTGG+TGG | + | chr6_4:27235854-27235873 | Msa0983880:three_prime_UTR | 40.0% | |
!! | ATGTAAGGTTGGTGTGGAAG+TGG | - | chr6_4:27231662-27231681 | None:intergenic | 45.0% |
! | ACTTGCTGCTGATGTAAGGT+TGG | - | chr6_4:27231673-27231692 | None:intergenic | 45.0% |
!! | TTCGACTTGCTGCTGATGTA+AGG | - | chr6_4:27231677-27231696 | None:intergenic | 45.0% |
!! | GAAAGCATTACTGCTTGTGG+CGG | - | chr6_4:27231768-27231787 | None:intergenic | 45.0% |
ACTCGAGGATATCTTGGTCT+TGG | - | chr6_4:27231968-27231987 | None:intergenic | 45.0% | |
GACCAAGATATCCTCGAGTT+TGG | + | chr6_4:27231969-27231988 | Msa0983880:CDS | 45.0% | |
!! | TATATGTGTCGGTGTCATGC+CGG | - | chr6_4:27232449-27232468 | None:intergenic | 45.0% |
TGTCGATAGCGAATGACAGA+TGG | + | chr6_4:27232694-27232713 | Msa0983880:intron | 45.0% | |
!! | TATGACCTAGTCTTTTGGGG+TGG | + | chr6_4:27232791-27232810 | Msa0983880:intron | 45.0% |
CGGAAAAGCTACTTATTGGC+TGG | + | chr6_4:27232871-27232890 | Msa0983880:intron | 45.0% | |
CCTTCACAAATTTCTCACGC+TGG | - | chr6_4:27232968-27232987 | None:intergenic | 45.0% | |
CCAGCGTGAGAAATTTGTGA+AGG | + | chr6_4:27232965-27232984 | Msa0983880:intron | 45.0% | |
CGATTGCAAATGGCAGAACA+TGG | - | chr6_4:27233052-27233071 | None:intergenic | 45.0% | |
! | CTGACCATGTGGTAGCTTTT+TGG | - | chr6_4:27233124-27233143 | None:intergenic | 45.0% |
CTCTATCAACACTGACCATG+TGG | - | chr6_4:27233135-27233154 | None:intergenic | 45.0% | |
GTAAAATCCGTCGTGGATGT+CGG | + | chr6_4:27233154-27233173 | Msa0983880:intron | 45.0% | |
CAATGTTATGAGTTCCACGC+CGG | + | chr6_4:27233192-27233211 | Msa0983880:intron | 45.0% | |
! | AAAGACTAGCCACTAAGAGC+CGG | - | chr6_4:27233214-27233233 | None:intergenic | 45.0% |
CTCTTGATACCTATGTCGCT+TGG | + | chr6_4:27233398-27233417 | Msa0983880:CDS | 45.0% | |
!! | TTCTAGTTCCCAAGCGACAT+AGG | - | chr6_4:27233410-27233429 | None:intergenic | 45.0% |
!! | GCTCTGAAGCTATCCAAAGA+AGG | - | chr6_4:27233634-27233653 | None:intergenic | 45.0% |
TGGATGTTAAGCAAGGGTCA+AGG | + | chr6_4:27233701-27233720 | Msa0983880:CDS | 45.0% | |
CAAGGGTCAAGGAAAGACAA+TGG | + | chr6_4:27233712-27233731 | Msa0983880:CDS | 45.0% | |
TTGACGAAGCAGAAGAGCTT+TGG | + | chr6_4:27233780-27233799 | Msa0983880:CDS | 45.0% | |
CAGTGCTACATAACCAAGAC+AGG | + | chr6_4:27234132-27234151 | Msa0983880:intron | 45.0% | |
! | TCAGCTAAGGGCTATTTCAG+GGG | - | chr6_4:27234197-27234216 | None:intergenic | 45.0% |
! | GTTCAGCTAAGGGCTATTTC+AGG | - | chr6_4:27234199-27234218 | None:intergenic | 45.0% |
AACAGAGGCAGAAAAGGGAT+AGG | + | chr6_4:27234331-27234350 | Msa0983880:intron | 45.0% | |
AGGCAGAAAAGGGATAGGAT+AGG | + | chr6_4:27234336-27234355 | Msa0983880:intron | 45.0% | |
TGCTGCAGATTTCCTGGAAA+TGG | + | chr6_4:27234409-27234428 | Msa0983880:intron | 45.0% | |
TCACGTCTTACTCCATTTCC+AGG | - | chr6_4:27234424-27234443 | None:intergenic | 45.0% | |
GAAATGGAGTAAGACGTGAG+TGG | + | chr6_4:27234425-27234444 | Msa0983880:intron | 45.0% | |
! | CAAACACCGAGTTTTTCTCG+AGG | + | chr6_4:27234892-27234911 | Msa0983880:intron | 45.0% |
GGACTTCCTCGAGAAAAACT+CGG | - | chr6_4:27234901-27234920 | None:intergenic | 45.0% | |
TCCAAACCAAGGAGAGGATA+GGG | + | chr6_4:27234918-27234937 | Msa0983880:intron | 45.0% | |
AAGGAGAGGATAGGGGTTTA+GGG | + | chr6_4:27234926-27234945 | Msa0983880:intron | 45.0% | |
TAAACATACGGCTCTGTCCT+TGG | + | chr6_4:27235027-27235046 | Msa0983880:intron | 45.0% | |
GTAGGTATTTGCAGACATGG+AGG | + | chr6_4:27235308-27235327 | Msa0983880:intron | 45.0% | |
GGAAATGTCTTCAAGGAGCT+AGG | + | chr6_4:27235372-27235391 | Msa0983880:CDS | 45.0% | |
CTTCAAGGAGCTAGGTATGA+TGG | + | chr6_4:27235380-27235399 | Msa0983880:CDS | 45.0% | |
CTATATTCCCATTGTGGTGG+TGG | - | chr6_4:27235435-27235454 | None:intergenic | 45.0% | |
GGACGATGAACAATTCGAAC+AGG | + | chr6_4:27235596-27235615 | Msa0983880:CDS | 45.0% | |
!! | GGATGCCGATTTAATAGGCA+TGG | + | chr6_4:27235617-27235636 | Msa0983880:CDS | 45.0% |
CTTACCTCGTAACAGCATGT+AGG | - | chr6_4:27235794-27235813 | None:intergenic | 45.0% | |
CTACATGCTGTTACGAGGTA+AGG | + | chr6_4:27235792-27235811 | Msa0983880:three_prime_UTR | 45.0% | |
CGAGGTAAGGTGAAGACATT+AGG | + | chr6_4:27235805-27235824 | Msa0983880:three_prime_UTR | 45.0% | |
ATGGCTACCACCAAATTCTC+AGG | - | chr6_4:27235864-27235883 | None:intergenic | 45.0% | |
!!! | ATTTTTATGATTTTATTATA+AGG | + | chr6_4:27231922-27231941 | Msa0983880:intron | 5.0% |
GGTGTGGAAGTGGATGATGA+TGG | - | chr6_4:27231652-27231671 | None:intergenic | 50.0% | |
!! | CTGCTGATGTAAGGTTGGTG+TGG | - | chr6_4:27231668-27231687 | None:intergenic | 50.0% |
!! | TTACGGCCAGGTTTGGGTTT+TGG | - | chr6_4:27231718-27231737 | None:intergenic | 50.0% |
CGAGATTTACGGCCAGGTTT+GGG | - | chr6_4:27231724-27231743 | None:intergenic | 50.0% | |
CCAAACCTGGCCGTAAATCT+CGG | + | chr6_4:27231722-27231741 | Msa0983880:five_prime_UTR | 50.0% | |
CAAACCTGGCCGTAAATCTC+GGG | + | chr6_4:27231723-27231742 | Msa0983880:five_prime_UTR | 50.0% | |
CTAACTCCGCCCGAGATTTA+CGG | - | chr6_4:27231735-27231754 | None:intergenic | 50.0% | |
TGGGTACATGTGTCGAACAC+CGG | + | chr6_4:27232198-27232217 | Msa0983880:intron | 50.0% | |
ACACGGCATGTGTTCGACAT+CGG | - | chr6_4:27232420-27232439 | None:intergenic | 50.0% | |
AAGTCACTGTGTCCTTTGGC+AGG | + | chr6_4:27232738-27232757 | Msa0983880:intron | 50.0% | |
AGTCACTGTGTCCTTTGGCA+GGG | + | chr6_4:27232739-27232758 | Msa0983880:intron | 50.0% | |
AGAGACCACCCCAAAAGACT+AGG | - | chr6_4:27232799-27232818 | None:intergenic | 50.0% | |
! | TTTGGGGTGGTCTCTTTCCA+CGG | + | chr6_4:27232804-27232823 | Msa0983880:intron | 50.0% |
TTAAGAGCCGACATCCACGA+CGG | - | chr6_4:27233164-27233183 | None:intergenic | 50.0% | |
!! | GTGGATGTCGGCTCTTAAAG+AGG | + | chr6_4:27233166-27233185 | Msa0983880:intron | 50.0% |
!! | GATGTCGGCTCTTAAAGAGG+TGG | + | chr6_4:27233169-27233188 | Msa0983880:intron | 50.0% |
GCTCTTCTGCTTCGTCAACT+CGG | - | chr6_4:27233778-27233797 | None:intergenic | 50.0% | |
CAGGATTGCTGCAGATTTCC+TGG | + | chr6_4:27234403-27234422 | Msa0983880:intron | 50.0% | |
GGAGTAAGACGTGAGTGGAA+TGG | + | chr6_4:27234430-27234449 | Msa0983880:intron | 50.0% | |
GTAAGACGTGAGTGGAATGG+AGG | + | chr6_4:27234433-27234452 | Msa0983880:intron | 50.0% | |
TCTCGAGGAAGTCCAAACCA+AGG | + | chr6_4:27234907-27234926 | Msa0983880:intron | 50.0% | |
AGGAAGTCCAAACCAAGGAG+AGG | + | chr6_4:27234912-27234931 | Msa0983880:intron | 50.0% | |
GTCCAAACCAAGGAGAGGAT+AGG | + | chr6_4:27234917-27234936 | Msa0983880:intron | 50.0% | |
CCAAACCAAGGAGAGGATAG+GGG | + | chr6_4:27234919-27234938 | Msa0983880:intron | 50.0% | |
CTAAACCCCTATCCTCTCCT+TGG | - | chr6_4:27234927-27234946 | None:intergenic | 50.0% | |
CAAGGAGAGGATAGGGGTTT+AGG | + | chr6_4:27234925-27234944 | Msa0983880:intron | 50.0% | |
CGTGTAAGAATCAGGGTGCA+AGG | + | chr6_4:27235471-27235490 | Msa0983880:CDS | 50.0% | |
GACTCCTACATGCTGTTACG+AGG | + | chr6_4:27235787-27235806 | Msa0983880:three_prime_UTR | 50.0% | |
ACTGTGGACTTCGCCATTTC+AGG | - | chr6_4:27235944-27235963 | None:intergenic | 50.0% | |
CCGAGATTTACGGCCAGGTT+TGG | - | chr6_4:27231725-27231744 | None:intergenic | 55.0% | |
AGCATTACTGCTTGTGGCGG+TGG | - | chr6_4:27231765-27231784 | None:intergenic | 55.0% | |
ACACATGCCGTGTCCAACAC+CGG | + | chr6_4:27232427-27232446 | Msa0983880:intron | 55.0% | |
! | TGTCATGCCGGTGTTGGACA+CGG | - | chr6_4:27232437-27232456 | None:intergenic | 55.0% |
CATGGACATCGGACACGACA+CGG | - | chr6_4:27232514-27232533 | None:intergenic | 55.0% | |
TAGTGAAGGGATGTCCGCCA+TGG | - | chr6_4:27232765-27232784 | None:intergenic | 55.0% | |
TTGGGGTGGTCTCTTTCCAC+GGG | + | chr6_4:27232805-27232824 | Msa0983880:intron | 55.0% | |
TCCAACACTGCGATCCAGCA+TGG | - | chr6_4:27232934-27232953 | None:intergenic | 55.0% | |
CCCCTATCCTCTCCTTGGTT+TGG | - | chr6_4:27234922-27234941 | None:intergenic | 55.0% | |
GAGAGGATAGGGGTTTAGGG+AGG | + | chr6_4:27234929-27234948 | Msa0983880:intron | 55.0% | |
TGCCCGCCAAAACCCAAACC+TGG | + | chr6_4:27231709-27231728 | Msa0983880:five_prime_UTR | 60.0% | |
!! | GGCCAGGTTTGGGTTTTGGC+GGG | - | chr6_4:27231714-27231733 | None:intergenic | 60.0% |
!! | CGGCCAGGTTTGGGTTTTGG+CGG | - | chr6_4:27231715-27231734 | None:intergenic | 60.0% |
ACCTGGCCGTAAATCTCGGG+CGG | + | chr6_4:27231726-27231745 | Msa0983880:five_prime_UTR | 60.0% | |
!! | TGTCGGTGTCATGCCGGTGT+TGG | - | chr6_4:27232443-27232462 | None:intergenic | 60.0% |
TGTGTCCTTTGGCAGGGCCA+TGG | + | chr6_4:27232745-27232764 | Msa0983880:intron | 60.0% | |
GCCATGCTGGATCGCAGTGT+TGG | + | chr6_4:27232930-27232949 | Msa0983880:intron | 60.0% | |
TGTGAAGGATGCCGGCACCA+TGG | + | chr6_4:27232980-27232999 | Msa0983880:intron | 60.0% | |
!! | AGTTCCACGCCGGCTCTTAG+TGG | + | chr6_4:27233202-27233221 | Msa0983880:intron | 60.0% |
TCCGCCCGAGATTTACGGCC+AGG | - | chr6_4:27231730-27231749 | None:intergenic | 65.0% | |
CTGCTTGTGGCGGTGGCTGA+TGG | - | chr6_4:27231758-27231777 | None:intergenic | 65.0% | |
GTCCTTTGGCAGGGCCATGG+CGG | + | chr6_4:27232748-27232767 | Msa0983880:intron | 65.0% | |
CTAGCCACTAAGAGCCGGCG+TGG | - | chr6_4:27233209-27233228 | None:intergenic | 65.0% | |
GTCCGCCATGGCCCTGCCAA+AGG | - | chr6_4:27232753-27232772 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 27231607 | 27236236 | 27231607 | ID=Msa0983880;Name=Msa0983880 |
chr6_4 | mRNA | 27231607 | 27236236 | 27231607 | ID=Msa0983880-mRNA-1;Parent=Msa0983880;Name=Msa0983880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=173|0.5|0.6|1|0.5|0.6|5|538|289 |
chr6_4 | exon | 27231607 | 27231860 | 27231607 | ID=Msa0983880-mRNA-1:exon:7734;Parent=Msa0983880-mRNA-1 |
chr6_4 | exon | 27231944 | 27232036 | 27231944 | ID=Msa0983880-mRNA-1:exon:7735;Parent=Msa0983880-mRNA-1 |
chr6_4 | exon | 27233358 | 27233453 | 27233358 | ID=Msa0983880-mRNA-1:exon:7736;Parent=Msa0983880-mRNA-1 |
chr6_4 | exon | 27233692 | 27233904 | 27233692 | ID=Msa0983880-mRNA-1:exon:7737;Parent=Msa0983880-mRNA-1 |
chr6_4 | exon | 27235312 | 27236236 | 27235312 | ID=Msa0983880-mRNA-1:exon:7738;Parent=Msa0983880-mRNA-1 |
chr6_4 | five_prime_UTR | 27231607 | 27231779 | 27231607 | ID=Msa0983880-mRNA-1:five_prime_utr;Parent=Msa0983880-mRNA-1 |
chr6_4 | CDS | 27231780 | 27231860 | 27231780 | ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1 |
chr6_4 | CDS | 27231944 | 27232036 | 27231944 | ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1 |
chr6_4 | CDS | 27233358 | 27233453 | 27233358 | ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1 |
chr6_4 | CDS | 27233692 | 27233904 | 27233692 | ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1 |
chr6_4 | CDS | 27235312 | 27235698 | 27235312 | ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1 |
chr6_4 | three_prime_UTR | 27235699 | 27236236 | 27235699 | ID=Msa0983880-mRNA-1:three_prime_utr;Parent=Msa0983880-mRNA-1 |
Gene Sequence |
Protein sequence |