AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0983880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983880 MtrunA17_Chr6g0470101 88.961 308 11 3 1 289 51 354 0.0 521
Msa0983880 MtrunA17_Chr3g0086601 41.791 201 97 3 41 222 75 274 2.93e-44 151
Msa0983880 MtrunA17_Chr5g0398991 34.615 156 85 2 63 201 81 236 1.19e-25 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0983880 AT4G21190.1 65.158 221 58 2 20 221 23 243 5.32e-102 300
Msa0983880 AT4G18975.2 44.162 197 90 3 42 219 58 253 4.50e-49 164
Msa0983880 AT4G18975.3 44.162 197 90 3 42 219 85 280 9.32e-49 164
Msa0983880 AT4G18975.4 44.162 197 90 3 42 219 85 280 9.32e-49 164
Msa0983880 AT4G18975.1 44.162 197 90 3 42 219 85 280 9.32e-49 164
Msa0983880 AT1G04590.1 34.615 182 99 3 40 201 131 312 7.46e-26 105
Msa0983880 AT1G04590.2 34.595 185 98 4 40 201 131 315 2.01e-24 101

Find 101 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGTGGACTTCGCCATTTC+AGG 0.183949 6_4:-27235941 None:intergenic
ACGTATCTATCAACTTTATT+AGG 0.201297 6_4:-27235498 None:intergenic
TCCTATAATTACAGTGAAAA+AGG 0.241597 6_4:+27233432 Msa0983880:CDS
TTACGGCCAGGTTTGGGTTT+TGG 0.249976 6_4:-27231715 None:intergenic
TGGTAGCCATTTCATTTATA+AGG 0.263319 6_4:+27235874 Msa0983880:three_prime_UTR
AAAATGTAAGCCTGAGAATT+TGG 0.265784 6_4:+27235851 Msa0983880:three_prime_UTR
GACAATGTTCAACGAAATTC+AGG 0.282692 6_4:+27235531 Msa0983880:CDS
AATGTCAAAGAAGAAGTTTA+TGG 0.291907 6_4:+27233373 Msa0983880:CDS
AGATGAGTCATCTGAGTTTA+CGG 0.299452 6_4:+27235656 Msa0983880:CDS
CCGAGATTTACGGCCAGGTT+TGG 0.305873 6_4:-27231722 None:intergenic
GAACAGGATGCCGATTTAAT+AGG 0.309673 6_4:+27235612 Msa0983880:CDS
CTTCAATTCAGCATTGATAC+TGG 0.319784 6_4:-27235990 None:intergenic
AATGCATATAGGCTTTGATT+AGG 0.320445 6_4:+27236076 Msa0983880:three_prime_UTR
TACACACAAAATCATTATTT+CGG 0.321174 6_4:+27235759 Msa0983880:three_prime_UTR
TTTCCTGAATGCATAATATA+TGG 0.334719 6_4:+27236034 Msa0983880:three_prime_UTR
CTAACTCCGCCCGAGATTTA+CGG 0.342115 6_4:-27231732 None:intergenic
TCTCCATATATTATGCATTC+AGG 0.344803 6_4:-27236037 None:intergenic
AAGGAAAGCGTGTAAGAATC+AGG 0.347993 6_4:+27235463 Msa0983880:CDS
TGAAACTATAGGTAACAAAA+TGG 0.351629 6_4:+27233681 Msa0983880:intron
GACCAAGATATCCTCGAGTT+TGG 0.361562 6_4:+27231969 Msa0983880:CDS
TGACTCATCTGAAATTTGTT+TGG 0.365964 6_4:-27235643 None:intergenic
CGAGATTTACGGCCAGGTTT+GGG 0.373990 6_4:-27231721 None:intergenic
TTGACGAAGCAGAAGAGCTT+TGG 0.377250 6_4:+27233780 Msa0983880:CDS
TATTTGATATGTTAATTTGT+TGG 0.381277 6_4:-27231824 None:intergenic
GGTTTCCATGCCTATTAAAT+CGG 0.386492 6_4:-27235622 None:intergenic
AAGTGGATGATGATGGATTT+GGG 0.389153 6_4:-27231642 None:intergenic
ATGCATATAGGCTTTGATTA+GGG 0.389204 6_4:+27236077 Msa0983880:three_prime_UTR
CGAGGTAAGGTGAAGACATT+AGG 0.390237 6_4:+27235805 Msa0983880:three_prime_UTR
GAAGTGGATGATGATGGATT+TGG 0.396162 6_4:-27231643 None:intergenic
TAGTAGTTCTGTTGTCTCAA+TGG 0.409178 6_4:+27235347 Msa0983880:CDS
TTCCAAACTCGAGGATATCT+TGG 0.417267 6_4:-27231971 None:intergenic
TGATATCCTTATAAATGAAA+TGG 0.417527 6_4:-27235880 None:intergenic
AGAAGAGACTTCAGAGTTAA+CGG 0.420834 6_4:+27235575 Msa0983880:CDS
TCTACTTCAGATTCCTGAAA+TGG 0.427650 6_4:+27235928 Msa0983880:three_prime_UTR
AAGGTATTTGCTGCTGCAAA+AGG 0.436480 6_4:+27231941 Msa0983880:intron
TGAATTGAAGTTGGGTACTT+TGG 0.441846 6_4:+27236003 Msa0983880:three_prime_UTR
CCAAACCTGGCCGTAAATCT+CGG 0.445698 6_4:+27231722 Msa0983880:five_prime_UTR
CTGCTTGTGGCGGTGGCTGA+TGG 0.447414 6_4:-27231755 None:intergenic
GCATAATATATGGAGATTGT+AGG 0.449323 6_4:+27236044 Msa0983880:three_prime_UTR
CTATATTCCCATTGTGGTGG+TGG 0.450226 6_4:-27235432 None:intergenic
AAAATATCCACCACCACAAT+GGG 0.452410 6_4:+27235425 Msa0983880:CDS
ACTCGAGGATATCTTGGTCT+TGG 0.456302 6_4:-27231965 None:intergenic
TTCGACTTGCTGCTGATGTA+AGG 0.458742 6_4:-27231674 None:intergenic
CTCTTGATACCTATGTCGCT+TGG 0.459035 6_4:+27233398 Msa0983880:CDS
AGCATTACTGCTTGTGGCGG+TGG 0.467846 6_4:-27231762 None:intergenic
TATCAATGCTGAATTGAAGT+TGG 0.470532 6_4:+27235994 Msa0983880:three_prime_UTR
ATGTAAGGTTGGTGTGGAAG+TGG 0.475787 6_4:-27231659 None:intergenic
CATGTAGGTATTTGCAGACA+TGG 0.476328 6_4:+27235305 Msa0983880:intron
GGACGATGAACAATTCGAAC+AGG 0.477783 6_4:+27235596 Msa0983880:CDS
TCCGCCCGAGATTTACGGCC+AGG 0.477901 6_4:-27231727 None:intergenic
AGTTCTGTTGTCTCAATGGT+TGG 0.480356 6_4:+27235351 Msa0983880:CDS
AATGGTTGGAAATGTCTTCA+AGG 0.484077 6_4:+27235365 Msa0983880:CDS
GATATGTTAATTTGTTGGTA+TGG 0.485734 6_4:-27231819 None:intergenic
CTTCAAGGAGCTAGGTATGA+TGG 0.487411 6_4:+27235380 Msa0983880:CDS
CATAATATATGGAGATTGTA+GGG 0.487894 6_4:+27236045 Msa0983880:three_prime_UTR
ATATCTATCTACTGTAAAAG+AGG 0.491255 6_4:+27233860 Msa0983880:CDS
ATCAATGCTGAATTGAAGTT+GGG 0.492173 6_4:+27235995 Msa0983880:three_prime_UTR
CTTGCATGATAAGATGTTTG+AGG 0.498325 6_4:+27233883 Msa0983880:CDS
TCTTGATACCTATGTCGCTT+GGG 0.501458 6_4:+27233399 Msa0983880:CDS
CAAACCTGGCCGTAAATCTC+GGG 0.502020 6_4:+27231723 Msa0983880:five_prime_UTR
GAAGTTCTGTGTTATACTGT+TGG 0.504569 6_4:+27236109 Msa0983880:three_prime_UTR
AACAAAATGGATGTTAAGCA+AGG 0.507980 6_4:+27233694 Msa0983880:CDS
ATGGCTACCACCAAATTCTC+AGG 0.509342 6_4:-27235861 None:intergenic
TTGTGTGTAACCAACATCAA+TGG 0.511366 6_4:-27235745 None:intergenic
TCTCGTTATACATCTAAACT+TGG 0.517938 6_4:-27235681 None:intergenic
CTACATGCTGTTACGAGGTA+AGG 0.523242 6_4:+27235792 Msa0983880:three_prime_UTR
ATTGAGACAACAGAACTACT+AGG 0.527919 6_4:-27235345 None:intergenic
TGCCCGCCAAAACCCAAACC+TGG 0.542227 6_4:+27231709 Msa0983880:five_prime_UTR
GCTCTTCTGCTTCGTCAACT+CGG 0.545541 6_4:-27233775 None:intergenic
TTTCTGTTGGCCATTGATGT+TGG 0.548156 6_4:+27235735 Msa0983880:three_prime_UTR
TGATAGATACGTAAGAAAGC+AGG 0.551062 6_4:+27235509 Msa0983880:CDS
ACTTGCTGCTGATGTAAGGT+TGG 0.552667 6_4:-27231670 None:intergenic
ACTAACAGATAAGTTTCTGT+TGG 0.553495 6_4:+27235722 Msa0983880:three_prime_UTR
GATGTATAACGAGAGAAAGA+TGG 0.554815 6_4:+27235690 Msa0983880:exon
TTCTAGTTCCCAAGCGACAT+AGG 0.558781 6_4:-27233407 None:intergenic
CTGCTGATGTAAGGTTGGTG+TGG 0.558823 6_4:-27231665 None:intergenic
GGATGCCGATTTAATAGGCA+TGG 0.559417 6_4:+27235617 Msa0983880:CDS
ATGTATCTATATTCCCATTG+TGG 0.561013 6_4:-27235438 None:intergenic
AAGGGTCAAGGAAAGACAAT+GGG 0.563191 6_4:+27233713 Msa0983880:CDS
TTATTAGTCTTCCAAACTCG+AGG 0.571818 6_4:-27231980 None:intergenic
GAACATAACAACTTATACTG+TGG 0.577110 6_4:-27235957 None:intergenic
GGAAATGTCTTCAAGGAGCT+AGG 0.581726 6_4:+27235372 Msa0983880:CDS
ATTACTTAATGCTTTAGCAG+AGG 0.581952 6_4:+27233748 Msa0983880:CDS
ATGTAAGCCTGAGAATTTGG+TGG 0.593101 6_4:+27235854 Msa0983880:three_prime_UTR
GGTGTGGAAGTGGATGATGA+TGG 0.594460 6_4:-27231649 None:intergenic
CGTGTAAGAATCAGGGTGCA+AGG 0.595586 6_4:+27235471 Msa0983880:CDS
ACGAAATTCAGGCTTAAGAG+AGG 0.595718 6_4:+27235542 Msa0983880:CDS
TGGGAATATAGATACATCAA+AGG 0.609942 6_4:+27235444 Msa0983880:CDS
AGGAAAGCGTGTAAGAATCA+GGG 0.610217 6_4:+27235464 Msa0983880:CDS
TGGATGTTAAGCAAGGGTCA+AGG 0.625921 6_4:+27233701 Msa0983880:CDS
TATCTATATTCCCATTGTGG+TGG 0.627567 6_4:-27235435 None:intergenic
CTTACCTCGTAACAGCATGT+AGG 0.629695 6_4:-27235791 None:intergenic
TATGGTTTAGCAATAAGTAG+AGG 0.629980 6_4:-27231801 None:intergenic
ACAAAATGGATGTTAAGCAA+GGG 0.632530 6_4:+27233695 Msa0983880:CDS
CAAGGGTCAAGGAAAGACAA+TGG 0.634494 6_4:+27233712 Msa0983880:CDS
GACTCCTACATGCTGTTACG+AGG 0.640590 6_4:+27235787 Msa0983880:three_prime_UTR
ACCTGGCCGTAAATCTCGGG+CGG 0.643892 6_4:+27231726 Msa0983880:five_prime_UTR
AGTGAAAGCATTACTGCTTG+TGG 0.656125 6_4:-27231768 None:intergenic
AAAGTTGTTAATGCAGTACA+CGG 0.674701 6_4:+27233805 Msa0983880:CDS
GAAAGCATTACTGCTTGTGG+CGG 0.705239 6_4:-27231765 None:intergenic
GTAGGTATTTGCAGACATGG+AGG 0.706718 6_4:+27235308 Msa0983880:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGTAAAAAGATTAATT+TGG + chr6_4:27231607-27231626 Msa0983880:five_prime_UTR 10.0%
!! AAAATAATTACTCAAATTTA+AGG - chr6_4:27233967-27233986 None:intergenic 10.0%
!! TTATATATATTCTGTAAATA+TGG + chr6_4:27234109-27234128 Msa0983880:intron 10.0%
!!! TATTTGATATGTTAATTTGT+TGG - chr6_4:27231827-27231846 None:intergenic 15.0%
!! AATAACTAAGTAGTTATTTA+TGG + chr6_4:27234761-27234780 Msa0983880:intron 15.0%
!!! TTGAAACTAATATTTTAGTT+CGG + chr6_4:27235120-27235139 Msa0983880:intron 15.0%
!! TGGAAGACTAATAAAAAAAT+TGG + chr6_4:27231989-27232008 Msa0983880:CDS 20.0%
!!! AAAAATTGGAACTATTTCTA+AGG + chr6_4:27232003-27232022 Msa0983880:CDS 20.0%
!! TAAATTTAATAACATGTGTG+TGG + chr6_4:27232178-27232197 Msa0983880:intron 20.0%
!! AAATTTAATAACATGTGTGT+GGG + chr6_4:27232179-27232198 Msa0983880:intron 20.0%
!! AATCTTAGTAGTTTATACTT+TGG + chr6_4:27232580-27232599 Msa0983880:intron 20.0%
!! AATGAACATAAAAAATCACA+AGG - chr6_4:27233530-27233549 None:intergenic 20.0%
!!! AAATTACTTTCTGAAACTAT+AGG + chr6_4:27233670-27233689 Msa0983880:intron 20.0%
!! TTGTATATTCAAAGTTCAAA+TGG + chr6_4:27234019-27234038 Msa0983880:intron 20.0%
!! AAAGCTATTAGAGTAAAAAT+AGG + chr6_4:27234065-27234084 Msa0983880:intron 20.0%
!! ATTTGCATGTTTACTATATT+AGG - chr6_4:27234821-27234840 None:intergenic 20.0%
!! TTTCTTAAGAAGTAAACATA+CGG + chr6_4:27235015-27235034 Msa0983880:intron 20.0%
!! ATTATTATTATGTGCTTTAG+TGG - chr6_4:27235221-27235240 None:intergenic 20.0%
!! ACAAACAAATGTTGTTAATA+TGG + chr6_4:27235248-27235267 Msa0983880:intron 20.0%
!! TACACACAAAATCATTATTT+CGG + chr6_4:27235759-27235778 Msa0983880:three_prime_UTR 20.0%
!! TGATATCCTTATAAATGAAA+TGG - chr6_4:27235883-27235902 None:intergenic 20.0%
!!! GTATAATTGTTTTTGTATCA+AGG - chr6_4:27236187-27236206 None:intergenic 20.0%
!!! GATATGTTAATTTGTTGGTA+TGG - chr6_4:27231822-27231841 None:intergenic 25.0%
!!! TCCTTAGTTCTATAGTTTTT+AGG + chr6_4:27231874-27231893 Msa0983880:intron 25.0%
!!! CCTTAGTTCTATAGTTTTTA+GGG + chr6_4:27231875-27231894 Msa0983880:intron 25.0%
!! ATGTCTTAGATAAAAAGTGT+TGG + chr6_4:27232223-27232242 Msa0983880:intron 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr6_4:27232460-27232479 None:intergenic 25.0%
!!! AAAAATTGGTGTTTTTGTTG+AGG + chr6_4:27232838-27232857 Msa0983880:intron 25.0%
!!! AAAATTGGTGTTTTTGTTGA+GGG + chr6_4:27232839-27232858 Msa0983880:intron 25.0%
! ATTACCGAGTTGTAAAATAT+TGG + chr6_4:27232908-27232927 Msa0983880:intron 25.0%
! AATGTCAAAGAAGAAGTTTA+TGG + chr6_4:27233373-27233392 Msa0983880:CDS 25.0%
! TCCTATAATTACAGTGAAAA+AGG + chr6_4:27233432-27233451 Msa0983880:CDS 25.0%
!!! ACCTTTTTCACTGTAATTAT+AGG - chr6_4:27233436-27233455 None:intergenic 25.0%
! TGAAACTATAGGTAACAAAA+TGG + chr6_4:27233681-27233700 Msa0983880:intron 25.0%
!! ATTTTATCAAAGAATCTACG+TGG - chr6_4:27233839-27233858 None:intergenic 25.0%
! ATATCTATCTACTGTAAAAG+AGG + chr6_4:27233860-27233879 Msa0983880:CDS 25.0%
! TCAAATGGCAAAATATACAT+TGG + chr6_4:27234034-27234053 Msa0983880:intron 25.0%
!!! TTTTTTCAGCATATTTCCAA+TGG - chr6_4:27234253-27234272 None:intergenic 25.0%
! GGAAATATGCTGAAAAAAAA+AGG + chr6_4:27234255-27234274 Msa0983880:intron 25.0%
! AAATAACTGAATGAAAACAG+AGG + chr6_4:27234316-27234335 Msa0983880:intron 25.0%
! AAAAATCAAATAGAGTGGTA+TGG + chr6_4:27234598-27234617 Msa0983880:intron 25.0%
!!! AGTGTTGTTATTTATAGACT+CGG + chr6_4:27234680-27234699 Msa0983880:intron 25.0%
! ACAAATGTTGTTAATATGGA+TGG + chr6_4:27235252-27235271 Msa0983880:intron 25.0%
! AATTGAGTAAAATATTGAGC+CGG - chr6_4:27235282-27235301 None:intergenic 25.0%
!! TTTTACTCAATTTCTCATGT+AGG + chr6_4:27235290-27235309 Msa0983880:intron 25.0%
! ACGTATCTATCAACTTTATT+AGG - chr6_4:27235501-27235520 None:intergenic 25.0%
! TTTCCTGAATGCATAATATA+TGG + chr6_4:27236034-27236053 Msa0983880:three_prime_UTR 25.0%
! CATAATATATGGAGATTGTA+GGG + chr6_4:27236045-27236064 Msa0983880:three_prime_UTR 25.0%
TATGGTTTAGCAATAAGTAG+AGG - chr6_4:27231804-27231823 None:intergenic 30.0%
CCCTAAAAACTATAGAACTA+AGG - chr6_4:27231878-27231897 None:intergenic 30.0%
!! CTTTTTATCTAAGACATGTC+CGG - chr6_4:27232220-27232239 None:intergenic 30.0%
!!! GACACAGTGACTTTTTTATA+TGG - chr6_4:27232731-27232750 None:intergenic 30.0%
! ATTTTTATGACTTTAACCCG+TGG - chr6_4:27232824-27232843 None:intergenic 30.0%
CGGGTTAAAGTCATAAAAAT+TGG + chr6_4:27232824-27232843 Msa0983880:intron 30.0%
! ATGGCCAATATTTTACAACT+CGG - chr6_4:27232915-27232934 None:intergenic 30.0%
!!! CACCATGGTGTTTTATTTTA+TGG + chr6_4:27232995-27233014 Msa0983880:intron 30.0%
!!! CATGGTGTTTTATTTTATGG+CGG + chr6_4:27232998-27233017 Msa0983880:intron 30.0%
! TATTTTATGGCGGTTCAAAA+TGG + chr6_4:27233008-27233027 Msa0983880:intron 30.0%
TTTATGTTCAACTCTCTTCA+TGG + chr6_4:27233232-27233251 Msa0983880:intron 30.0%
TTATGTTCAACTCTCTTCAT+GGG + chr6_4:27233233-27233252 Msa0983880:intron 30.0%
AACAAAATGGATGTTAAGCA+AGG + chr6_4:27233694-27233713 Msa0983880:CDS 30.0%
ACAAAATGGATGTTAAGCAA+GGG + chr6_4:27233695-27233714 Msa0983880:CDS 30.0%
ATTACTTAATGCTTTAGCAG+AGG + chr6_4:27233748-27233767 Msa0983880:CDS 30.0%
AAAGTTGTTAATGCAGTACA+CGG + chr6_4:27233805-27233824 Msa0983880:CDS 30.0%
ATGAAACGAAGATGTTCATT+CGG + chr6_4:27234170-27234189 Msa0983880:intron 30.0%
TATGCTGAAAAAAAAAGGAG+AGG + chr6_4:27234260-27234279 Msa0983880:intron 30.0%
GAAAGAAACCAAAAACATAG+AGG + chr6_4:27234282-27234301 Msa0983880:intron 30.0%
AAAAGACTTGACAAATACTC+AGG + chr6_4:27234384-27234403 Msa0983880:intron 30.0%
GGCAAAAAAATCAAATAGAG+TGG + chr6_4:27234593-27234612 Msa0983880:intron 30.0%
!! TTTAATCAGTAGCTTTAGTG+TGG + chr6_4:27234962-27234981 Msa0983880:intron 30.0%
ACAATCCAGTACTATATTCT+AGG - chr6_4:27235054-27235073 None:intergenic 30.0%
AAAGTTGTTACAGTAGATGA+CGG + chr6_4:27235093-27235112 Msa0983880:intron 30.0%
TTTCTTGCAGTCAGTTATTT+CGG - chr6_4:27235161-27235180 None:intergenic 30.0%
TGTTAATATGGATGGAATTC+CGG + chr6_4:27235260-27235279 Msa0983880:intron 30.0%
ATGTATCTATATTCCCATTG+TGG - chr6_4:27235441-27235460 None:intergenic 30.0%
TGGGAATATAGATACATCAA+AGG + chr6_4:27235444-27235463 Msa0983880:CDS 30.0%
! TGACTCATCTGAAATTTGTT+TGG - chr6_4:27235646-27235665 None:intergenic 30.0%
TCTCGTTATACATCTAAACT+TGG - chr6_4:27235684-27235703 None:intergenic 30.0%
ACTAACAGATAAGTTTCTGT+TGG + chr6_4:27235722-27235741 Msa0983880:three_prime_UTR 30.0%
AAAATGTAAGCCTGAGAATT+TGG + chr6_4:27235851-27235870 Msa0983880:three_prime_UTR 30.0%
TGGTAGCCATTTCATTTATA+AGG + chr6_4:27235874-27235893 Msa0983880:three_prime_UTR 30.0%
GAACATAACAACTTATACTG+TGG - chr6_4:27235960-27235979 None:intergenic 30.0%
TATCAATGCTGAATTGAAGT+TGG + chr6_4:27235994-27236013 Msa0983880:three_prime_UTR 30.0%
ATCAATGCTGAATTGAAGTT+GGG + chr6_4:27235995-27236014 Msa0983880:three_prime_UTR 30.0%
TCTCCATATATTATGCATTC+AGG - chr6_4:27236040-27236059 None:intergenic 30.0%
GCATAATATATGGAGATTGT+AGG + chr6_4:27236044-27236063 Msa0983880:three_prime_UTR 30.0%
! AATGCATATAGGCTTTGATT+AGG + chr6_4:27236076-27236095 Msa0983880:three_prime_UTR 30.0%
! ATGCATATAGGCTTTGATTA+GGG + chr6_4:27236077-27236096 Msa0983880:three_prime_UTR 30.0%
!! AAGTGGATGATGATGGATTT+GGG - chr6_4:27231645-27231664 None:intergenic 35.0%
!! TTATTAGTCTTCCAAACTCG+AGG - chr6_4:27231983-27232002 None:intergenic 35.0%
TATTCGAGAAAATAGCGTGT+TGG + chr6_4:27232309-27232328 Msa0983880:intron 35.0%
! GCTTCATAGCTTTTGATCAA+AGG - chr6_4:27232370-27232389 None:intergenic 35.0%
! CTCTTTTGATCTATGAAGCA+CGG - chr6_4:27232544-27232563 None:intergenic 35.0%
GCTTCATAGATCAAAAGAGT+CGG + chr6_4:27232545-27232564 Msa0983880:intron 35.0%
ACTACCATATCACAACTAGT+GGG - chr6_4:27232609-27232628 None:intergenic 35.0%
TACTACCATATCACAACTAG+TGG - chr6_4:27232610-27232629 None:intergenic 35.0%
TATGGTAGTAGTACTCTTTG+TGG + chr6_4:27232620-27232639 Msa0983880:intron 35.0%
AAAAAAGTCACTGTGTCCTT+TGG + chr6_4:27232734-27232753 Msa0983880:intron 35.0%
GGTCATAGACAAATAGTGAA+GGG - chr6_4:27232778-27232797 None:intergenic 35.0%
AGGTCATAGACAAATAGTGA+AGG - chr6_4:27232779-27232798 None:intergenic 35.0%
!! TTGTCTATGACCTAGTCTTT+TGG + chr6_4:27232786-27232805 Msa0983880:intron 35.0%
!! TGTCTATGACCTAGTCTTTT+GGG + chr6_4:27232787-27232806 Msa0983880:intron 35.0%
GTTACGGAAAAGCTACTTAT+TGG + chr6_4:27232867-27232886 Msa0983880:intron 35.0%
TTGTAAAATATTGGCCATGC+TGG + chr6_4:27232917-27232936 Msa0983880:intron 35.0%
AAAATAAAACACCATGGTGC+CGG - chr6_4:27232994-27233013 None:intergenic 35.0%
CGCCATAAAATAAAACACCA+TGG - chr6_4:27233000-27233019 None:intergenic 35.0%
AATGGCAGAACATGGTAAAA+AGG - chr6_4:27233044-27233063 None:intergenic 35.0%
AATTCCAAAAAGCTACCACA+TGG + chr6_4:27233117-27233136 Msa0983880:intron 35.0%
!! ACCTTAAGCTGATTTTTCCT+TGG + chr6_4:27233289-27233308 Msa0983880:intron 35.0%
TCCAAGGAAAAATCAGCTTA+AGG - chr6_4:27233293-27233312 None:intergenic 35.0%
!! CTCTAGAATACGAGAAAGAA+TGG + chr6_4:27233464-27233483 Msa0983880:intron 35.0%
AATACGAGAAAGAATGGAAG+CGG + chr6_4:27233470-27233489 Msa0983880:intron 35.0%
! GCTGATTTATGTTCCTTCTT+TGG + chr6_4:27233618-27233637 Msa0983880:intron 35.0%
CTTGCATGATAAGATGTTTG+AGG + chr6_4:27233883-27233902 Msa0983880:CDS 35.0%
! TTTCATCAATTAGCCTGTCT+TGG - chr6_4:27234148-27234167 None:intergenic 35.0%
TCTTAATGGTGTTCAGCTAA+GGG - chr6_4:27234209-27234228 None:intergenic 35.0%
TTCTTAATGGTGTTCAGCTA+AGG - chr6_4:27234210-27234229 None:intergenic 35.0%
!! TAGTCTTACTGGCTTCTTAA+TGG - chr6_4:27234223-27234242 None:intergenic 35.0%
! ATGGAATACAGTAGTCTTAC+TGG - chr6_4:27234234-27234253 None:intergenic 35.0%
GTAAGACTACTGTATTCCAT+TGG + chr6_4:27234234-27234253 Msa0983880:intron 35.0%
AACCAAAAACATAGAGGAAG+AGG + chr6_4:27234288-27234307 Msa0983880:intron 35.0%
! TTCCTCTTCCTCTATGTTTT+TGG - chr6_4:27234293-27234312 None:intergenic 35.0%
AAAACATAGAGGAAGAGGAA+AGG + chr6_4:27234293-27234312 Msa0983880:intron 35.0%
AATGAAAACAGAGGCAGAAA+AGG + chr6_4:27234325-27234344 Msa0983880:intron 35.0%
ATGAAAACAGAGGCAGAAAA+GGG + chr6_4:27234326-27234345 Msa0983880:intron 35.0%
TCAAATAGAGTGGTATGGAT+AGG + chr6_4:27234603-27234622 Msa0983880:intron 35.0%
GGAATGATTGATCGTTACAT+TGG + chr6_4:27234649-27234668 Msa0983880:intron 35.0%
TTATTTATAGACTCGGCCTA+GGG + chr6_4:27234687-27234706 Msa0983880:intron 35.0%
AATACTCCAACATCTTTCCT+AGG + chr6_4:27234846-27234865 Msa0983880:intron 35.0%
TCAGACTAAATTGAACACCT+AGG - chr6_4:27234866-27234885 None:intergenic 35.0%
!! AGTACTATATTCTAGGACCA+AGG - chr6_4:27235047-27235066 None:intergenic 35.0%
TTGGTCCTAGAATATAGTAC+TGG + chr6_4:27235046-27235065 Msa0983880:intron 35.0%
! GAATATAGTACTGGATTGTG+CGG + chr6_4:27235055-27235074 Msa0983880:intron 35.0%
! AATATAGTACTGGATTGTGC+GGG + chr6_4:27235056-27235075 Msa0983880:intron 35.0%
! TTAGTTCGGTGAGAAATCAT+TGG + chr6_4:27235134-27235153 Msa0983880:intron 35.0%
GAAATAACTACAGCTATGTG+AGG + chr6_4:27235177-27235196 Msa0983880:intron 35.0%
ATTGAGACAACAGAACTACT+AGG - chr6_4:27235348-27235367 None:intergenic 35.0%
! TAGTAGTTCTGTTGTCTCAA+TGG + chr6_4:27235347-27235366 Msa0983880:CDS 35.0%
AATGGTTGGAAATGTCTTCA+AGG + chr6_4:27235365-27235384 Msa0983880:CDS 35.0%
AAAAATATCCACCACCACAA+TGG + chr6_4:27235424-27235443 Msa0983880:CDS 35.0%
AAAATATCCACCACCACAAT+GGG + chr6_4:27235425-27235444 Msa0983880:CDS 35.0%
TATCTATATTCCCATTGTGG+TGG - chr6_4:27235438-27235457 None:intergenic 35.0%
TGATAGATACGTAAGAAAGC+AGG + chr6_4:27235509-27235528 Msa0983880:CDS 35.0%
GACAATGTTCAACGAAATTC+AGG + chr6_4:27235531-27235550 Msa0983880:CDS 35.0%
AGAAGAGACTTCAGAGTTAA+CGG + chr6_4:27235575-27235594 Msa0983880:CDS 35.0%
GGTTTCCATGCCTATTAAAT+CGG - chr6_4:27235625-27235644 None:intergenic 35.0%
AGATGAGTCATCTGAGTTTA+CGG + chr6_4:27235656-27235675 Msa0983880:CDS 35.0%
GATGTATAACGAGAGAAAGA+TGG + chr6_4:27235690-27235709 Msa0983880:exon 35.0%
TTGTGTGTAACCAACATCAA+TGG - chr6_4:27235748-27235767 None:intergenic 35.0%
TCTACTTCAGATTCCTGAAA+TGG + chr6_4:27235928-27235947 Msa0983880:three_prime_UTR 35.0%
!! CTTCAATTCAGCATTGATAC+TGG - chr6_4:27235993-27236012 None:intergenic 35.0%
TGAATTGAAGTTGGGTACTT+TGG + chr6_4:27236003-27236022 Msa0983880:three_prime_UTR 35.0%
! GGGTGATTTTCAATGCATAT+AGG + chr6_4:27236065-27236084 Msa0983880:three_prime_UTR 35.0%
GAAGTTCTGTGTTATACTGT+TGG + chr6_4:27236109-27236128 Msa0983880:three_prime_UTR 35.0%
!! GAAGTGGATGATGATGGATT+TGG - chr6_4:27231646-27231665 None:intergenic 40.0%
!! AGTGAAAGCATTACTGCTTG+TGG - chr6_4:27231771-27231790 None:intergenic 40.0%
! AAGGTATTTGCTGCTGCAAA+AGG + chr6_4:27231941-27231960 Msa0983880:intron 40.0%
TTCCAAACTCGAGGATATCT+TGG - chr6_4:27231974-27231993 None:intergenic 40.0%
AAACGAATATAGCGAACGCA+AGG - chr6_4:27232059-27232078 None:intergenic 40.0%
TGACACTAATACATCGACAC+TGG + chr6_4:27232282-27232301 Msa0983880:intron 40.0%
! AGAAAATAGCGTGTTGGTGT+AGG + chr6_4:27232315-27232334 Msa0983880:intron 40.0%
TATGAAGCACAGACACTTCT+CGG + chr6_4:27232382-27232401 Msa0983880:intron 40.0%
ACGGATATAGACATGGACAT+CGG - chr6_4:27232525-27232544 None:intergenic 40.0%
ATGAAGCACGGATATAGACA+TGG - chr6_4:27232532-27232551 None:intergenic 40.0%
GTTTCCCACTAGTTGTGATA+TGG + chr6_4:27232602-27232621 Msa0983880:intron 40.0%
!! GTCTATGACCTAGTCTTTTG+GGG + chr6_4:27232788-27232807 Msa0983880:intron 40.0%
!! TGGTGTTTTTGTTGAGGGTT+TGG + chr6_4:27232844-27232863 Msa0983880:intron 40.0%
!! GGTGTTTTTGTTGAGGGTTT+GGG + chr6_4:27232845-27232864 Msa0983880:intron 40.0%
! TTTGTTGAGGGTTTGGGTTA+CGG + chr6_4:27232851-27232870 Msa0983880:intron 40.0%
GAGAAATTTGTGAAGGATGC+CGG + chr6_4:27232972-27232991 Msa0983880:intron 40.0%
TTTATGGCGGTTCAAAATGG+TGG + chr6_4:27233011-27233030 Msa0983880:intron 40.0%
! ATAGCGTTGTCGATTGCAAA+TGG - chr6_4:27233062-27233081 None:intergenic 40.0%
!!! TGGTAGCTTTTTGGAATTCG+TGG - chr6_4:27233115-27233134 None:intergenic 40.0%
TGATAGAGTAAAATCCGTCG+TGG + chr6_4:27233147-27233166 Msa0983880:intron 40.0%
CCAGAATTGCAAATCATCCA+AGG - chr6_4:27233309-27233328 None:intergenic 40.0%
! CCTTGGATGATTTGCAATTC+TGG + chr6_4:27233306-27233325 Msa0983880:intron 40.0%
! TCTTGATACCTATGTCGCTT+GGG + chr6_4:27233399-27233418 Msa0983880:CDS 40.0%
AGAATGGAAGCGGATAATAC+AGG + chr6_4:27233480-27233499 Msa0983880:intron 40.0%
AAGGGTCAAGGAAAGACAAT+GGG + chr6_4:27233713-27233732 Msa0983880:CDS 40.0%
! TTCAGCTAAGGGCTATTTCA+GGG - chr6_4:27234198-27234217 None:intergenic 40.0%
GATAGGATATGAGCGAACAA+AGG + chr6_4:27234353-27234372 Msa0983880:intron 40.0%
! CTTTTCTGTGCAGATGTAAG+TGG + chr6_4:27234572-27234591 Msa0983880:intron 40.0%
ATAGAGTGGTATGGATAGGA+AGG + chr6_4:27234607-27234626 Msa0983880:intron 40.0%
TATGGATAGGAAGGATTCTG+AGG + chr6_4:27234616-27234635 Msa0983880:intron 40.0%
! GGATTCTGAGGAATCTGTAA+TGG + chr6_4:27234628-27234647 Msa0983880:intron 40.0%
GTTATTTATAGACTCGGCCT+AGG + chr6_4:27234686-27234705 Msa0983880:intron 40.0%
TATTTATAGACTCGGCCTAG+GGG + chr6_4:27234688-27234707 Msa0983880:intron 40.0%
CTAACAATTAAGTCACCCCT+AGG - chr6_4:27234706-27234725 None:intergenic 40.0%
TGAACACCTAGGAAAGATGT+TGG - chr6_4:27234855-27234874 None:intergenic 40.0%
CATGTAGGTATTTGCAGACA+TGG + chr6_4:27235305-27235324 Msa0983880:intron 40.0%
AGTTCTGTTGTCTCAATGGT+TGG + chr6_4:27235351-27235370 Msa0983880:CDS 40.0%
! AAGGAAAGCGTGTAAGAATC+AGG + chr6_4:27235463-27235482 Msa0983880:CDS 40.0%
! AGGAAAGCGTGTAAGAATCA+GGG + chr6_4:27235464-27235483 Msa0983880:CDS 40.0%
ACGAAATTCAGGCTTAAGAG+AGG + chr6_4:27235542-27235561 Msa0983880:CDS 40.0%
!! GAACAGGATGCCGATTTAAT+AGG + chr6_4:27235612-27235631 Msa0983880:CDS 40.0%
TTTCTGTTGGCCATTGATGT+TGG + chr6_4:27235735-27235754 Msa0983880:three_prime_UTR 40.0%
ATGTAAGCCTGAGAATTTGG+TGG + chr6_4:27235854-27235873 Msa0983880:three_prime_UTR 40.0%
!! ATGTAAGGTTGGTGTGGAAG+TGG - chr6_4:27231662-27231681 None:intergenic 45.0%
! ACTTGCTGCTGATGTAAGGT+TGG - chr6_4:27231673-27231692 None:intergenic 45.0%
!! TTCGACTTGCTGCTGATGTA+AGG - chr6_4:27231677-27231696 None:intergenic 45.0%
!! GAAAGCATTACTGCTTGTGG+CGG - chr6_4:27231768-27231787 None:intergenic 45.0%
ACTCGAGGATATCTTGGTCT+TGG - chr6_4:27231968-27231987 None:intergenic 45.0%
GACCAAGATATCCTCGAGTT+TGG + chr6_4:27231969-27231988 Msa0983880:CDS 45.0%
!! TATATGTGTCGGTGTCATGC+CGG - chr6_4:27232449-27232468 None:intergenic 45.0%
TGTCGATAGCGAATGACAGA+TGG + chr6_4:27232694-27232713 Msa0983880:intron 45.0%
!! TATGACCTAGTCTTTTGGGG+TGG + chr6_4:27232791-27232810 Msa0983880:intron 45.0%
CGGAAAAGCTACTTATTGGC+TGG + chr6_4:27232871-27232890 Msa0983880:intron 45.0%
CCTTCACAAATTTCTCACGC+TGG - chr6_4:27232968-27232987 None:intergenic 45.0%
CCAGCGTGAGAAATTTGTGA+AGG + chr6_4:27232965-27232984 Msa0983880:intron 45.0%
CGATTGCAAATGGCAGAACA+TGG - chr6_4:27233052-27233071 None:intergenic 45.0%
! CTGACCATGTGGTAGCTTTT+TGG - chr6_4:27233124-27233143 None:intergenic 45.0%
CTCTATCAACACTGACCATG+TGG - chr6_4:27233135-27233154 None:intergenic 45.0%
GTAAAATCCGTCGTGGATGT+CGG + chr6_4:27233154-27233173 Msa0983880:intron 45.0%
CAATGTTATGAGTTCCACGC+CGG + chr6_4:27233192-27233211 Msa0983880:intron 45.0%
! AAAGACTAGCCACTAAGAGC+CGG - chr6_4:27233214-27233233 None:intergenic 45.0%
CTCTTGATACCTATGTCGCT+TGG + chr6_4:27233398-27233417 Msa0983880:CDS 45.0%
!! TTCTAGTTCCCAAGCGACAT+AGG - chr6_4:27233410-27233429 None:intergenic 45.0%
!! GCTCTGAAGCTATCCAAAGA+AGG - chr6_4:27233634-27233653 None:intergenic 45.0%
TGGATGTTAAGCAAGGGTCA+AGG + chr6_4:27233701-27233720 Msa0983880:CDS 45.0%
CAAGGGTCAAGGAAAGACAA+TGG + chr6_4:27233712-27233731 Msa0983880:CDS 45.0%
TTGACGAAGCAGAAGAGCTT+TGG + chr6_4:27233780-27233799 Msa0983880:CDS 45.0%
CAGTGCTACATAACCAAGAC+AGG + chr6_4:27234132-27234151 Msa0983880:intron 45.0%
! TCAGCTAAGGGCTATTTCAG+GGG - chr6_4:27234197-27234216 None:intergenic 45.0%
! GTTCAGCTAAGGGCTATTTC+AGG - chr6_4:27234199-27234218 None:intergenic 45.0%
AACAGAGGCAGAAAAGGGAT+AGG + chr6_4:27234331-27234350 Msa0983880:intron 45.0%
AGGCAGAAAAGGGATAGGAT+AGG + chr6_4:27234336-27234355 Msa0983880:intron 45.0%
TGCTGCAGATTTCCTGGAAA+TGG + chr6_4:27234409-27234428 Msa0983880:intron 45.0%
TCACGTCTTACTCCATTTCC+AGG - chr6_4:27234424-27234443 None:intergenic 45.0%
GAAATGGAGTAAGACGTGAG+TGG + chr6_4:27234425-27234444 Msa0983880:intron 45.0%
! CAAACACCGAGTTTTTCTCG+AGG + chr6_4:27234892-27234911 Msa0983880:intron 45.0%
GGACTTCCTCGAGAAAAACT+CGG - chr6_4:27234901-27234920 None:intergenic 45.0%
TCCAAACCAAGGAGAGGATA+GGG + chr6_4:27234918-27234937 Msa0983880:intron 45.0%
AAGGAGAGGATAGGGGTTTA+GGG + chr6_4:27234926-27234945 Msa0983880:intron 45.0%
TAAACATACGGCTCTGTCCT+TGG + chr6_4:27235027-27235046 Msa0983880:intron 45.0%
GTAGGTATTTGCAGACATGG+AGG + chr6_4:27235308-27235327 Msa0983880:intron 45.0%
GGAAATGTCTTCAAGGAGCT+AGG + chr6_4:27235372-27235391 Msa0983880:CDS 45.0%
CTTCAAGGAGCTAGGTATGA+TGG + chr6_4:27235380-27235399 Msa0983880:CDS 45.0%
CTATATTCCCATTGTGGTGG+TGG - chr6_4:27235435-27235454 None:intergenic 45.0%
GGACGATGAACAATTCGAAC+AGG + chr6_4:27235596-27235615 Msa0983880:CDS 45.0%
!! GGATGCCGATTTAATAGGCA+TGG + chr6_4:27235617-27235636 Msa0983880:CDS 45.0%
CTTACCTCGTAACAGCATGT+AGG - chr6_4:27235794-27235813 None:intergenic 45.0%
CTACATGCTGTTACGAGGTA+AGG + chr6_4:27235792-27235811 Msa0983880:three_prime_UTR 45.0%
CGAGGTAAGGTGAAGACATT+AGG + chr6_4:27235805-27235824 Msa0983880:three_prime_UTR 45.0%
ATGGCTACCACCAAATTCTC+AGG - chr6_4:27235864-27235883 None:intergenic 45.0%
!!! ATTTTTATGATTTTATTATA+AGG + chr6_4:27231922-27231941 Msa0983880:intron 5.0%
GGTGTGGAAGTGGATGATGA+TGG - chr6_4:27231652-27231671 None:intergenic 50.0%
!! CTGCTGATGTAAGGTTGGTG+TGG - chr6_4:27231668-27231687 None:intergenic 50.0%
!! TTACGGCCAGGTTTGGGTTT+TGG - chr6_4:27231718-27231737 None:intergenic 50.0%
CGAGATTTACGGCCAGGTTT+GGG - chr6_4:27231724-27231743 None:intergenic 50.0%
CCAAACCTGGCCGTAAATCT+CGG + chr6_4:27231722-27231741 Msa0983880:five_prime_UTR 50.0%
CAAACCTGGCCGTAAATCTC+GGG + chr6_4:27231723-27231742 Msa0983880:five_prime_UTR 50.0%
CTAACTCCGCCCGAGATTTA+CGG - chr6_4:27231735-27231754 None:intergenic 50.0%
TGGGTACATGTGTCGAACAC+CGG + chr6_4:27232198-27232217 Msa0983880:intron 50.0%
ACACGGCATGTGTTCGACAT+CGG - chr6_4:27232420-27232439 None:intergenic 50.0%
AAGTCACTGTGTCCTTTGGC+AGG + chr6_4:27232738-27232757 Msa0983880:intron 50.0%
AGTCACTGTGTCCTTTGGCA+GGG + chr6_4:27232739-27232758 Msa0983880:intron 50.0%
AGAGACCACCCCAAAAGACT+AGG - chr6_4:27232799-27232818 None:intergenic 50.0%
! TTTGGGGTGGTCTCTTTCCA+CGG + chr6_4:27232804-27232823 Msa0983880:intron 50.0%
TTAAGAGCCGACATCCACGA+CGG - chr6_4:27233164-27233183 None:intergenic 50.0%
!! GTGGATGTCGGCTCTTAAAG+AGG + chr6_4:27233166-27233185 Msa0983880:intron 50.0%
!! GATGTCGGCTCTTAAAGAGG+TGG + chr6_4:27233169-27233188 Msa0983880:intron 50.0%
GCTCTTCTGCTTCGTCAACT+CGG - chr6_4:27233778-27233797 None:intergenic 50.0%
CAGGATTGCTGCAGATTTCC+TGG + chr6_4:27234403-27234422 Msa0983880:intron 50.0%
GGAGTAAGACGTGAGTGGAA+TGG + chr6_4:27234430-27234449 Msa0983880:intron 50.0%
GTAAGACGTGAGTGGAATGG+AGG + chr6_4:27234433-27234452 Msa0983880:intron 50.0%
TCTCGAGGAAGTCCAAACCA+AGG + chr6_4:27234907-27234926 Msa0983880:intron 50.0%
AGGAAGTCCAAACCAAGGAG+AGG + chr6_4:27234912-27234931 Msa0983880:intron 50.0%
GTCCAAACCAAGGAGAGGAT+AGG + chr6_4:27234917-27234936 Msa0983880:intron 50.0%
CCAAACCAAGGAGAGGATAG+GGG + chr6_4:27234919-27234938 Msa0983880:intron 50.0%
CTAAACCCCTATCCTCTCCT+TGG - chr6_4:27234927-27234946 None:intergenic 50.0%
CAAGGAGAGGATAGGGGTTT+AGG + chr6_4:27234925-27234944 Msa0983880:intron 50.0%
CGTGTAAGAATCAGGGTGCA+AGG + chr6_4:27235471-27235490 Msa0983880:CDS 50.0%
GACTCCTACATGCTGTTACG+AGG + chr6_4:27235787-27235806 Msa0983880:three_prime_UTR 50.0%
ACTGTGGACTTCGCCATTTC+AGG - chr6_4:27235944-27235963 None:intergenic 50.0%
CCGAGATTTACGGCCAGGTT+TGG - chr6_4:27231725-27231744 None:intergenic 55.0%
AGCATTACTGCTTGTGGCGG+TGG - chr6_4:27231765-27231784 None:intergenic 55.0%
ACACATGCCGTGTCCAACAC+CGG + chr6_4:27232427-27232446 Msa0983880:intron 55.0%
! TGTCATGCCGGTGTTGGACA+CGG - chr6_4:27232437-27232456 None:intergenic 55.0%
CATGGACATCGGACACGACA+CGG - chr6_4:27232514-27232533 None:intergenic 55.0%
TAGTGAAGGGATGTCCGCCA+TGG - chr6_4:27232765-27232784 None:intergenic 55.0%
TTGGGGTGGTCTCTTTCCAC+GGG + chr6_4:27232805-27232824 Msa0983880:intron 55.0%
TCCAACACTGCGATCCAGCA+TGG - chr6_4:27232934-27232953 None:intergenic 55.0%
CCCCTATCCTCTCCTTGGTT+TGG - chr6_4:27234922-27234941 None:intergenic 55.0%
GAGAGGATAGGGGTTTAGGG+AGG + chr6_4:27234929-27234948 Msa0983880:intron 55.0%
TGCCCGCCAAAACCCAAACC+TGG + chr6_4:27231709-27231728 Msa0983880:five_prime_UTR 60.0%
!! GGCCAGGTTTGGGTTTTGGC+GGG - chr6_4:27231714-27231733 None:intergenic 60.0%
!! CGGCCAGGTTTGGGTTTTGG+CGG - chr6_4:27231715-27231734 None:intergenic 60.0%
ACCTGGCCGTAAATCTCGGG+CGG + chr6_4:27231726-27231745 Msa0983880:five_prime_UTR 60.0%
!! TGTCGGTGTCATGCCGGTGT+TGG - chr6_4:27232443-27232462 None:intergenic 60.0%
TGTGTCCTTTGGCAGGGCCA+TGG + chr6_4:27232745-27232764 Msa0983880:intron 60.0%
GCCATGCTGGATCGCAGTGT+TGG + chr6_4:27232930-27232949 Msa0983880:intron 60.0%
TGTGAAGGATGCCGGCACCA+TGG + chr6_4:27232980-27232999 Msa0983880:intron 60.0%
!! AGTTCCACGCCGGCTCTTAG+TGG + chr6_4:27233202-27233221 Msa0983880:intron 60.0%
TCCGCCCGAGATTTACGGCC+AGG - chr6_4:27231730-27231749 None:intergenic 65.0%
CTGCTTGTGGCGGTGGCTGA+TGG - chr6_4:27231758-27231777 None:intergenic 65.0%
GTCCTTTGGCAGGGCCATGG+CGG + chr6_4:27232748-27232767 Msa0983880:intron 65.0%
CTAGCCACTAAGAGCCGGCG+TGG - chr6_4:27233209-27233228 None:intergenic 65.0%
GTCCGCCATGGCCCTGCCAA+AGG - chr6_4:27232753-27232772 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 27231607 27236236 27231607 ID=Msa0983880;Name=Msa0983880
chr6_4 mRNA 27231607 27236236 27231607 ID=Msa0983880-mRNA-1;Parent=Msa0983880;Name=Msa0983880-mRNA-1;_AED=0.09;_eAED=0.09;_QI=173|0.5|0.6|1|0.5|0.6|5|538|289
chr6_4 exon 27231607 27231860 27231607 ID=Msa0983880-mRNA-1:exon:7734;Parent=Msa0983880-mRNA-1
chr6_4 exon 27231944 27232036 27231944 ID=Msa0983880-mRNA-1:exon:7735;Parent=Msa0983880-mRNA-1
chr6_4 exon 27233358 27233453 27233358 ID=Msa0983880-mRNA-1:exon:7736;Parent=Msa0983880-mRNA-1
chr6_4 exon 27233692 27233904 27233692 ID=Msa0983880-mRNA-1:exon:7737;Parent=Msa0983880-mRNA-1
chr6_4 exon 27235312 27236236 27235312 ID=Msa0983880-mRNA-1:exon:7738;Parent=Msa0983880-mRNA-1
chr6_4 five_prime_UTR 27231607 27231779 27231607 ID=Msa0983880-mRNA-1:five_prime_utr;Parent=Msa0983880-mRNA-1
chr6_4 CDS 27231780 27231860 27231780 ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1
chr6_4 CDS 27231944 27232036 27231944 ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1
chr6_4 CDS 27233358 27233453 27233358 ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1
chr6_4 CDS 27233692 27233904 27233692 ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1
chr6_4 CDS 27235312 27235698 27235312 ID=Msa0983880-mRNA-1:cds;Parent=Msa0983880-mRNA-1
chr6_4 three_prime_UTR 27235699 27236236 27235699 ID=Msa0983880-mRNA-1:three_prime_utr;Parent=Msa0983880-mRNA-1
Gene Sequence

>Msa0983880

ATGCTTTCACTCATTAATTCGCCTCTACTTATTGCTAAACCATACCAACAAATTAACATATCAAATAAACGAAGCATTGTTGTATTTGCTGCTGCAAAAGGTCCAAGACCAAGATATCCTCGAGTTTGGAAGACTAATAAAAAAATTGGAACTATTTCTAAGGCTGCTAAGCTTATTAAAGAACTTTCAAATGTCAAAGAAGAAGTTTATGGAGCTCTTGATACCTATGTCGCTTGGGAACTAGAATTTCCTATAATTACAGTGAAAAAGGTAACAAAATGGATGTTAAGCAAGGGTCAAGGAAAGACAATGGGAAGCTATTTTACATTACTTAATGCTTTAGCAGAGGATGACCGAGTTGACGAAGCAGAAGAGCTTTGGACAAAGTTGTTAATGCAGTACACGGAAAGCTTGCCACGTAGATTCTTTGATAAAATGATATCTATCTACTGTAAAAGAGGCTTGCATGATAAGATGTTTGAGGTATTTGCAGACATGGAGGAGCTCAGTGTTAAACCTAGTAGTTCTGTTGTCTCAATGGTTGGAAATGTCTTCAAGGAGCTAGGTATGATGGATAAATACGAGAAGTTACATCAAAAATATCCACCACCACAATGGGAATATAGATACATCAAAGGAAAGCGTGTAAGAATCAGGGTGCAAGGTCAGCCTAATAAAGTTGATAGATACGTAAGAAAGCAGGACAATGTTCAACGAAATTCAGGCTTAAGAGAGGAAGATAGTTCAGAAGAGACTTCAGAGTTAACGGACGATGAACAATTCGAACAGGATGCCGATTTAATAGGCATGGAAACCAAACAAATTTCAGATGAGTCATCTGAGTTTACGGAACCAAGTTTAGATGTATAA

Protein sequence

>Msa0983880

MLSLINSPLLIAKPYQQINISNKRSIVVFAAAKGPRPRYPRVWKTNKKIGTISKAAKLIKELSNVKEEVYGALDTYVAWELEFPIITVKKVTKWMLSKGQGKTMGSYFTLLNALAEDDRVDEAEELWTKLLMQYTESLPRRFFDKMISIYCKRGLHDKMFEVFADMEELSVKPSSSVVSMVGNVFKELGMMDKYEKLHQKYPPPQWEYRYIKGKRVRIRVQGQPNKVDRYVRKQDNVQRNSGLREEDSSEETSELTDDEQFEQDADLIGMETKQISDESSEFTEPSLDV*