AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68960.t1 MTR_2g025120 88.278 273 30 2 2 273 37 308 4.06e-177 491
MS.gene68960.t1 MTR_3g083370 76.512 281 62 2 1 280 36 313 1.79e-159 446
MS.gene68960.t1 MTR_5g085330 74.638 276 67 2 1 275 37 310 2.20e-154 433
MS.gene68960.t1 MTR_2g025120 90.909 187 17 0 2 188 37 223 1.40e-121 347
MS.gene68960.t1 MTR_3g083370 79.787 188 38 0 1 188 36 223 6.86e-110 317
MS.gene68960.t1 MTR_4g132770 97.826 138 3 0 119 256 24 161 2.34e-97 283
MS.gene68960.t1 MTR_3g088565 53.191 282 113 6 1 271 35 308 2.82e-93 278
MS.gene68960.t1 MTR_6g092620 48.708 271 125 5 3 269 37 297 3.07e-86 260
MS.gene68960.t1 MTR_4g132765 91.406 128 10 1 1 128 36 162 1.27e-64 218
MS.gene68960.t1 MTR_5g082750 36.101 277 166 5 1 270 84 356 3.32e-53 177
MS.gene68960.t1 MTR_3g070860 35.740 277 167 5 1 270 85 357 1.89e-51 172
MS.gene68960.t1 MTR_7g068650 36.201 279 164 5 1 270 89 362 3.06e-50 169
MS.gene68960.t1 MTR_4g015790 34.545 275 170 4 1 268 97 368 3.88e-49 167
MS.gene68960.t1 MTR_3g092890 34.109 258 154 6 1 249 67 317 1.24e-45 157
MS.gene68960.t1 MTR_3g063180 36.803 269 148 10 1 253 74 336 7.29e-44 152
MS.gene68960.t1 MTR_8g024120 34.470 264 144 7 1 249 74 323 7.96e-43 149
MS.gene68960.t1 MTR_0009s0050 30.970 268 173 4 1 261 78 340 8.41e-42 147
MS.gene68960.t1 MTR_5g055680 31.227 269 171 5 1 261 78 340 8.59e-42 147
MS.gene68960.t1 MTR_0009s0050 30.970 268 173 4 1 261 78 340 8.79e-42 147
MS.gene68960.t1 MTR_2g072890 30.224 268 175 5 1 261 85 347 1.11e-41 147
MS.gene68960.t1 MTR_4g116010 34.728 239 147 3 2 233 80 316 1.18e-41 147
MS.gene68960.t1 MTR_8g074050 32.841 271 167 7 1 263 85 348 8.57e-41 144
MS.gene68960.t1 MTR_8g064200 28.889 270 176 5 1 261 84 346 8.66e-41 144
MS.gene68960.t1 MTR_8g064200 28.889 270 176 5 1 261 89 351 9.62e-41 144
MS.gene68960.t1 MTR_5g048570 30.597 268 174 5 1 261 76 338 1.00e-40 144
MS.gene68960.t1 MTR_3g117420 32.971 276 169 8 2 269 86 353 1.00e-40 144
MS.gene68960.t1 MTR_7g016090 33.813 278 159 10 1 267 68 331 1.99e-40 143
MS.gene68960.t1 MTR_7g016090 33.813 278 159 10 1 267 70 333 2.24e-40 143
MS.gene68960.t1 MTR_5g048550 29.740 269 175 5 1 261 78 340 2.51e-40 143
MS.gene68960.t1 MTR_1g033810 34.034 238 147 5 1 231 80 314 4.20e-40 142
MS.gene68960.t1 MTR_1g070080 35.833 240 137 6 1 230 70 302 4.33e-40 142
MS.gene68960.t1 MTR_5g048470 28.519 270 177 5 1 261 85 347 1.60e-39 141
MS.gene68960.t1 MTR_2g437380 32.975 279 154 7 1 261 85 348 1.79e-39 141
MS.gene68960.t1 MTR_0056s0160 31.718 227 146 4 38 261 5 225 2.21e-39 137
MS.gene68960.t1 MTR_5g032880 38.916 203 117 4 51 251 122 319 2.97e-39 145
MS.gene68960.t1 MTR_5g032880 40.437 183 104 3 51 231 468 647 4.85e-36 136
MS.gene68960.t1 MTR_7g062580 31.970 269 169 5 1 261 86 348 3.36e-39 140
MS.gene68960.t1 MTR_0009s0050 31.950 241 156 4 23 261 8 242 3.83e-39 137
MS.gene68960.t1 MTR_0009s0050 31.950 241 156 4 23 261 8 242 5.49e-39 137
MS.gene68960.t1 MTR_7g062550 31.970 269 169 5 1 261 91 353 6.92e-39 140
MS.gene68960.t1 MTR_1g070135 32.197 264 158 7 1 253 70 323 7.78e-39 139
MS.gene68960.t1 MTR_7g062570 31.136 273 166 6 1 261 86 348 1.48e-38 139
MS.gene68960.t1 MTR_0328s0030 30.000 270 173 6 1 261 76 338 1.52e-38 138
MS.gene68960.t1 MTR_2g072910 30.612 245 150 4 1 233 84 320 6.38e-38 137
MS.gene68960.t1 MTR_5g055690 29.368 269 177 4 1 261 78 341 6.40e-38 137
MS.gene68960.t1 MTR_5g055820 31.301 246 144 4 1 231 78 313 6.47e-38 137
MS.gene68960.t1 MTR_5g032870 35.366 246 140 6 1 233 72 311 9.49e-38 136
MS.gene68960.t1 MTR_5g005570 32.443 262 144 8 1 251 72 311 1.47e-37 135
MS.gene68960.t1 MTR_5g055900 29.478 268 177 4 1 261 78 340 2.28e-37 135
MS.gene68960.t1 MTR_8g009080 34.836 244 140 7 1 233 128 363 3.46e-37 136
MS.gene68960.t1 MTR_2g437380 32.714 269 148 7 11 261 1 254 7.83e-37 132
MS.gene68960.t1 MTR_5g011250 34.568 243 148 4 1 233 82 323 1.07e-36 134
MS.gene68960.t1 MTR_0009s0480 31.250 240 151 5 1 231 77 311 2.12e-36 133
MS.gene68960.t1 MTR_8g074070 32.780 241 151 6 1 233 85 322 2.64e-36 132
MS.gene68960.t1 MTR_2g069090 33.921 227 135 4 1 219 102 321 4.21e-36 132
MS.gene68960.t1 MTR_7g062600 30.741 270 172 6 1 261 82 345 4.50e-36 132
MS.gene68960.t1 MTR_2g083030 31.008 258 151 7 1 249 71 310 5.16e-36 131
MS.gene68960.t1 MTR_6g015950 32.374 278 166 8 1 268 68 333 5.60e-36 131
MS.gene68960.t1 MTR_7g451860 32.374 278 158 9 1 265 76 336 1.06e-35 130
MS.gene68960.t1 MTR_7g047670 32.374 278 158 9 1 265 76 336 1.06e-35 130
MS.gene68960.t1 MTR_5g048850 28.992 238 159 3 1 231 78 312 1.92e-35 130
MS.gene68960.t1 MTR_2g069210 35.227 264 150 11 1 253 98 351 2.38e-35 130
MS.gene68960.t1 MTR_2g068950 31.317 281 164 10 1 263 97 366 3.98e-35 130
MS.gene68960.t1 MTR_5g065010 30.350 257 169 7 1 252 74 325 7.02e-35 129
MS.gene68960.t1 MTR_7g063730 29.021 286 182 6 1 275 95 370 8.14e-35 129
MS.gene68960.t1 MTR_2g069020 33.333 243 146 6 1 233 101 337 1.46e-34 128
MS.gene68960.t1 MTR_1g070085 30.303 264 164 8 1 253 69 323 1.65e-34 127
MS.gene68960.t1 MTR_1g070085 30.303 264 164 8 1 253 69 323 1.65e-34 127
MS.gene68960.t1 MTR_5g048740 26.866 268 185 5 1 261 76 339 1.72e-34 128
MS.gene68960.t1 MTR_2g069300 33.482 224 136 5 1 217 88 305 2.26e-34 127
MS.gene68960.t1 MTR_1g093140 31.687 243 149 7 1 234 107 341 2.56e-34 128
MS.gene68960.t1 MTR_1g070120 32.927 246 142 8 1 233 70 305 2.67e-34 127
MS.gene68960.t1 MTR_2g069190 33.716 261 152 9 1 250 102 352 2.77e-34 127
MS.gene68960.t1 MTR_2g069020 32.917 240 149 5 1 234 101 334 2.81e-34 128
MS.gene68960.t1 MTR_3g117485 28.689 244 158 6 1 233 12 250 2.97e-34 125
MS.gene68960.t1 MTR_1g043760 33.088 272 166 7 1 264 88 351 3.23e-34 127
MS.gene68960.t1 MTR_1g093110 30.303 264 164 9 1 253 104 358 3.86e-34 127
MS.gene68960.t1 MTR_2g083000 32.157 255 151 8 1 249 67 305 4.01e-34 126
MS.gene68960.t1 MTR_1g034140 34.387 253 142 7 1 233 56 304 4.21e-34 126
MS.gene68960.t1 MTR_2g069010 31.159 276 155 9 1 258 103 361 4.67e-34 127
MS.gene68960.t1 MTR_5g022020 33.475 236 142 7 1 226 73 303 5.96e-34 126
MS.gene68960.t1 MTR_3g117485 28.689 244 158 6 1 233 84 322 1.20e-33 125
MS.gene68960.t1 MTR_4g087110 32.549 255 144 8 1 233 64 312 1.27e-33 125
MS.gene68960.t1 MTR_8g074070 33.193 238 135 6 1 233 85 303 1.51e-33 125
MS.gene68960.t1 MTR_3g072820 33.708 267 160 8 1 258 71 329 1.61e-33 125
MS.gene68960.t1 MTR_1g062110 31.373 255 136 7 1 231 98 337 1.95e-33 125
MS.gene68960.t1 MTR_0009s0050 39.007 141 84 1 121 261 22 160 2.38e-33 120
MS.gene68960.t1 MTR_3g026150 32.917 240 149 6 23 258 16 247 2.65e-33 122
MS.gene68960.t1 MTR_3g026150 31.955 266 165 8 1 258 93 350 3.05e-33 124
MS.gene68960.t1 MTR_4g117880 34.211 228 135 6 1 220 95 315 3.88e-33 124
MS.gene68960.t1 MTR_4g115990 30.328 244 149 5 3 244 76 300 4.55e-33 123
MS.gene68960.t1 MTR_2g068960 30.605 281 166 10 1 263 97 366 5.44e-33 124
MS.gene68960.t1 MTR_8g028435 32.018 228 139 5 1 220 95 314 8.15e-33 124
MS.gene68960.t1 MTR_8g075890 33.191 235 144 6 1 226 73 303 1.25e-32 123
MS.gene68960.t1 MTR_1g034120 30.303 297 172 9 1 277 66 347 1.53e-32 122
MS.gene68960.t1 MTR_8g009160 30.942 223 142 4 1 217 95 311 2.68e-32 122
MS.gene68960.t1 MTR_1g070085 32.673 202 126 4 75 276 73 264 3.58e-32 119
MS.gene68960.t1 MTR_5g059130 33.716 261 156 8 1 250 73 327 4.65e-32 121
MS.gene68960.t1 MTR_4g087140 32.941 255 144 7 1 233 64 313 4.79e-32 121
MS.gene68960.t1 MTR_2g069060 31.557 244 146 6 1 233 83 316 9.28e-32 120
MS.gene68960.t1 MTR_1g070100 37.107 159 96 2 75 233 69 223 9.86e-32 118
MS.gene68960.t1 MTR_4g087090 31.048 248 151 6 1 233 69 311 9.95e-32 120
MS.gene68960.t1 MTR_4g093840 31.274 259 165 6 1 252 97 349 1.10e-31 120
MS.gene68960.t1 MTR_1g034060 29.966 297 173 9 1 277 66 347 1.23e-31 120
MS.gene68960.t1 MTR_8g009170 31.111 225 144 4 1 219 95 314 1.67e-31 120
MS.gene68960.t1 MTR_8g075830 31.915 235 147 6 1 226 73 303 2.15e-31 120
MS.gene68960.t1 MTR_2g102570 30.864 243 153 6 1 231 78 317 2.71e-31 119
MS.gene68960.t1 MTR_3g072810 30.451 266 167 6 1 252 68 329 4.00e-31 118
MS.gene68960.t1 MTR_7g105070 33.621 232 125 8 1 217 92 309 4.31e-31 119
MS.gene68960.t1 MTR_1g043770 34.081 223 134 5 1 217 87 302 6.03e-31 118
MS.gene68960.t1 MTR_3g091350 32.917 240 145 6 1 231 94 326 8.05e-31 118
MS.gene68960.t1 MTR_7g102820 28.794 257 150 5 1 233 99 346 1.00e-30 118
MS.gene68960.t1 MTR_5g055800 26.199 271 181 7 1 261 78 339 1.12e-30 117
MS.gene68960.t1 MTR_7g016080 30.292 274 164 7 1 266 70 324 1.16e-30 117
MS.gene68960.t1 MTR_6g464620 29.502 261 162 8 1 246 99 352 1.36e-30 118
MS.gene68960.t1 MTR_4g087120 31.076 251 149 7 1 231 64 310 1.70e-30 117
MS.gene68960.t1 MTR_4g074130 32.422 256 150 9 1 249 75 314 1.93e-30 117
MS.gene68960.t1 MTR_3g464530 30.932 236 145 4 1 224 59 288 2.02e-30 116
MS.gene68960.t1 MTR_8g041620 38.750 160 90 4 76 231 183 338 3.13e-30 117
MS.gene68960.t1 MTR_8g009090 30.769 234 132 5 1 219 95 313 3.21e-30 117
MS.gene68960.t1 MTR_7g045650 32.850 207 129 3 1 200 91 294 3.68e-30 115
MS.gene68960.t1 MTR_5g059140 32.520 246 149 7 1 233 71 312 3.85e-30 116
MS.gene68960.t1 MTR_4g024660 29.310 232 142 6 1 221 101 321 7.43e-30 115
MS.gene68960.t1 MTR_8g009110 30.222 225 146 4 1 219 95 314 8.58e-30 115
MS.gene68960.t1 MTR_0009s0400 36.765 136 84 1 127 262 4 137 1.12e-29 110
MS.gene68960.t1 MTR_1g043775 33.036 224 136 6 1 217 88 304 1.46e-29 115
MS.gene68960.t1 MTR_8g469400 28.800 250 149 7 1 233 89 326 1.64e-29 114
MS.gene68960.t1 MTR_7g081710 36.872 179 105 4 75 252 163 334 1.66e-29 114
MS.gene68960.t1 MTR_1g043810 31.390 223 141 4 1 217 88 304 3.83e-29 114
MS.gene68960.t1 MTR_1g093120 30.328 244 151 8 1 233 101 336 4.05e-29 114
MS.gene68960.t1 MTR_8g062600 28.632 234 141 7 1 221 101 321 8.15e-29 113
MS.gene68960.t1 MTR_8g041600 32.365 241 147 6 1 231 104 338 1.12e-28 112
MS.gene68960.t1 MTR_8g093930 27.925 265 171 9 1 252 82 339 1.24e-28 112
MS.gene68960.t1 MTR_2g019370 28.839 267 169 9 1 251 54 315 1.38e-28 112
MS.gene68960.t1 MTR_8g093980 28.571 245 157 8 1 232 93 332 1.48e-28 112
MS.gene68960.t1 MTR_7g056353 35.979 189 109 5 50 234 130 310 1.50e-28 114
MS.gene68960.t1 MTR_3g058610 29.787 235 152 6 1 226 73 303 2.42e-28 111
MS.gene68960.t1 MTR_8g033380 25.623 281 189 8 1 268 89 362 2.74e-28 111
MS.gene68960.t1 MTR_3g088745 30.370 270 160 11 1 252 71 330 4.99e-28 110
MS.gene68960.t1 MTR_7g056347 27.547 265 172 8 1 253 101 357 5.66e-28 110
MS.gene68960.t1 MTR_3g091360 31.799 239 153 5 1 233 87 321 7.64e-28 110
MS.gene68960.t1 MTR_8g008930 30.870 230 138 7 1 219 95 314 7.92e-28 110
MS.gene68960.t1 MTR_7g029655 31.878 229 133 8 1 217 98 315 8.83e-28 110
MS.gene68960.t1 MTR_1g032140 33.750 240 120 8 1 220 97 317 9.42e-28 110
MS.gene68960.t1 MTR_3g040410 27.059 255 177 6 1 252 42 290 1.56e-27 108
MS.gene68960.t1 MTR_8g063070 27.068 266 172 8 1 253 101 357 2.15e-27 109
MS.gene68960.t1 MTR_1g102070 26.592 267 162 6 1 246 94 347 2.41e-27 109
MS.gene68960.t1 MTR_0032s0040 31.304 230 133 8 1 216 101 319 5.13e-27 108
MS.gene68960.t1 MTR_3g096500 26.538 260 171 8 1 246 101 354 1.81e-26 107
MS.gene68960.t1 MTR_7g102720 28.676 272 157 9 1 253 66 319 5.06e-26 105
MS.gene68960.t1 MTR_3g045230 29.520 271 156 10 1 253 85 338 6.89e-26 105
MS.gene68960.t1 MTR_1g081840 26.692 266 175 9 1 252 88 347 7.22e-26 105
MS.gene68960.t1 MTR_2g068840 26.829 287 166 9 1 262 87 354 7.66e-26 105
MS.gene68960.t1 MTR_1g070135 33.166 199 114 6 1 188 70 260 9.02e-26 103
MS.gene68960.t1 MTR_8g009180 32.973 185 106 4 49 219 63 243 9.85e-26 103
MS.gene68960.t1 MTR_5g055690 29.592 196 127 3 1 188 78 270 1.16e-25 102
MS.gene68960.t1 MTR_1g027290 31.325 249 152 9 1 240 73 311 2.13e-25 103
MS.gene68960.t1 MTR_5g048850 29.082 196 129 3 1 189 78 270 2.45e-25 102
MS.gene68960.t1 MTR_1g011580 27.542 236 161 6 1 229 89 321 2.70e-25 103
MS.gene68960.t1 MTR_1g070185 29.614 233 150 5 1 226 101 326 4.09e-25 103
MS.gene68960.t1 MTR_3g043900 38.281 128 76 2 127 253 212 337 5.16e-25 102
MS.gene68960.t1 MTR_4g087100 34.783 161 99 3 75 233 156 312 6.74e-25 102
MS.gene68960.t1 MTR_1g032250 33.473 239 122 9 1 220 104 324 6.85e-25 102
MS.gene68960.t1 MTR_2g070870 28.205 273 169 8 1 258 54 314 7.30e-25 101
MS.gene68960.t1 MTR_7g062560 26.007 273 191 6 1 272 93 355 1.09e-24 101
MS.gene68960.t1 MTR_1g048940 28.148 270 164 10 1 254 79 334 1.35e-24 101
MS.gene68960.t1 MTR_8g006930 33.061 245 144 9 1 234 101 336 1.71e-24 101
MS.gene68960.t1 MTR_1g043840 39.130 138 80 2 79 216 52 185 4.18e-24 99.8
MS.gene68960.t1 MTR_8g461330 27.273 286 187 9 1 269 53 334 7.98e-24 99.0
MS.gene68960.t1 MTR_8g009080 32.812 192 113 6 1 184 128 311 8.40e-24 99.0
MS.gene68960.t1 MTR_8g009080 32.308 195 116 6 1 187 128 314 8.60e-24 99.0
MS.gene68960.t1 MTR_1g032220 29.670 273 152 10 1 253 104 356 1.30e-23 99.0
MS.gene68960.t1 MTR_0009s0480 29.442 197 125 5 1 188 77 268 1.42e-23 97.1
MS.gene68960.t1 MTR_7g078010 35.602 191 109 7 50 233 156 339 2.23e-23 98.2
MS.gene68960.t1 MTR_4g119410 30.000 270 159 9 1 253 101 357 5.01e-23 97.4
MS.gene68960.t1 MTR_7g056393 28.889 270 162 9 1 253 101 357 1.33e-22 96.3
MS.gene68960.t1 MTR_2g072910 28.571 203 125 4 1 191 84 278 2.32e-22 94.0
MS.gene68960.t1 MTR_1g070110 31.667 180 85 4 75 253 76 218 2.55e-22 93.2
MS.gene68960.t1 MTR_4g087130 29.365 252 155 6 1 233 64 311 7.04e-22 94.0
MS.gene68960.t1 MTR_8g009150 27.434 226 133 5 1 220 95 295 7.85e-22 93.6
MS.gene68960.t1 MTR_3g026150 32.653 196 118 7 1 188 93 282 1.22e-21 92.0
MS.gene68960.t1 MTR_2g069060 30.808 198 117 5 1 188 61 248 2.30e-21 90.9
MS.gene68960.t1 MTR_7g077670 28.947 266 165 10 1 252 40 295 2.71e-21 92.0
MS.gene68960.t1 MTR_8g009120 27.876 226 140 6 1 220 95 303 5.76e-21 91.3
MS.gene68960.t1 MTR_1g043770 31.606 193 119 5 1 187 87 272 9.56e-21 90.1
MS.gene68960.t1 MTR_2g068800 30.876 217 117 8 1 206 87 281 1.70e-20 89.0
MS.gene68960.t1 MTR_8g030880 32.159 227 131 10 30 252 88 295 2.05e-20 89.4
MS.gene68960.t1 MTR_3g464530 29.000 200 124 4 1 188 59 252 2.80e-20 87.8
MS.gene68960.t1 MTR_4g123020 27.138 269 179 7 1 258 48 310 6.35e-20 88.2
MS.gene68960.t1 MTR_1g043775 31.443 194 119 6 1 187 88 274 7.57e-20 87.8
MS.gene68960.t1 MTR_1g062110 29.717 212 110 7 1 188 98 294 1.40e-19 87.0
MS.gene68960.t1 MTR_1g043810 30.052 193 123 4 1 187 88 274 1.97e-19 86.7
MS.gene68960.t1 MTR_8g041600 30.928 194 122 5 1 188 104 291 1.50e-18 84.0
MS.gene68960.t1 MTR_2g033270 27.239 268 178 9 1 258 47 307 2.35e-18 83.6
MS.gene68960.t1 MTR_6g088665 26.667 285 162 10 1 250 50 322 9.66e-18 82.0
MS.gene68960.t1 MTR_4g011720 31.515 165 107 4 70 233 119 278 1.01e-17 81.6
MS.gene68960.t1 MTR_4g096840 23.704 270 174 8 1 249 55 313 1.25e-17 81.6
MS.gene68960.t1 MTR_8g009170 26.943 193 130 4 1 187 95 282 1.32e-17 81.3
MS.gene68960.t1 MTR_1g086550 26.923 286 170 11 1 258 48 322 1.34e-17 81.6
MS.gene68960.t1 MTR_6g088665 27.817 284 159 11 1 250 50 321 2.52e-17 80.9
MS.gene68960.t1 MTR_8g102600 29.528 254 141 11 1 224 41 286 4.15e-17 80.1
MS.gene68960.t1 MTR_5g025090 35.433 127 77 3 138 262 167 290 1.04e-16 78.6
MS.gene68960.t1 MTR_1g032240 42.105 95 44 3 127 220 64 148 5.29e-16 74.3
MS.gene68960.t1 MTR_4g011690 31.325 166 107 5 70 233 119 279 5.33e-16 77.0
MS.gene68960.t1 MTR_4g100600 27.365 296 168 11 1 261 38 321 3.25e-15 74.7
MS.gene68960.t1 MTR_8g102600 33.333 162 88 7 75 224 83 236 6.64e-15 73.6
MS.gene68960.t1 MTR_4g021380 27.273 220 136 7 60 259 93 308 7.03e-15 73.9
MS.gene68960.t1 MTR_3g108520 28.221 163 112 4 75 235 125 284 5.27e-14 71.2
MS.gene68960.t1 MTR_3g040440 46.875 64 33 1 138 201 16 78 3.33e-13 68.2
MS.gene68960.t1 MTR_4g100590 28.994 169 101 6 74 233 75 233 1.21e-12 66.6
MS.gene68960.t1 MTR_4g100590 25.097 259 152 8 1 233 38 280 1.21e-12 67.4
MS.gene68960.t1 MTR_5g025050 33.613 119 70 4 138 252 167 280 6.42e-12 65.1
MS.gene68960.t1 MTR_5g027230 33.065 124 74 4 138 257 168 286 1.08e-11 64.3
MS.gene68960.t1 MTR_7g078010 34.286 140 84 5 50 188 156 288 1.20e-11 64.3
MS.gene68960.t1 MTR_5g024940 32.773 119 71 4 138 252 149 262 3.40e-11 62.8
MS.gene68960.t1 MTR_4g011720 32.500 120 75 4 70 188 119 233 3.78e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68960.t1 AT1G05010 71.429 287 74 3 2 280 37 323 2.56e-152 428
MS.gene68960.t1 AT1G12010 72.894 273 70 1 1 273 39 307 1.10e-151 427
MS.gene68960.t1 AT1G62380 70.819 281 77 2 1 280 39 315 8.06e-150 422
MS.gene68960.t1 AT2G19590 48.339 271 127 4 3 271 30 289 2.16e-93 278
MS.gene68960.t1 AT2G19590 48.339 271 127 4 3 271 45 304 3.05e-93 278
MS.gene68960.t1 AT1G77330 52.128 282 115 6 1 271 35 307 4.40e-92 275
MS.gene68960.t1 AT5G24530 35.361 263 155 6 1 253 67 324 7.41e-50 168
MS.gene68960.t1 AT5G05600 35.878 262 146 7 1 249 97 349 2.81e-47 162
MS.gene68960.t1 AT3G11180 35.938 256 154 4 1 249 126 378 4.98e-47 162
MS.gene68960.t1 AT3G11180 35.938 256 154 4 1 249 126 378 6.15e-47 162
MS.gene68960.t1 AT4G16330 36.742 264 148 8 1 251 94 351 2.87e-46 159
MS.gene68960.t1 AT4G10490 33.818 275 170 6 3 270 76 345 6.46e-46 158
MS.gene68960.t1 AT1G78550 34.874 238 145 5 1 231 8 242 1.24e-45 155
MS.gene68960.t1 AT2G38240 33.333 261 161 4 1 252 78 334 1.26e-45 157
MS.gene68960.t1 AT3G55970 33.846 260 162 5 1 252 87 344 5.64e-45 155
MS.gene68960.t1 AT1G78550 34.874 238 145 5 1 231 86 320 5.89e-45 155
MS.gene68960.t1 AT4G10500 34.252 254 155 6 3 249 78 326 1.39e-43 152
MS.gene68960.t1 AT4G16330 40.976 205 114 5 49 251 46 245 2.95e-43 148
MS.gene68960.t1 AT1G17010 33.473 239 150 3 1 232 87 323 5.38e-42 148
MS.gene68960.t1 AT1G17020 33.061 245 156 3 1 238 86 329 7.51e-41 145
MS.gene68960.t1 AT4G25310 34.310 239 145 4 1 232 85 318 1.82e-40 144
MS.gene68960.t1 AT5G20400 32.922 243 148 4 1 233 79 316 2.32e-40 143
MS.gene68960.t1 AT1G49390 33.054 239 151 3 2 233 1 237 3.56e-39 138
MS.gene68960.t1 AT5G08640 32.692 260 158 6 1 249 72 325 1.23e-38 138
MS.gene68960.t1 AT5G08640 32.692 260 158 6 1 249 72 325 1.23e-38 138
MS.gene68960.t1 AT4G21200 35.622 233 136 8 1 228 77 300 1.27e-38 138
MS.gene68960.t1 AT1G49390 32.500 240 153 3 1 233 79 316 1.74e-38 138
MS.gene68960.t1 AT5G54000 32.636 239 152 5 2 233 1 237 6.84e-38 135
MS.gene68960.t1 AT4G25300 31.799 239 154 3 1 232 85 321 1.74e-37 136
MS.gene68960.t1 AT5G20550 33.745 243 147 6 1 233 79 317 2.61e-37 135
MS.gene68960.t1 AT5G54000 32.500 240 153 5 1 233 80 317 4.14e-37 135
MS.gene68960.t1 AT1G06620 32.472 271 162 7 1 260 96 356 2.25e-36 133
MS.gene68960.t1 AT4G22880 33.476 233 145 3 1 224 82 313 3.49e-35 130
MS.gene68960.t1 AT4G22880 33.476 233 145 3 1 224 82 313 3.49e-35 130
MS.gene68960.t1 AT4G22880 33.476 233 145 3 1 224 82 313 3.49e-35 130
MS.gene68960.t1 AT3G21420 32.472 271 169 7 1 262 90 355 3.61e-35 130
MS.gene68960.t1 AT2G30830 33.992 253 147 9 1 244 89 330 2.11e-34 127
MS.gene68960.t1 AT3G12900 30.797 276 163 10 1 262 88 349 3.41e-34 127
MS.gene68960.t1 AT5G59530 32.129 249 143 7 1 233 92 330 1.84e-33 125
MS.gene68960.t1 AT3G51240 34.043 235 142 6 1 226 72 302 1.85e-33 125
MS.gene68960.t1 AT1G55290 30.303 264 164 8 1 253 91 345 2.22e-33 125
MS.gene68960.t1 AT5G07200 28.090 267 173 4 1 252 93 355 2.74e-33 125
MS.gene68960.t1 AT5G59540 32.075 265 155 9 1 247 95 352 9.70e-33 123
MS.gene68960.t1 AT3G51240 38.122 181 104 4 50 226 42 218 1.42e-32 121
MS.gene68960.t1 AT1G06650 33.065 248 140 9 1 233 99 335 2.78e-32 122
MS.gene68960.t1 AT3G19010 33.865 251 142 6 1 231 61 307 3.56e-32 122
MS.gene68960.t1 AT3G19010 33.865 251 142 6 1 231 61 307 3.56e-32 122
MS.gene68960.t1 AT2G36690 31.048 248 141 7 1 231 93 327 4.00e-32 122
MS.gene68960.t1 AT2G36690 31.048 248 141 7 1 231 93 327 4.00e-32 122
MS.gene68960.t1 AT1G60980 27.881 269 168 6 1 252 92 351 6.50e-32 121
MS.gene68960.t1 AT4G25420 28.464 267 169 7 1 252 95 354 8.90e-32 121
MS.gene68960.t1 AT3G13610 29.434 265 165 8 1 253 91 345 1.01e-31 120
MS.gene68960.t1 AT1G03410 32.245 245 147 9 1 233 91 328 1.01e-31 120
MS.gene68960.t1 AT1G80340 28.253 269 169 7 1 254 76 335 1.13e-31 120
MS.gene68960.t1 AT1G03410 32.245 245 147 9 1 233 128 365 1.31e-31 121
MS.gene68960.t1 AT3G61400 35.526 228 128 9 1 217 99 318 1.42e-31 120
MS.gene68960.t1 AT1G06640 31.321 265 164 8 1 255 99 355 2.78e-31 119
MS.gene68960.t1 AT4G25300 33.962 159 103 1 75 233 72 228 3.22e-31 117
MS.gene68960.t1 AT1G15550 28.571 266 172 7 1 254 83 342 3.43e-31 119
MS.gene68960.t1 AT5G63590 33.460 263 153 9 1 249 43 297 6.21e-31 117
MS.gene68960.t1 AT3G19000 33.992 253 143 7 1 233 66 314 1.16e-30 117
MS.gene68960.t1 AT3G55970 32.653 196 124 3 1 188 87 282 1.46e-30 116
MS.gene68960.t1 AT2G30840 32.031 256 148 9 1 244 93 334 1.76e-30 117
MS.gene68960.t1 AT5G63595 31.950 241 134 8 1 231 54 274 2.72e-30 115
MS.gene68960.t1 AT5G05600 34.328 201 112 6 1 188 97 290 4.62e-30 115
MS.gene68960.t1 AT1G04350 33.878 245 143 10 1 233 89 326 5.07e-30 116
MS.gene68960.t1 AT5G43450 31.048 248 144 8 1 233 93 328 6.50e-30 115
MS.gene68960.t1 AT5G43440 30.579 242 154 6 1 233 95 331 1.25e-29 115
MS.gene68960.t1 AT1G04380 30.943 265 160 9 1 253 76 329 1.32e-29 114
MS.gene68960.t1 AT2G25450 31.429 245 151 8 2 235 90 328 5.81e-29 113
MS.gene68960.t1 AT1G03400 33.482 224 136 7 1 217 82 299 8.83e-29 112
MS.gene68960.t1 AT5G51810 26.692 266 175 6 1 252 93 352 8.45e-28 110
MS.gene68960.t1 AT1G80330 27.817 284 185 9 1 271 75 351 1.87e-27 109
MS.gene68960.t1 AT1G78440 27.925 265 169 9 1 249 44 302 2.32e-27 108
MS.gene68960.t1 AT2G44800 33.871 186 113 5 75 258 166 343 5.98e-27 107
MS.gene68960.t1 AT5G63600 30.502 259 161 8 1 250 62 310 7.47e-27 107
MS.gene68960.t1 AT3G60290 34.831 178 106 5 75 250 166 335 7.63e-27 107
MS.gene68960.t1 AT1G06645 30.864 243 149 7 1 233 112 345 7.75e-27 108
MS.gene68960.t1 AT2G30840 31.250 256 144 10 1 244 93 328 2.28e-26 106
MS.gene68960.t1 AT5G63600 30.769 260 160 9 1 250 62 311 4.08e-26 105
MS.gene68960.t1 AT4G25310 29.289 239 129 4 1 232 85 290 1.09e-25 103
MS.gene68960.t1 AT3G19010 30.677 251 120 6 1 231 61 277 3.16e-25 102
MS.gene68960.t1 AT1G50960 27.477 222 152 4 1 218 75 291 1.70e-24 100
MS.gene68960.t1 AT5G07480 33.516 182 109 5 75 250 50 225 1.83e-24 99.0
MS.gene68960.t1 AT5G07480 28.679 265 166 9 1 250 78 334 2.56e-24 100
MS.gene68960.t1 AT1G30040 29.008 262 167 12 1 249 57 312 2.99e-24 100
MS.gene68960.t1 AT1G06620 32.143 196 117 5 1 188 96 283 1.06e-23 97.8
MS.gene68960.t1 AT1G03400 30.556 252 134 8 1 217 82 327 1.44e-23 99.0
MS.gene68960.t1 AT1G44090 26.792 265 176 7 1 252 98 357 1.95e-23 98.6
MS.gene68960.t1 AT3G19000 31.944 216 123 7 1 196 66 277 2.58e-23 96.7
MS.gene68960.t1 AT3G61400 34.343 198 112 8 1 188 99 288 5.27e-23 96.3
MS.gene68960.t1 AT4G23340 28.058 278 152 10 1 252 39 294 7.60e-23 96.3
MS.gene68960.t1 AT1G06640 30.500 200 127 5 1 194 99 292 9.91e-23 95.9
MS.gene68960.t1 AT5G12270 35.625 160 90 5 109 262 200 352 1.82e-22 95.9
MS.gene68960.t1 AT1G06650 31.818 198 113 7 1 187 99 285 2.53e-22 94.7
MS.gene68960.t1 AT1G06640 31.579 190 118 5 1 184 99 282 5.77e-22 93.2
MS.gene68960.t1 AT3G47190 35.526 152 92 4 75 225 149 295 6.66e-22 93.6
MS.gene68960.t1 AT3G50210 28.517 263 159 9 1 242 50 304 1.33e-21 92.8
MS.gene68960.t1 AT3G50210 28.517 263 159 9 1 242 50 304 1.33e-21 92.8
MS.gene68960.t1 AT3G50210 28.517 263 159 9 1 242 50 304 1.33e-21 92.8
MS.gene68960.t1 AT3G19010 32.701 211 118 6 1 191 61 267 1.39e-21 92.4
MS.gene68960.t1 AT2G30840 31.088 193 121 5 1 187 93 279 1.92e-21 92.0
MS.gene68960.t1 AT5G43450 30.612 196 112 7 1 184 93 276 1.18e-20 89.7
MS.gene68960.t1 AT2G34555 30.899 178 117 3 75 249 133 307 5.18e-20 88.6
MS.gene68960.t1 AT5G43935 28.517 263 148 10 1 250 48 283 8.47e-20 87.4
MS.gene68960.t1 AT3G49620 26.437 261 164 8 1 243 76 326 1.33e-19 87.8
MS.gene68960.t1 AT4G23340 32.044 181 111 7 79 252 1 176 1.64e-19 84.7
MS.gene68960.t1 AT4G21690 27.461 193 125 6 72 254 150 337 4.07e-19 86.3
MS.gene68960.t1 AT5G59540 29.949 197 122 7 1 188 95 284 4.13e-19 85.1
MS.gene68960.t1 AT5G43440 28.947 190 124 5 1 184 95 279 9.96e-19 84.3
MS.gene68960.t1 AT1G04380 29.082 196 123 6 1 188 76 263 1.06e-18 84.0
MS.gene68960.t1 AT5G63580 31.220 205 112 7 1 188 48 240 1.24e-18 83.2
MS.gene68960.t1 AT5G63580 31.034 203 111 7 1 186 48 238 2.22e-18 82.8
MS.gene68960.t1 AT1G47990 24.453 274 185 8 1 259 43 309 2.79e-18 83.6
MS.gene68960.t1 AT3G49630 25.185 270 179 8 1 250 51 317 5.53e-18 82.8
MS.gene68960.t1 AT3G49630 25.185 270 179 8 1 250 47 313 5.70e-18 82.8
MS.gene68960.t1 AT3G50210 30.000 190 116 5 63 242 40 222 1.42e-17 80.5
MS.gene68960.t1 AT3G49630 27.919 197 133 5 62 250 49 244 2.18e-17 80.1
MS.gene68960.t1 AT1G02400 26.148 283 191 11 1 271 53 329 3.67e-17 80.5
MS.gene68960.t1 AT4G25420 27.586 203 127 6 1 188 95 292 1.91e-16 78.2
MS.gene68960.t1 AT5G58660 28.387 155 106 4 73 224 159 311 4.96e-16 77.4
MS.gene68960.t1 AT1G14130 26.695 236 162 5 1 231 38 267 9.95e-16 76.3
MS.gene68960.t1 AT5G51810 26.829 205 132 5 1 191 93 293 1.01e-15 75.9
MS.gene68960.t1 AT4G22870 42.647 68 39 0 157 224 2 69 3.60e-14 67.8
MS.gene68960.t1 AT1G35190 26.335 281 166 9 1 250 41 311 5.11e-14 71.6
MS.gene68960.t1 AT1G35190 25.267 281 146 10 1 250 41 288 8.51e-14 70.5
MS.gene68960.t1 AT1G52820 28.736 174 110 5 61 233 121 281 9.53e-14 70.5
MS.gene68960.t1 AT4G16765 28.261 184 120 7 75 251 59 237 1.61e-13 68.9
MS.gene68960.t1 AT4G16765 28.261 184 120 7 75 251 59 237 1.61e-13 68.9
MS.gene68960.t1 AT4G16765 28.261 184 120 7 75 251 59 237 1.61e-13 68.9
MS.gene68960.t1 AT3G46490 25.373 268 135 9 1 224 46 292 6.60e-13 68.2
MS.gene68960.t1 AT4G16765 28.916 166 108 6 75 233 59 221 1.50e-12 66.2
MS.gene68960.t1 AT4G16765 32.773 119 71 4 138 251 77 191 1.76e-12 65.5
MS.gene68960.t1 AT3G46480 39.362 94 50 3 136 224 154 245 3.76e-12 65.5
MS.gene68960.t1 AT4G03070 27.500 200 119 8 62 253 123 304 2.35e-11 63.5
MS.gene68960.t1 AT4G22870 39.683 63 38 0 162 224 48 110 7.31e-11 59.7

Find 79 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCCATTGGCCATCTTTA+AGG 0.155824 8.2:+1477778 None:intergenic
GGATCCAAGGGACCAAATTT+TGG 0.175226 8.2:-1477924 MS.gene68960:CDS
CTAACTTTGGTTCCAAAATT+TGG 0.232333 8.2:+1477912 None:intergenic
AGCTTCAAATCTTGGCTCTT+TGG 0.245143 8.2:+1477324 None:intergenic
ATTAGTACTATACCTCAATT+TGG 0.306583 8.2:+1477712 None:intergenic
GACTTGCTGTGTGAGAATCT+TGG 0.323307 8.2:-1477981 MS.gene68960:CDS
AACTTTGTCCATCAACTCTA+TGG 0.333621 8.2:+1478450 None:intergenic
GCCTTCATAGCTTCAAATCT+TGG 0.334798 8.2:+1477316 None:intergenic
GGTTCCAAAATTTGGTCCCT+TGG 0.349046 8.2:+1477920 None:intergenic
TGCAGTGGAACTTGAGAAAC+TGG 0.361619 8.2:-1478018 MS.gene68960:CDS
CAAATCTTGGCTCTTTGGCT+TGG 0.362611 8.2:+1477329 None:intergenic
GCTCTTTGGCTTGGAATTTG+AGG 0.371223 8.2:+1477338 None:intergenic
GTCCACCAACCTTGTCATCT+TGG 0.380130 8.2:+1477808 None:intergenic
ACTTGCTGTGTGAGAATCTT+GGG 0.390042 8.2:-1477980 MS.gene68960:CDS
CTGAGTCCTTTGATAAGATC+TGG 0.404368 8.2:+1477867 None:intergenic
CAGAAATCAATGACTTGGAT+TGG 0.409232 8.2:-1478339 MS.gene68960:CDS
TATTTGAAGAAAGTCTTTCA+TGG 0.410538 8.2:-1477945 MS.gene68960:CDS
TGGGATATCCATAGAGTTGA+TGG 0.415130 8.2:-1478458 MS.gene68960:CDS
ACATGCTTAGGCAGTTGGTA+TGG 0.424335 8.2:+1477276 None:intergenic
TCATCACATGCTTAGGCAGT+TGG 0.430982 8.2:+1477271 None:intergenic
GGAGCAAAGGTTCAAAGAAA+TGG 0.439953 8.2:-1478392 MS.gene68960:CDS
GGCAGTTGGTATGGGAATGT+TGG 0.451851 8.2:+1477285 None:intergenic
ATCTCTGATATGTTAGAGTT+AGG 0.452914 8.2:+1478289 None:intergenic
CACACTCTTGTATTTGCCAT+TGG 0.461320 8.2:+1477534 None:intergenic
AGAAATCAATGACTTGGATT+GGG 0.472666 8.2:-1478338 MS.gene68960:CDS
AATCTCTCCTGCAGCAGCCT+TGG 0.474285 8.2:-1477434 MS.gene68960:CDS
TATGGGAATGTTGGATTCCA+TGG 0.476603 8.2:+1477294 None:intergenic
TCCTTCACCAAGGCTGCTGC+AGG 0.479391 8.2:+1477427 None:intergenic
CATTCCATTGTTATCAACCT+TGG 0.482440 8.2:-1477738 MS.gene68960:CDS
GAGAATCTTGGGCTAGAGAA+AGG 0.487980 8.2:-1477969 MS.gene68960:CDS
AGGAGGGTAGTTGCTAACTT+TGG 0.492635 8.2:+1477899 None:intergenic
GAGATTACTGCATCATTGCC+TGG 0.493110 8.2:+1477451 None:intergenic
CAACCTTGGTGACCAAATTG+AGG 0.503779 8.2:-1477724 MS.gene68960:intron
CTCAGAGCCCACACAGATGC+TGG 0.508251 8.2:-1477849 MS.gene68960:CDS
CCTTTGATAAGATCTGGCTT+AGG 0.514259 8.2:+1477873 None:intergenic
GCCAAGATTTGAAGCTATGA+AGG 0.524377 8.2:-1477317 MS.gene68960:CDS
TTAAAACAGGTGATTACCAA+TGG 0.524820 8.2:-1477550 MS.gene68960:intron
CATGCTTAGGCAGTTGGTAT+GGG 0.532498 8.2:+1477277 None:intergenic
TTGATCTTGATCATGACTAC+AGG 0.534190 8.2:-1478264 MS.gene68960:intron
TTCCAAGATGACAAGGTTGG+TGG 0.537071 8.2:-1477810 MS.gene68960:CDS
CTATTCCAAGATGACAAGGT+TGG 0.537341 8.2:-1477813 MS.gene68960:CDS
TGTAGTCATGATCAAGATCA+AGG 0.541430 8.2:+1478266 None:intergenic
TCCTGCAGCAGCCTTGGTGA+AGG 0.544976 8.2:-1477428 MS.gene68960:CDS
CTGATATGTTAGAGTTAGGA+AGG 0.547684 8.2:+1478293 None:intergenic
AGCTCCTTAAAGATGGCCAA+TGG 0.550067 8.2:-1477782 MS.gene68960:CDS
ATTTGAAGCTATGAAGGCCA+TGG 0.550162 8.2:-1477311 MS.gene68960:CDS
GAAAGTCTTTCATGGATCCA+AGG 0.558321 8.2:-1477937 MS.gene68960:CDS
TCAGTCAGAAATCAATGACT+TGG 0.558442 8.2:-1478344 MS.gene68960:CDS
GATTACATGAAACTCTATGC+TGG 0.558834 8.2:-1477361 MS.gene68960:CDS
TGGATTATAAAATGATGCTA+TGG 0.559145 8.2:+1477471 None:intergenic
CTTCTGTTTGAGCAATTACA+CGG 0.563408 8.2:+1477506 None:intergenic
GGACTTCAGCTCCTTAAAGA+TGG 0.565268 8.2:-1477789 MS.gene68960:CDS
ATAAGATCTGGCTTAGGACA+AGG 0.565790 8.2:+1477879 None:intergenic
AAAGAAATGGTAGCAAGCAA+AGG 0.566022 8.2:-1478379 MS.gene68960:CDS
GTCACCAAGGTTGATAACAA+TGG 0.568643 8.2:+1477734 None:intergenic
TTGGTGGGACATCAATCCAT+TGG 0.570294 8.2:+1477766 None:intergenic
CGTGTAATTGCTCAAACAGA+AGG 0.571834 8.2:-1477505 MS.gene68960:CDS
ACAATGGAATGACGCATTGG+TGG 0.574276 8.2:+1477750 None:intergenic
AGAATCTTGGGCTAGAGAAA+GGG 0.575627 8.2:-1477968 MS.gene68960:CDS
AGAAAACTACAAGAAGCGTA+TGG 0.577170 8.2:-1478413 MS.gene68960:CDS
ACAAGAAGCGTATGGAGCAA+AGG 0.585634 8.2:-1478405 MS.gene68960:CDS
CAATGGAATGACGCATTGGT+GGG 0.600451 8.2:+1477751 None:intergenic
CCTAAGCCAGATCTTATCAA+AGG 0.602471 8.2:-1477873 MS.gene68960:CDS
AAAGTCTTTCATGGATCCAA+GGG 0.606069 8.2:-1477936 MS.gene68960:CDS
TGATGAAGTTGGTGAACCAT+GGG 0.610190 8.2:-1478477 None:intergenic
TTGATGAAGTTGGTGAACCA+TGG 0.611805 8.2:-1478478 None:intergenic
GGCAATGAAGGAATTTGCAG+TGG 0.619899 8.2:-1478033 MS.gene68960:CDS
ATAACAATGGAATGACGCAT+TGG 0.625745 8.2:+1477747 None:intergenic
GTGTAATTGCTCAAACAGAA+GGG 0.628227 8.2:-1477504 MS.gene68960:CDS
TTTACTATTCCAAGATGACA+AGG 0.632555 8.2:-1477817 MS.gene68960:CDS
CACATCTAATTCCTTCACCA+AGG 0.639481 8.2:+1477417 None:intergenic
TCAACTCTATGGATATCCCA+TGG 0.641514 8.2:+1478461 None:intergenic
TATGCCACCAGCATCTGTGT+GGG 0.645103 8.2:+1477842 None:intergenic
TTATGCCACCAGCATCTGTG+TGG 0.659371 8.2:+1477841 None:intergenic
ATACCTCAATTTGGTCACCA+AGG 0.670046 8.2:+1477721 None:intergenic
AGATCTGGCTTAGGACAAGG+AGG 0.670854 8.2:+1477882 None:intergenic
AGAGCCCACACAGATGCTGG+TGG 0.706268 8.2:-1477846 MS.gene68960:CDS
ATATGTTAGAGTTAGGAAGG+TGG 0.716594 8.2:+1478296 None:intergenic
GATCTGGCTTAGGACAAGGA+GGG 0.742716 8.2:+1477883 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTGTTATTAATTTT+AGG - chr8.2:1477693-1477712 MS.gene68960:intron 10.0%
!! ATATAATACTTTGTTAAAAC+AGG - chr8.2:1478188-1478207 MS.gene68960:intron 15.0%
!!! AATCATCAAAAACAAATTTT+GGG + chr8.2:1478374-1478393 None:intergenic 15.0%
!!! TAATCATCAAAAACAAATTT+TGG + chr8.2:1478375-1478394 None:intergenic 15.0%
!!! TGTATATATTTTTTTGTGTT+TGG - chr8.2:1477662-1477681 MS.gene68960:intron 15.0%
!! AAATATATACACATAGATCA+TGG + chr8.2:1477653-1477672 None:intergenic 20.0%
!!! AAATCGCATTTTAAAATAAG+AGG + chr8.2:1477545-1477564 None:intergenic 20.0%
!!! TTGTGTTATTAATTTTAGGA+AGG - chr8.2:1477697-1477716 MS.gene68960:intron 20.0%
! ATTAGTACTATACCTCAATT+TGG + chr8.2:1478042-1478061 None:intergenic 25.0%
! CCTCAAAATTCGTAATATTA+CGG - chr8.2:1478114-1478133 MS.gene68960:intron 25.0%
! TATTTGAAGAAAGTCTTTCA+TGG - chr8.2:1477806-1477825 MS.gene68960:CDS 25.0%
! TGGATTATAAAATGATGCTA+TGG + chr8.2:1478283-1478302 None:intergenic 25.0%
! TTACGATATGATATCTATTG+TGG - chr8.2:1477607-1477626 MS.gene68960:intron 25.0%
!! ATAGCATCATTTTATAATCC+AGG - chr8.2:1478282-1478301 MS.gene68960:CDS 25.0%
!! TAATCAAAGGGTATAACTAT+AGG - chr8.2:1478058-1478077 MS.gene68960:intron 25.0%
!!! AAACAAATTTTGGGTAAACT+TGG + chr8.2:1478365-1478384 None:intergenic 25.0%
ATCTCTGATATGTTAGAGTT+AGG + chr8.2:1477465-1477484 None:intergenic 30.0%
GAGGTATAGTACTAATCAAA+GGG - chr8.2:1478046-1478065 MS.gene68960:intron 30.0%
GATTTGAACCTTCATATTGT+GGG - chr8.2:1477560-1477579 MS.gene68960:intron 30.0%
TGAGGTATAGTACTAATCAA+AGG - chr8.2:1478045-1478064 MS.gene68960:intron 30.0%
TTAAAACAGGTGATTACCAA+TGG - chr8.2:1478201-1478220 MS.gene68960:intron 30.0%
TTTACTATTCCAAGATGACA+AGG - chr8.2:1477934-1477953 MS.gene68960:CDS 30.0%
! AGAAATCAATGACTTGGATT+GGG - chr8.2:1477413-1477432 MS.gene68960:CDS 30.0%
! CCGTAATATTACGAATTTTG+AGG + chr8.2:1478117-1478136 None:intergenic 30.0%
! CTAACTTTGGTTCCAAAATT+TGG + chr8.2:1477842-1477861 None:intergenic 30.0%
! TACATTTTCCCACAATATGA+AGG + chr8.2:1477571-1477590 None:intergenic 30.0%
!! TAATTTTAGGAAGGCAATGA+AGG - chr8.2:1477706-1477725 MS.gene68960:intron 30.0%
AAAGAAATGGTAGCAAGCAA+AGG - chr8.2:1477372-1477391 MS.gene68960:CDS 35.0%
AAAGTCTTTCATGGATCCAA+GGG - chr8.2:1477815-1477834 MS.gene68960:CDS 35.0%
AACTTTGTCCATCAACTCTA+TGG + chr8.2:1477304-1477323 None:intergenic 35.0%
ATAACAATGGAATGACGCAT+TGG + chr8.2:1478007-1478026 None:intergenic 35.0%
ATATGTTAGAGTTAGGAAGG+TGG + chr8.2:1477458-1477477 None:intergenic 35.0%
CATTCCATTGTTATCAACCT+TGG - chr8.2:1478013-1478032 MS.gene68960:CDS 35.0%
CGATTTGAACCTTCATATTG+TGG - chr8.2:1477559-1477578 MS.gene68960:intron 35.0%
CTGATATGTTAGAGTTAGGA+AGG + chr8.2:1477461-1477480 None:intergenic 35.0%
CTTCTGTTTGAGCAATTACA+CGG + chr8.2:1478248-1478267 None:intergenic 35.0%
GATTACATGAAACTCTATGC+TGG - chr8.2:1478390-1478409 MS.gene68960:CDS 35.0%
GTGTAATTGCTCAAACAGAA+GGG - chr8.2:1478247-1478266 MS.gene68960:intron 35.0%
TCAGTCAGAAATCAATGACT+TGG - chr8.2:1477407-1477426 MS.gene68960:CDS 35.0%
TGTAGTCATGATCAAGATCA+AGG + chr8.2:1477488-1477507 None:intergenic 35.0%
TTGATCTTGATCATGACTAC+AGG - chr8.2:1477487-1477506 MS.gene68960:CDS 35.0%
! AGAAAACTACAAGAAGCGTA+TGG - chr8.2:1477338-1477357 MS.gene68960:CDS 35.0%
! CAGAAATCAATGACTTGGAT+TGG - chr8.2:1477412-1477431 MS.gene68960:CDS 35.0%
! GTGGGAAAATGTAGTTGATA+CGG - chr8.2:1477578-1477597 MS.gene68960:intron 35.0%
ATACCTCAATTTGGTCACCA+AGG + chr8.2:1478033-1478052 None:intergenic 40.0%
CAATCCATTGGCCATCTTTA+AGG + chr8.2:1477976-1477995 None:intergenic 40.0%
CACACTCTTGTATTTGCCAT+TGG + chr8.2:1478220-1478239 None:intergenic 40.0%
CACATCTAATTCCTTCACCA+AGG + chr8.2:1478337-1478356 None:intergenic 40.0%
CCTAAGCCAGATCTTATCAA+AGG - chr8.2:1477878-1477897 MS.gene68960:CDS 40.0%
CGTGTAATTGCTCAAACAGA+AGG - chr8.2:1478246-1478265 MS.gene68960:intron 40.0%
CTATTCCAAGATGACAAGGT+TGG - chr8.2:1477938-1477957 MS.gene68960:CDS 40.0%
CTGAGTCCTTTGATAAGATC+TGG + chr8.2:1477887-1477906 None:intergenic 40.0%
GAAAGTCTTTCATGGATCCA+AGG - chr8.2:1477814-1477833 MS.gene68960:CDS 40.0%
GCCTTCATAGCTTCAAATCT+TGG + chr8.2:1478438-1478457 None:intergenic 40.0%
GGAGCAAAGGTTCAAAGAAA+TGG - chr8.2:1477359-1477378 MS.gene68960:CDS 40.0%
TATGGGAATGTTGGATTCCA+TGG + chr8.2:1478460-1478479 None:intergenic 40.0%
TCAACTCTATGGATATCCCA+TGG + chr8.2:1477293-1477312 None:intergenic 40.0%
TGGGATATCCATAGAGTTGA+TGG - chr8.2:1477293-1477312 MS.gene68960:CDS 40.0%
! AGAATCTTGGGCTAGAGAAA+GGG - chr8.2:1477783-1477802 MS.gene68960:CDS 40.0%
! AGCTTCAAATCTTGGCTCTT+TGG + chr8.2:1478430-1478449 None:intergenic 40.0%
! ATAAGATCTGGCTTAGGACA+AGG + chr8.2:1477875-1477894 None:intergenic 40.0%
! ATTTGAAGCTATGAAGGCCA+TGG - chr8.2:1478440-1478459 MS.gene68960:CDS 40.0%
! CCTTTGATAAGATCTGGCTT+AGG + chr8.2:1477881-1477900 None:intergenic 40.0%
! GCCAAGATTTGAAGCTATGA+AGG - chr8.2:1478434-1478453 MS.gene68960:CDS 40.0%
!! ACTTGCTGTGTGAGAATCTT+GGG - chr8.2:1477771-1477790 MS.gene68960:CDS 40.0%
!! GTCACCAAGGTTGATAACAA+TGG + chr8.2:1478020-1478039 None:intergenic 40.0%
ACAATGGAATGACGCATTGG+TGG + chr8.2:1478004-1478023 None:intergenic 45.0%
AGCTCCTTAAAGATGGCCAA+TGG - chr8.2:1477969-1477988 MS.gene68960:CDS 45.0%
AGGAGGGTAGTTGCTAACTT+TGG + chr8.2:1477855-1477874 None:intergenic 45.0%
GAGATTACTGCATCATTGCC+TGG + chr8.2:1478303-1478322 None:intergenic 45.0%
GGACTTCAGCTCCTTAAAGA+TGG - chr8.2:1477962-1477981 MS.gene68960:CDS 45.0%
GGCAATGAAGGAATTTGCAG+TGG - chr8.2:1477718-1477737 MS.gene68960:intron 45.0%
GGTTCCAAAATTTGGTCCCT+TGG + chr8.2:1477834-1477853 None:intergenic 45.0%
TGCAGTGGAACTTGAGAAAC+TGG - chr8.2:1477733-1477752 MS.gene68960:CDS 45.0%
TTCCAAGATGACAAGGTTGG+TGG - chr8.2:1477941-1477960 MS.gene68960:CDS 45.0%
TTGGTGGGACATCAATCCAT+TGG + chr8.2:1477988-1478007 None:intergenic 45.0%
! ACAAGAAGCGTATGGAGCAA+AGG - chr8.2:1477346-1477365 MS.gene68960:CDS 45.0%
! CAAATCTTGGCTCTTTGGCT+TGG + chr8.2:1478425-1478444 None:intergenic 45.0%
! CAACCTTGGTGACCAAATTG+AGG - chr8.2:1478027-1478046 MS.gene68960:CDS 45.0%
! CAATGGAATGACGCATTGGT+GGG + chr8.2:1478003-1478022 None:intergenic 45.0%
! GAGAATCTTGGGCTAGAGAA+AGG - chr8.2:1477782-1477801 MS.gene68960:CDS 45.0%
! GGATCCAAGGGACCAAATTT+TGG - chr8.2:1477827-1477846 MS.gene68960:CDS 45.0%
!! GACTTGCTGTGTGAGAATCT+TGG - chr8.2:1477770-1477789 MS.gene68960:CDS 45.0%
!! GCTCTTTGGCTTGGAATTTG+AGG + chr8.2:1478416-1478435 None:intergenic 45.0%
GTCCACCAACCTTGTCATCT+TGG + chr8.2:1477946-1477965 None:intergenic 50.0%
TATGCCACCAGCATCTGTGT+GGG + chr8.2:1477912-1477931 None:intergenic 50.0%
TTATGCCACCAGCATCTGTG+TGG + chr8.2:1477913-1477932 None:intergenic 50.0%
! AGATCTGGCTTAGGACAAGG+AGG + chr8.2:1477872-1477891 None:intergenic 50.0%
! GATCTGGCTTAGGACAAGGA+GGG + chr8.2:1477871-1477890 None:intergenic 50.0%
! GGCAGTTGGTATGGGAATGT+TGG + chr8.2:1478469-1478488 None:intergenic 50.0%
AATCTCTCCTGCAGCAGCCT+TGG - chr8.2:1478317-1478336 MS.gene68960:CDS 55.0%
AGAGCCCACACAGATGCTGG+TGG - chr8.2:1477905-1477924 MS.gene68960:CDS 60.0%
CTCAGAGCCCACACAGATGC+TGG - chr8.2:1477902-1477921 MS.gene68960:CDS 60.0%
TCCTGCAGCAGCCTTGGTGA+AGG - chr8.2:1478323-1478342 MS.gene68960:CDS 60.0%
TCCTTCACCAAGGCTGCTGC+AGG + chr8.2:1478327-1478346 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 1477282 1478491 1477282 ID=MS.gene68960
chr8.2 mRNA 1477282 1478491 1477282 ID=MS.gene68960.t1;Parent=MS.gene68960
chr8.2 exon 1478265 1478491 1478265 ID=MS.gene68960.t1.exon1;Parent=MS.gene68960.t1
chr8.2 CDS 1478265 1478491 1478265 ID=cds.MS.gene68960.t1;Parent=MS.gene68960.t1
chr8.2 exon 1477725 1478058 1477725 ID=MS.gene68960.t1.exon2;Parent=MS.gene68960.t1
chr8.2 CDS 1477725 1478058 1477725 ID=cds.MS.gene68960.t1;Parent=MS.gene68960.t1
chr8.2 exon 1477282 1477563 1477282 ID=MS.gene68960.t1.exon3;Parent=MS.gene68960.t1
chr8.2 CDS 1477282 1477563 1477282 ID=cds.MS.gene68960.t1;Parent=MS.gene68960.t1
Gene Sequence

>MS.gene68960

TTGGTGAACCATGGGATATCCATAGAGTTGATGGACAAAGTTGAGAAGCTGACAAAAGAAAACTACAAGAAGCGTATGGAGCAAAGGTTCAAAGAAATGGTAGCAAGCAAAGGTTTAGAGTTTGCTCAGTCAGAAATCAATGACTTGGATTGGGAAAGCACTTTCTTTTTGCGCCACCTTCCTAACTCTAACATATCAGAGATCCTTGATCTTGATCATGACTACAGGTTAATATTTATTCTCAACATAAATCATGCACACCTCTTATTTTAAAATGCGATTTGAACCTTCATATTGTGGGAAAATGTAGTTGATACGGTCGAAATTACGATATGATATCTATTGTGGTTGCATAATGCAATTTTAAACCATGATCTATGTGTATATATTTTTTTGTGTTTGGTCACATAATTTTTTGTGTTATTAATTTTAGGAAGGCAATGAAGGAATTTGCAGTGGAACTTGAGAAACTGGCTGAGCTACTTCTTGACTTGCTGTGTGAGAATCTTGGGCTAGAGAAAGGGTATTTGAAGAAAGTCTTTCATGGATCCAAGGGACCAAATTTTGGAACCAAAGTTAGCAACTACCCTCCTTGTCCTAAGCCAGATCTTATCAAAGGACTCAGAGCCCACACAGATGCTGGTGGCATAATTTTACTATTCCAAGATGACAAGGTTGGTGGACTTCAGCTCCTTAAAGATGGCCAATGGATTGATGTCCCACCAATGCGTCATTCCATTGTTATCAACCTTGGTGACCAAATTGAGGTATAGTACTAATCAAAGGGTATAACTATAGGTTTGAAATCGTGTTTGCGATGTTGTTGTAGAGACCTCAAAATTCGTAATATTACGGCTGCAATATAAAACTGTCTGCTAGTTTATGCATCATTAATTTTCTTCATTAATATAATACTTTGTTAAAACAGGTGATTACCAATGGCAAATACAAGAGTGTGTTGCACCGTGTAATTGCTCAAACAGAAGGGAACAGAATGTCCATAGCATCATTTTATAATCCAGGCAATGATGCAGTAATCTCTCCTGCAGCAGCCTTGGTGAAGGAATTAGATGTGACAAACCAAGTTTACCCAAAATTTGTTTTTGATGATTACATGAAACTCTATGCTGGCCTCAAATTCCAAGCCAAAGAGCCAAGATTTGAAGCTATGAAGGCCATGGAATCCAACATTCCCATACCAACTGCCTAA

Protein sequence

>MS.gene68960.t1

LVNHGISIELMDKVEKLTKENYKKRMEQRFKEMVASKGLEFAQSEINDLDWESTFFLRHLPNSNISEILDLDHDYRKAMKEFAVELEKLAELLLDLLCENLGLEKGYLKKVFHGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVGGLQLLKDGQWIDVPPMRHSIVINLGDQIEVITNGKYKSVLHRVIAQTEGNRMSIASFYNPGNDAVISPAAALVKELDVTNQVYPKFVFDDYMKLYAGLKFQAKEPRFEAMKAMESNIPIPTA