AlfalfaGEDB | MS.gene06799

M. sativa cultivar XinJiangDaYe / MS.gene06799

KEGG: -
GO: -
PFAM: PF12697.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06799.t1	XP_013461471.1	95.8	265	11	0	1	265	132	396	1.00E-136	496.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06799.t1	H2KZ86	36.4	110	61	3	1	110	163	263	5.0e-07	56.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06799.t1	A0A072V1D8	95.8	265	11	0	1	265	132	396	7.3e-137	496.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene06799	0.861767	8.14E-64	-1.69E-46
MS.gene049171	MS.gene06799	0.865247	6.78E-65	-1.69E-46
MS.gene049173	MS.gene06799	0.829579	4.76E-55	-1.69E-46
MS.gene049217	MS.gene06799	0.882386	1.09E-70	-1.69E-46
MS.gene049222	MS.gene06799	0.898071	7.60E-77	-1.69E-46
MS.gene049232	MS.gene06799	0.837247	5.82E-57	-1.69E-46
MS.gene049285	MS.gene06799	0.894463	2.41E-75	-1.69E-46
MS.gene049320	MS.gene06799	0.886237	4.07E-72	-1.69E-46
MS.gene04939	MS.gene06799	0.811962	5.39E-51	-1.69E-46
MS.gene049427	MS.gene06799	0.949925	4.72E-108	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06799.t1	MTR_3g093570	95.849	265	11	0	1	265	132	396	3.74e-176	494
MS.gene06799.t1	MTR_3g093570	95.111	225	11	0	1	225	132	356	4.59e-145	411
MS.gene06799.t1	MTR_2g102800	30.705	241	110	8	1	238	376	562	1.57e-18	85.5
MS.gene06799.t1	MTR_4g011440	26.891	238	123	7	2	239	373	559	1.45e-15	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06799.t1	AT3G10840	58.955	268	97	5	1	265	58	315	7.85e-99	295
MS.gene06799.t1	AT3G10840	58.955	268	97	5	1	265	58	315	7.85e-99	295
MS.gene06799.t1	AT3G10840	58.955	268	97	5	1	265	72	329	1.11e-98	295
MS.gene06799.t1	AT3G10840	58.955	268	97	5	1	265	133	390	4.42e-98	295
MS.gene06799.t1	AT1G80280	29.583	240	114	7	1	239	374	559	4.55e-17	81.3
MS.gene06799.t1	AT1G15490	27.917	240	120	7	1	239	217	404	2.13e-16	79.0
MS.gene06799.t1	AT1G15490	25.523	239	127	6	1	239	298	485	2.64e-16	79.0
MS.gene06799.t1	AT1G15490	25.630	238	126	6	1	238	369	555	3.08e-16	78.6
MS.gene06799.t1	AT1G52750	27.083	240	124	6	1	240	356	544	3.80e-13	69.7
MS.gene06799.t1	AT1G15490	36.538	104	61	2	1	104	369	467	7.49e-12	65.5

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Find 61 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTGTAAAGTCCAACAAT+TGG	0.497943	3.3:+77959098	None:intergenic
AACTGTTGTCTTCTTTCCTT+TGG	0.297738	3.3:+77959135	None:intergenic
AATCCATGCAACAGAATCAT+AGG	0.447499	3.3:+77960130	None:intergenic
AATCGGGAGAAGGCAACCAA+AGG	0.588799	3.3:-77959151	MS.gene06799:CDS
AATGCAGCCATTGAGGGTTA+AGG	0.418759	3.3:-77958395	MS.gene06799:intron
ACATGCTCAGAGACCTGTTT+TGG	0.311785	3.3:+77958546	None:intergenic
AGAAAATTGGGTGTAGTAAG+TGG	0.424399	3.3:+77959179	None:intergenic
AGAATGGCAATTGATAAGTT+TGG	0.426361	3.3:-77958600	MS.gene06799:CDS
AGCAAGCACTGAAAATGCCA+TGG	0.593327	3.3:+77959952	None:intergenic
AGCATTGAATGCAGCCATTG+AGG	0.536896	3.3:-77958402	MS.gene06799:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCCGTCTGAAAAATAA+GGG	+	chr3.3:77958552-77958571	None:intergenic	30.0%
AGAATGGCAATTGATAAGTT+TGG	-	chr3.3:77959797-77959816	MS.gene06799:intron	30.0%
AGTTTCCAAAATGATATGTC+AGG	-	chr3.3:77959102-77959121	MS.gene06799:CDS	30.0%
ATATGAATCTCAGGTAAGAA+TGG	-	chr3.3:77959781-77959800	MS.gene06799:intron	30.0%
ATGAAAACAACTTATGGTCA+TGG	+	chr3.3:77958858-77958877	None:intergenic	30.0%
CCTGTAAATGTAAAATTCAG+AGG	+	chr3.3:77958694-77958713	None:intergenic	30.0%
CTGAGATTCATATGAAAGAA+AGG	+	chr3.3:77959774-77959793	None:intergenic	30.0%
CTTTCTTTCATATGAATCTC+AGG	-	chr3.3:77959772-77959791	MS.gene06799:intron	30.0%
GATTATCATGTACATTGCAA+AGG	-	chr3.3:77959331-77959350	MS.gene06799:intron	30.0%
TGATTTATTAAAAGCCGAGA+AGG	-	chr3.3:77958482-77958501	MS.gene06799:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	77958270	77960149	77958270	ID=MS.gene06799
chr3.3	mRNA	77958270	77960149	77958270	ID=MS.gene06799.t1;Parent=MS.gene06799
chr3.3	exon	77959902	77960149	77959902	ID=MS.gene06799.t1.exon1;Parent=MS.gene06799.t1
chr3.3	CDS	77959902	77960149	77959902	ID=cds.MS.gene06799.t1;Parent=MS.gene06799.t1
chr3.3	exon	77958968	77959295	77958968	ID=MS.gene06799.t1.exon2;Parent=MS.gene06799.t1
chr3.3	CDS	77958968	77959295	77958968	ID=cds.MS.gene06799.t1;Parent=MS.gene06799.t1
chr3.3	exon	77958527	77958625	77958527	ID=MS.gene06799.t1.exon3;Parent=MS.gene06799.t1
chr3.3	CDS	77958527	77958625	77958527	ID=cds.MS.gene06799.t1;Parent=MS.gene06799.t1
chr3.3	exon	77958270	77958410	77958270	ID=MS.gene06799.t1.exon4;Parent=MS.gene06799.t1
chr3.3	CDS	77958270	77958410	77958270	ID=cds.MS.gene06799.t1;Parent=MS.gene06799.t1

Gene Sequence

>MS.gene06799

ATGATTCTGTTGCATGGATTCGGAGCCTCGGTTTTCTCTTGGAAAAATGTTATGAAGCCTTTAGCCGAGGCTACATGTTCAAAAGTTCTAGCTTTTGATAGGCCAGCGTTTGGATTGACATCTAGGGTAAACTTAACTTCTGGAAATGGAGACACAAATCCTCTAAATGCATACTCCATGGCATTTTCAGTGCTTGCTACCTTGCATTTCTTTGATTTATTAAAAGCCGAGAAGGCAATTTTAGTGGGGTATGTGAATATTCTATCTCCTGTTTTAGTGCCCTTATTTTTCAGACGGATGTTGTTAGGTGACTTTTGTGAATCTAGGTTTAGCTTACTTGCATCTTTTGTTATAAAGTTGACATCTAAATAGGTGATCATAAGTTGCACCAAAGCATCTAGATATGTGTAAATCTGATTATCCTCTGAATTTTACATTTACAGGCCAATGCATTGATACAACTGTAATATTTTAAAATCTAAGGATGTGTTTGTAGTGACTTATTTGATCTTCTTTACTGGCATAACAACTGTATAAACTTGTAAGACTGTTTGAGAGAACTTATGTGAATAACTCATGACATGTCCATGACCATAAGTTGTTTTCATCCTCTCCAGGATAGCTTATGAAAACAACTTATAGCTTATATGAAAAAATGTTTGACTTTGTTTTGATATATAACTTATACATAAGCACCTATATGATAAAGACCTTTTTCAACTTAAACTTCTTCTCCATTGAAATCAGACGTTAAAACTGTATAATTGGTGATATAACCAATTGAAAGTGTTATATTCTCATATGCCTCTACATTGTAGTCCCTTTTCTTATAAGTTTCCAAAATGATATGTCAGGCACTCAGCTGGTTCACTTGTAGCAGTTAACACATATTTCGAAGCTCCTGAACGGGTTGCTGCTCTAATCCTAATTGCCCCGGCAATTTTTGCTCCACTTACTACACCCAATTTTCTAAAAGAATCGGGAGAAGGCAACCAAAGGAAAGAAGACAACAGTTCTGTCACACGAAATCCAATTGTTGGACTTTACAGGTTGCTGTCCAAGATTATCATGTACATTGCAAAGGCAATAGCAGAGATGATGAAGCCGATGATAAATATACTCAACTCTCTCTATAAGAAACTGTTATCATCTATCCTGCGTTCTTCCCCTGGGATAATGCTGGTAATACACTTGTTCATGTAATACTATATAATCTTTGTTCCAGTTACATATCATTATTGGAAAATATAATAATCGAAAAGAAACATGGAATTATTAGCTCAGATACAATTACATTGAACTCACAAAAACCTTTTCATTCAATCAATGTTCCTTAAAATTCCTTGTCTTCATGTCCATACATAGTCAGCTATGTGAGGAAAAATATGGTTAGATTGCTTCTTGCTGATACACTTTTATGCATTTTAGTTTCTTTCTTTAAATGACTGCAATTCTTAAGCTGACACCATATATAATTTGTCATGGCCACTGGACTAATGGCCCTTTCTTTCATATGAATCTCAGGTAAGAATGGCAATTGATAAGTTTGGTGCTGCTGCAGTTCGAAATTCATGGTATGATCCAAAACAGGTCTCTGAGCATGTCCTTAGTGGTTATACAAAGGTAATGTAATCTGACAAAAAATTCCTATTTTCATATTCTGTAACTATATTCTTTCTTTTATTTTCATCATAATTCTCAAATAGTCTGTGCTTACTGGGTGTTAGCATTGAATGCAGCCATTGAGGGTTAAGGATTGGGATAGGGCACTGGTGGAATTCACTGCTGCAATGCTTCTGGACGAGGAATCTAATACAAAGCCAGAACTTTCTAAAAGACTGAATGAAATATCTTGTCCTGGTGATTTCACTGACCCTTAA

Protein sequence

>MS.gene06799.t1

MILLHGFGASVFSWKNVMKPLAEATCSKVLAFDRPAFGLTSRVNLTSGNGDTNPLNAYSMAFSVLATLHFFDLLKAEKAILVGHSAGSLVAVNTYFEAPERVAALILIAPAIFAPLTTPNFLKESGEGNQRKEDNSSVTRNPIVGLYRLLSKIIMYIAKAIAEMMKPMINILNSLYKKLLSSILRSSPGIMLVRMAIDKFGAAAVRNSWYDPKQVSEHVLSGYTKPLRVKDWDRALVEFTAAMLLDEESNTKPELSKRLNEISCPGDFTDP