AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007374.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007374.01.T01 MTR_2g023850 81.609 174 19 3 82 255 25 185 7.44e-86 254
MsG0280007374.01.T01 MTR_1g075540 43.158 190 77 3 67 249 14 179 2.77e-48 158
MsG0280007374.01.T01 MTR_1g075540 41.111 180 75 3 67 239 14 169 2.96e-42 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007374.01.T01 AT4G04470 58.011 181 59 4 72 252 21 184 3.80e-67 206
MsG0280007374.01.T01 AT4G04470 58.011 181 59 4 72 252 21 184 3.80e-67 206
MsG0280007374.01.T01 AT4G14305 45.355 183 83 4 67 249 14 179 5.15e-49 160
MsG0280007374.01.T01 AT4G14305 44.512 164 78 3 86 249 17 167 2.64e-46 152

Find 48 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACATGGGATGTATAATA+AGG 0.236216 2:+14694698 None:intergenic
GCCGGTTATCTTGGACCGTT+TGG 0.285317 2:-14693151 MsG0280007374.01.T01:CDS
CTTCTTGGAGCCGGTTATCT+TGG 0.286225 2:-14693160 MsG0280007374.01.T01:CDS
TCTTCCTCTGTTCGGTTGTT+TGG 0.299490 2:+14694835 None:intergenic
ATCACTGCTGGTGTGTTGTC+AGG 0.330305 2:-14694517 MsG0280007374.01.T01:CDS
TGAATGTCAGGCCTGAATTT+AGG 0.337087 2:+14693011 None:intergenic
GCACTACTTTCATATAATAC+TGG 0.340075 2:-14693128 MsG0280007374.01.T01:CDS
CTGCAGTTCTGGCCTGTTGT+TGG 0.341557 2:-14691453 MsG0280007374.01.T01:intron
ATAGTGTCTCAGAAGCTTAC+TGG 0.346392 2:-14694484 MsG0280007374.01.T01:CDS
TGCAGTTCTGGCCTGTTGTT+GGG 0.356972 2:-14691452 MsG0280007374.01.T01:intron
CCGGTTATCTTGGACCGTTT+GGG 0.404780 2:-14693150 MsG0280007374.01.T01:CDS
TAATTTATCCACCCAACAAC+AGG 0.412614 2:+14691441 None:intergenic
CAAAAGACTTCTTCTTAAAG+TGG 0.417508 2:-14694443 MsG0280007374.01.T01:intron
CCCAAACGGTCCAAGATAAC+CGG 0.436846 2:+14693150 None:intergenic
AAACATGGGATGTATAATAA+GGG 0.437047 2:+14694699 None:intergenic
ACAGCTTAGTAGCATTTGTC+TGG 0.437917 2:-14691383 MsG0280007374.01.T01:intron
TCTATCCATGACCTAAATTC+AGG 0.446962 2:-14693022 MsG0280007374.01.T01:CDS
ATGGGTTCTGTTGCAAAGAA+TGG 0.448957 2:-14694813 MsG0280007374.01.T01:CDS
TGTGAAAGCTAGAGTGAAGA+AGG 0.449767 2:-14691631 MsG0280007374.01.T01:CDS
AGTGGACTGCAGGCCAACCT+TGG 0.468070 2:-14691659 MsG0280007374.01.T01:intron
GTTCGGTTGTTTGGTTTGAC+CGG 0.473076 2:+14694844 None:intergenic
AGAACCCATCTTCCTCTGTT+CGG 0.484457 2:+14694827 None:intergenic
CATGATGCTTTCTGCACTGA+TGG 0.489068 2:+14691603 None:intergenic
CAACAATTAACATGAATGTC+AGG 0.495833 2:+14692999 None:intergenic
TGACATTGACTAAATCTTGA+GGG 0.499512 2:-14691119 None:intergenic
TGGATGCAGCTTCTTGGAGC+CGG 0.501506 2:-14693169 MsG0280007374.01.T01:intron
GAAAGAGATTGAGAAAGAAG+AGG 0.513318 2:+14694733 None:intergenic
GTGGACTGCAGGCCAACCTT+GGG 0.519315 2:-14691658 MsG0280007374.01.T01:intron
AACAACCGAACAGAGGAAGA+TGG 0.525352 2:-14694832 MsG0280007374.01.T01:CDS
CTTTCACATTCACCCAAGGT+TGG 0.536243 2:+14691646 None:intergenic
ATATGAAAGTAGTGCCCAAA+CGG 0.548043 2:+14693136 None:intergenic
CATCAGTGCAGAAAGCATCA+TGG 0.557769 2:-14691602 MsG0280007374.01.T01:CDS
TCACTGCTGGTGTGTTGTCA+GGG 0.558027 2:-14694516 MsG0280007374.01.T01:CDS
ACAACCGAACAGAGGAAGAT+GGG 0.572600 2:-14694831 MsG0280007374.01.T01:CDS
AAACATACCTTGGTTCTCAA+AGG 0.575084 2:+14694756 None:intergenic
CTAGCTTTCACATTCACCCA+AGG 0.576629 2:+14691642 None:intergenic
ATGACATTGACTAAATCTTG+AGG 0.588326 2:-14691120 None:intergenic
TCAGGCCTGAATTTAGGTCA+TGG 0.591917 2:+14693017 None:intergenic
GTGAAAGCTAGAGTGAAGAA+GGG 0.594799 2:-14691630 MsG0280007374.01.T01:CDS
AGTTCTGGCCTGTTGTTGGG+TGG 0.605028 2:-14691449 MsG0280007374.01.T01:CDS
AGAACATCCTTTGAGAACCA+AGG 0.613976 2:-14694763 MsG0280007374.01.T01:CDS
AGACAAATGCTACTAAGCTG+TGG 0.616134 2:+14691385 None:intergenic
AAAGAAGAGGAAACATACCT+TGG 0.618431 2:+14694746 None:intergenic
ATGTCATAGATCGTGCTCGA+AGG 0.638913 2:+14691136 None:intergenic
AAAACAACACGGAAATGAAG+AGG 0.640824 2:+14691408 None:intergenic
CTAAGCTGTGGAAAACAACA+CGG 0.662691 2:+14691397 None:intergenic
CAAACCAAACAACCGAACAG+AGG 0.665643 2:-14694839 MsG0280007374.01.T01:CDS
AGTGCAGAAAGCATCATGGA+CGG 0.692696 2:-14691598 MsG0280007374.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATTGTAAAAGAAA+TGG + Chr2:14692689-14692708 None:intergenic 10.0%
!! TATTTATATATAACAACAAA+AGG + Chr2:14692801-14692820 None:intergenic 10.0%
!! AAATAAATTACTAGTTGAAT+AGG + Chr2:14693603-14693622 None:intergenic 15.0%
!! ATGTTGAAAAAAAAAAAAAC+TGG - Chr2:14692241-14692260 MsG0280007374.01.T01:intron 15.0%
!! ATTCAAATTGAAAAACAAAA+TGG + Chr2:14691618-14691637 None:intergenic 15.0%
!! TAAAAAATGAATTATAGTGT+TGG - Chr2:14691781-14691800 MsG0280007374.01.T01:intron 15.0%
!! TTATGTATATAATGAAAAAG+TGG - Chr2:14694346-14694365 MsG0280007374.01.T01:intron 15.0%
!!! AAAAATTCTTTTGATGATTT+TGG - Chr2:14692382-14692401 MsG0280007374.01.T01:intron 15.0%
!!! AAAGTAGATTTTTTTATACA+AGG + Chr2:14691364-14691383 None:intergenic 15.0%
!!! AAGTAGATTTTTTTATACAA+GGG + Chr2:14691363-14691382 None:intergenic 15.0%
!!! AGTTTTTTTTTTTTTCAACA+TGG + Chr2:14692242-14692261 None:intergenic 15.0%
!!! ATCAGTTTTAAAATGTAATT+TGG - Chr2:14694065-14694084 MsG0280007374.01.T01:intron 15.0%
!!! TAATATTTGTTAATGAAGTT+CGG - Chr2:14691866-14691885 MsG0280007374.01.T01:intron 15.0%
!!! TCTTTGAAAGAAAAAAAAAA+CGG - Chr2:14693927-14693946 MsG0280007374.01.T01:intron 15.0%
!!! TGATTAAAATCAAATGTTTT+TGG + Chr2:14694167-14694186 None:intergenic 15.0%
!!! TTTTAAAATGTAATTTGGAA+TGG - Chr2:14694070-14694089 MsG0280007374.01.T01:intron 15.0%
!! AAATGAAGAATGTGAAAATT+AGG + Chr2:14691468-14691487 None:intergenic 20.0%
!! AATTGAATTTGTAGTGTTAA+AGG - Chr2:14691669-14691688 MsG0280007374.01.T01:intron 20.0%
!! ATGGAAATACTTAAAAATTC+AGG - Chr2:14693106-14693125 MsG0280007374.01.T01:CDS 20.0%
!! ATTGAATTTGTAGTGTTAAA+GGG - Chr2:14691670-14691689 MsG0280007374.01.T01:intron 20.0%
!! ATTTCCATTTATGTGTAAAA+TGG - Chr2:14694308-14694327 MsG0280007374.01.T01:intron 20.0%
!! TATTGACAAAAATTTCTGAA+AGG - Chr2:14692615-14692634 MsG0280007374.01.T01:intron 20.0%
!! TGGAAATACTTAAAAATTCA+GGG - Chr2:14693107-14693126 MsG0280007374.01.T01:CDS 20.0%
!! TGGGTTTGATAAAAAATATT+AGG - Chr2:14692516-14692535 MsG0280007374.01.T01:intron 20.0%
!! TTGAAAAAAAAAAAAACTGG+AGG - Chr2:14692244-14692263 MsG0280007374.01.T01:intron 20.0%
!!! AATTTTCACATTCTTCATTT+TGG - Chr2:14691468-14691487 MsG0280007374.01.T01:intron 20.0%
!!! AGTAGATTTTTTTATACAAG+GGG + Chr2:14691362-14691381 None:intergenic 20.0%
!!! ATATATGCTGTTTTATTTCA+GGG - Chr2:14694851-14694870 MsG0280007374.01.T01:CDS 20.0%
!!! ATTGACAAAAATTTCTGAAA+GGG - Chr2:14692616-14692635 MsG0280007374.01.T01:intron 20.0%
!!! ATTTTACACATAAATGGAAA+TGG + Chr2:14694309-14694328 None:intergenic 20.0%
!!! ATTTTCACATTCTTCATTTT+GGG - Chr2:14691469-14691488 MsG0280007374.01.T01:intron 20.0%
!!! CTTTCTTTGATTATTTTTTC+AGG - Chr2:14693352-14693371 MsG0280007374.01.T01:intron 20.0%
!!! TAACTTTTTCATTTAGTTGA+CGG - Chr2:14693470-14693489 MsG0280007374.01.T01:intron 20.0%
!!! TATATATGCTGTTTTATTTC+AGG - Chr2:14694850-14694869 MsG0280007374.01.T01:CDS 20.0%
!!! TTGTCAATATACTTTTCTTT+TGG + Chr2:14692604-14692623 None:intergenic 20.0%
!!! TTTTACACATAAATGGAAAT+GGG + Chr2:14694308-14694327 None:intergenic 20.0%
! AAACATGGGATGTATAATAA+GGG + Chr2:14691327-14691346 None:intergenic 25.0%
! AAAGAAAGATTCAAAAACTG+TGG - Chr2:14692934-14692953 MsG0280007374.01.T01:intron 25.0%
! AAATGGAAATGGGATAAAAA+TGG + Chr2:14694298-14694317 None:intergenic 25.0%
! AATATTGGAGATTCAATAGA+AGG + Chr2:14692457-14692476 None:intergenic 25.0%
! AATGGAAATGGGATAAAAAT+GGG + Chr2:14694297-14694316 None:intergenic 25.0%
! ATATTTGTCAGTGAAAGATT+AGG - Chr2:14691925-14691944 MsG0280007374.01.T01:intron 25.0%
! ATGAAAACCAAATTGTTCAA+AGG + Chr2:14693404-14693423 None:intergenic 25.0%
! CAATTTGTATTTAGATACTG+CGG - Chr2:14691960-14691979 MsG0280007374.01.T01:intron 25.0%
! TAATTGTTGCTATAGACTAA+CGG - Chr2:14694740-14694759 MsG0280007374.01.T01:CDS 25.0%
! TAGTACTAGATTATTGAGAA+TGG - Chr2:14692490-14692509 MsG0280007374.01.T01:intron 25.0%
! TATACACACTTAAGAAGTTA+AGG + Chr2:14694702-14694721 None:intergenic 25.0%
! TATATACATAACTACCAACA+TGG + Chr2:14694337-14694356 None:intergenic 25.0%
! TATTTGTCAGTGAAAGATTA+GGG - Chr2:14691926-14691945 MsG0280007374.01.T01:intron 25.0%
! TCAAATACATATGGAAAGTA+TGG - Chr2:14693512-14693531 MsG0280007374.01.T01:intron 25.0%
!! AATTGATTCTATTTCTCATC+TGG - Chr2:14692573-14692592 MsG0280007374.01.T01:intron 25.0%
!! ATACTGGAAAAGATTTTCAA+AGG - Chr2:14692911-14692930 MsG0280007374.01.T01:intron 25.0%
!! TTGTGTACAACTTTTTACAT+TGG + Chr2:14694234-14694253 None:intergenic 25.0%
!! TTTTCACATTCTTCATTTTG+GGG - Chr2:14691470-14691489 MsG0280007374.01.T01:intron 25.0%
!!! AGCTCAGTTTTATTTTAGTT+CGG - Chr2:14693700-14693719 MsG0280007374.01.T01:intron 25.0%
!!! ATTTTGAAAATACCAAACAC+AGG - Chr2:14693896-14693915 MsG0280007374.01.T01:intron 25.0%
!!! TACTATGGATTAGTTATTGA+AGG - Chr2:14693428-14693447 MsG0280007374.01.T01:intron 25.0%
!!! TATATGCTGTTTTATTTCAG+GGG - Chr2:14694852-14694871 MsG0280007374.01.T01:CDS 25.0%
!!! TTGGTTTTCATGATATACTA+TGG - Chr2:14693413-14693432 MsG0280007374.01.T01:intron 25.0%
!!! TTTTTGTATGAGTTTGAAGT+TGG + Chr2:14692341-14692360 None:intergenic 25.0%
AAAAAAAAAAACTGGAGGAG+AGG - Chr2:14692249-14692268 MsG0280007374.01.T01:intron 30.0%
AAAAAAAAAACTGGAGGAGA+GGG - Chr2:14692250-14692269 MsG0280007374.01.T01:intron 30.0%
AATCTCATTTGCAATACGAT+CGG - Chr2:14694270-14694289 MsG0280007374.01.T01:intron 30.0%
ACCAATAATTCAATACCTGA+AGG + Chr2:14691391-14691410 None:intergenic 30.0%
AGAAAGACAGGAGAAAAAAA+GGG + Chr2:14694670-14694689 None:intergenic 30.0%
AGAAAGGAAGATAAATGTGA+TGG + Chr2:14692732-14692751 None:intergenic 30.0%
AGATATCCTAAAATGATGTG+TGG - Chr2:14693648-14693667 MsG0280007374.01.T01:intron 30.0%
AGTCATGTGTAAAATGTGTT+TGG + Chr2:14693202-14693221 None:intergenic 30.0%
AGTTGAATAGGAATGTCATT+GGG + Chr2:14693591-14693610 None:intergenic 30.0%
AGTTTATCTCATCACTAAGT+TGG - Chr2:14692419-14692438 MsG0280007374.01.T01:intron 30.0%
AGTTTGAGCTAAGTGATTAA+AGG - Chr2:14691709-14691728 MsG0280007374.01.T01:intron 30.0%
ATCTTCTCCTTTGAACAATT+TGG - Chr2:14693394-14693413 MsG0280007374.01.T01:intron 30.0%
ATTTGTAGTGTTAAAGGGTT+TGG - Chr2:14691675-14691694 MsG0280007374.01.T01:intron 30.0%
CAAAAGACTTCTTCTTAAAG+TGG - Chr2:14691580-14691599 MsG0280007374.01.T01:intron 30.0%
CAAACATGGGATGTATAATA+AGG + Chr2:14691328-14691347 None:intergenic 30.0%
CAACAATTAACATGAATGTC+AGG + Chr2:14693027-14693046 None:intergenic 30.0%
CTTAAAAGCCATACAAAAGA+TGG - Chr2:14694194-14694213 MsG0280007374.01.T01:intron 30.0%
CTTTCCATATGTATTTGACT+TGG + Chr2:14693510-14693529 None:intergenic 30.0%
GCACTACTTTCATATAATAC+TGG - Chr2:14692895-14692914 MsG0280007374.01.T01:intron 30.0%
GTGGACATAAACTTACTTAT+CGG - Chr2:14693667-14693686 MsG0280007374.01.T01:intron 30.0%
TACACCAAGTCAAATACATA+TGG - Chr2:14693503-14693522 MsG0280007374.01.T01:intron 30.0%
TAGTTGAATAGGAATGTCAT+TGG + Chr2:14693592-14693611 None:intergenic 30.0%
TATCTCTTCCACATGAATAT+TGG + Chr2:14692472-14692491 None:intergenic 30.0%
TATTATGAGAGCTCCATAAT+GGG - Chr2:14693741-14693760 MsG0280007374.01.T01:intron 30.0%
TCAACTCGACTTAAATTAGT+GGG - Chr2:14693764-14693783 MsG0280007374.01.T01:intron 30.0%
TCTTAAGTGTGTATAGTTTG+AGG - Chr2:14694707-14694726 MsG0280007374.01.T01:CDS 30.0%
TTGAATCTCCAATATTCATG+TGG - Chr2:14692461-14692480 MsG0280007374.01.T01:intron 30.0%
TTTGTAGTGTTAAAGGGTTT+GGG - Chr2:14691676-14691695 MsG0280007374.01.T01:intron 30.0%
! AGATTATTGAGAATGGACTT+GGG - Chr2:14692497-14692516 MsG0280007374.01.T01:intron 30.0%
! ATCACAATCCATCTTTTGTA+TGG + Chr2:14694205-14694224 None:intergenic 30.0%
! GCATCCATTTTACACATAAA+TGG + Chr2:14694315-14694334 None:intergenic 30.0%
! TAGATTATTGAGAATGGACT+TGG - Chr2:14692496-14692515 MsG0280007374.01.T01:intron 30.0%
! TTATGTCCACACATCATTTT+AGG + Chr2:14693657-14693676 None:intergenic 30.0%
! TTTCACATTCTTCATTTTGG+GGG - Chr2:14691471-14691490 MsG0280007374.01.T01:intron 30.0%
!! AAATCTACTTTTAGTCCTTC+AGG - Chr2:14691373-14691392 MsG0280007374.01.T01:intron 30.0%
!! ATTTAGCATGTTTGTTGTGT+TGG + Chr2:14694786-14694805 None:intergenic 30.0%
!! TCAGGTATTGAATTATTGGT+GGG - Chr2:14691391-14691410 MsG0280007374.01.T01:CDS 30.0%
!! TCCTTCAGGTATTGAATTAT+TGG - Chr2:14691387-14691406 MsG0280007374.01.T01:CDS 30.0%
!! TTCAGGTATTGAATTATTGG+TGG - Chr2:14691390-14691409 MsG0280007374.01.T01:CDS 30.0%
!! TTTTCAACATGGATTGAATC+AGG + Chr2:14692231-14692250 None:intergenic 30.0%
!!! ATATGCTGTTTTATTTCAGG+GGG - Chr2:14694853-14694872 MsG0280007374.01.T01:CDS 30.0%
AAAACAACACGGAAATGAAG+AGG + Chr2:14694618-14694637 None:intergenic 35.0%
AAACGGTATGCATGATACAA+TGG - Chr2:14693944-14693963 MsG0280007374.01.T01:intron 35.0%
AAAGAAGAGGAAACATACCT+TGG + Chr2:14691280-14691299 None:intergenic 35.0%
AACTTGTGTAGAGATCCAAA+AGG - Chr2:14692315-14692334 MsG0280007374.01.T01:intron 35.0%
AATAGGAATGTCATTGGGTT+GGG + Chr2:14693586-14693605 None:intergenic 35.0%
ACAAGGTAAGAATGTGTACA+TGG - Chr2:14692185-14692204 MsG0280007374.01.T01:intron 35.0%
AGAACTGCAGTTCAATTCAA+TGG + Chr2:14694560-14694579 None:intergenic 35.0%
ATATGAAAGTAGTGCCCAAA+CGG + Chr2:14692890-14692909 None:intergenic 35.0%
ATTCAAAAACTGTGGTCAAG+AGG - Chr2:14692942-14692961 MsG0280007374.01.T01:intron 35.0%
ATTGAATTGAACTGCAGTTC+TGG - Chr2:14694559-14694578 MsG0280007374.01.T01:intron 35.0%
CCAATTTCAACTTACCCAAA+GGG - Chr2:14692053-14692072 MsG0280007374.01.T01:intron 35.0%
GAAAGAGATTGAGAAAGAAG+AGG + Chr2:14691293-14691312 None:intergenic 35.0%
GAGAAAGACAGGAGAAAAAA+AGG + Chr2:14694671-14694690 None:intergenic 35.0%
GGTGAAGCAAAAACAAACAT+GGG + Chr2:14691341-14691360 None:intergenic 35.0%
GTATTATGAGAGCTCCATAA+TGG - Chr2:14693740-14693759 MsG0280007374.01.T01:intron 35.0%
GTCAACTCGACTTAAATTAG+TGG - Chr2:14693763-14693782 MsG0280007374.01.T01:intron 35.0%
TAATTTATCCACCCAACAAC+AGG + Chr2:14694585-14694604 None:intergenic 35.0%
TCTACAATGTTGCTGCTAAT+TGG - Chr2:14692645-14692664 MsG0280007374.01.T01:intron 35.0%
TCTATCCATGACCTAAATTC+AGG - Chr2:14693001-14693020 MsG0280007374.01.T01:CDS 35.0%
TCTTACCTTGTAGACGAATT+TGG + Chr2:14692176-14692195 None:intergenic 35.0%
TGCAAATGACTGTGAAAGAA+AGG + Chr2:14692748-14692767 None:intergenic 35.0%
TGTACATGGATATTCTCAAG+TGG - Chr2:14692199-14692218 MsG0280007374.01.T01:intron 35.0%
TTCAAAAACTGTGGTCAAGA+GGG - Chr2:14692943-14692962 MsG0280007374.01.T01:intron 35.0%
TTGCAGCTTCAAGAAAATTG+CGG + Chr2:14693840-14693859 None:intergenic 35.0%
! AAACATACCTTGGTTCTCAA+AGG + Chr2:14691270-14691289 None:intergenic 35.0%
! AGAACAGCTTTTGATCATAG+AGG + Chr2:14692542-14692561 None:intergenic 35.0%
! CCTTTGGGTAAGTTGAAATT+GGG + Chr2:14692055-14692074 None:intergenic 35.0%
! GACTTAAATTAGTGGGTGTT+TGG - Chr2:14693771-14693790 MsG0280007374.01.T01:intron 35.0%
! TTTTATTGGATGCAGCTTCT+TGG - Chr2:14692848-14692867 MsG0280007374.01.T01:intron 35.0%
!! ATAATGAAAAAGTGGACTGC+AGG - Chr2:14694354-14694373 MsG0280007374.01.T01:intron 35.0%
!! TTCATTTTGGGGGTAAAAAC+AGG - Chr2:14691481-14691500 MsG0280007374.01.T01:intron 35.0%
!! TTTCAGATTGATAGCGTGTT+TGG + Chr2:14692130-14692149 None:intergenic 35.0%
!! TTTGGTTTGACCGGAAAAAT+GGG + Chr2:14691173-14691192 None:intergenic 35.0%
AATACCAAACACAGGCTTAG+TGG - Chr2:14693904-14693923 MsG0280007374.01.T01:intron 40.0%
ACAGCTTAGTAGCATTTGTC+TGG - Chr2:14694640-14694659 MsG0280007374.01.T01:intron 40.0%
ACTCCTAATGCACACAACAA+AGG - Chr2:14693287-14693306 MsG0280007374.01.T01:intron 40.0%
AGACAAATGCTACTAAGCTG+TGG + Chr2:14694641-14694660 None:intergenic 40.0%
AGGAAAGTTGAGAGAAAGAC+AGG + Chr2:14694682-14694701 None:intergenic 40.0%
ATAGTGTCTCAGAAGCTTAC+TGG - Chr2:14691539-14691558 MsG0280007374.01.T01:intron 40.0%
ATGGGTTCTGTTGCAAAGAA+TGG - Chr2:14691210-14691229 MsG0280007374.01.T01:intron 40.0%
CAAGAAAATTGCGGTGGAAA+GGG + Chr2:14693831-14693850 None:intergenic 40.0%
CAGTTAACTCATGCAGTGTA+TGG - Chr2:14693087-14693106 MsG0280007374.01.T01:CDS 40.0%
CATGACCAAATTCGTCTACA+AGG - Chr2:14692168-14692187 MsG0280007374.01.T01:intron 40.0%
CATGGATATTCTCAAGTGGA+AGG - Chr2:14692203-14692222 MsG0280007374.01.T01:intron 40.0%
CCCAATTTCAACTTACCCAA+AGG - Chr2:14692052-14692071 MsG0280007374.01.T01:intron 40.0%
CTAAGCTGTGGAAAACAACA+CGG + Chr2:14694629-14694648 None:intergenic 40.0%
GAATAGGAATGTCATTGGGT+TGG + Chr2:14693587-14693606 None:intergenic 40.0%
GGGTGAAGCAAAAACAAACA+TGG + Chr2:14691342-14691361 None:intergenic 40.0%
GGTGAATTTGTACAAGTCCT+CGG - Chr2:14692271-14692290 MsG0280007374.01.T01:intron 40.0%
GTGAAAGCTAGAGTGAAGAA+GGG - Chr2:14694393-14694412 MsG0280007374.01.T01:intron 40.0%
GTGTAAAATGGATGCCATGT+TGG - Chr2:14694320-14694339 MsG0280007374.01.T01:intron 40.0%
TAAAAACAGGTCATCACTGC+TGG - Chr2:14691494-14691513 MsG0280007374.01.T01:intron 40.0%
TCAAGAAAATTGCGGTGGAA+AGG + Chr2:14693832-14693851 None:intergenic 40.0%
TCTACACAAGTTCCTTCCTT+CGG + Chr2:14692307-14692326 None:intergenic 40.0%
TGAATGTCAGGCCTGAATTT+AGG + Chr2:14693015-14693034 None:intergenic 40.0%
TGTGAAAGCTAGAGTGAAGA+AGG - Chr2:14694392-14694411 MsG0280007374.01.T01:intron 40.0%
TTCAACTTACCCAAAGGGTT+TGG - Chr2:14692058-14692077 MsG0280007374.01.T01:intron 40.0%
TTCATTTAGTTGACGGAGCA+TGG - Chr2:14693477-14693496 MsG0280007374.01.T01:intron 40.0%
! AGAACATCCTTTGAGAACCA+AGG - Chr2:14691260-14691279 MsG0280007374.01.T01:intron 40.0%
! ATAGTGTTGGAACAGCAACT+CGG - Chr2:14691794-14691813 MsG0280007374.01.T01:intron 40.0%
! CCCTTTGGGTAAGTTGAAAT+TGG + Chr2:14692056-14692075 None:intergenic 40.0%
! TCTCCTTTGTTGTGTGCATT+AGG + Chr2:14693293-14693312 None:intergenic 40.0%
!! CATGTTTGTTGTGTTGGTGT+TGG + Chr2:14694780-14694799 None:intergenic 40.0%
!! GTTTGGTTTGACCGGAAAAA+TGG + Chr2:14691174-14691193 None:intergenic 40.0%
!! TAAGTCGAGTTGACCCATTA+TGG + Chr2:14693757-14693776 None:intergenic 40.0%
!!! TGAGTTTGAAGTTGGCCTTT+TGG + Chr2:14692333-14692352 None:intergenic 40.0%
AACAACCGAACAGAGGAAGA+TGG - Chr2:14691191-14691210 MsG0280007374.01.T01:intron 45.0%
AAGACCACTAAGCCTGTGTT+TGG + Chr2:14693911-14693930 None:intergenic 45.0%
AATATCAGCTGCCCTACAGT+CGG + Chr2:14691910-14691929 None:intergenic 45.0%
ACAACCGAACAGAGGAAGAT+GGG - Chr2:14691192-14691211 MsG0280007374.01.T01:intron 45.0%
ACCACTAGTCCAAACCCTTT+GGG + Chr2:14692070-14692089 None:intergenic 45.0%
AGAACCCATCTTCCTCTGTT+CGG + Chr2:14691199-14691218 None:intergenic 45.0%
ATGTCATAGATCGTGCTCGA+AGG + Chr2:14694890-14694909 None:intergenic 45.0%
CAAACCAAACAACCGAACAG+AGG - Chr2:14691184-14691203 MsG0280007374.01.T01:intron 45.0%
CAGCTTCAAGAAAATTGCGG+TGG + Chr2:14693837-14693856 None:intergenic 45.0%
CATGATGCTTTCTGCACTGA+TGG + Chr2:14694423-14694442 None:intergenic 45.0%
CTGAAATGTCCGTGCTACAT+AGG - Chr2:14692144-14692163 MsG0280007374.01.T01:intron 45.0%
CTGAGCCATCCAATCATCAT+CGG + Chr2:14694029-14694048 None:intergenic 45.0%
CTTTCACATTCACCCAAGGT+TGG + Chr2:14694380-14694399 None:intergenic 45.0%
GATACAATGGACCTGACTCT+CGG - Chr2:14693957-14693976 MsG0280007374.01.T01:intron 45.0%
GCATCTGACACAAACACATG+TGG + Chr2:14692108-14692127 None:intergenic 45.0%
GCTATAGACTAACGGCTGTT+TGG - Chr2:14694748-14694767 MsG0280007374.01.T01:CDS 45.0%
TCAGGCCTGAATTTAGGTCA+TGG + Chr2:14693009-14693028 None:intergenic 45.0%
TCTTCCTCTGTTCGGTTGTT+TGG + Chr2:14691191-14691210 None:intergenic 45.0%
TGGTCATGACCTATGTAGCA+CGG + Chr2:14692156-14692175 None:intergenic 45.0%
TTCACCTGTCCGATGATGAT+TGG - Chr2:14694017-14694036 MsG0280007374.01.T01:intron 45.0%
TTCGGTCTCTTGTCACATGT+TGG - Chr2:14693718-14693737 MsG0280007374.01.T01:intron 45.0%
! CTAGCTTTCACATTCACCCA+AGG + Chr2:14694384-14694403 None:intergenic 45.0%
! TGGGTGTTTGGTAACCAAGT+GGG - Chr2:14693783-14693802 MsG0280007374.01.T01:intron 45.0%
!! ACAGACGCAACCCATTTTTC+CGG - Chr2:14691160-14691179 MsG0280007374.01.T01:intron 45.0%
!! AGTGCAGAAAGCATCATGGA+CGG - Chr2:14694425-14694444 MsG0280007374.01.T01:intron 45.0%
!! CATCAGTGCAGAAAGCATCA+TGG - Chr2:14694421-14694440 MsG0280007374.01.T01:intron 45.0%
!! GTTCGGTTGTTTGGTTTGAC+CGG + Chr2:14691182-14691201 None:intergenic 45.0%
!!! AATCATATAATTTTTTTTAT+TGG - Chr2:14692834-14692853 MsG0280007374.01.T01:intron 5.0%
ATCACTGCTGGTGTGTTGTC+AGG - Chr2:14691506-14691525 MsG0280007374.01.T01:intron 50.0%
CCATCCAATCATCATCGGAC+AGG + Chr2:14694024-14694043 None:intergenic 50.0%
CCCAAACGGTCCAAGATAAC+CGG + Chr2:14692876-14692895 None:intergenic 50.0%
CCGGTTATCTTGGACCGTTT+GGG - Chr2:14692873-14692892 MsG0280007374.01.T01:intron 50.0%
CCTGTCCGATGATGATTGGA+TGG - Chr2:14694021-14694040 MsG0280007374.01.T01:intron 50.0%
CTTCTTGGAGCCGGTTATCT+TGG - Chr2:14692863-14692882 MsG0280007374.01.T01:intron 50.0%
GAAAGGGTTGAAACGTGAGG+TGG + Chr2:14693815-14693834 None:intergenic 50.0%
GACCACTAGTCCAAACCCTT+TGG + Chr2:14692071-14692090 None:intergenic 50.0%
GTGGAAAGGGTTGAAACGTG+AGG + Chr2:14693818-14693837 None:intergenic 50.0%
TCACTGCTGGTGTGTTGTCA+GGG - Chr2:14691507-14691526 MsG0280007374.01.T01:intron 50.0%
! ACCCAAAGGGTTTGGACTAG+TGG - Chr2:14692066-14692085 MsG0280007374.01.T01:intron 50.0%
! GTGGGTGTTTGGTAACCAAG+TGG - Chr2:14693782-14693801 MsG0280007374.01.T01:intron 50.0%
! GTTAGCTTCAGCTGAACGTG+TGG - Chr2:14693862-14693881 MsG0280007374.01.T01:intron 50.0%
! TGCAGTTCTGGCCTGTTGTT+GGG - Chr2:14694571-14694590 MsG0280007374.01.T01:intron 50.0%
!! TGTTGTGTTGGTGTTGGCAG+AGG + Chr2:14694774-14694793 None:intergenic 50.0%
ACAATGGACCTGACTCTCGG+CGG - Chr2:14693960-14693979 MsG0280007374.01.T01:intron 55.0%
AGGGTTGAAACGTGAGGTGG+CGG + Chr2:14693812-14693831 None:intergenic 55.0%
CGCCTACATCTCCGACTGTA+GGG - Chr2:14691896-14691915 MsG0280007374.01.T01:intron 55.0%
GCCGGTTATCTTGGACCGTT+TGG - Chr2:14692872-14692891 MsG0280007374.01.T01:intron 55.0%
GGTGCAATGTCTCCGAAGGA+AGG - Chr2:14692292-14692311 MsG0280007374.01.T01:intron 55.0%
TCTCTTTACCGCCGAGAGTC+AGG + Chr2:14693971-14693990 None:intergenic 55.0%
TGCCCTACAGTCGGAGATGT+AGG + Chr2:14691901-14691920 None:intergenic 55.0%
TGGATGCAGCTTCTTGGAGC+CGG - Chr2:14692854-14692873 MsG0280007374.01.T01:intron 55.0%
! AGTTCTGGCCTGTTGTTGGG+TGG - Chr2:14694574-14694593 MsG0280007374.01.T01:intron 55.0%
! CTGCAGTTCTGGCCTGTTGT+TGG - Chr2:14694570-14694589 MsG0280007374.01.T01:intron 55.0%
CCTTCGGAGACATTGCACCG+AGG + Chr2:14692291-14692310 None:intergenic 60.0%
GCGCCTACATCTCCGACTGT+AGG - Chr2:14691895-14691914 MsG0280007374.01.T01:intron 60.0%
! CCTCGGTGCAATGTCTCCGA+AGG - Chr2:14692288-14692307 MsG0280007374.01.T01:intron 60.0%
! GTGGACTGCAGGCCAACCTT+GGG - Chr2:14694365-14694384 MsG0280007374.01.T01:intron 60.0%
! TGAGGTGGCGGTAACCCACT+TGG + Chr2:14693800-14693819 None:intergenic 60.0%
!! AGTGGACTGCAGGCCAACCT+TGG - Chr2:14694364-14694383 MsG0280007374.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 14691122 14694923 14691122 ID=MsG0280007374.01;Name=MsG0280007374.01
Chr2 mRNA 14691122 14694923 14691122 ID=MsG0280007374.01.T01;Parent=MsG0280007374.01;Name=MsG0280007374.01.T01;_AED=0.41;_eAED=0.67;_QI=0|0|0|1|0|0|6|0|255
Chr2 exon 14694681 14694923 14694681 ID=MsG0280007374.01.T01:exon:4059;Parent=MsG0280007374.01.T01
Chr2 exon 14694444 14694542 14694444 ID=MsG0280007374.01.T01:exon:4058;Parent=MsG0280007374.01.T01
Chr2 exon 14692966 14693182 14692966 ID=MsG0280007374.01.T01:exon:4057;Parent=MsG0280007374.01.T01
Chr2 exon 14691599 14691669 14691599 ID=MsG0280007374.01.T01:exon:4056;Parent=MsG0280007374.01.T01
Chr2 exon 14691384 14691469 14691384 ID=MsG0280007374.01.T01:exon:4055;Parent=MsG0280007374.01.T01
Chr2 exon 14691122 14691173 14691122 ID=MsG0280007374.01.T01:exon:4054;Parent=MsG0280007374.01.T01
Chr2 CDS 14694681 14694923 14694681 ID=MsG0280007374.01.T01:cds;Parent=MsG0280007374.01.T01
Chr2 CDS 14694444 14694542 14694444 ID=MsG0280007374.01.T01:cds;Parent=MsG0280007374.01.T01
Chr2 CDS 14692966 14693182 14692966 ID=MsG0280007374.01.T01:cds;Parent=MsG0280007374.01.T01
Chr2 CDS 14691599 14691669 14691599 ID=MsG0280007374.01.T01:cds;Parent=MsG0280007374.01.T01
Chr2 CDS 14691384 14691469 14691384 ID=MsG0280007374.01.T01:cds;Parent=MsG0280007374.01.T01
Chr2 CDS 14691122 14691173 14691122 ID=MsG0280007374.01.T01:cds;Parent=MsG0280007374.01.T01
Gene Sequence

>MsG0280007374.01.T01

CTTTGGAAAGTACGTTTGAAACAAAACAGTCTCAAACTACAGACGCAACCCATTTTTCCGGTCAAACCAAACAACCGAACAGAGGAAGATGGGTTCTGTTGCAAAGAATGGACTCAACAGTTACGTCAAACAACTTCAAGAACATCCTTTGAGAACCAAGGTATGTTTCCTCTTCTTTCTCAATCTCTTTCACTTTCAATTTCCCTTATTATACATCCCATGTTTGTTTTTGCTTCACCCCTTGTCATCACTGCTGGTGTGTTGTCAGGGATAAGTGACATAGTGTCTCAGAAGCTTACTGGAATACAGAAACTTCAAGTCAAAAGACTTCTTCTTAAAGTGCTTCTTGGAGCCGGTTATCTTGGACCGTTTGGGCACTACTTTCATATAATACTGGAAAAGATTTTCAAAGGAAAGAAAGATTCAAAAACTGTGGTCAAGAGGGTGATACTACAAAATCTTTTCTTCTATTTCTCTGCATCTATCCATGACCTAAATTCAGGCCTGACATTCATGTTAATTGTTGTCAATCTTCTTTTCTTCAAAGTGTTTATAGCATGCCAACCTTGGGTGAATGTGAAAGCTAGAGTGAAGAAGGGTTATCCATCAGTGCAGAAAGCATCATGGACGTTCTGGCCTGTTGTTGGGTGGATAAATTACAAATTCATGCCTCTTCATTTCCGTGTTGTTTTCCACAGCTTAGTAGCATTTGTCTGGGGGATATTTTTGAACCTTCGAGCACGATCTATGACATTGACTAAATCTTGA

Protein sequence

>MsG0280007374.01.T01

LWKVRLKQNSLKLQTQPIFPVKPNNRTEEDGFCCKEWTQQLRQTTSRTSFENQGMFPLLSQSLSLSISLIIHPMFVFASPLVITAGVLSGISDIVSQKLTGIQKLQVKRLLLKVLLGAGYLGPFGHYFHIILEKIFKGKKDSKTVVKRVILQNLFFYFSASIHDLNSGLTFMLIVVNLLFFKVFIACQPWVNVKARVKKGYPSVQKASWTFWPVVGWINYKFMPLHFRVVFHSLVAFVWGIFLNLRARSMTLTKS*