AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046638.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046638.01.T01 MTR_4g112540 72.906 203 13 1 34 236 21 181 9.17e-97 284
MsG0880046638.01.T01 MTR_8g076220 40.310 129 75 2 109 237 85 211 8.10e-25 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046638.01.T01 AT5G23040 72.340 141 39 0 96 236 48 188 6.13e-69 213
MsG0880046638.01.T01 AT5G23040 72.340 141 39 0 96 236 48 188 6.13e-69 213
MsG0880046638.01.T01 AT3G51140 38.686 137 74 3 109 241 83 213 5.23e-26 102
MsG0880046638.01.T01 AT3G51140 38.129 139 76 3 109 243 83 215 2.69e-25 101

Find 56 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACTAACTCTGGGGAATTT+TGG 0.086811 8:+76006935 None:intergenic
ATGCTTCTGAAGAAGAAATT+TGG 0.165582 8:-76006877 MsG0880046638.01.T01:CDS
TGGGACATTACCTGTATAAA+AGG 0.223578 8:+76006955 None:intergenic
ATTGTTTCTCTTTGCCTTCA+TGG 0.298571 8:-76006630 MsG0880046638.01.T01:CDS
TGCTTCTGAAGAAGAAATTT+GGG 0.335100 8:-76006876 MsG0880046638.01.T01:CDS
TTTGGTTCTGCAGGCCCCTC+CGG 0.339104 8:-76008498 MsG0880046638.01.T01:intron
GCGCGGTTCGGTTCGGTTTG+CGG 0.349349 8:+76009787 None:intergenic
AATTCCCCAGAGTTAGTGTT+TGG 0.356525 8:-76006931 MsG0880046638.01.T01:CDS
TCTTTGCCTTCATGGGTGGC+TGG 0.389646 8:-76006622 MsG0880046638.01.T01:CDS
TTGTTTCTCTTTGCCTTCAT+GGG 0.395534 8:-76006629 MsG0880046638.01.T01:CDS
GCACTTGGTTTGGATGAATT+CGG 0.398721 8:+76009745 None:intergenic
TATAAATTATTTATTCCATA+AGG 0.401783 8:+76006995 None:intergenic
TTGCACTGAACCGCGCGGTT+CGG 0.404290 8:+76009775 None:intergenic
TTGGTTCTGCAGGCCCCTCC+GGG 0.405020 8:-76008497 MsG0880046638.01.T01:intron
CTGAACCGCGCGGTTCGGTT+CGG 0.406277 8:+76009780 None:intergenic
ATTCCCCAGAGTTAGTGTTT+GGG 0.449394 8:-76006930 MsG0880046638.01.T01:CDS
GAAACTTGGCGAAACGTTGT+GGG 0.450485 8:+76008460 None:intergenic
TTTGCGGTTTCGGTTTGGAT+TGG 0.455435 8:-76009718 MsG0880046638.01.T01:intron
TGGGATCCTTACCGACGCCT+TGG 0.464510 8:-76006911 MsG0880046638.01.T01:CDS
AGGATCCCAAACACTAACTC+TGG 0.471905 8:+76006925 None:intergenic
CTGAGGATAATTTCAGTTGG+TGG 0.473276 8:+76006656 None:intergenic
TTTCTGTTGCAACAGTATGC+TGG 0.473842 8:-76006842 MsG0880046638.01.T01:CDS
ACTTAGTACGAAACGAAACT+TGG 0.478032 8:+76008446 None:intergenic
TTTATTTGACTATTGCTACT+TGG 0.484037 8:-76008374 MsG0880046638.01.T01:intron
CGAAACTTGGCGAAACGTTG+TGG 0.490078 8:+76008459 None:intergenic
AAATTATTTATTCCATAAGG+TGG 0.506419 8:+76006998 None:intergenic
TCAAATCAAACCTGAAAAGC+AGG 0.511187 8:+76006573 None:intergenic
TGCGCTGTAGACACACCATA+TGG 0.511360 8:-76008424 MsG0880046638.01.T01:CDS
ACATAGGTGATACCTCCATA+TGG 0.517967 8:+76008409 None:intergenic
TTTCTTCTTCAGAAGCATCA+TGG 0.518629 8:+76006882 None:intergenic
TTTCTCTTTGCCTTCATGGG+TGG 0.529189 8:-76006626 MsG0880046638.01.T01:CDS
GGATCCCAAACACTAACTCT+GGG 0.535496 8:+76006926 None:intergenic
GGCCCCTCCGGGAAAATACA+AGG 0.538659 8:-76008486 MsG0880046638.01.T01:CDS
AATGCTCCAGCCACCCATGA+AGG 0.539964 8:+76006616 None:intergenic
CTTCTGAGGATAATTTCAGT+TGG 0.554844 8:+76006653 None:intergenic
AGCACATTCTTGACCCATGG+TGG 0.555534 8:+76006695 None:intergenic
CACATTCTTGACCCATGGTG+GGG 0.558838 8:+76006697 None:intergenic
TTTAGCACATTCTTGACCCA+TGG 0.565764 8:+76006692 None:intergenic
CTAACACCAAGGCGTCGGTA+AGG 0.567021 8:+76006905 None:intergenic
GAGGAGCGTAGAATCAATAG+AGG 0.575040 8:-76006813 MsG0880046638.01.T01:CDS
GCACATTCTTGACCCATGGT+GGG 0.578738 8:+76006696 None:intergenic
TGATGGCTAGTTTCGTACAA+AGG 0.587486 8:-76006772 MsG0880046638.01.T01:CDS
AGTTGAGGAGTCCCCACCAT+GGG 0.606304 8:-76006708 MsG0880046638.01.T01:CDS
CAAGTTGAAGAAGAAAGTTG+AGG 0.611137 8:-76006723 MsG0880046638.01.T01:CDS
CAAAGAGAAACAATCTTCTG+AGG 0.616936 8:+76006639 None:intergenic
CATGGCTAACACCAAGGCGT+CGG 0.618805 8:+76006900 None:intergenic
GAATTCATCCAAACCAAGTG+CGG 0.628789 8:-76009743 MsG0880046638.01.T01:CDS
TGGCTAGTTTCGTACAAAGG+AGG 0.635562 8:-76006769 MsG0880046638.01.T01:CDS
AACAGTATGCTGGACATGAG+AGG 0.646098 8:-76006832 MsG0880046638.01.T01:CDS
GCTTCTGAAGAAGAAATTTG+GGG 0.649344 8:-76006875 MsG0880046638.01.T01:CDS
AAGCATCATGGCTAACACCA+AGG 0.688521 8:+76006894 None:intergenic
AAGTTGAGGAGTCCCCACCA+TGG 0.688946 8:-76006709 MsG0880046638.01.T01:CDS
CTTCTGAAGAAGAAATTTGG+GGG 0.702966 8:-76006874 MsG0880046638.01.T01:CDS
GCTGTAGACACACCATATGG+AGG 0.724697 8:-76008421 MsG0880046638.01.T01:CDS
GATCCCAAACACTAACTCTG+GGG 0.736381 8:+76006927 None:intergenic
GCAAACCGAACCGAACCGCG+CGG 0.752913 8:-76009785 MsG0880046638.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATTATTTATTCCATA+AGG + Chr8:76009292-76009311 None:intergenic 10.0%
!! AATAAATGAATTAAGGATAT+AGG + Chr8:76007714-76007733 None:intergenic 15.0%
!! TAAAAATAACGATAAATTCT+AGG + Chr8:76008637-76008656 None:intergenic 15.0%
!! TGAAACTAAATAATATAGAT+AGG + Chr8:76008011-76008030 None:intergenic 15.0%
!!! AATGACTATTACTTTAATTT+TGG + Chr8:76006993-76007012 None:intergenic 15.0%
!! AAATTATTTATTCCATAAGG+TGG + Chr8:76009289-76009308 None:intergenic 20.0%
!! ATATTTAAACCATGTAACTT+GGG - Chr8:76006733-76006752 MsG0880046638.01.T01:CDS 20.0%
!! CATGTATTATGAAATGTTTA+GGG + Chr8:76008677-76008696 None:intergenic 20.0%
!! GTTAATATTTCATACATTGA+AGG + Chr8:76007052-76007071 None:intergenic 20.0%
!! TAAAATTCCACATATAAATG+CGG + Chr8:76008381-76008400 None:intergenic 20.0%
!! TAAATTCGAAGAAAAAACAT+AGG + Chr8:76007894-76007913 None:intergenic 20.0%
!! TTACATGGTTTAAATATCTT+GGG + Chr8:76006730-76006749 None:intergenic 20.0%
!!! ACCAAAAGCATTAATTAATA+TGG + Chr8:76007772-76007791 None:intergenic 20.0%
!!! CTTTAAAAGAGTATTATGAT+AGG - Chr8:76007109-76007128 MsG0880046638.01.T01:intron 20.0%
!!! TCCATATTAATTAATGCTTT+TGG - Chr8:76007768-76007787 MsG0880046638.01.T01:intron 20.0%
!!! TCTCTAAATTTTTACTGTAT+TGG - Chr8:76007243-76007262 MsG0880046638.01.T01:intron 20.0%
!!! TGCTTTTGAAAAAATATTGA+TGG - Chr8:76009495-76009514 MsG0880046638.01.T01:intron 20.0%
! AAAATTCCACATATAAATGC+GGG + Chr8:76008380-76008399 None:intergenic 25.0%
! AAATGAATTAAGGATATAGG+AGG + Chr8:76007711-76007730 None:intergenic 25.0%
! AACATCAATTATAAGGATAG+AGG - Chr8:76008820-76008839 MsG0880046638.01.T01:intron 25.0%
! AATATAGATAGGTGAATATG+TGG + Chr8:76008000-76008019 None:intergenic 25.0%
! ACATCAATTATAAGGATAGA+GGG - Chr8:76008821-76008840 MsG0880046638.01.T01:intron 25.0%
! CAAAAATCATCTTAAAGCTA+AGG + Chr8:76009177-76009196 None:intergenic 25.0%
! GATATTTAAACCATGTAACT+TGG - Chr8:76006732-76006751 MsG0880046638.01.T01:CDS 25.0%
! GCATGTATTATGAAATGTTT+AGG + Chr8:76008678-76008697 None:intergenic 25.0%
! GTTACATGGTTTAAATATCT+TGG + Chr8:76006731-76006750 None:intergenic 25.0%
! TAATCTATATTATACGCCAA+AGG + Chr8:76008559-76008578 None:intergenic 25.0%
! TAGAAGCAACATCAATTATA+AGG - Chr8:76008813-76008832 MsG0880046638.01.T01:intron 25.0%
! TATAAAAGTTCCATACAACA+GGG - Chr8:76008861-76008880 MsG0880046638.01.T01:intron 25.0%
! TATTTAAACCATGTAACTTG+GGG - Chr8:76006734-76006753 MsG0880046638.01.T01:CDS 25.0%
! TGAAGCGAATAAATGAATTA+AGG + Chr8:76007721-76007740 None:intergenic 25.0%
! TTAGAGATAGAACTATGAAA+AGG + Chr8:76007230-76007249 None:intergenic 25.0%
! TTGTTGTAAGCAAATAGTAA+GGG - Chr8:76008143-76008162 MsG0880046638.01.T01:intron 25.0%
! TTTATTTGACTATTGCTACT+TGG - Chr8:76007910-76007929 MsG0880046638.01.T01:intron 25.0%
!! GAAATTGCAATCCTAATTTT+TGG + Chr8:76008904-76008923 None:intergenic 25.0%
!!! AACTTTTGTTTAAAATGCAC+CGG - Chr8:76008105-76008124 MsG0880046638.01.T01:intron 25.0%
!!! CTTAGCTTTAAGATGATTTT+TGG - Chr8:76009175-76009194 MsG0880046638.01.T01:intron 25.0%
!!! GTAGATCTGAAGTTTTTTAT+TGG + Chr8:76009077-76009096 None:intergenic 25.0%
!!! TTTAATTTTGGATGTACTGA+CGG + Chr8:76006981-76007000 None:intergenic 25.0%
AAAAAAAAAGAAGGGATGTG+TGG - Chr8:76007408-76007427 MsG0880046638.01.T01:intron 30.0%
AAAAGATTCTCAACCAAGAA+AGG + Chr8:76009050-76009069 None:intergenic 30.0%
ACAAAATGTCTTATCCCATT+AGG - Chr8:76008042-76008061 MsG0880046638.01.T01:intron 30.0%
ACATAACATGCTCTTGAATT+AGG - Chr8:76007563-76007582 MsG0880046638.01.T01:intron 30.0%
ATAATCACGTAATCTGCTAT+CGG - Chr8:76007480-76007499 MsG0880046638.01.T01:intron 30.0%
ATATTATACGCCAAAGGTTA+AGG + Chr8:76008553-76008572 None:intergenic 30.0%
CAGCATTTATATTCCTTTCT+TGG - Chr8:76009034-76009053 MsG0880046638.01.T01:intron 30.0%
CATAACATGCTCTTGAATTA+GGG - Chr8:76007564-76007583 MsG0880046638.01.T01:intron 30.0%
CTATAAAAGTTCCATACAAC+AGG - Chr8:76008860-76008879 MsG0880046638.01.T01:intron 30.0%
TATGCTCTCCAATAGTTATT+TGG + Chr8:76007164-76007183 None:intergenic 30.0%
TATTATACGCCAAAGGTTAA+GGG + Chr8:76008552-76008571 None:intergenic 30.0%
TCAACGGAATAAAACCTAAT+GGG + Chr8:76008059-76008078 None:intergenic 30.0%
TCTCAATTACAACAACAACA+TGG - Chr8:76007618-76007637 MsG0880046638.01.T01:intron 30.0%
TCTGCAAAAAACATACATCT+CGG - Chr8:76006935-76006954 MsG0880046638.01.T01:CDS 30.0%
TGGAATGTAACTTTAGCAAA+AGG + Chr8:76006804-76006823 None:intergenic 30.0%
TGGCGTATAATATAGATTAG+TGG - Chr8:76008560-76008579 MsG0880046638.01.T01:intron 30.0%
TTCAACGGAATAAAACCTAA+TGG + Chr8:76008060-76008079 None:intergenic 30.0%
! ATGCTTCTGAAGAAGAAATT+TGG - Chr8:76009407-76009426 MsG0880046638.01.T01:intron 30.0%
! CAAATAGTAAGGGTTTGTTT+GGG - Chr8:76008153-76008172 MsG0880046638.01.T01:intron 30.0%
! CTTGTTGTAAGCAAATAGTA+AGG - Chr8:76008142-76008161 MsG0880046638.01.T01:intron 30.0%
! TGCTTCTGAAGAAGAAATTT+GGG - Chr8:76009408-76009427 MsG0880046638.01.T01:intron 30.0%
!! GAACTTGATCTTTGATTTGA+TGG - Chr8:76008968-76008987 MsG0880046638.01.T01:intron 30.0%
!! TGGTTTGTGGTTTTTCTATT+GGG - Chr8:76006591-76006610 MsG0880046638.01.T01:CDS 30.0%
!! TTTCAATCTCCGATTTTAGT+TGG - Chr8:76008920-76008939 MsG0880046638.01.T01:intron 30.0%
!!! ATGCCTGTAGGTTATTTTTT+GGG - Chr8:76008725-76008744 MsG0880046638.01.T01:intron 30.0%
!!! TATGCCTGTAGGTTATTTTT+TGG - Chr8:76008724-76008743 MsG0880046638.01.T01:intron 30.0%
!!! TTGGTTTGTGGTTTTTCTAT+TGG - Chr8:76006590-76006609 MsG0880046638.01.T01:CDS 30.0%
AACTTTAGCAAAAGGAGAAG+TGG + Chr8:76006796-76006815 None:intergenic 35.0%
ACAAGTGCAAAACTAAAAGC+CGG + Chr8:76008127-76008146 None:intergenic 35.0%
ACTTAGTACGAAACGAAACT+TGG + Chr8:76007841-76007860 None:intergenic 35.0%
ATATCATACCCCAAGTTACA+TGG + Chr8:76006745-76006764 None:intergenic 35.0%
ATGCTCTTGAATTAGGGATT+GGG - Chr8:76007570-76007589 MsG0880046638.01.T01:intron 35.0%
CAAAGAGAAACAATCTTCTG+AGG + Chr8:76009648-76009667 None:intergenic 35.0%
CAATTATAAGGATAGAGGGA+AGG - Chr8:76008825-76008844 MsG0880046638.01.T01:intron 35.0%
GTCAAGGACCAAATAACTAT+TGG - Chr8:76007153-76007172 MsG0880046638.01.T01:intron 35.0%
GTTTGTTTGGGAATTTAGGA+GGG - Chr8:76008165-76008184 MsG0880046638.01.T01:intron 35.0%
TACATCATCGTATTCAAGCT+GGG + Chr8:76006670-76006689 None:intergenic 35.0%
TCAAATCAAACCTGAAAAGC+AGG + Chr8:76009714-76009733 None:intergenic 35.0%
TGACTACTCATTACATGTCA+AGG - Chr8:76007137-76007156 MsG0880046638.01.T01:intron 35.0%
TGGGACATTACCTGTATAAA+AGG + Chr8:76009332-76009351 None:intergenic 35.0%
TTAAGGATATAGGAGGAAGA+AGG + Chr8:76007704-76007723 None:intergenic 35.0%
TTTGTTTGGGAATTTAGGAG+GGG - Chr8:76008166-76008185 MsG0880046638.01.T01:intron 35.0%
! AAGGGTTTGTTTGGGAATTT+AGG - Chr8:76008161-76008180 MsG0880046638.01.T01:intron 35.0%
! ATACGTGCATCCTTTTATAC+AGG - Chr8:76009319-76009338 MsG0880046638.01.T01:intron 35.0%
! ATTGTTTCTCTTTGCCTTCA+TGG - Chr8:76009654-76009673 MsG0880046638.01.T01:intron 35.0%
! CAAGTTGAAGAAGAAAGTTG+AGG - Chr8:76009561-76009580 MsG0880046638.01.T01:intron 35.0%
! CTTCTGAAGAAGAAATTTGG+GGG - Chr8:76009410-76009429 MsG0880046638.01.T01:intron 35.0%
! CTTCTGAGGATAATTTCAGT+TGG + Chr8:76009634-76009653 None:intergenic 35.0%
! GCAAATAGTAAGGGTTTGTT+TGG - Chr8:76008152-76008171 MsG0880046638.01.T01:intron 35.0%
! GCTTCTGAAGAAGAAATTTG+GGG - Chr8:76009409-76009428 MsG0880046638.01.T01:intron 35.0%
! GTCTTCTATTTTCCACCTTA+TGG - Chr8:76009274-76009293 MsG0880046638.01.T01:intron 35.0%
! TTGATGGTCATAGTAATGAG+TGG - Chr8:76008984-76009003 MsG0880046638.01.T01:intron 35.0%
! TTGTGGTTTTTCTATTGGGT+TGG - Chr8:76006595-76006614 MsG0880046638.01.T01:CDS 35.0%
! TTGTTTCTCTTTGCCTTCAT+GGG - Chr8:76009655-76009674 MsG0880046638.01.T01:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG - Chr8:76006703-76006722 MsG0880046638.01.T01:CDS 35.0%
!! TTTCTTCTTCAGAAGCATCA+TGG + Chr8:76009405-76009424 None:intergenic 35.0%
!!! ACTAGTTTTATGTCCTCTTC+TGG - Chr8:76009126-76009145 MsG0880046638.01.T01:intron 35.0%
!!! ATTAATGCTTTTGGTTCTGC+AGG - Chr8:76007777-76007796 MsG0880046638.01.T01:intron 35.0%
!!! CTGTAGGTTATTTTTTGGGA+GGG - Chr8:76008729-76008748 MsG0880046638.01.T01:intron 35.0%
!!! GAAGAAGGAGTACAGTTTTT+TGG + Chr8:76007689-76007708 None:intergenic 35.0%
!!! GTTTTTCTATTGGGTTGGTT+CGG - Chr8:76006600-76006619 MsG0880046638.01.T01:CDS 35.0%
!!! TGTAGGTTATTTTTTGGGAG+GGG - Chr8:76008730-76008749 MsG0880046638.01.T01:intron 35.0%
!!! TTGCAATCCTAATTTTTGGC+TGG + Chr8:76008900-76008919 None:intergenic 35.0%
AATTCCCCAGAGTTAGTGTT+TGG - Chr8:76009353-76009372 MsG0880046638.01.T01:intron 40.0%
ACATAGGTGATACCTCCATA+TGG + Chr8:76007878-76007897 None:intergenic 40.0%
AGCAATGATCCCTTAACCTT+TGG - Chr8:76008540-76008559 MsG0880046638.01.T01:intron 40.0%
ATGGGCTTCACAAATTGCTA+TGG + Chr8:76008329-76008348 None:intergenic 40.0%
ATTCCCCAGAGTTAGTGTTT+GGG - Chr8:76009354-76009373 MsG0880046638.01.T01:intron 40.0%
CATGCTCTTGAATTAGGGAT+TGG - Chr8:76007569-76007588 MsG0880046638.01.T01:intron 40.0%
CCTCCCAAAAAATAACCTAC+AGG + Chr8:76008731-76008750 None:intergenic 40.0%
CTGAGGATAATTTCAGTTGG+TGG + Chr8:76009631-76009650 None:intergenic 40.0%
GAATTCATCCAAACCAAGTG+CGG - Chr8:76006541-76006560 MsG0880046638.01.T01:CDS 40.0%
GATACACTTCCACGATTCAA+CGG + Chr8:76008075-76008094 None:intergenic 40.0%
GCTTTGATAAGTATGCCTGT+AGG - Chr8:76008713-76008732 MsG0880046638.01.T01:intron 40.0%
GGAGGGTTTAAAAACTAGGA+AGG - Chr8:76008187-76008206 MsG0880046638.01.T01:intron 40.0%
GGGTCCATAGTACAAAATGA+CGG + Chr8:76006710-76006729 None:intergenic 40.0%
GGGTTTAAAAACTAGGAAGG+AGG - Chr8:76008190-76008209 MsG0880046638.01.T01:intron 40.0%
GTACATCATCGTATTCAAGC+TGG + Chr8:76006671-76006690 None:intergenic 40.0%
TACATGCTGAGAAGCAAACA+AGG - Chr8:76008691-76008710 MsG0880046638.01.T01:intron 40.0%
TAGAAGCAAGACGGAGTATA+TGG + Chr8:76006824-76006843 None:intergenic 40.0%
TGCAATCCCGCATTTATATG+TGG - Chr8:76008371-76008390 MsG0880046638.01.T01:intron 40.0%
TTTAGCACATTCTTGACCCA+TGG + Chr8:76009595-76009614 None:intergenic 40.0%
TTTCTGTTGCAACAGTATGC+TGG - Chr8:76009442-76009461 MsG0880046638.01.T01:intron 40.0%
! ATTCCTTGTATTTTCCCGGA+GGG + Chr8:76007804-76007823 None:intergenic 40.0%
! CAGTTGGCTCCAACTAAAAT+CGG + Chr8:76008932-76008951 None:intergenic 40.0%
! GGTTTGTTTGGGAATTTAGG+AGG - Chr8:76008164-76008183 MsG0880046638.01.T01:intron 40.0%
! TGGGATTCCTTGTATTTTCC+CGG + Chr8:76007808-76007827 None:intergenic 40.0%
!! ACACTAACTCTGGGGAATTT+TGG + Chr8:76009352-76009371 None:intergenic 40.0%
!! CACTAACTCTGGGGAATTTT+GGG + Chr8:76009351-76009370 None:intergenic 40.0%
!! GCACTTGGTTTGGATGAATT+CGG + Chr8:76006542-76006561 None:intergenic 40.0%
!! GTTTGGATTGGTTTGGTTTG+TGG - Chr8:76006578-76006597 MsG0880046638.01.T01:CDS 40.0%
!! TGATGGCTAGTTTCGTACAA+AGG - Chr8:76009512-76009531 MsG0880046638.01.T01:intron 40.0%
!! TTTCGTTTTGGTCTGCAAGA+GGG + Chr8:76007516-76007535 None:intergenic 40.0%
!!! AGGAGTACAGTTTTTTGGAG+AGG + Chr8:76007684-76007703 None:intergenic 40.0%
!!! ATCCTAATTTTTGGCTGGTC+AGG + Chr8:76008895-76008914 None:intergenic 40.0%
!!! CAGTTTTTTGGAGAGGAAAG+CGG + Chr8:76007677-76007696 None:intergenic 40.0%
!!! CCTGTAGGTTATTTTTTGGG+AGG - Chr8:76008728-76008747 MsG0880046638.01.T01:intron 40.0%
!!! GGTTTTATTCCGTTGAATCG+TGG - Chr8:76008063-76008082 MsG0880046638.01.T01:intron 40.0%
!!! GTAGGTTATTTTTTGGGAGG+GGG - Chr8:76008731-76008750 MsG0880046638.01.T01:intron 40.0%
AAAGGAGAAGTGGTCTACCT+TGG + Chr8:76006786-76006805 None:intergenic 45.0%
AAATGACGTCCTGCTTAGCT+TGG + Chr8:76008782-76008801 None:intergenic 45.0%
AACAGTATGCTGGACATGAG+AGG - Chr8:76009452-76009471 MsG0880046638.01.T01:intron 45.0%
AAGCATCATGGCTAACACCA+AGG + Chr8:76009393-76009412 None:intergenic 45.0%
AATGACGTCCTGCTTAGCTT+GGG + Chr8:76008781-76008800 None:intergenic 45.0%
ACTGCAACATCAGTTCAAGC+TGG - Chr8:76008429-76008448 MsG0880046638.01.T01:CDS 45.0%
AGAAGAGCCTCAGGTATTAG+GGG + Chr8:76006635-76006654 None:intergenic 45.0%
AGCTTGAACTGATGTTGCAG+TGG + Chr8:76008430-76008449 None:intergenic 45.0%
AGGAGGAAGCTGAAGGAATA+TGG - Chr8:76008207-76008226 MsG0880046638.01.T01:intron 45.0%
AGGATCCCAAACACTAACTC+TGG + Chr8:76009362-76009381 None:intergenic 45.0%
ATAGTGCCGCAATGGTAGAT+GGG + Chr8:76008347-76008366 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG + Chr8:76006667-76006686 None:intergenic 45.0%
ATCCTGAAGGTGGAAAAGGA+GGG + Chr8:76008518-76008537 None:intergenic 45.0%
ATCTACCATTGCGGCACTAT+AGG - Chr8:76008347-76008366 MsG0880046638.01.T01:intron 45.0%
ATCTCCAACTTTCACCTCCA+AGG - Chr8:76006766-76006785 MsG0880046638.01.T01:CDS 45.0%
CTACATCCTGAAGGTGGAAA+AGG + Chr8:76008522-76008541 None:intergenic 45.0%
CTCCTGACCAGCCAAAAATT+AGG - Chr8:76008890-76008909 MsG0880046638.01.T01:intron 45.0%
GAAACTTGGCGAAACGTTGT+GGG + Chr8:76007827-76007846 None:intergenic 45.0%
GAGAAGAGCCTCAGGTATTA+GGG + Chr8:76006636-76006655 None:intergenic 45.0%
GAGGGGAGGGTTTAAAAACT+AGG - Chr8:76008183-76008202 MsG0880046638.01.T01:intron 45.0%
GATCCCAAACACTAACTCTG+GGG + Chr8:76009360-76009379 None:intergenic 45.0%
GGATCATTGCTACATCCTGA+AGG + Chr8:76008531-76008550 None:intergenic 45.0%
GGATCCCAAACACTAACTCT+GGG + Chr8:76009361-76009380 None:intergenic 45.0%
GGCTTCACAAATTGCTATGG+CGG + Chr8:76008326-76008345 None:intergenic 45.0%
TATAGTGCCGCAATGGTAGA+TGG + Chr8:76008348-76008367 None:intergenic 45.0%
TCATTGCTACATCCTGAAGG+TGG + Chr8:76008528-76008547 None:intergenic 45.0%
TCCTCTTCTGGTAACTAGCT+GGG - Chr8:76009138-76009157 MsG0880046638.01.T01:intron 45.0%
TCTACCTTGGAGGTGAAAGT+TGG + Chr8:76006773-76006792 None:intergenic 45.0%
TGAAATAGCCCAAGCTAAGC+AGG - Chr8:76008770-76008789 MsG0880046638.01.T01:intron 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + Chr8:76006658-76006677 None:intergenic 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + Chr8:76006644-76006663 None:intergenic 45.0%
TTGAACACCCCTAATACCTG+AGG - Chr8:76006625-76006644 MsG0880046638.01.T01:CDS 45.0%
TTTCTCTTTGCCTTCATGGG+TGG - Chr8:76009658-76009677 MsG0880046638.01.T01:intron 45.0%
TTTGGGAATTTAGGAGGGGA+GGG - Chr8:76008170-76008189 MsG0880046638.01.T01:intron 45.0%
! AAACGAACGCGTTCCTTTTC+CGG - Chr8:76007533-76007552 MsG0880046638.01.T01:intron 45.0%
! AAGTGCGGTTTTTGCGGTTT+CGG - Chr8:76006556-76006575 MsG0880046638.01.T01:CDS 45.0%
! CAAACCAAGTGCGGTTTTTG+CGG - Chr8:76006550-76006569 MsG0880046638.01.T01:CDS 45.0%
! CTGTTAGATAGTGGTCATCG+TGG - Chr8:76008289-76008308 MsG0880046638.01.T01:intron 45.0%
! GAGCTAGTGCTGTTAGATAG+TGG - Chr8:76008280-76008299 MsG0880046638.01.T01:intron 45.0%
! GAGGAGCGTAGAATCAATAG+AGG - Chr8:76009471-76009490 MsG0880046638.01.T01:intron 45.0%
! GATGTGTGGTAGTTTGCACA+CGG - Chr8:76007422-76007441 MsG0880046638.01.T01:intron 45.0%
! GATTCCTTGTATTTTCCCGG+AGG + Chr8:76007805-76007824 None:intergenic 45.0%
! GCAGATGATGTAGTCTTGCT+TGG + Chr8:76006920-76006939 None:intergenic 45.0%
! TTCCTTGTATTTTCCCGGAG+GGG + Chr8:76007803-76007822 None:intergenic 45.0%
!! CTGAAACTGACCTGCTTTTC+AGG - Chr8:76009701-76009720 MsG0880046638.01.T01:intron 45.0%
!! GGTTTCGGTTTGGATTGGTT+TGG - Chr8:76006571-76006590 MsG0880046638.01.T01:CDS 45.0%
!! GTTTCGTTTTGGTCTGCAAG+AGG + Chr8:76007517-76007536 None:intergenic 45.0%
!! TACATCTCGGTGCTAACTCT+TGG - Chr8:76006948-76006967 MsG0880046638.01.T01:CDS 45.0%
!! TCTGGCAGTTTATGGTGGAT+TGG + Chr8:76008405-76008424 None:intergenic 45.0%
!! TGGCTAGTTTCGTACAAAGG+AGG - Chr8:76009515-76009534 MsG0880046638.01.T01:intron 45.0%
!! TTTGCGGTTTCGGTTTGGAT+TGG - Chr8:76006566-76006585 MsG0880046638.01.T01:CDS 45.0%
!!! TTTTTTGGAGAGGAAAGCGG+TGG + Chr8:76007674-76007693 None:intergenic 45.0%
!! AAAAAAAAAAAAAAAAAAGA+AGG - Chr8:76007399-76007418 MsG0880046638.01.T01:intron 5.0%
!! AAAAAAAAAAAAAAAAAGAA+GGG - Chr8:76007400-76007419 MsG0880046638.01.T01:intron 5.0%
ACCCAGCTAGTTACCAGAAG+AGG + Chr8:76009142-76009161 None:intergenic 50.0%
ACTAGGAAGGAGGAAGCTGA+AGG - Chr8:76008200-76008219 MsG0880046638.01.T01:intron 50.0%
ACTCCGTCTTGCTTCTACTC+AGG - Chr8:76006827-76006846 MsG0880046638.01.T01:CDS 50.0%
ACTGATGTTGCAGTGGTGTC+TGG + Chr8:76008423-76008442 None:intergenic 50.0%
AGCACATTCTTGACCCATGG+TGG + Chr8:76009592-76009611 None:intergenic 50.0%
AGCATGTTATGTGAACGCGC+CGG + Chr8:76007555-76007574 None:intergenic 50.0%
AGGAAAGCGGTGGCGAAATT+GGG + Chr8:76007664-76007683 None:intergenic 50.0%
CAACTGTCACTCTGTCGAAG+AGG - Chr8:76008946-76008965 MsG0880046638.01.T01:intron 50.0%
CACATTCTTGACCCATGGTG+GGG + Chr8:76009590-76009609 None:intergenic 50.0%
CAGTGGTGTCTGGCAGTTTA+TGG + Chr8:76008413-76008432 None:intergenic 50.0%
CATCCTGAAGGTGGAAAAGG+AGG + Chr8:76008519-76008538 None:intergenic 50.0%
CGAAACTTGGCGAAACGTTG+TGG + Chr8:76007828-76007847 None:intergenic 50.0%
CGCAAAAACCGCACTTGGTT+TGG + Chr8:76006552-76006571 None:intergenic 50.0%
CTAGCTCAACAACCTGTGCT+TGG + Chr8:76008267-76008286 None:intergenic 50.0%
CTCTTCGACAGAGTGACAGT+TGG + Chr8:76008948-76008967 None:intergenic 50.0%
GAAACCGCAAAAACCGCACT+TGG + Chr8:76006557-76006576 None:intergenic 50.0%
GATGTACTAGAGCCAAGCAC+AGG - Chr8:76008252-76008271 MsG0880046638.01.T01:intron 50.0%
GCACATTCTTGACCCATGGT+GGG + Chr8:76009591-76009610 None:intergenic 50.0%
GCTAAGCAGGACGTCATTTC+AGG - Chr8:76008783-76008802 MsG0880046638.01.T01:intron 50.0%
GCTGTAGACACACCATATGG+AGG - Chr8:76007863-76007882 MsG0880046638.01.T01:intron 50.0%
GGAGAAGAGCCTCAGGTATT+AGG + Chr8:76006637-76006656 None:intergenic 50.0%
GTCCTCTTCTGGTAACTAGC+TGG - Chr8:76009137-76009156 MsG0880046638.01.T01:intron 50.0%
GTGAAGCCCATCTACCATTG+CGG - Chr8:76008338-76008357 MsG0880046638.01.T01:intron 50.0%
GTTTGGGAATTTAGGAGGGG+AGG - Chr8:76008169-76008188 MsG0880046638.01.T01:intron 50.0%
TCTTCTGGTAACTAGCTGGG+TGG - Chr8:76009141-76009160 MsG0880046638.01.T01:intron 50.0%
TGAAGGTGGAAAAGGAGGGT+GGG + Chr8:76008514-76008533 None:intergenic 50.0%
TGAGTCGAGGGAGGAGTAAT+GGG + Chr8:76006897-76006916 None:intergenic 50.0%
TGCAACCTATAGTGCCGCAA+TGG + Chr8:76008355-76008374 None:intergenic 50.0%
TGCGCTGTAGACACACCATA+TGG - Chr8:76007860-76007879 MsG0880046638.01.T01:intron 50.0%
TGGTAACTAGCTGGGTGGTT+TGG - Chr8:76009146-76009165 MsG0880046638.01.T01:intron 50.0%
TGGTGTCTGGCAGTTTATGG+TGG + Chr8:76008410-76008429 None:intergenic 50.0%
TTATGTGAACGCGCCGGAAA+AGG + Chr8:76007549-76007568 None:intergenic 50.0%
! AAGGATAGAGGGAAGGCATG+CGG - Chr8:76008832-76008851 MsG0880046638.01.T01:intron 50.0%
! AGGCAAGCCTTAGAAGCGTA+TGG + Chr8:76006859-76006878 None:intergenic 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG + Chr8:76006909-76006928 None:intergenic 50.0%
! CGGTTTTTGCGGTTTCGGTT+TGG - Chr8:76006561-76006580 MsG0880046638.01.T01:CDS 50.0%
! GGAACGCGTTCGTTTCGTTT+TGG + Chr8:76007528-76007547 None:intergenic 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG + Chr8:76006910-76006929 None:intergenic 50.0%
AAGTTGAGGAGTCCCCACCA+TGG - Chr8:76009575-76009594 MsG0880046638.01.T01:intron 55.0%
AATGCTCCAGCCACCCATGA+AGG + Chr8:76009671-76009690 None:intergenic 55.0%
AGTTGAGGAGTCCCCACCAT+GGG - Chr8:76009576-76009595 MsG0880046638.01.T01:intron 55.0%
CACACGGCGCATTCTAGCAT+TGG - Chr8:76007438-76007457 MsG0880046638.01.T01:intron 55.0%
CATGGCTAACACCAAGGCGT+CGG + Chr8:76009387-76009406 None:intergenic 55.0%
CCGCCTGAGTAGAAGCAAGA+CGG + Chr8:76006833-76006852 None:intergenic 55.0%
CCGTCTTGCTTCTACTCAGG+CGG - Chr8:76006830-76006849 MsG0880046638.01.T01:CDS 55.0%
CTGAAGGTGGAAAAGGAGGG+TGG + Chr8:76008515-76008534 None:intergenic 55.0%
GAGGAAAGCGGTGGCGAAAT+TGG + Chr8:76007665-76007684 None:intergenic 55.0%
GCGGAAGCCATACGCTTCTA+AGG - Chr8:76006849-76006868 MsG0880046638.01.T01:CDS 55.0%
GGAGAAGTGGTCTACCTTGG+AGG + Chr8:76006783-76006802 None:intergenic 55.0%
GTGAGTCGAGGGAGGAGTAA+TGG + Chr8:76006898-76006917 None:intergenic 55.0%
TCTTTGCCTTCATGGGTGGC+TGG - Chr8:76009662-76009681 MsG0880046638.01.T01:intron 55.0%
! ACGGCGCATTCTAGCATTGG+AGG - Chr8:76007441-76007460 MsG0880046638.01.T01:intron 55.0%
! AGGATAGAGGGAAGGCATGC+GGG - Chr8:76008833-76008852 MsG0880046638.01.T01:intron 55.0%
! CACCCTCCTTTTCCACCTTC+AGG - Chr8:76008513-76008532 MsG0880046638.01.T01:intron 55.0%
! GACTTTTGCACTGAACCGCG+CGG + Chr8:76006517-76006536 None:intergenic 55.0%
! GGAGCACTCTCCCTGTTGTA+TGG + Chr8:76008874-76008893 None:intergenic 55.0%
! GTAATGGGAGGCTAGAGACC+TGG + Chr8:76006882-76006901 None:intergenic 55.0%
!! CGTTTTGGTCTGCAAGAGGG+AGG + Chr8:76007513-76007532 None:intergenic 55.0%
!! CTAACACCAAGGCGTCGGTA+AGG + Chr8:76009382-76009401 None:intergenic 55.0%
ATGGGAGGCTAGAGACCTGG+AGG + Chr8:76006879-76006898 None:intergenic 60.0%
GGAAAAGGAGGGTGGGAGCA+AGG + Chr8:76008507-76008526 None:intergenic 60.0%
GGCCCCTCCGGGAAAATACA+AGG - Chr8:76007798-76007817 MsG0880046638.01.T01:intron 60.0%
TGGGATCCTTACCGACGCCT+TGG - Chr8:76009373-76009392 MsG0880046638.01.T01:intron 60.0%
TTGCACTGAACCGCGCGGTT+CGG + Chr8:76006512-76006531 None:intergenic 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG + Chr8:76006906-76006925 None:intergenic 60.0%
! GATAGAGGGAAGGCATGCGG+GGG - Chr8:76008835-76008854 MsG0880046638.01.T01:intron 60.0%
! GGATAGAGGGAAGGCATGCG+GGG - Chr8:76008834-76008853 MsG0880046638.01.T01:intron 60.0%
! GTCGAGGGAGGAGTAATGGG+AGG + Chr8:76006894-76006913 None:intergenic 60.0%
!! CGCTTCTAAGGCTTGCCTCC+AGG - Chr8:76006861-76006880 MsG0880046638.01.T01:CDS 60.0%
!! TTTGGTTCTGCAGGCCCCTC+CGG - Chr8:76007786-76007805 MsG0880046638.01.T01:intron 60.0%
GCAAACCGAACCGAACCGCG+CGG - Chr8:76006499-76006518 MsG0880046638.01.T01:CDS 65.0%
!! CTGAACCGCGCGGTTCGGTT+CGG + Chr8:76006507-76006526 None:intergenic 65.0%
!! GCGCGGTTCGGTTCGGTTTG+CGG + Chr8:76006500-76006519 None:intergenic 65.0%
!! TTGGTTCTGCAGGCCCCTCC+GGG - Chr8:76007787-76007806 MsG0880046638.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 76006490 76009816 76006490 ID=MsG0880046638.01;Name=MsG0880046638.01
Chr8 mRNA 76006490 76009816 76006490 ID=MsG0880046638.01.T01;Parent=MsG0880046638.01;Name=MsG0880046638.01.T01;_AED=0.52;_eAED=0.64;_QI=0|0|0|0.66|0|0|3|0|261
Chr8 exon 76009719 76009816 76009719 ID=MsG0880046638.01.T01:exon:32432;Parent=MsG0880046638.01.T01
Chr8 exon 76008375 76008507 76008375 ID=MsG0880046638.01.T01:exon:32431;Parent=MsG0880046638.01.T01
Chr8 exon 76006490 76007044 76006490 ID=MsG0880046638.01.T01:exon:32430;Parent=MsG0880046638.01.T01
Chr8 CDS 76009719 76009816 76009719 ID=MsG0880046638.01.T01:cds;Parent=MsG0880046638.01.T01
Chr8 CDS 76008375 76008507 76008375 ID=MsG0880046638.01.T01:cds;Parent=MsG0880046638.01.T01
Chr8 CDS 76006490 76007044 76006490 ID=MsG0880046638.01.T01:cds;Parent=MsG0880046638.01.T01
Gene Sequence

>MsG0880046638.01.T01

ATGCAAACCGCAAACCGAACCGAACCGCGCGGTTCAGTGCAAAAGTCATCCGAATTCATCCAAACCAAGTGCGGTTTTTGCGGTTTCGGTTTGGATTGGCCCCTCCGGGAAAATACAAGGAATCCCACAACGTTTCGCCAAGTTTCGTTTCGTACTAAGTGCGCTGTAGACACACCATATGGAGGTATCACCTATGTTTTTTCTTCGAATTTATTTGACTATTGCTACTTGTTACACTTCTCTGTCTTCTATTTTCCACCTTATGGAATAAATAATTTATATGTGTGCATACGTGCATCCTTTTATACAGGTAATGTCCCAAAATTCCCCAGAGTTAGTGTTTGGGATCCTTACCGACGCCTTGGTGTTAGCCATGATGCTTCTGAAGAAGAAATTTGGGGGTCAAGAAATTTTCTGTTGCAACAGTATGCTGGACATGAGAGGAGCGTAGAATCAATAGAGGCTGCTTTTGAAAAAATATTGATGGCTAGTTTCGTACAAAGGAGGAAAACAAAAATTAATTTGAAAAGCAAGTTGAAGAAGAAAGTTGAGGAGTCCCCACCATGGGTCAAGAATGTGCTAAACATTGTTGAATTTCCACCAACTGAAATTATCCTCAGAAGATTGTTTCTCTTTGCCTTCATGGGTGGCTGGAGCATTATGAATTCTGCTGAAACTGACCTGCTTTTCAGGTTTGATTTGAATTTCTTTCATTATTTCTTTTTGTGCAGTGTATACTCTCAATGCACAACTCTTGAACATTGTATTTTATATATAAAAAAATAA

Protein sequence

>MsG0880046638.01.T01

MQTANRTEPRGSVQKSSEFIQTKCGFCGFGLDWPLRENTRNPTTFRQVSFRTKCAVDTPYGGITYVFSSNLFDYCYLLHFSVFYFPPYGINNLYVCIRASFYTGNVPKFPRVSVWDPYRRLGVSHDASEEEIWGSRNFLLQQYAGHERSVESIEAAFEKILMASFVQRRKTKINLKSKLKKKVEESPPWVKNVLNIVEFPPTEIILRRLFLFAFMGGWSIMNSAETDLLFRFDLNFFHYFFLCSVYSQCTTLEHCILYIKK*