Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240600 | XP_013462997.2 | 83.607 | 122 | 20 | 0 | 1 | 122 | 1 | 122 | 2.33e-59 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240600 | sp|O82415|TYDC_PAPSO | 67.200 | 125 | 33 | 2 | 2 | 122 | 18 | 138 | 7.53e-50 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240600 | A0A396J8B4 | 83.607 | 122 | 20 | 0 | 1 | 122 | 1 | 122 | 1.11e-59 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0240600 | 0.816609 | 5.063998e-52 | -8.615850e-47 |
| Msa0024500 | Msa0240600 | 0.812674 | 3.763678e-51 | -8.615850e-47 |
| Msa0030760 | Msa0240600 | 0.803507 | 3.372579e-49 | -8.615850e-47 |
| Msa0039590 | Msa0240600 | 0.819178 | 1.331292e-52 | -8.615850e-47 |
| Msa0089470 | Msa0240600 | 0.804620 | 1.979753e-49 | -8.615850e-47 |
| Msa0120320 | Msa0240600 | 0.830203 | 3.350990e-55 | -8.615850e-47 |
| Msa0131090 | Msa0240600 | 0.804791 | 1.822753e-49 | -8.615850e-47 |
| Msa0147540 | Msa0240600 | 0.818373 | 2.027856e-52 | -8.615850e-47 |
| Msa0147800 | Msa0240600 | 0.812776 | 3.576224e-51 | -8.615850e-47 |
| Msa0163530 | Msa0240600 | 0.809132 | 2.200843e-50 | -8.615850e-47 |
| Msa0167150 | Msa0240600 | 0.800075 | 1.708593e-48 | -8.615850e-47 |
| Msa0178440 | Msa0240600 | 0.816206 | 6.231414e-52 | -8.615850e-47 |
| Msa0190470 | Msa0240600 | 0.801502 | 8.735129e-49 | -8.615850e-47 |
| Msa0194750 | Msa0240600 | 0.822147 | 2.766982e-53 | -8.615850e-47 |
| Msa0195140 | Msa0240600 | 0.864231 | 1.410799e-64 | -8.615850e-47 |
| Msa0195150 | Msa0240600 | 0.813469 | 2.519635e-51 | -8.615850e-47 |
| Msa0197600 | Msa0240600 | 0.815787 | 7.728735e-52 | -8.615850e-47 |
| Msa0208710 | Msa0240600 | 0.802509 | 5.425428e-49 | -8.615850e-47 |
| Msa0209370 | Msa0240600 | 0.802798 | 4.729227e-49 | -8.615850e-47 |
| Msa0218430 | Msa0240600 | 0.813074 | 3.076209e-51 | -8.615850e-47 |
| Msa0225070 | Msa0240600 | 0.814565 | 1.444056e-51 | -8.615850e-47 |
| Msa0227970 | Msa0240600 | 0.806861 | 6.696671e-50 | -8.615850e-47 |
| Msa0236690 | Msa0240600 | 0.828322 | 9.588010e-55 | -8.615850e-47 |
| Msa0240590 | Msa0240600 | 0.854952 | 8.736638e-62 | -8.615850e-47 |
| Msa0240600 | Msa0266140 | 0.808847 | 2.532609e-50 | -8.615850e-47 |
| Msa0240600 | Msa0267450 | 0.803788 | 2.949497e-49 | -8.615850e-47 |
| Msa0240600 | Msa0267510 | 0.804719 | 1.887748e-49 | -8.615850e-47 |
| Msa0240600 | Msa0269430 | 0.806587 | 7.652269e-50 | -8.615850e-47 |
| Msa0240600 | Msa0269660 | 0.823242 | 1.539317e-53 | -8.615850e-47 |
| Msa0240600 | Msa0279090 | 0.843285 | 1.538912e-58 | -8.615850e-47 |
| Msa0240600 | Msa0304060 | 0.815751 | 7.875145e-52 | -8.615850e-47 |
| Msa0240600 | Msa0308300 | 0.810850 | 9.391365e-51 | -8.615850e-47 |
| Msa0240600 | Msa0339540 | -0.815464 | 9.121462e-52 | -8.615850e-47 |
| Msa0240600 | Msa0340870 | 0.801036 | 1.088404e-48 | -8.615850e-47 |
| Msa0240600 | Msa0364910 | 0.803470 | 3.433343e-49 | -8.615850e-47 |
| Msa0240600 | Msa0365350 | 0.807976 | 3.884460e-50 | -8.615850e-47 |
| Msa0240600 | Msa0367590 | 0.801253 | 9.822608e-49 | -8.615850e-47 |
| Msa0240600 | Msa0404330 | 0.802215 | 6.234487e-49 | -8.615850e-47 |
| Msa0240600 | Msa0412580 | 0.802377 | 5.774075e-49 | -8.615850e-47 |
| Msa0240600 | Msa0450890 | 0.807100 | 5.960182e-50 | -8.615850e-47 |
| Msa0240600 | Msa0457070 | 0.815188 | 1.050699e-51 | -8.615850e-47 |
| Msa0240600 | Msa0459920 | 0.801401 | 9.163978e-49 | -8.615850e-47 |
| Msa0240600 | Msa0469770 | 0.802960 | 4.378260e-49 | -8.615850e-47 |
| Msa0240600 | Msa0471130 | 0.804597 | 2.001065e-49 | -8.615850e-47 |
| Msa0240600 | Msa0515400 | 0.800546 | 1.369785e-48 | -8.615850e-47 |
| Msa0240600 | Msa0533140 | 0.822775 | 1.977787e-53 | -8.615850e-47 |
| Msa0240600 | Msa0538050 | 0.803748 | 3.005882e-49 | -8.615850e-47 |
| Msa0240600 | Msa0554410 | 0.818238 | 2.175926e-52 | -8.615850e-47 |
| Msa0240600 | Msa0555510 | 0.821191 | 4.602577e-53 | -8.615850e-47 |
| Msa0240600 | Msa0565530 | 0.800619 | 1.323759e-48 | -8.615850e-47 |
| Msa0240600 | Msa0579230 | 0.801625 | 8.242195e-49 | -8.615850e-47 |
| Msa0240600 | Msa0585720 | 0.805202 | 1.495955e-49 | -8.615850e-47 |
| Msa0240600 | Msa0587070 | 0.808151 | 3.565749e-50 | -8.615850e-47 |
| Msa0240600 | Msa0608940 | 0.825470 | 4.605523e-54 | -8.615850e-47 |
| Msa0240600 | Msa0625900 | 0.808015 | 3.810893e-50 | -8.615850e-47 |
| Msa0240600 | Msa0626900 | 0.808239 | 3.414997e-50 | -8.615850e-47 |
| Msa0240600 | Msa0647860 | 0.819301 | 1.248093e-52 | -8.615850e-47 |
| Msa0240600 | Msa0648160 | 0.819448 | 1.155381e-52 | -8.615850e-47 |
| Msa0240600 | Msa0648170 | 0.803682 | 3.102854e-49 | -8.615850e-47 |
| Msa0240600 | Msa0648260 | 0.826162 | 3.156243e-54 | -8.615850e-47 |
| Msa0240600 | Msa0649530 | 0.831977 | 1.229490e-55 | -8.615850e-47 |
| Msa0240600 | Msa0654880 | 0.802045 | 6.758217e-49 | -8.615850e-47 |
| Msa0240600 | Msa0662670 | 0.807643 | 4.572776e-50 | -8.615850e-47 |
| Msa0240600 | Msa0663580 | 0.804115 | 2.521691e-49 | -8.615850e-47 |
| Msa0240600 | Msa0663690 | 0.804453 | 2.144397e-49 | -8.615850e-47 |
| Msa0240600 | Msa0690580 | 0.815794 | 7.700973e-52 | -8.615850e-47 |
| Msa0240600 | Msa0691740 | 0.837112 | 6.297530e-57 | -8.615850e-47 |
| Msa0240600 | Msa0698480 | 0.802922 | 4.458099e-49 | -8.615850e-47 |
| Msa0240600 | Msa0698650 | 0.800364 | 1.491791e-48 | -8.615850e-47 |
| Msa0240600 | Msa0702020 | 0.803715 | 3.053681e-49 | -8.615850e-47 |
| Msa0240600 | Msa0708870 | 0.807308 | 5.386740e-50 | -8.615850e-47 |
| Msa0240600 | Msa0717540 | 0.800452 | 1.432056e-48 | -8.615850e-47 |
| Msa0240600 | Msa0730250 | 0.809473 | 1.859473e-50 | -8.615850e-47 |
| Msa0240600 | Msa0733240 | 0.811039 | 8.546338e-51 | -8.615850e-47 |
| Msa0240600 | Msa0754020 | 0.816732 | 4.752627e-52 | -8.615850e-47 |
| Msa0240600 | Msa0770540 | 0.817451 | 3.274960e-52 | -8.615850e-47 |
| Msa0240600 | Msa0772160 | 0.817134 | 3.859533e-52 | -8.615850e-47 |
| Msa0240600 | Msa0774360 | 0.805158 | 1.527703e-49 | -8.615850e-47 |
| Msa0240600 | Msa0797980 | 0.800927 | 1.145511e-48 | -8.615850e-47 |
| Msa0240600 | Msa0807100 | 0.818438 | 1.960034e-52 | -8.615850e-47 |
| Msa0240600 | Msa0831460 | 0.801406 | 9.139068e-49 | -8.615850e-47 |
| Msa0240600 | Msa0833030 | 0.814529 | 1.471105e-51 | -8.615850e-47 |
| Msa0240600 | Msa0852090 | 0.812005 | 5.269601e-51 | -8.615850e-47 |
| Msa0240600 | Msa0876030 | 0.832960 | 7.015024e-56 | -8.615850e-47 |
| Msa0240600 | Msa0917630 | 0.827941 | 1.184288e-54 | -8.615850e-47 |
| Msa0240600 | Msa0925630 | 0.822003 | 2.987874e-53 | -8.615850e-47 |
| Msa0240600 | Msa0927890 | 0.803134 | 4.029226e-49 | -8.615850e-47 |
| Msa0240600 | Msa0938370 | 0.804442 | 2.156089e-49 | -8.615850e-47 |
| Msa0240600 | Msa0967250 | 0.801781 | 7.656176e-49 | -8.615850e-47 |
| Msa0240600 | Msa0967900 | 0.819898 | 9.116650e-53 | -8.615850e-47 |
| Msa0240600 | Msa0975440 | 0.811470 | 6.890427e-51 | -8.615850e-47 |
| Msa0240600 | Msa0978290 | 0.802977 | 4.342629e-49 | -8.615850e-47 |
| Msa0240600 | Msa1031530 | 0.817911 | 2.580010e-52 | -8.615850e-47 |
| Msa0240600 | Msa1040030 | 0.811059 | 8.461128e-51 | -8.615850e-47 |
| Msa0240600 | Msa1043020 | 0.823577 | 1.284884e-53 | -8.615850e-47 |
| Msa0240600 | Msa1044050 | 0.800886 | 1.167945e-48 | -8.615850e-47 |
| Msa0240600 | Msa1052030 | 0.805602 | 1.233003e-49 | -8.615850e-47 |
| Msa0240600 | Msa1070630 | 0.820858 | 5.491342e-53 | -8.615850e-47 |
| Msa0240600 | Msa1074560 | -0.819883 | 9.193316e-53 | -8.615850e-47 |
| Msa0240600 | Msa1078590 | 0.816795 | 4.599710e-52 | -8.615850e-47 |
| Msa0240600 | Msa1078600 | 0.809049 | 2.292660e-50 | -8.615850e-47 |
| Msa0240600 | Msa1078760 | 0.821145 | 4.716839e-53 | -8.615850e-47 |
| Msa0240600 | Msa1078770 | 0.807342 | 5.296585e-50 | -8.615850e-47 |
| Msa0240600 | Msa1084210 | 0.812780 | 3.568579e-51 | -8.615850e-47 |
| Msa0240600 | Msa1088740 | 0.806593 | 7.627759e-50 | -8.615850e-47 |
| Msa0240600 | Msa1096510 | 0.803813 | 2.913971e-49 | -8.615850e-47 |
| Msa0240600 | Msa1096520 | 0.811051 | 8.493738e-51 | -8.615850e-47 |
| Msa0240600 | Msa1096570 | 0.821423 | 4.070496e-53 | -8.615850e-47 |
| Msa0240600 | Msa1098470 | 0.822385 | 2.437115e-53 | -8.615850e-47 |
| Msa0240600 | Msa1109500 | 0.810559 | 1.085503e-50 | -8.615850e-47 |
| Msa0240600 | Msa1116950 | 0.803545 | 3.312519e-49 | -8.615850e-47 |
| Msa0240600 | Msa1128230 | 0.808102 | 3.651544e-50 | -8.615850e-47 |
| Msa0240600 | Msa1143860 | 0.820360 | 7.147382e-53 | -8.615850e-47 |
| Msa0240600 | Msa1158450 | 0.822712 | 2.045526e-53 | -8.615850e-47 |
| Msa0240600 | Msa1169590 | 0.809152 | 2.179123e-50 | -8.615850e-47 |
| Msa0240600 | Msa1169600 | 0.809189 | 2.139736e-50 | -8.615850e-47 |
| Msa0240600 | Msa1175850 | 0.824311 | 8.644041e-54 | -8.615850e-47 |
| Msa0240600 | Msa1181730 | 0.800721 | 1.262191e-48 | -8.615850e-47 |
| Msa0240600 | Msa1182400 | 0.800222 | 1.594890e-48 | -8.615850e-47 |
| Msa0240600 | Msa1190350 | 0.813704 | 2.236623e-51 | -8.615850e-47 |
| Msa0240600 | Msa1203840 | 0.806980 | 6.319124e-50 | -8.615850e-47 |
| Msa0240600 | Msa1207710 | 0.804355 | 2.248460e-49 | -8.615850e-47 |
| Msa0240600 | Msa1207760 | 0.809593 | 1.752615e-50 | -8.615850e-47 |
| Msa0240600 | Msa1225140 | 0.820372 | 7.101707e-53 | -8.615850e-47 |
| Msa0240600 | Msa1228600 | 0.815768 | 7.806072e-52 | -8.615850e-47 |
| Msa0240600 | Msa1229880 | 0.818293 | 2.114300e-52 | -8.615850e-47 |
| Msa0240600 | Msa1230190 | 0.801513 | 8.690638e-49 | -8.615850e-47 |
| Msa0240600 | Msa1235940 | 0.801930 | 7.136927e-49 | -8.615850e-47 |
| Msa0240600 | Msa1244220 | 0.800308 | 1.532026e-48 | -8.615850e-47 |
| Msa0240600 | Msa1257960 | 0.805453 | 1.325125e-49 | -8.615850e-47 |
| Msa0240600 | Msa1260520 | 0.802577 | 5.251451e-49 | -8.615850e-47 |
| Msa0240600 | Msa1266120 | 0.802886 | 4.534344e-49 | -8.615850e-47 |
| Msa0240600 | Msa1272770 | 0.807379 | 5.202501e-50 | -8.615850e-47 |
| Msa0240600 | Msa1277580 | 0.804475 | 2.121865e-49 | -8.615850e-47 |
| Msa0240600 | Msa1279200 | 0.800468 | 1.421284e-48 | -8.615850e-47 |
| Msa0240600 | Msa1279320 | 0.818518 | 1.880075e-52 | -8.615850e-47 |
| Msa0240600 | Msa1295220 | 0.804979 | 1.665128e-49 | -8.615850e-47 |
| Msa0240600 | Msa1296270 | 0.807631 | 4.599422e-50 | -8.615850e-47 |
| Msa0240600 | Msa1298980 | 0.801685 | 8.013437e-49 | -8.615850e-47 |
| Msa0240600 | Msa1310620 | 0.818644 | 1.760223e-52 | -8.615850e-47 |
| Msa0240600 | Msa1323260 | 0.810669 | 1.027518e-50 | -8.615850e-47 |
| Msa0240600 | Msa1327690 | 0.801165 | 1.024283e-48 | -8.615850e-47 |
| Msa0240600 | Msa1330910 | 0.806966 | 6.363982e-50 | -8.615850e-47 |
| Msa0240600 | Msa1343450 | 0.801194 | 1.010365e-48 | -8.615850e-47 |
| Msa0240600 | Msa1346220 | 0.800845 | 1.190465e-48 | -8.615850e-47 |
| Msa0240600 | Msa1346340 | 0.807486 | 4.937755e-50 | -8.615850e-47 |
| Msa0240600 | Msa1348860 | 0.815064 | 1.119173e-51 | -8.615850e-47 |
| Msa0240600 | Msa1356730 | 0.817194 | 3.741968e-52 | -8.615850e-47 |
| Msa0240600 | Msa1368800 | 0.818180 | 2.242228e-52 | -8.615850e-47 |
| Msa0240600 | Msa1376010 | 0.819880 | 9.207279e-53 | -8.615850e-47 |
| Msa0240600 | Msa1378840 | 0.823098 | 1.662625e-53 | -8.615850e-47 |
| Msa0240600 | Msa1379270 | 0.804805 | 1.811295e-49 | -8.615850e-47 |
| Msa0240600 | Msa1382100 | 0.822010 | 2.977370e-53 | -8.615850e-47 |
| Msa0240600 | Msa1384410 | 0.803388 | 3.570451e-49 | -8.615850e-47 |
| Msa0240600 | Msa1408860 | 0.818562 | 1.836913e-52 | -8.615850e-47 |
| Msa0240600 | Msa1414780 | 0.816264 | 6.047828e-52 | -8.615850e-47 |
| Msa0240600 | Msa1418840 | 0.820078 | 8.295373e-53 | -8.615850e-47 |
| Msa0240600 | Msa1422160 | 0.802477 | 5.507633e-49 | -8.615850e-47 |
| Msa0240600 | Msa1432250 | 0.804144 | 2.486843e-49 | -8.615850e-47 |
| Msa0240600 | Msa1435950 | 0.816075 | 6.664858e-52 | -8.615850e-47 |
| Msa0240600 | Msa1436660 | 0.820389 | 7.037842e-53 | -8.615850e-47 |
| Msa0240600 | Msa1443440 | 0.803669 | 3.122190e-49 | -8.615850e-47 |
| Msa0240600 | Msa1450780 | 0.819782 | 9.691714e-53 | -8.615850e-47 |
| Msa0240600 | Msa1450850 | 0.807061 | 6.075976e-50 | -8.615850e-47 |
| Msa0240600 | Msa1453180 | 0.812596 | 3.914846e-51 | -8.615850e-47 |
| Msa0240600 | Msa1460530 | 0.801706 | 7.934538e-49 | -8.615850e-47 |
| Msa0240600 | Msa1463500 | 0.808337 | 3.254550e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240600 | MtrunA17_Chr2g0292021 | 83.607 | 122 | 20 | 0 | 1 | 122 | 1 | 122 | 2.14e-63 | 201 |
| Msa0240600 | MtrunA17_Chr2g0292011 | 82.787 | 122 | 21 | 0 | 1 | 122 | 1 | 122 | 6.98e-63 | 199 |
| Msa0240600 | MtrunA17_Chr7g0237461 | 81.967 | 122 | 22 | 0 | 1 | 122 | 1 | 122 | 2.37e-62 | 198 |
| Msa0240600 | MtrunA17_Chr8g0347561 | 66.393 | 122 | 41 | 0 | 1 | 122 | 22 | 143 | 1.30e-50 | 167 |
| Msa0240600 | MtrunA17_Chr7g0262201 | 55.462 | 119 | 53 | 0 | 4 | 122 | 1 | 119 | 1.41e-42 | 145 |
| Msa0240600 | MtrunA17_Chr7g0262211 | 54.098 | 122 | 56 | 0 | 1 | 122 | 24 | 145 | 1.44e-42 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0240600 | AT2G20340.2 | 47.541 | 122 | 64 | 0 | 1 | 122 | 9 | 130 | 3.45e-39 | 136 |
| Msa0240600 | AT2G20340.1 | 47.541 | 122 | 64 | 0 | 1 | 122 | 9 | 130 | 7.20e-39 | 136 |
| Msa0240600 | AT4G28680.6 | 50.000 | 126 | 59 | 1 | 1 | 122 | 48 | 173 | 2.58e-37 | 130 |
| Msa0240600 | AT4G28680.7 | 50.000 | 126 | 59 | 1 | 1 | 122 | 48 | 173 | 4.52e-37 | 130 |
| Msa0240600 | AT4G28680.4 | 50.000 | 126 | 59 | 1 | 1 | 122 | 48 | 173 | 4.74e-37 | 132 |
| Msa0240600 | AT4G28680.3 | 50.000 | 126 | 59 | 1 | 1 | 122 | 57 | 182 | 5.39e-37 | 132 |
| Msa0240600 | AT4G28680.2 | 50.000 | 126 | 59 | 1 | 1 | 122 | 57 | 182 | 5.84e-37 | 132 |
| Msa0240600 | AT4G28680.1 | 50.000 | 126 | 59 | 1 | 1 | 122 | 57 | 182 | 6.56e-37 | 131 |
| Msa0240600 | AT4G28680.5 | 50.000 | 126 | 59 | 1 | 1 | 122 | 48 | 173 | 9.30e-37 | 131 |
Find 20 sgRNAs with CRISPR-Local
Find 28 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGCACAGCAGGGTTCTT+AGG | 0.266911 | 2_2:-15951766 | Msa0240600:CDS |
| GGAAAATAAGCAAAGTAATT+AGG | 0.271671 | 2_2:+15951796 | None:intergenic |
| CAAGGATGGTTTCAATATAT+AGG | 0.339574 | 2_2:+15951866 | None:intergenic |
| CCTGCTGTGCTACCACTTGA+TGG | 0.350739 | 2_2:+15951775 | None:intergenic |
| TTGAATTCTGTAGTATCTAG+TGG | 0.355450 | 2_2:+15952022 | None:intergenic |
| TGAATGTTGTTGGATTTAAC+TGG | 0.365518 | 2_2:-15951723 | Msa0240600:CDS |
| TGGTTTCAATATATAGGTTC+AGG | 0.384217 | 2_2:+15951872 | None:intergenic |
| CCATCAAGTGGTAGCACAGC+AGG | 0.386882 | 2_2:-15951775 | Msa0240600:CDS |
| AGCACTGGATTGAATGTTGT+TGG | 0.421179 | 2_2:-15951733 | Msa0240600:CDS |
| CTTTGCCAATGTATTATACC+TGG | 0.424206 | 2_2:+15951820 | None:intergenic |
| TTAGGAGAAATGTTAAGCAC+TGG | 0.472185 | 2_2:-15951748 | Msa0240600:CDS |
| AGTTTGGTTCTACTTGACTT+AGG | 0.478980 | 2_2:+15951933 | None:intergenic |
| TATATAGGTTCAGGATTTGA+AGG | 0.481064 | 2_2:+15951881 | None:intergenic |
| TGAATTCTGTAGTATCTAGT+GGG | 0.505218 | 2_2:+15952023 | None:intergenic |
| GGATTTGAAGGTGCAAAAGA+AGG | 0.506622 | 2_2:+15951893 | None:intergenic |
| GGTTCTACTTGACTTAGGAC+AGG | 0.523508 | 2_2:+15951938 | None:intergenic |
| TTTGCCAATGTATTATACCT+GGG | 0.574268 | 2_2:+15951821 | None:intergenic |
| TAATCCCAGGTATAATACAT+TGG | 0.593258 | 2_2:-15951825 | Msa0240600:CDS |
| CATCAAGTGGTAGCACAGCA+GGG | 0.607312 | 2_2:-15951774 | Msa0240600:CDS |
| ACTACAGAATTCAAGAAACA+AGG | 0.665050 | 2_2:-15952013 | Msa0240600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTTTCATAATAATCAGCT+AGG | + | chr2_2:15951731-15951750 | None:intergenic | 25.0% |
| !!! | TTTTTGATAATCTTCAAGGA+TGG | + | chr2_2:15951851-15951870 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTGATAATCTTCA+AGG | + | chr2_2:15951855-15951874 | None:intergenic | 25.0% |
| ! | GGAAAATAAGCAAAGTAATT+AGG | + | chr2_2:15951907-15951926 | None:intergenic | 25.0% |
| TGAATTCTGTAGTATCTAGT+GGG | + | chr2_2:15951680-15951699 | None:intergenic | 30.0% | |
| TTGAATTCTGTAGTATCTAG+TGG | + | chr2_2:15951681-15951700 | None:intergenic | 30.0% | |
| ACTACAGAATTCAAGAAACA+AGG | - | chr2_2:15951687-15951706 | Msa0240600:CDS | 30.0% | |
| !!! | AACAGTTTTTTGAGGTAGTT+TGG | + | chr2_2:15951786-15951805 | None:intergenic | 30.0% |
| !!! | AAGAAGGTAACAGTTTTTTG+AGG | + | chr2_2:15951794-15951813 | None:intergenic | 30.0% |
| TATATAGGTTCAGGATTTGA+AGG | + | chr2_2:15951822-15951841 | None:intergenic | 30.0% | |
| TGGTTTCAATATATAGGTTC+AGG | + | chr2_2:15951831-15951850 | None:intergenic | 30.0% | |
| CAAGGATGGTTTCAATATAT+AGG | + | chr2_2:15951837-15951856 | None:intergenic | 30.0% | |
| TATCAAAAACACATAATCCC+AGG | - | chr2_2:15951862-15951881 | Msa0240600:CDS | 30.0% | |
| TAATCCCAGGTATAATACAT+TGG | - | chr2_2:15951875-15951894 | Msa0240600:CDS | 30.0% | |
| TTTGCCAATGTATTATACCT+GGG | + | chr2_2:15951882-15951901 | None:intergenic | 30.0% | |
| !! | TTTGCTTATTTTCCATCAAG+TGG | - | chr2_2:15951913-15951932 | Msa0240600:CDS | 30.0% |
| TGAATGTTGTTGGATTTAAC+TGG | - | chr2_2:15951977-15951996 | Msa0240600:CDS | 30.0% | |
| !! | AGTTTGGTTCTACTTGACTT+AGG | + | chr2_2:15951770-15951789 | None:intergenic | 35.0% |
| CTTTGCCAATGTATTATACC+TGG | + | chr2_2:15951883-15951902 | None:intergenic | 35.0% | |
| TTAGGAGAAATGTTAAGCAC+TGG | - | chr2_2:15951952-15951971 | Msa0240600:CDS | 35.0% | |
| ! | GGATTTGAAGGTGCAAAAGA+AGG | + | chr2_2:15951810-15951829 | None:intergenic | 40.0% |
| ! | AGCACTGGATTGAATGTTGT+TGG | - | chr2_2:15951967-15951986 | Msa0240600:CDS | 40.0% |
| !!! | TTTTCTAGTTCTGTTGCAGC+TGG | + | chr2_2:15952012-15952031 | None:intergenic | 40.0% |
| GGTTCTACTTGACTTAGGAC+AGG | + | chr2_2:15951765-15951784 | None:intergenic | 45.0% | |
| CATCAAGTGGTAGCACAGCA+GGG | - | chr2_2:15951926-15951945 | Msa0240600:intron | 50.0% | |
| CCTGCTGTGCTACCACTTGA+TGG | + | chr2_2:15951928-15951947 | None:intergenic | 55.0% | |
| CCATCAAGTGGTAGCACAGC+AGG | - | chr2_2:15951925-15951944 | Msa0240600:intron | 55.0% | |
| GGTAGCACAGCAGGGTTCTT+AGG | - | chr2_2:15951934-15951953 | Msa0240600:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 15951672 | 15952050 | 15951672 | ID=Msa0240600;Name=Msa0240600 |
| chr2_2 | mRNA | 15951672 | 15952050 | 15951672 | ID=Msa0240600-mRNA-1;Parent=Msa0240600;Name=Msa0240600-mRNA-1;_AED=0.45;_eAED=0.54;_QI=0|0|0|1|0|0|2|0|124 |
| chr2_2 | exon | 15951946 | 15952050 | 15951946 | ID=Msa0240600-mRNA-1:exon:6518;Parent=Msa0240600-mRNA-1 |
| chr2_2 | exon | 15951672 | 15951941 | 15951672 | ID=Msa0240600-mRNA-1:exon:6517;Parent=Msa0240600-mRNA-1 |
| chr2_2 | CDS | 15951946 | 15952050 | 15951946 | ID=Msa0240600-mRNA-1:cds;Parent=Msa0240600-mRNA-1 |
| chr2_2 | CDS | 15951672 | 15951941 | 15951672 | ID=Msa0240600-mRNA-1:cds;Parent=Msa0240600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
