AlfalfaGEDB | MS.gene36203

M. sativa cultivar XinJiangDaYe / MS.gene36203

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36203.t1	RHN45460.1	98.4	435	7	0	1	435	54	488	6.10E-208	733.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36203.t1	Q8GZ38	48.4	440	130	17	1	435	48	395	1.1e-48	195.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36203.t1	A0A396GWP6	98.4	435	7	0	1	435	54	488	4.4e-208	733.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene36203.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene36203	0.834732	2.53E-56	-1.69E-46
MS.gene049217	MS.gene36203	0.82172	3.47E-53	-1.69E-46
MS.gene049222	MS.gene36203	0.848631	5.42E-60	-1.69E-46
MS.gene049232	MS.gene36203	0.900547	6.57E-78	-1.69E-46
MS.gene049285	MS.gene36203	0.859512	3.93E-63	-1.69E-46
MS.gene049320	MS.gene36203	0.883661	3.71E-71	-1.69E-46
MS.gene049369	MS.gene36203	0.822343	2.49E-53	-1.69E-46
MS.gene049396	MS.gene36203	0.912589	1.64E-83	-1.69E-46
MS.gene049552	MS.gene36203	0.806864	6.69E-50	-1.69E-46
MS.gene049600	MS.gene36203	0.814616	1.41E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36203.t1	MTR_7g039110	98.227	282	5	0	1	282	54	335	0.0	575
MS.gene36203.t1	MTR_1g084980	51.351	111	50	2	215	322	434	543	1.93e-24	106
MS.gene36203.t1	MTR_7g099540	49.167	120	41	2	231	348	237	338	1.06e-23	103
MS.gene36203.t1	MTR_1g069155	59.341	91	31	2	231	318	301	388	3.34e-23	102
MS.gene36203.t1	MTR_1g019240	70.968	62	18	0	245	306	86	147	4.76e-23	98.2
MS.gene36203.t1	MTR_3g449770	40.237	169	65	5	213	380	281	414	1.66e-22	100
MS.gene36203.t1	MTR_7g099540	58.889	90	32	2	231	318	237	323	1.69e-22	99.8
MS.gene36203.t1	MTR_5g017040	41.129	124	59	3	254	376	115	225	6.79e-19	87.8
MS.gene36203.t1	MTR_7g111320	32.174	230	119	8	207	402	396	622	3.75e-18	87.4
MS.gene36203.t1	MTR_7g110810	33.735	166	86	4	230	378	181	339	7.65e-17	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene36203.t1	AT4G00050	45.012	431	138	18	1	425	48	385	1.57e-82	259
MS.gene36203.t1	AT4G00050	48.844	346	108	14	86	425	1	283	1.12e-76	241
MS.gene36203.t1	AT4G00050	43.794	427	139	19	1	419	48	381	8.32e-75	239
MS.gene36203.t1	AT2G20180	35.316	269	120	9	120	381	89	310	2.49e-26	110
MS.gene36203.t1	AT2G20180	35.316	269	120	9	120	381	89	310	2.49e-26	110
MS.gene36203.t1	AT2G20180	35.316	269	120	9	120	381	89	310	2.49e-26	110
MS.gene36203.t1	AT2G20180	35.316	269	120	9	120	381	160	381	6.84e-26	110
MS.gene36203.t1	AT2G20180	35.316	269	120	9	120	381	160	381	6.84e-26	110
MS.gene36203.t1	AT2G20180	35.316	269	120	9	120	381	160	381	6.84e-26	110
MS.gene36203.t1	AT2G20180	35.316	269	120	9	120	381	160	381	6.84e-26	110

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Find 174 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCACCATTTCTCGCCGG+TGG	0.621552	7.1:+55732079	MS.gene36203:CDS
AAATTTCTATGCATGGCTTA+GGG	0.469175	7.1:+55731924	None:intergenic
AACACCTTCCAAGGAAACAT+GGG	0.622242	7.1:+55731988	MS.gene36203:CDS
AACAGAATCATGATCGTCTA+CGG	0.554311	7.1:-55732569	None:intergenic
AATACACAACCAATCTGAAA+GGG	0.552633	7.1:+55734320	MS.gene36203:CDS
AATCATCAGTGTCCACTAAA+AGG	0.320838	7.1:+55734283	MS.gene36203:CDS
AATCCAATGGGCATGGGAAT+GGG	0.328179	7.1:+55737676	MS.gene36203:CDS
AATCCTACTATAAGCATCCA+TGG	0.589299	7.1:-55738792	None:intergenic
AATGAAGACATTGCAAAAGT+TGG	0.480140	7.1:+55734470	MS.gene36203:CDS
AATGCAGATGGGTGGAGAAC+CGG	0.455967	7.1:-55737793	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	55731932	55738857	55731932	ID=MS.gene36203
chr7.1	mRNA	55731932	55738857	55731932	ID=MS.gene36203.t1;Parent=MS.gene36203
chr7.1	exon	55731932	55732609	55731932	ID=MS.gene36203.t1.exon1;Parent=MS.gene36203.t1
chr7.1	CDS	55731932	55732609	55731932	ID=cds.MS.gene36203.t1;Parent=MS.gene36203.t1
chr7.1	exon	55734240	55734341	55734240	ID=MS.gene36203.t1.exon2;Parent=MS.gene36203.t1
chr7.1	CDS	55734240	55734341	55734240	ID=cds.MS.gene36203.t1;Parent=MS.gene36203.t1
chr7.1	exon	55734444	55734509	55734444	ID=MS.gene36203.t1.exon3;Parent=MS.gene36203.t1
chr7.1	CDS	55734444	55734509	55734444	ID=cds.MS.gene36203.t1;Parent=MS.gene36203.t1
chr7.1	exon	55737535	55737921	55737535	ID=MS.gene36203.t1.exon4;Parent=MS.gene36203.t1
chr7.1	CDS	55737535	55737921	55737535	ID=cds.MS.gene36203.t1;Parent=MS.gene36203.t1
chr7.1	exon	55738785	55738857	55738785	ID=MS.gene36203.t1.exon5;Parent=MS.gene36203.t1
chr7.1	CDS	55738785	55738857	55738785	ID=cds.MS.gene36203.t1;Parent=MS.gene36203.t1

Gene Sequence

>MS.gene36203

ATGCATGGCTTAGGGTTACCGAAAGTGCCGCATAAACATCCATCAACCGCAGGTACAACACCTTCCAAGGAAACATGGGAAAAGCCTCGTGGCAGTGGGACCTTGGAGTCTATAGTGAACCAAGCCACTAGCTTTCCGCACCGCGGAAAATCACCATTTCTCGCCGGTGGTGGTGTTTATGGAAACATGTTAGTCCCATGGCTTGACCCACAACGTGCTGCAGCCATCGCAGCTGCCACAGCCGCCAACAACGGCATGACGGTGGATGCGTTGGTTCCCTGCTCCAATACTACTAAGGAGCAGAGAATCCATGCAATGGATCCAGTCCCTAGATCAGGGATTGGATCATGCATGGTTGGCGGCCACACACCTGTGGGATCTTGCAGTGCTGTCGTGGCTGCAACGCAGGACGAAGGAGGCGTCCTTGCTGCGTCAGCGGCAAAGCGTGGGAGGGTGGCACACGTGGCGGGGAGTGGCAGGGACCAAAGTATGAGTGGCAGTGCAACCTTTGGGAGGCAGAGCCAGCAAGTGACACTTGATACGTACGATAGGGAATTTGGTATGACTGGTTTCACTTCAACTTCAATAGCTTCTATGGATAACACCAGCTCTGAGAAACAGTGCACCAGGACAACCACCGTAGACGATCATGATTCTGTTTGTCACAGTAGACCACCGGTAAGATTTTCACTCACATATATAATCGTGCTTTGTGTGTATTAATATGAATGATCATTGATTGGTTTGGTTTTATATATAAAGTGGCCAAGTACATGTTTAAGTATATAGGAAAAGTGATATCAAACCTTACTAGTTAGTTAAACTTATTTATCATAAAAAATTAGTATCAAACATTATTATATAGTATCTATCATCTCTATGCACCAATAGTATAAATTTTCAGAAATGATAAATGGACACAAAATAACATACACAAATACGACACCACCGTATTTTTACTGTTCACATATACTTTTTTTTTTTCCTCCCTTTCTCTGCTCGCATACTTCAGCTCTCCTCTTTCTCTCTCTCTCATTTGAAAAAACCTTCTCTGCAACTCTCTCCTCTGCAACTCTCACCGGCCACGAGGTGCTAGCGGCAGTGACTGGATTTCCGACGACAAGGATGGTGTGAGGGAGAGCAGATCCGAACAGTGTGATGGCGGTTGAGGATGGAAGGTGTTGTAACGCCGGTGGCGGTTATGACTGACGATGGCGGTGGTGGTTGGAACGAAGGTTGTGGTGGATCTGTGAGTTTCAGCAGTGACGGCCGTAGACAACGGAACAGTGGTTGTAGTGGAGAAGTCGAATCTGAACGGTTTGTAAAGGAAGGTGGGTGGTGTGTGGTGGGAGGGTGGTGGTGGCTGTTGAGAGAGACAGAGAGGAGCAGAGGAAGAAATTATTAAAGAAAACCCTCATTTCTACTTGTAATCTCAATTTTGCCATTAAATTTTGATGGAAATTACAAGATTAGCCCTGATGTCATTTTTGTGTTTGGTATTTTTGTGTTCACTTATCATTGCTCATAAATTTTACTATGTTTTGTGTTAATTCATAAAAAAAATTAAAATATATATGCCTAAATTTAGAGGAAGTGTAAATTAGATGAGATCATCATATTACGTTAAGAGCGAGTCTCTAACATCTAACACTCAAACTGTTGTTATTACCAACGTAACACGTCTTCTAATTACACCGTTAAGAACACTTTTAATACAAGTATCCACTCTCGCTCTCCATCAAGAAGCCGCACCACCAGGCTTATGATATCACTGGTCAGAGAGTTCGGAGAGCGTTCAAACAACGAGTTAATGATTTAGGATCACTATGAGATCGTATACCACATATGATCAGGCTTATGGAAGACTAAAATACTTCGGATCGTTACATCAAACTAAGCATTCACACAAGCGAGTTGAAAACCACGTCTTCATCTAAAATTTTAAGGCAATAGGGATATCTAAGTCTAAAATTTTAAGGAAATAAAGATATGAGTCCGCTGACCATGTCTTAATCAATATATATTCTTTAATCGAATTTGAAACTTCCCACTCACACATGATTAACTACATCAACTTAGATTTTCTTAGGTTCAATTTAGAGAATAATTTTGTAGTTGAGATTGAGTTAGATTTCTAGTTTTTTTTAGATATAAAGTAATCATATGGATTGGATATATAATTGTCGGCAACCCTTGTTTGGTTGACTTGAATGTCTCCACATGTTTTTTTTTTTTTTTGAAGGAATCTCCACATGTTTGATTTCTCAATTTTCATGTTAATTTAATAAATTTGTGATTATATTAATAGAGGGAGGAAGCTGACGTGGATGAGAAAAAAAGAGAAAATAGAAAATCATCAGTGTCCACTAAAAGGAGTAGAGCTGCAGCAATACACAACCAATCTGAAAGGGTAAGTGAGCACATAGAATGTACTTTAATTTATATAATATTTTAATAACTATAAAATCAAGGATTAGTTGTTGATTGGTTCATTCTTTTATTGGAATTTCAGAAAAGGAGGGATAAGATAAACCAGAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGGTATTAGAGAATATATATAAAGTTAATTTAATTAATTGGTTTCAACTATATAGCTATTGGAATTTTGAAAAGCCAACAATGATTGTTTATATGTGGTATATGAGCCAATTATTAGGTATCTAATGGTCCCAAATTCTTATCAGTTTTTTTTCAACGATGCTATAAATTAAACAGTTGCTATGGTGTAACGTTATTTTTTTAGCTCAATCACTTTCCAAGACTTCAAGTATAGGTCCCCTGATGATTCTGCACTATAAATCTGATAAGGTCACGTTATAATTTTGTTTCTTCTTCTTGGGATCTTGCCTTGTAAAAATTCTTTAGGATTTATTTTTTAAAAAAATTTCATGTAAACAACACTGTTTTCTTTTTTTAACAAATATTAGGAATATTAAACAATTTTTTTAAGTATTTTATTAAAACATGATAAAGGTACTCCATCCCGATACATCTAGGCATGACAATGAGGTGGGGTGGGGACGGGTTTTATTTCTCGTCCCCATACCTGATTCTCATATATTTACCCGTTACCCTACCCATACCCGACATATATGAGAAATTGAACCTCATTCCCGTCCCCGACGGGTTCGGGTATCCCCGTCCCCACATTGAATTATTTTATTAATAAAAAAAATAGAAGTTTTTTTTGCAACCCTTAGAGAAATGTCGTAATGCATTATCCAACAATATGCTTACTTTAACTTTTGTTGGACTGATTGATTTAGTTGCTTCTTTAAATATCAATGGTCATTTTTATAACACGGCAATTATCAAACAAAATAACATGACATATCAACATAAAGTAATTTTATGCATTCAGGACGGATTTGGGTATGAGTTCGGGGTGGGTACATATATACCCGTTACCCGTCCCATACCTGTGTTTTGAAATCGGAAAAACCCTAAACCCATACCCAAACTCAGTCAAAACGGGGAAAATCCGTCAAATTGAGTTTGGTTCGGGCGCGTAACACAAAGGGTATGAGTTTTGTTGTCATGCCTAGTTACATCCATCTACATTTTATAACTATACAAGGAAGTGATGTGTTATGTATGTTTCTTCTTTTAGAAAAAGTTTTTTGGAATGACATTTTTTTTATAAAGTTTTTTAGATTGACTTATTTTTGAGTTTATAAAAAAAATTTATACAAATAAATAAGTTTTATATTAATTCATAAAGTTTCATTAAAAAAATTATATCATTTTGACGAAATTTGTATCTTTATAAGCTGTTTTTTTCATAAACTACCTTGACAAGTTTATGAATAATACGTAAAAACTTATTTATTTGTATAATTTTTTGCATAAGTTTAAAAATAAGTCAATCCAAACAGGCTCATGCTTTTCTTTGATTTATGATTGGTGTTGAGGCTATATTTTTGTTATTTTAGTGTTTGTATTCCTCCTCTTTGCCATATCTTATGCCTTTATTATTGGATTTGATATTTCCTTTTCTTCATAACAATACCTTTTTTTTTACGAATATAAATTATATACCTTGATAAGGCAACAATTTTAACAATGAACTACCTCTTATTTAATTTTTTATTTACATTCATTTGAGTGTTTTTAAATAAGGGTTTTGTTACAAGCCACCCTTTGGTGGTGTCTTTTAACAAGTCACACCTTAAGGTGTGATTTTCACTTTTTAGTTATAACTTTGCTAAAAGACACCTTCATAAAAGTAAGTTGGTGTCTTTTCGCAAATGCTCATAGAGTAACTTGATAAAAGACACCTTCATAAAAGGTGTCTTCTATCATAACCCTTTAAATAATTCACATAATGCTTTCAACTTGAGTTTCAATTTGAATTTTCAATCTTTATTATTTTTTTAAATATATCTTTTCGTACTTTAATTCAATGCACGCATGATTAAAGTTTGTCCACTTGGACCACTTTAAACTTGGATCTTCTATACATTTTACTTGACTTGGTCCATGTTATATTTGAACATCAAACAAATTTCTTATGCATTGTAGTATACCTTTGTCCGTGCCGTACTTGTTCAAAGATGAGTATAGACATATACAAAAAGTATTTTTTTTGAAAGAATATACAAAAAGTATTACATAGTTTGTATATCCAATTAACTATTTTTGTACAAGTATATATGTCTGATTAACTTTTATTGAGTCATAATAAAATGTAATAAAAATTTACAAAAAATATTAATGATGAAACCATTTTAATATATAGTTAATTTTAATAATTTTACATAAAAATATTGGGTGTGTCTAATATGAACCTTTTTAAAAAGTTCAAAGATGAACCTTTGTCATTTTAATAATAGAATATAAATTTTATAATAATAAAAAACGAGAAGGGATTTAATATTTTACTAAAAAAATAGGGTTTATCATTATATAGTTTTTTTTTTGAAGGAATCTTTATATAGTTTTGGGAGGTCTATTTTAAACAAATCATATTATCCATATAATTAAAGATAAAGATTCTGAACGATGTGATTAATTGAACGGTCATGAGCTTTTTCCAATCATATATGGCTATGTATGCATTGTTTTCATCCATCTTTGTCCACACAAAATCAATCTCACTACTTGTTGTGACACTTTGACATGGTTGGCTATTTGGTGAGGAAACACCCAACTGCTCCCATAGAAACCCTTTCCAGCAGTAGGGCCTAATGCTCTTTAATGACATAAACATCTAGACAATTAACGTTTTGGCCACACCCTAAATAGAGGGGACAGAAAAATAGTTAAGAAGAAAAACCCATAGTCTTTTTTGTGGTGTCCGGGGTTCGAACCTCATACATTGCATATATTATGCATTGTCCTGATCAACTGAGTTAAACTCACGAGGACAAAAAAAATAAAATCCATAGTCTGTATAAACAAAAAAAATTCAAAATAGTATGTAAAAAATAAATATATATATTCAAAAGAAAAATATGTTAATTGCTTATTCATGAATATATGGACTTTTCTCTCAAAAAAAAATGAATATATGGACTTGATTTAAGTTTTCTTTTCTATAATTTACTTGATTTAAATGTTGTTACAGACCGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAACAATTGCAAGCACAAGTGAATATGGTGAATAGATTCAACATGTCATCCATGATGATGCCGATGACAATGCAACAACAACTTCAAATGTCGATGATGAATCCAATGGGCATGGGAATGGGGCCAATGGGAATGGCCGGAATGGGGATGGGTATGGGAATGGGCATGGGAATGGATATGAACACCATGAATCGCGTTAACATCCCTGGGATGCCTCCGGTTCTCCACCCATCTGCATTCATGCCTATGCCTTCGTGGGATGCCGGTGGTGGTGACCGACTTCAAGGACCTCCAGCAGCCGGGATGGCTGACCCCCTCTCCACATTTTTTGGTTGCCAATCACAGGTAAATAAACATCATTTTATATAATCTTACTTATCAATTTAAAAAAATAGAAAATAAAAAATTATTATTAATTAAAGTAGCATTAATCTCAACAACAATATTGTGGACTATATCACGCCATGTAGTCACAAAAATATTCAGAACATTCGACGTGGTCCACAATTTAAAGCTATGATTGGGTGTGAGAAAAATTCAACTTTCTTATGATGGAAAGCAAACAGCTGGTTTTTGATGAACTGGCTAGGTCCTGAAATTTAGAGACACTATAGATAAGGGTGTGTAGTAGTAGACAGTCAAATCAAATTCATCGTGTGATAATTATTGTCTTTCAGTTTATTGAGATAGTGACAATGTTCTGTTCGAATAGTACTTTGAAATGTCAATAAGCACTTATATCCAAAAGAAAATAATTAATAAACACAAACTGGTTTGTGTAAGTGATAAGGGTGTAGGACATATGAACATAAATTTCAATTTTGACTCTTATGAATTGAAAAAAAATATATATTTATAGTTAGAGGTGAAAATCCACCTTCTATGCTCAATAAAAATCACCATAAAAATTAACACTTAGTTAAAAATAATTGACTAATTTGACAAAAAAAAAAAAAGATAATACACTTGTTTGAAATTCTAAATTAAAGGACTTCTAGTGCAATTTTATCTATTACTCATTATCTCTCAACTTTTGTTCCTCCTATTAATTACATGCATCATAAGTTCAAAAATCACATGCATCATAAAATGTCTATTACACAGGTGAATTTTATTTGGGTATGATTTGTTTTACTTGATATGTAAAAAACAAACATTGATCAATATATATAACGTTATAATTGATAAAAATAATTAATTTTGTGCAGCCCATGACCATGGATGCTTATAGTAGGATTGCAGCCATGTATCAGCAGATGCAACAACAACCTCCAGCACCAG

Protein sequence

>MS.gene36203.t1

MHGLGLPKVPHKHPSTAGTTPSKETWEKPRGSGTLESIVNQATSFPHRGKSPFLAGGGVYGNMLVPWLDPQRAAAIAAATAANNGMTVDALVPCSNTTKEQRIHAMDPVPRSGIGSCMVGGHTPVGSCSAVVAATQDEGGVLAASAAKRGRVAHVAGSGRDQSMSGSATFGRQSQQVTLDTYDREFGMTGFTSTSIASMDNTSSEKQCTRTTTVDDHDSVCHSRPPREEADVDEKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVNMVNRFNMSSMMMPMTMQQQLQMSMMNPMGMGMGPMGMAGMGMGMGMGMGMDMNTMNRVNIPGMPPVLHPSAFMPMPSWDAGGGDRLQGPPAAGMADPLSTFFGCQSQPMTMDAYSRIAAMYQQMQQQPPAP