AlfalfaGEDB | MS.gene56593

M. sativa cultivar XinJiangDaYe / MS.gene56593

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF08387.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56593.t1	XP_013464451.1	90	451	45	0	1	451	1	451	4.20E-228	800.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56593.t1	Q9LUC4	29.5	448	269	11	13	445	26	441	2.1e-34	148.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56593.t1	A0A072VA50	90.0	451	45	0	1	451	1	451	3.0e-228	800.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049356	MS.gene56593	0.801786	7.64E-49	-1.69E-46
MS.gene049491	MS.gene56593	0.803296	3.73E-49	-1.69E-46
MS.gene050301	MS.gene56593	0.808168	3.54E-50	-1.69E-46
MS.gene050971	MS.gene56593	0.803712	3.06E-49	-1.69E-46
MS.gene051360	MS.gene56593	0.831202	1.91E-55	-1.69E-46
MS.gene051860	MS.gene56593	0.805357	1.39E-49	-1.69E-46
MS.gene052188	MS.gene56593	0.847499	1.11E-59	-1.69E-46
MS.gene052253	MS.gene56593	0.823133	1.63E-53	-1.69E-46
MS.gene052310	MS.gene56593	0.806475	8.08E-50	-1.69E-46
MS.gene052340	MS.gene56593	0.846665	1.88E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene032296	MS.gene56593	PPI
MS.gene038427	MS.gene56593	PPI
MS.gene043123	MS.gene56593	PPI
MS.gene053311	MS.gene56593	PPI
MS.gene053312	MS.gene56593	PPI
MS.gene053313	MS.gene56593	PPI
MS.gene055877	MS.gene56593	PPI
MS.gene055880	MS.gene56593	PPI
MS.gene055882	MS.gene56593	PPI
MS.gene055883	MS.gene56593	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56593.t1	MTR_2g072530	90.022	451	45	0	1	451	1	451	0.0	828
MS.gene56593.t1	MTR_2g072550	50.000	268	62	6	184	451	31	226	2.93e-65	209
MS.gene56593.t1	MTR_7g094030	33.407	452	268	13	12	446	27	462	6.32e-63	211
MS.gene56593.t1	MTR_2g082880	33.816	414	249	11	7	411	4	401	8.44e-63	209
MS.gene56593.t1	MTR_2g082800	37.028	397	236	10	3	398	17	400	6.21e-60	201
MS.gene56593.t1	MTR_2g072720	33.547	468	270	15	2	446	28	477	2.26e-58	199
MS.gene56593.t1	MTR_2g072730	33.182	440	274	12	10	436	13	445	1.50e-53	186
MS.gene56593.t1	MTR_1g115250	30.296	439	271	11	2	431	21	433	2.26e-52	182
MS.gene56593.t1	MTR_2g082850	36.056	355	196	11	12	348	21	362	3.21e-52	180
MS.gene56593.t1	MTR_4g032845	31.667	420	255	15	12	412	2	408	9.66e-47	167

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene56593.t1	AT3G14710	29.054	444	276	10	13	445	26	441	2.95e-39	147
MS.gene56593.t1	AT4G26340	26.265	415	265	11	13	413	2	389	5.38e-23	101
MS.gene56593.t1	AT4G10400	23.775	408	271	10	13	411	2	378	5.14e-20	92.0
MS.gene56593.t1	AT4G10400	23.775	408	271	10	13	411	2	378	5.14e-20	92.0
MS.gene56593.t1	AT4G10400	23.775	408	271	10	13	411	2	378	5.14e-20	92.0
MS.gene56593.t1	AT5G22730	26.350	463	287	19	10	443	26	463	6.85e-20	92.4
MS.gene56593.t1	AT5G22730	26.350	463	287	19	10	443	26	463	6.85e-20	92.4
MS.gene56593.t1	AT3G03030	25.404	433	282	15	13	411	2	427	4.24e-19	90.1
MS.gene56593.t1	AT5G56560	24.494	445	288	14	15	445	7	417	1.61e-18	87.8
MS.gene56593.t1	AT3G03030	26.984	315	200	11	13	303	2	310	4.44e-18	85.5

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Find 54 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAGCGTTAAGAAT+AGG	0.388896	2.1:+26129433	None:intergenic
AAACAAGAGCGTTAAGAATA+GGG	0.343651	2.1:+26129434	None:intergenic
AAACTAATGTTCTGTGTTGT+TGG	0.384561	2.1:+26129974	None:intergenic
AACAAGAGCGTTAAGAATAG+GGG	0.584218	2.1:+26129435	None:intergenic
AACAGAAGCATTACGAATTG+AGG	0.535694	2.1:+26129799	None:intergenic
AACTTATCTGCAACTAAATG+AGG	0.518407	2.1:-26129494	MS.gene56593:CDS
AAGCTTGACTGAAAGCAGTG+AGG	0.715060	2.1:+26128950	None:intergenic
ACATGAAAGCATTCTTAGTC+AGG	0.433079	2.1:-26130530	MS.gene56593:CDS
AGATGTCTTTACTTCTGCAA+CGG	0.610724	2.1:-26128975	MS.gene56593:CDS
AGGTAGTCATGGATTCACCA+AGG	0.701421	2.1:-26130591	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTAATGTTCTGTGTTGT+TGG	+	chr2.1:26129339-26129358	None:intergenic	30.0%
AACTTATCTGCAACTAAATG+AGG	-	chr2.1:26129816-26129835	MS.gene56593:CDS	30.0%
ATGCATCTAAGTTAAGTGAA+TGG	-	chr2.1:26129034-26129053	MS.gene56593:intron	30.0%
ATTGCAGCTTAAAAGTGAAT+CGG	+	chr2.1:26129130-26129149	None:intergenic	30.0%
CTTCAAAAACTTAGCATTTC+TGG	-	chr2.1:26129219-26129238	MS.gene56593:intron	30.0%
GAGTCTATGAAAACAACTTA+AGG	+	chr2.1:26130094-26130113	None:intergenic	30.0%
TCAAAAACTTAGCATTTCTG+GGG	-	chr2.1:26129221-26129240	MS.gene56593:intron	30.0%
TGAAGATAAAAAGGACAGAA+TGG	-	chr2.1:26129548-26129567	MS.gene56593:CDS	30.0%
TTGCAATTGTTAGACAACTT+TGG	+	chr2.1:26130555-26130574	None:intergenic	30.0%
TTGTTTGGTAAAATTCGTGT+TGG	-	chr2.1:26130428-26130447	MS.gene56593:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	26128727	26130605	26128727	ID=MS.gene56593
chr2.1	mRNA	26128727	26130605	26128727	ID=MS.gene56593.t1;Parent=MS.gene56593
chr2.1	exon	26129685	26130605	26129685	ID=MS.gene56593.t1.exon1;Parent=MS.gene56593.t1
chr2.1	CDS	26129685	26130605	26129685	ID=cds.MS.gene56593.t1;Parent=MS.gene56593.t1
chr2.1	exon	26129426	26129569	26129426	ID=MS.gene56593.t1.exon2;Parent=MS.gene56593.t1
chr2.1	CDS	26129426	26129569	26129426	ID=cds.MS.gene56593.t1;Parent=MS.gene56593.t1
chr2.1	exon	26128727	26129017	26128727	ID=MS.gene56593.t1.exon3;Parent=MS.gene56593.t1
chr2.1	CDS	26128727	26129017	26128727	ID=cds.MS.gene56593.t1;Parent=MS.gene56593.t1

Gene Sequence

>MS.gene56593

ATGGATTCACCAAGGGAAACAACAGTAGGAGAAAGAGATTTGATTAGCAAATTACATGAAAGCATTCTTAGTCAGGTCCTGTCATTCATTCCAATCGTAGACGCGGTTGGCACTAGCGTCTTATCAAGAAGATGGATTGATGTTTGGAAATGCATAACAAATCTAGATTTTGATGATAGTTTGCTCGGTTCTAAGAAGAAAAAGATGCAAAAGGAACAATTTGTGAAATTTGTTGAAAAAGTGCTTCTTCAATTCACTAACTCAAGCATCCTAAGCTTCTCCCTTTGCTTAACTAGTCATGAATATGATGCATCTAAGTTAAGTGAATGGATTTGCTTTATCTTAGAAAGGAGAGTTCAAAAACTTCGTGTTCAATATGCCGATAAAGTTTTCCTTCCTTCCGATTCACTTTTAAGCTGCAATTCTTTAGTCGAATTGACGCTTCAAATGAGATGTACTCTTAGTCTTCCCGTATCTGTTTGTCTCCAAAACCTTCAAAAACTTAGCATTTCTGGGGTTAAATTAGTGAGTGATTCGTCCACTTGTTCAAAAGATATAACTCTCAATTTCCCGATTCTCAAAGTGTTTGAAGCTAGAGGGTGCGAATGGCCAACAACACAGAACATTAGTTTACAAGTACCTTTACTTGAGACGTTTTCGATAGCAATATGGAACCATCATTCAAATGAATCATGTAAATATGCCATTAAGGTTCATAGTCGACGCCTAACAGATTTCTCTTGCGAGGGTGATCTTGAACAAGACATCGTTCTATGTGATTCGTCCTCAATTCGTAATGCTTCTGTTGTGATTGTTGTTGATGAAGATAAAAAGGACAGAATGGAAAAACTTGGATTTCAAGTACGTAATCTTCTCAAACAAATTGATAACGTGGAACAGCTAAAGTTATTGTTTTACAAGGTATGTTTTTTCTTTTACGATACATGAACGGAAATAGTTTTGTATGACAAAAACATGTTGTGATAATTGAAAAAAAAAATCGCAGAATTTTAATAAATTTTTCCTTGTCCTACAGGTTTTAAGGCATGGGAAAGATATTTTCACCAATCTGCCTGTCTTTGGAAGGTTAACTTATCTGCAACTAAATGAGGTCACTGGTGAAGCTTTGTTGCAATTACTCCACAATTCCCCTATTCTTAACGCTCTTGTTTTACTTAATGTAAGTTTAGGTACCCTAGCCTTTTGTTCAAAAAAAATTTAATGTCTTGTTAATGTGTTTAGTGTTGTTTAGATTGACATATTTGAGCTTATCTACTAGTATAAACACTTGTCAGACCTTCTTCAAAAAAATAAACACTTGTAAGACTTTTTGAGAGAGCTTATAGAAACAACTTATGACATGTCCTTAAGTTGTTTTCATAGACTCTCGAGGATAGTTTATGAAAACAAGTTATAGCTTATATGAAATCAGTTGGACTTAATTTATCTTTTATTATAAAAATTCTTTATACATAAGCAGTTATGTTATAAGCGCTTAATTAAGTTGTTTATCCAGAAAGGGTCTTTGTTACATATATCATAAACTAATTTAAATGATAGAAAAACTCATGACACAAAAAATTTTCAGGGAGTAGCTGATTTAGACAAAGATGTCTTTACTTCTGCAACGGTGCCTCACTGCTTTCAGTCAAGCTTCAAAGTATTTCAGTTTAAAGGATTTAATGCGAACGAGCACGACCTTTGTTTGGTAAAATTCGTGTTGGCAGATGCAGCAATCATGGAGATGATGATGATATCGCCGGCTTTTTGGCTGCGATATGCAAATGTTGATTTGAAAAAAGTTAAGGAGAAGGTACTCTCATTACCAAAGTTGTCTAACAATTGCAAGATAGAATTTTCTGATATCAGTAGTTCCTGA

Protein sequence

>MS.gene56593.t1

MDSPRETTVGERDLISKLHESILSQVLSFIPIVDAVGTSVLSRRWIDVWKCITNLDFDDSLLGSKKKKMQKEQFVKFVEKVLLQFTNSSILSFSLCLTSHEYDASKLSEWICFILERRVQKLRVQYADKVFLPSDSLLSCNSLVELTLQMRCTLSLPVSVCLQNLQKLSISGVKLVSDSSTCSKDITLNFPILKVFEARGCEWPTTQNISLQVPLLETFSIAIWNHHSNESCKYAIKVHSRRLTDFSCEGDLEQDIVLCDSSSIRNASVVIVVDEDKKDRMEKLGFQVRNLLKQIDNVEQLKLLFYKVLRHGKDIFTNLPVFGRLTYLQLNEVTGEALLQLLHNSPILNALVLLNGVADLDKDVFTSATVPHCFQSSFKVFQFKGFNANEHDLCLVKFVLADAAIMEMMMISPAFWLRYANVDLKKVKEKVLSLPKLSNNCKIEFSDISSS