Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83460.t1 | XP_003612548.1 | 93.3 | 135 | 8 | 1 | 1 | 134 | 1 | 135 | 3.10E-62 | 247.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83460.t1 | G7K5F6 | 93.3 | 135 | 8 | 1 | 1 | 134 | 1 | 135 | 2.2e-62 | 247.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene83460 | 0.839705 | 1.35E-57 | -1.69E-46 |
MS.gene049171 | MS.gene83460 | 0.858087 | 1.05E-62 | -1.69E-46 |
MS.gene049173 | MS.gene83460 | 0.807304 | 5.40E-50 | -1.69E-46 |
MS.gene049217 | MS.gene83460 | 0.872594 | 2.82E-67 | -1.69E-46 |
MS.gene049222 | MS.gene83460 | 0.88026 | 6.35E-70 | -1.69E-46 |
MS.gene049232 | MS.gene83460 | 0.857013 | 2.18E-62 | -1.69E-46 |
MS.gene049285 | MS.gene83460 | 0.894766 | 1.81E-75 | -1.69E-46 |
MS.gene049320 | MS.gene83460 | 0.885311 | 9.07E-72 | -1.69E-46 |
MS.gene049609 | MS.gene83460 | 0.877369 | 6.64E-69 | -1.69E-46 |
MS.gene049615 | MS.gene83460 | 0.820642 | 6.16E-53 | -1.69E-46 |
MS.gene049627 | MS.gene83460 | 0.820293 | 7.41E-53 | -1.69E-46 |
MS.gene049805 | MS.gene83460 | 0.86984 | 2.29E-66 | -1.69E-46 |
MS.gene05010 | MS.gene83460 | 0.855234 | 7.24E-62 | -1.69E-46 |
MS.gene050163 | MS.gene83460 | 0.8533 | 2.62E-61 | -1.69E-46 |
MS.gene050165 | MS.gene83460 | 0.829461 | 5.08E-55 | -1.69E-46 |
MS.gene050170 | MS.gene83460 | 0.808326 | 3.27E-50 | -1.69E-46 |
MS.gene050323 | MS.gene83460 | 0.822737 | 2.02E-53 | -1.69E-46 |
MS.gene050325 | MS.gene83460 | -0.817747 | 2.81E-52 | -1.69E-46 |
MS.gene050327 | MS.gene83460 | -0.818609 | 1.79E-52 | -1.69E-46 |
MS.gene050333 | MS.gene83460 | 0.83378 | 4.38E-56 | -1.69E-46 |
MS.gene050380 | MS.gene83460 | -0.807474 | 4.97E-50 | -1.69E-46 |
MS.gene050381 | MS.gene83460 | -0.821956 | 3.06E-53 | -1.69E-46 |
MS.gene050496 | MS.gene83460 | 0.816925 | 4.30E-52 | -1.69E-46 |
MS.gene050504 | MS.gene83460 | 0.871003 | 9.51E-67 | -1.69E-46 |
MS.gene050518 | MS.gene83460 | 0.850985 | 1.19E-60 | -1.69E-46 |
MS.gene050538 | MS.gene83460 | 0.830306 | 3.16E-55 | -1.69E-46 |
MS.gene050577 | MS.gene83460 | 0.852649 | 4.02E-61 | -1.69E-46 |
MS.gene050593 | MS.gene83460 | 0.858391 | 8.51E-63 | -1.69E-46 |
MS.gene050612 | MS.gene83460 | 0.836091 | 1.15E-56 | -1.69E-46 |
MS.gene050662 | MS.gene83460 | 0.802236 | 6.18E-49 | -1.69E-46 |
MS.gene050675 | MS.gene83460 | 0.838302 | 3.12E-57 | -1.69E-46 |
MS.gene050686 | MS.gene83460 | 0.830185 | 3.39E-55 | -1.69E-46 |
MS.gene050699 | MS.gene83460 | 0.876833 | 1.02E-68 | -1.69E-46 |
MS.gene050747 | MS.gene83460 | 0.882218 | 1.25E-70 | -1.69E-46 |
MS.gene050772 | MS.gene83460 | 0.900366 | 7.87E-78 | -1.69E-46 |
MS.gene050800 | MS.gene83460 | -0.806621 | 7.53E-50 | -1.69E-46 |
MS.gene05080 | MS.gene83460 | 0.808327 | 3.27E-50 | -1.69E-46 |
MS.gene050868 | MS.gene83460 | 0.825951 | 3.54E-54 | -1.69E-46 |
MS.gene050871 | MS.gene83460 | 0.825391 | 4.81E-54 | -1.69E-46 |
MS.gene050883 | MS.gene83460 | -0.807546 | 4.80E-50 | -1.69E-46 |
MS.gene050950 | MS.gene83460 | 0.87296 | 2.13E-67 | -1.69E-46 |
MS.gene050986 | MS.gene83460 | 0.843855 | 1.08E-58 | -1.69E-46 |
MS.gene05100 | MS.gene83460 | 0.861789 | 8.02E-64 | -1.69E-46 |
MS.gene05105 | MS.gene83460 | 0.807396 | 5.16E-50 | -1.69E-46 |
MS.gene051167 | MS.gene83460 | -0.815851 | 7.48E-52 | -1.69E-46 |
MS.gene051336 | MS.gene83460 | 0.806933 | 6.46E-50 | -1.69E-46 |
MS.gene051387 | MS.gene83460 | 0.837551 | 4.86E-57 | -1.69E-46 |
MS.gene051551 | MS.gene83460 | 0.869733 | 2.48E-66 | -1.69E-46 |
MS.gene051666 | MS.gene83460 | 0.84367 | 1.21E-58 | -1.69E-46 |
MS.gene051692 | MS.gene83460 | 0.825121 | 5.57E-54 | -1.69E-46 |
MS.gene051694 | MS.gene83460 | 0.872591 | 2.83E-67 | -1.69E-46 |
MS.gene051810 | MS.gene83460 | 0.824067 | 9.87E-54 | -1.69E-46 |
MS.gene051858 | MS.gene83460 | 0.86155 | 9.48E-64 | -1.69E-46 |
MS.gene052164 | MS.gene83460 | 0.849102 | 4.01E-60 | -1.69E-46 |
MS.gene052271 | MS.gene83460 | 0.855405 | 6.45E-62 | -1.69E-46 |
MS.gene052379 | MS.gene83460 | 0.807686 | 4.48E-50 | -1.69E-46 |
MS.gene052421 | MS.gene83460 | 0.835331 | 1.79E-56 | -1.69E-46 |
MS.gene052482 | MS.gene83460 | 0.843044 | 1.79E-58 | -1.69E-46 |
MS.gene052486 | MS.gene83460 | 0.851616 | 7.90E-61 | -1.69E-46 |
MS.gene052501 | MS.gene83460 | 0.845406 | 4.14E-59 | -1.69E-46 |
MS.gene052503 | MS.gene83460 | 0.889815 | 1.73E-73 | -1.69E-46 |
MS.gene052505 | MS.gene83460 | 0.835688 | 1.45E-56 | -1.69E-46 |
MS.gene052506 | MS.gene83460 | 0.84316 | 1.66E-58 | -1.69E-46 |
MS.gene052615 | MS.gene83460 | 0.883174 | 5.61E-71 | -1.69E-46 |
MS.gene052822 | MS.gene83460 | 0.844477 | 7.38E-59 | -1.69E-46 |
MS.gene052823 | MS.gene83460 | 0.886017 | 4.93E-72 | -1.69E-46 |
MS.gene052825 | MS.gene83460 | 0.875983 | 2.00E-68 | -1.69E-46 |
MS.gene052916 | MS.gene83460 | 0.85135 | 9.40E-61 | -1.69E-46 |
MS.gene052966 | MS.gene83460 | 0.810459 | 1.14E-50 | -1.69E-46 |
MS.gene052982 | MS.gene83460 | 0.812081 | 5.07E-51 | -1.69E-46 |
MS.gene053018 | MS.gene83460 | 0.830679 | 2.56E-55 | -1.69E-46 |
MS.gene053203 | MS.gene83460 | 0.851856 | 6.76E-61 | -1.69E-46 |
MS.gene053207 | MS.gene83460 | 0.839789 | 1.28E-57 | -1.69E-46 |
MS.gene053213 | MS.gene83460 | 0.924437 | 7.06E-90 | -1.69E-46 |
MS.gene053286 | MS.gene83460 | 0.919089 | 6.96E-87 | -1.69E-46 |
MS.gene053322 | MS.gene83460 | 0.837773 | 4.27E-57 | -1.69E-46 |
MS.gene053436 | MS.gene83460 | 0.896858 | 2.46E-76 | -1.69E-46 |
MS.gene053480 | MS.gene83460 | 0.832613 | 8.56E-56 | -1.69E-46 |
MS.gene053574 | MS.gene83460 | 0.901914 | 1.65E-78 | -1.69E-46 |
MS.gene053626 | MS.gene83460 | 0.855838 | 4.82E-62 | -1.69E-46 |
MS.gene053632 | MS.gene83460 | 0.870999 | 9.54E-67 | -1.69E-46 |
MS.gene053813 | MS.gene83460 | 0.814029 | 1.90E-51 | -1.69E-46 |
MS.gene053824 | MS.gene83460 | 0.852766 | 3.72E-61 | -1.69E-46 |
MS.gene053916 | MS.gene83460 | 0.819918 | 9.02E-53 | -1.69E-46 |
MS.gene054003 | MS.gene83460 | 0.848336 | 6.54E-60 | -1.69E-46 |
MS.gene054408 | MS.gene83460 | 0.854783 | 9.78E-62 | -1.69E-46 |
MS.gene054595 | MS.gene83460 | 0.867257 | 1.56E-65 | -1.69E-46 |
MS.gene054600 | MS.gene83460 | 0.851715 | 7.41E-61 | -1.69E-46 |
MS.gene054642 | MS.gene83460 | 0.888361 | 6.32E-73 | -1.69E-46 |
MS.gene054706 | MS.gene83460 | -0.800866 | 1.18E-48 | -1.69E-46 |
MS.gene05470 | MS.gene83460 | 0.819767 | 9.77E-53 | -1.69E-46 |
MS.gene054927 | MS.gene83460 | 0.863831 | 1.88E-64 | -1.69E-46 |
MS.gene054954 | MS.gene83460 | 0.878151 | 3.54E-69 | -1.69E-46 |
MS.gene05505 | MS.gene83460 | 0.864593 | 1.09E-64 | -1.69E-46 |
MS.gene055154 | MS.gene83460 | -0.81779 | 2.75E-52 | -1.69E-46 |
MS.gene055206 | MS.gene83460 | 0.817962 | 2.51E-52 | -1.69E-46 |
MS.gene055212 | MS.gene83460 | 0.829229 | 5.78E-55 | -1.69E-46 |
MS.gene055224 | MS.gene83460 | 0.80915 | 2.18E-50 | -1.69E-46 |
MS.gene055289 | MS.gene83460 | 0.830046 | 3.66E-55 | -1.69E-46 |
MS.gene055362 | MS.gene83460 | 0.888304 | 6.65E-73 | -1.69E-46 |
MS.gene055499 | MS.gene83460 | 0.811152 | 8.07E-51 | -1.69E-46 |
MS.gene055502 | MS.gene83460 | 0.893223 | 7.67E-75 | -1.69E-46 |
MS.gene055577 | MS.gene83460 | 0.860046 | 2.71E-63 | -1.69E-46 |
MS.gene055647 | MS.gene83460 | 0.845113 | 4.97E-59 | -1.69E-46 |
MS.gene055722 | MS.gene83460 | 0.874419 | 6.86E-68 | -1.69E-46 |
MS.gene055750 | MS.gene83460 | 0.802868 | 4.57E-49 | -1.69E-46 |
MS.gene05589 | MS.gene83460 | 0.804534 | 2.06E-49 | -1.69E-46 |
MS.gene055909 | MS.gene83460 | 0.815022 | 1.14E-51 | -1.69E-46 |
MS.gene055911 | MS.gene83460 | 0.814976 | 1.17E-51 | -1.69E-46 |
MS.gene05592 | MS.gene83460 | 0.818836 | 1.59E-52 | -1.69E-46 |
MS.gene055941 | MS.gene83460 | 0.86296 | 3.50E-64 | -1.69E-46 |
MS.gene056040 | MS.gene83460 | 0.815393 | 9.46E-52 | -1.69E-46 |
MS.gene056046 | MS.gene83460 | 0.832566 | 8.78E-56 | -1.69E-46 |
MS.gene056083 | MS.gene83460 | 0.839297 | 1.72E-57 | -1.69E-46 |
MS.gene056166 | MS.gene83460 | 0.825896 | 3.65E-54 | -1.69E-46 |
MS.gene056374 | MS.gene83460 | 0.882233 | 1.24E-70 | -1.69E-46 |
MS.gene056409 | MS.gene83460 | 0.830015 | 3.73E-55 | -1.69E-46 |
MS.gene056446 | MS.gene83460 | 0.805647 | 1.21E-49 | -1.69E-46 |
MS.gene056448 | MS.gene83460 | 0.843752 | 1.15E-58 | -1.69E-46 |
MS.gene056504 | MS.gene83460 | 0.859932 | 2.94E-63 | -1.69E-46 |
MS.gene056510 | MS.gene83460 | 0.85043 | 1.71E-60 | -1.69E-46 |
MS.gene056549 | MS.gene83460 | 0.804739 | 1.87E-49 | -1.69E-46 |
MS.gene056610 | MS.gene83460 | 0.837708 | 4.43E-57 | -1.69E-46 |
MS.gene056657 | MS.gene83460 | 0.901276 | 3.15E-78 | -1.69E-46 |
MS.gene056692 | MS.gene83460 | 0.830535 | 2.78E-55 | -1.69E-46 |
MS.gene056878 | MS.gene83460 | 0.823042 | 1.71E-53 | -1.69E-46 |
MS.gene056942 | MS.gene83460 | 0.818757 | 1.66E-52 | -1.69E-46 |
MS.gene056946 | MS.gene83460 | 0.828874 | 7.05E-55 | -1.69E-46 |
MS.gene057011 | MS.gene83460 | 0.800807 | 1.21E-48 | -1.69E-46 |
MS.gene057048 | MS.gene83460 | 0.809035 | 2.31E-50 | -1.69E-46 |
MS.gene057076 | MS.gene83460 | 0.845868 | 3.11E-59 | -1.69E-46 |
MS.gene057086 | MS.gene83460 | 0.807017 | 6.21E-50 | -1.69E-46 |
MS.gene057129 | MS.gene83460 | 0.826326 | 2.88E-54 | -1.69E-46 |
MS.gene057146 | MS.gene83460 | 0.831955 | 1.24E-55 | -1.69E-46 |
MS.gene057331 | MS.gene83460 | 0.822913 | 1.84E-53 | -1.69E-46 |
MS.gene057416 | MS.gene83460 | 0.891633 | 3.32E-74 | -1.69E-46 |
MS.gene057658 | MS.gene83460 | 0.81925 | 1.28E-52 | -1.69E-46 |
MS.gene057734 | MS.gene83460 | 0.812927 | 3.31E-51 | -1.69E-46 |
MS.gene057831 | MS.gene83460 | 0.839269 | 1.75E-57 | -1.69E-46 |
MS.gene057856 | MS.gene83460 | 0.812169 | 4.85E-51 | -1.69E-46 |
MS.gene05787 | MS.gene83460 | 0.821819 | 3.30E-53 | -1.69E-46 |
MS.gene057926 | MS.gene83460 | 0.819311 | 1.24E-52 | -1.69E-46 |
MS.gene058019 | MS.gene83460 | 0.865417 | 6.00E-65 | -1.69E-46 |
MS.gene058130 | MS.gene83460 | 0.827229 | 1.76E-54 | -1.69E-46 |
MS.gene058157 | MS.gene83460 | 0.811104 | 8.27E-51 | -1.69E-46 |
MS.gene058183 | MS.gene83460 | 0.821888 | 3.18E-53 | -1.69E-46 |
MS.gene058323 | MS.gene83460 | 0.82442 | 8.15E-54 | -1.69E-46 |
MS.gene058338 | MS.gene83460 | 0.819662 | 1.03E-52 | -1.69E-46 |
MS.gene05837 | MS.gene83460 | 0.856484 | 3.12E-62 | -1.69E-46 |
MS.gene058419 | MS.gene83460 | 0.900741 | 5.41E-78 | -1.69E-46 |
MS.gene058544 | MS.gene83460 | 0.863927 | 1.75E-64 | -1.69E-46 |
MS.gene058723 | MS.gene83460 | 0.803511 | 3.37E-49 | -1.69E-46 |
MS.gene058773 | MS.gene83460 | 0.83507 | 2.08E-56 | -1.69E-46 |
MS.gene058838 | MS.gene83460 | 0.839599 | 1.44E-57 | -1.69E-46 |
MS.gene05883 | MS.gene83460 | 0.844215 | 8.68E-59 | -1.69E-46 |
MS.gene059022 | MS.gene83460 | 0.874801 | 5.09E-68 | -1.69E-46 |
MS.gene059023 | MS.gene83460 | 0.860273 | 2.32E-63 | -1.69E-46 |
MS.gene059029 | MS.gene83460 | 0.806455 | 8.16E-50 | -1.69E-46 |
MS.gene059034 | MS.gene83460 | 0.81972 | 1.00E-52 | -1.69E-46 |
MS.gene05913 | MS.gene83460 | 0.823005 | 1.75E-53 | -1.69E-46 |
MS.gene05934 | MS.gene83460 | 0.836978 | 6.81E-57 | -1.69E-46 |
MS.gene059367 | MS.gene83460 | 0.846916 | 1.61E-59 | -1.69E-46 |
MS.gene059368 | MS.gene83460 | 0.828149 | 1.06E-54 | -1.69E-46 |
MS.gene059536 | MS.gene83460 | 0.855348 | 6.70E-62 | -1.69E-46 |
MS.gene059677 | MS.gene83460 | 0.874765 | 5.23E-68 | -1.69E-46 |
MS.gene059718 | MS.gene83460 | 0.891808 | 2.83E-74 | -1.69E-46 |
MS.gene059756 | MS.gene83460 | 0.850325 | 1.83E-60 | -1.69E-46 |
MS.gene059801 | MS.gene83460 | 0.852539 | 4.32E-61 | -1.69E-46 |
MS.gene059865 | MS.gene83460 | 0.845382 | 4.20E-59 | -1.69E-46 |
MS.gene059902 | MS.gene83460 | 0.859707 | 3.43E-63 | -1.69E-46 |
MS.gene059960 | MS.gene83460 | 0.804316 | 2.29E-49 | -1.69E-46 |
MS.gene060193 | MS.gene83460 | 0.819157 | 1.35E-52 | -1.69E-46 |
MS.gene060482 | MS.gene83460 | 0.901244 | 3.26E-78 | -1.69E-46 |
MS.gene060595 | MS.gene83460 | -0.809179 | 2.15E-50 | -1.69E-46 |
MS.gene060703 | MS.gene83460 | 0.853726 | 1.97E-61 | -1.69E-46 |
MS.gene060762 | MS.gene83460 | 0.827828 | 1.26E-54 | -1.69E-46 |
MS.gene060778 | MS.gene83460 | 0.842132 | 3.12E-58 | -1.69E-46 |
MS.gene06077 | MS.gene83460 | 0.877192 | 7.65E-69 | -1.69E-46 |
MS.gene060804 | MS.gene83460 | 0.839524 | 1.51E-57 | -1.69E-46 |
MS.gene060835 | MS.gene83460 | 0.844651 | 6.63E-59 | -1.69E-46 |
MS.gene060837 | MS.gene83460 | 0.829618 | 4.66E-55 | -1.69E-46 |
MS.gene06092 | MS.gene83460 | 0.86295 | 3.52E-64 | -1.69E-46 |
MS.gene060982 | MS.gene83460 | 0.836235 | 1.05E-56 | -1.69E-46 |
MS.gene061041 | MS.gene83460 | 0.80478 | 1.83E-49 | -1.69E-46 |
MS.gene061134 | MS.gene83460 | 0.812631 | 3.85E-51 | -1.69E-46 |
MS.gene061150 | MS.gene83460 | 0.846615 | 1.94E-59 | -1.69E-46 |
MS.gene061171 | MS.gene83460 | 0.828884 | 7.01E-55 | -1.69E-46 |
MS.gene061200 | MS.gene83460 | 0.858999 | 5.60E-63 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene83460.t1 | MTR_5g026290 | 93.333 | 135 | 8 | 1 | 1 | 134 | 1 | 135 | 2.69e-91 | 260 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 18 sgRNAs with CRISPR-Local
Find 25 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATTTGTACTTTGTTAATT+TGG | 0.112303 | 5.4:+17288174 | None:intergenic |
CTTTGTTAATTTGGAATAAC+TGG | 0.189219 | 5.4:+17288183 | None:intergenic |
TCTTTGAAGTTGCTTTCTTC+AGG | 0.231770 | 5.4:+17288429 | None:intergenic |
ATGCATTGTGCAGCTTCTTA+TGG | 0.341347 | 5.4:-17288528 | MS.gene83460:CDS |
AAGGGATCATCACATGAAAT+AGG | 0.348210 | 5.4:-17288396 | MS.gene83460:CDS |
CTGCACAATGCATTAGTGTT+TGG | 0.388403 | 5.4:+17288538 | None:intergenic |
CTTTGAAGTTGCTTTCTTCA+GGG | 0.422990 | 5.4:+17288430 | None:intergenic |
GCACAAAAGCTTCACAGGTT+GGG | 0.439585 | 5.4:-17288345 | MS.gene83460:CDS |
CTCAAGCACAAAAGCTTCAC+AGG | 0.495602 | 5.4:-17288350 | MS.gene83460:CDS |
GCAGCTTCTTATGGTGAAAG+AGG | 0.521502 | 5.4:-17288519 | MS.gene83460:CDS |
AGCACAAAAGCTTCACAGGT+TGG | 0.529568 | 5.4:-17288346 | MS.gene83460:CDS |
TGCTAGTGAATCAAGGATGA+TGG | 0.543307 | 5.4:-17288244 | MS.gene83460:CDS |
CCATCTCGTCGCAAAAGCTA+TGG | 0.544204 | 5.4:-17288483 | MS.gene83460:CDS |
GAGATGTTGCTAGTGAATCA+AGG | 0.609919 | 5.4:-17288251 | MS.gene83460:CDS |
GCTAGTGAATCAAGGATGAT+GGG | 0.613297 | 5.4:-17288243 | MS.gene83460:CDS |
ATTCACTAGCAACATCTCCA+AGG | 0.613391 | 5.4:+17288256 | None:intergenic |
GATGGGAATTGATGCACCAA+TGG | 0.622941 | 5.4:-17288226 | MS.gene83460:CDS |
CGATGCTATTCTCTACTCGA+CGG | 0.702175 | 5.4:+17288457 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTCTTTACATAGTAATTA+AGG | - | chr5.4:17288457-17288476 | MS.gene83460:CDS | 15.0% |
!! | TTCAAAGAACAAAAAAACAA+GGG | - | chr5.4:17288344-17288363 | MS.gene83460:CDS | 20.0% |
! | ATAACTGGAACAGAAAAATA+TGG | + | chr5.4:17288563-17288582 | None:intergenic | 25.0% |
! | CTTCAAAGAACAAAAAAACA+AGG | - | chr5.4:17288343-17288362 | MS.gene83460:CDS | 25.0% |
!!! | AAGGTTAAAGCATTTTACAA+TGG | - | chr5.4:17288476-17288495 | MS.gene83460:CDS | 25.0% |
AAGGGATCATCACATGAAAT+AGG | - | chr5.4:17288362-17288381 | MS.gene83460:CDS | 35.0% | |
! | GAAAAATATGGTTCTGCCAT+TGG | + | chr5.4:17288551-17288570 | None:intergenic | 35.0% |
! | GCATTTTACAATGGTTTCCT+TGG | - | chr5.4:17288485-17288504 | MS.gene83460:CDS | 35.0% |
!! | CTTTGAAGTTGCTTTCTTCA+GGG | + | chr5.4:17288331-17288350 | None:intergenic | 35.0% |
!! | TCTTTGAAGTTGCTTTCTTC+AGG | + | chr5.4:17288332-17288351 | None:intergenic | 35.0% |
ATGCATTGTGCAGCTTCTTA+TGG | - | chr5.4:17288230-17288249 | MS.gene83460:CDS | 40.0% | |
ATTCACTAGCAACATCTCCA+AGG | + | chr5.4:17288505-17288524 | None:intergenic | 40.0% | |
CTGCACAATGCATTAGTGTT+TGG | + | chr5.4:17288223-17288242 | None:intergenic | 40.0% | |
GAGATGTTGCTAGTGAATCA+AGG | - | chr5.4:17288507-17288526 | MS.gene83460:CDS | 40.0% | |
GCTAGTGAATCAAGGATGAT+GGG | - | chr5.4:17288515-17288534 | MS.gene83460:CDS | 40.0% | |
TGCTAGTGAATCAAGGATGA+TGG | - | chr5.4:17288514-17288533 | MS.gene83460:CDS | 40.0% | |
AGCACAAAAGCTTCACAGGT+TGG | - | chr5.4:17288412-17288431 | MS.gene83460:CDS | 45.0% | |
CGATGCTATTCTCTACTCGA+CGG | + | chr5.4:17288304-17288323 | None:intergenic | 45.0% | |
CTCAAGCACAAAAGCTTCAC+AGG | - | chr5.4:17288408-17288427 | MS.gene83460:CDS | 45.0% | |
GATGGGAATTGATGCACCAA+TGG | - | chr5.4:17288532-17288551 | MS.gene83460:CDS | 45.0% | |
GCACAAAAGCTTCACAGGTT+GGG | - | chr5.4:17288413-17288432 | MS.gene83460:CDS | 45.0% | |
GCAGCTTCTTATGGTGAAAG+AGG | - | chr5.4:17288239-17288258 | MS.gene83460:CDS | 45.0% | |
CCATCTCGTCGCAAAAGCTA+TGG | - | chr5.4:17288275-17288294 | MS.gene83460:CDS | 50.0% | |
! | CCATAGCTTTTGCGACGAGA+TGG | + | chr5.4:17288278-17288297 | None:intergenic | 50.0% |
! | CTTTTGCGACGAGATGGTGT+TGG | + | chr5.4:17288272-17288291 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 17288188 | 17288592 | 17288188 | ID=MS.gene83460 |
chr5.4 | mRNA | 17288188 | 17288592 | 17288188 | ID=MS.gene83460.t1;Parent=MS.gene83460 |
chr5.4 | exon | 17288188 | 17288592 | 17288188 | ID=MS.gene83460.t1.exon1;Parent=MS.gene83460.t1 |
chr5.4 | CDS | 17288188 | 17288592 | 17288188 | ID=cds.MS.gene83460.t1;Parent=MS.gene83460.t1 |
Gene Sequence |
Protein sequence |