AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053760 MtrunA17_Chr1g0150791 89.859 1065 59 1 1 1016 1 1065 0.0 1933
Msa0053760 MtrunA17_Chr2g0300211 34.388 1201 587 31 2 1015 1 1187 2.98e-170 530
Msa0053760 MtrunA17_Chr4g0070741 35.299 1102 563 24 24 1015 9 1070 6.37e-170 526
Msa0053760 MtrunA17_Chr6g0483131 38.835 206 121 3 44 246 78 281 4.34e-34 141
Msa0053760 MtrunA17_Chr6g0483131 27.208 419 215 13 618 1012 514 866 6.09e-27 118
Msa0053760 MtrunA17_Chr8g0392621 36.782 174 104 3 76 246 126 296 8.60e-27 118
Msa0053760 MtrunA17_Chr8g0392621 25.059 427 223 14 618 1016 535 892 1.09e-24 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053760 AT5G26160.3 37.302 1008 526 25 18 994 8 940 1.25e-170 525
Msa0053760 AT5G26160.2 37.302 1008 526 25 18 994 8 940 1.78e-170 525
Msa0053760 AT5G26160.1 37.302 1008 526 25 18 994 8 940 1.78e-170 525
Msa0053760 AT5G20610.1 35.591 635 313 16 464 1016 544 1164 4.52e-92 318
Msa0053760 AT5G20610.1 40.063 317 153 6 26 320 13 314 1.18e-57 217
Msa0053760 AT1G42550.1 37.725 167 98 4 85 246 123 288 5.27e-26 115
Msa0053760 AT1G42550.1 25.478 314 156 12 552 826 458 732 2.85e-12 71.6

Find 217 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGATCTTCAAGAATTT+TGG 0.094286 1_2:+8255202 None:intergenic
ATGAAGTGAATGAATTTATT+AGG 0.170610 1_2:-8256962 Msa0053760:five_prime_UTR
TCTGATTTATCTTTAATTAT+TGG 0.172054 1_2:-8255281 Msa0053760:CDS
TGGCAGAAAGCGCAGTTATT+TGG 0.193805 1_2:-8254215 Msa0053760:CDS
CATGGATAGATTTCCTAAAT+TGG 0.196193 1_2:+8253682 None:intergenic
GTACATAGATGTTCGGTTTA+TGG 0.206716 1_2:-8256451 Msa0053760:CDS
GAGATGGTAGAAGGCTTAAA+AGG 0.248939 1_2:+8256781 None:intergenic
AATCTGTCTTCAAGTTAATA+AGG 0.251956 1_2:+8256137 None:intergenic
CATCCAAGGAGAACATAATT+TGG 0.267826 1_2:-8254332 Msa0053760:CDS
CACTTAAGTAGTGTTCTTCT+TGG 0.277300 1_2:+8255576 None:intergenic
ACTGAAACTGATTCAAATAT+TGG 0.283455 1_2:-8256865 Msa0053760:CDS
CACTTTGGGAACATGATATC+AGG 0.285981 1_2:+8253740 None:intergenic
ATCCGACACAATATGCTTAA+TGG 0.290782 1_2:+8254803 None:intergenic
TGGTGGTAACCGACAAGTTT+GGG 0.293482 1_2:-8253966 Msa0053760:CDS
AGAACCTGGTCTGGTGGATT+TGG 0.298861 1_2:-8255122 Msa0053760:CDS
TTCACCAATCGAAGGTAATA+TGG 0.301986 1_2:+8255067 None:intergenic
TGATTTATGCTTCTGTTGTT+GGG 0.305019 1_2:-8256378 Msa0053760:CDS
TTGTGCGAGCCTCATCATTC+AGG 0.308272 1_2:-8254964 Msa0053760:CDS
AGGTTGGTTGGAAAAGCTTT+AGG 0.311083 1_2:-8256244 Msa0053760:CDS
TTGATTTATGCTTCTGTTGT+TGG 0.316516 1_2:-8256379 Msa0053760:CDS
CACTGAGTTTAGAAGAGTTA+TGG 0.323931 1_2:-8256303 Msa0053760:CDS
TAATGTGGATGAGATTATTA+AGG 0.327179 1_2:-8255774 Msa0053760:CDS
ACTGGTTCATAATTTCTTAG+AGG 0.327756 1_2:+8254151 None:intergenic
ACTTACCAAAGAAGAGAAAA+AGG 0.328492 1_2:+8257196 None:intergenic
CTTTGAGTTTCAATGGTGTT+AGG 0.329725 1_2:-8256564 Msa0053760:CDS
GGCAGAAAGCGCAGTTATTT+GGG 0.332530 1_2:-8254214 Msa0053760:CDS
ACAAGAAATTGTCTTCAAAA+TGG 0.335837 1_2:-8256681 Msa0053760:CDS
CACTGGATACCGTATGTTCT+AGG 0.342638 1_2:-8255712 Msa0053760:CDS
AAGACTAACAAGGAAGCTTC+TGG 0.343748 1_2:-8254777 Msa0053760:CDS
AATTGTCTTCAAAATGGAAT+TGG 0.344941 1_2:-8256675 Msa0053760:CDS
TGTTTCCCAATGTCATGTTC+AGG 0.348192 1_2:+8256352 None:intergenic
GCTAGATTAAATGTTAGTTT+TGG 0.348664 1_2:-8256220 Msa0053760:CDS
GTAAGTGAGGATCTGTTGAT+AGG 0.349589 1_2:-8256706 Msa0053760:CDS
TTATGGGGTGATAAAAGTTC+AGG 0.358120 1_2:-8256286 Msa0053760:CDS
AAGGATGATTTAATGAGATT+TGG 0.360201 1_2:-8256184 Msa0053760:CDS
GCTCTGACATTGTTCACTTT+GGG 0.360351 1_2:+8253726 None:intergenic
TGCTCTGACATTGTTCACTT+TGG 0.361069 1_2:+8253725 None:intergenic
ACCAGTTGGAGTTCCAATAC+TGG 0.365800 1_2:-8254134 Msa0053760:CDS
AATCCACCAGACCAGGTTCT+TGG 0.366360 1_2:+8255125 None:intergenic
TCTTCATCGGATATTTCAAT+TGG 0.366592 1_2:+8255095 None:intergenic
TGAAGTGAATGAATTTATTA+GGG 0.366744 1_2:-8256961 Msa0053760:five_prime_UTR
TGAGATTTGGTGCTAGTAAT+GGG 0.369936 1_2:-8256171 Msa0053760:CDS
CGACGATCTTGATGGTTTGA+TGG 0.371384 1_2:-8254401 Msa0053760:CDS
AAAGGAATATTGTGTGGAAA+TGG 0.373622 1_2:+8257214 None:intergenic
CTTCATGTTCATTCGATTGA+GGG 0.378234 1_2:-8256592 Msa0053760:CDS
AATATTTGTTAAAACTTTCA+AGG 0.378277 1_2:+8256645 None:intergenic
AATGAAGCAGTGATGAATTC+TGG 0.379585 1_2:-8256025 Msa0053760:CDS
AACTGAATCCTCAATCTTCA+TGG 0.382045 1_2:+8255622 None:intergenic
AATGCGAATGAGGAGGGATT+GGG 0.384507 1_2:-8255347 Msa0053760:CDS
ACTGAGTTTAGAAGAGTTAT+GGG 0.386969 1_2:-8256302 Msa0053760:CDS
GAAAATGAGGCTCTAGCTTC+AGG 0.387737 1_2:-8255389 Msa0053760:CDS
AAGAGTTGACATACATGAAA+TGG 0.388521 1_2:-8254095 Msa0053760:CDS
CAATGGTTGAGACTTGATTC+TGG 0.388547 1_2:-8254358 Msa0053760:CDS
CCTTCGATTGGTGAAGGGCT+TGG 0.388984 1_2:-8255059 Msa0053760:CDS
ATGGTGGTAACCGACAAGTT+TGG 0.394268 1_2:-8253967 Msa0053760:CDS
ATCAAGGAGATTCATATTGC+AGG 0.400807 1_2:-8254004 Msa0053760:CDS
GTGATAAAAGTTCAGGGAAA+TGG 0.403771 1_2:-8256279 Msa0053760:CDS
TCAATCTTGTTAATAGTCAT+AGG 0.404954 1_2:+8254505 None:intergenic
TATAATGATGGGTTGGGAAA+TGG 0.405336 1_2:-8254259 Msa0053760:CDS
ACCAGTATTGGAACTCCAAC+TGG 0.408338 1_2:+8254133 None:intergenic
TATGGTGGTCGCGTCGTGTC+TGG 0.409194 1_2:-8256433 Msa0053760:CDS
AAGAAAAGATCATGTCCAAT+AGG 0.410891 1_2:+8253590 None:intergenic
GAACCGTCCAATACCCTTGA+TGG 0.412288 1_2:+8256496 None:intergenic
GGACTTCCTTTGAGTTTCAA+TGG 0.413613 1_2:-8256571 Msa0053760:CDS
TTTAAGACAGTTTGAAAATG+AGG 0.413809 1_2:-8255402 Msa0053760:CDS
TGATAAATTAATGCAACAAT+GGG 0.414227 1_2:-8255177 Msa0053760:CDS
ATCTTGATTCAACAATTTGT+TGG 0.416147 1_2:+8253823 None:intergenic
ATCACAGAATTATATAATGA+TGG 0.420774 1_2:-8254271 Msa0053760:CDS
AAGGAAAGGAAAAGGGTGAT+TGG 0.421702 1_2:+8257163 None:intergenic
ATTAAGCAAAGCTCTTTACT+TGG 0.426857 1_2:-8256812 Msa0053760:CDS
TAATGCGAATGAGGAGGGAT+TGG 0.434699 1_2:-8255348 Msa0053760:CDS
AACTTTGGTACATAGATGTT+CGG 0.436998 1_2:-8256458 Msa0053760:CDS
GGTTAAGTGTGCATTGGAAA+AGG 0.437103 1_2:-8256543 Msa0053760:CDS
CTAAAACAAGCAACATTGTC+GGG 0.437682 1_2:+8256106 None:intergenic
GTTCCAAATTATGTTCTCCT+TGG 0.441194 1_2:+8254329 None:intergenic
AGGAAAAGGGTGATTGGAAA+TGG 0.443271 1_2:+8257169 None:intergenic
TTCTTAGAGGATCTCTGTGC+TGG 0.444411 1_2:+8254164 None:intergenic
GGAGTACAAATCTACAGAAT+CGG 0.444771 1_2:+8253551 None:intergenic
ATGAGATTTGGTGCTAGTAA+TGG 0.445911 1_2:-8256172 Msa0053760:CDS
ACTGCGTCTCAGCAACAATC+CGG 0.449045 1_2:-8253941 Msa0053760:CDS
TTCTACCCCTTGTTCACTGA+TGG 0.449718 1_2:+8255871 None:intergenic
TCGTTCGAATTTGATCAAAC+AGG 0.452174 1_2:-8255833 Msa0053760:CDS
GACTTGCCCATCAAGGGTAT+TGG 0.456422 1_2:-8256503 Msa0053760:CDS
GAAATCAACGACGATCTTGA+TGG 0.458924 1_2:-8254409 Msa0053760:CDS
ACTGATAAGGTGAAAATAGA+TGG 0.459395 1_2:-8254235 Msa0053760:CDS
TAGAGACTAATGCACACATT+AGG 0.459516 1_2:-8253766 Msa0053760:CDS
TAGGAATGTGAATGTGGATA+TGG 0.460785 1_2:-8255693 Msa0053760:CDS
TCTGTTTCAGGAAGGGATCA+TGG 0.464848 1_2:-8254615 Msa0053760:intron
TCTTCATGTTCATTCGATTG+AGG 0.468038 1_2:-8256593 Msa0053760:CDS
AATTCTCCAAGAACCTGGTC+TGG 0.470655 1_2:-8255131 Msa0053760:CDS
GAATTATATAATGATGGGTT+GGG 0.472771 1_2:-8254265 Msa0053760:CDS
TTTCTTAAAGACGCTGGCAT+TGG 0.474864 1_2:-8255483 Msa0053760:CDS
AGATCCTCACTTACAAATCT+CGG 0.474977 1_2:+8256715 None:intergenic
AAGCAACAAAGGAAAGGAAA+AGG 0.477857 1_2:+8257155 None:intergenic
AGAATTATATAATGATGGGT+TGG 0.478189 1_2:-8254266 Msa0053760:CDS
TGCGGAGTTTGATGAAACTT+TGG 0.478584 1_2:-8256473 Msa0053760:CDS
GAGTACAAATCTACAGAATC+GGG 0.479741 1_2:+8253552 None:intergenic
TGTCAGTAACGTTGGATCAA+TGG 0.480802 1_2:-8254375 Msa0053760:CDS
GCCTGAGCTAAAACCAGTAT+TGG 0.481373 1_2:+8254121 None:intergenic
TAAGTGAGGATCTGTTGATA+GGG 0.484135 1_2:-8256705 Msa0053760:CDS
TTGAAAATTCTCCAAGAACC+TGG 0.492352 1_2:-8255136 Msa0053760:CDS
AATTATTGGTGCCGCGGAAG+AGG 0.495603 1_2:-8255267 Msa0053760:CDS
GACAATATTACACATGCCAC+TGG 0.497586 1_2:+8253901 None:intergenic
CTGATAAATTAATGCAACAA+TGG 0.498084 1_2:-8255178 Msa0053760:CDS
GATTTATGCTTCTGTTGTTG+GGG 0.498131 1_2:-8256377 Msa0053760:CDS
GATCCTCACTTACAAATCTC+GGG 0.499409 1_2:+8256716 None:intergenic
AACAGATAAAGACAAATGCT+TGG 0.500593 1_2:-8254554 Msa0053760:CDS
AGCATAAATCAAGAATCGCT+TGG 0.502217 1_2:+8256390 None:intergenic
AGATGGTAGAAGGCTTAAAA+GGG 0.502789 1_2:+8256782 None:intergenic
TCAATCTAGATTCAAAATCA+AGG 0.504472 1_2:-8254020 Msa0053760:CDS
ACGCAGTTCCCCAAACTTGT+CGG 0.504742 1_2:+8253957 None:intergenic
GGGAACCTGAACATGACATT+GGG 0.508776 1_2:-8256357 Msa0053760:CDS
AACAATGGGGTTTAGATGAG+AGG 0.511115 1_2:-8255163 Msa0053760:CDS
GTCAAGAAACTCTGACGTCT+CGG 0.513109 1_2:+8255598 None:intergenic
TAATTCAGCACGGGCAGACT+CGG 0.515926 1_2:-8255942 Msa0053760:CDS
ATCAATCATTAATGCAGAGA+AGG 0.520043 1_2:-8255229 Msa0053760:CDS
ATATTTGTTAAAACTTTCAA+GGG 0.523046 1_2:+8256646 None:intergenic
ATGCCTTTGCTAGATATCAC+TGG 0.527711 1_2:-8254831 Msa0053760:CDS
GTTGGGAAATGGCACTGATA+AGG 0.529156 1_2:-8254248 Msa0053760:CDS
AGCAACAATCCGGGTTGCGT+TGG 0.533759 1_2:-8253931 Msa0053760:CDS
AGCAACAAAGGAAAGGAAAA+GGG 0.534880 1_2:+8257156 None:intergenic
TTATCTGTTAAATAACTACA+TGG 0.535658 1_2:+8254568 None:intergenic
ATAGGGATGTCGTAAAGCTT+CGG 0.535896 1_2:-8256075 Msa0053760:CDS
TCACAGAATTATATAATGAT+GGG 0.538575 1_2:-8254270 Msa0053760:CDS
ATATTACCTTCGATTGGTGA+AGG 0.538823 1_2:-8255065 Msa0053760:CDS
ACATGACATTGGGAAACATC+AGG 0.539471 1_2:-8256347 Msa0053760:CDS
ACTTCCAAATCCACCAGACC+AGG 0.539639 1_2:+8255118 None:intergenic
GCAGTGATGAATTCTGGCTC+AGG 0.540966 1_2:-8256019 Msa0053760:CDS
TAACGCAAGATGTGATTCAC+TGG 0.542746 1_2:-8255729 Msa0053760:CDS
CTAAGAAATTATGAACCAGT+TGG 0.543091 1_2:-8254148 Msa0053760:CDS
TGTCTTAAAAGCTTCTCTCT+AGG 0.544252 1_2:+8255416 None:intergenic
TCTACCATCCATGAAGATTG+AGG 0.546459 1_2:-8255630 Msa0053760:CDS
TGTTGAATCAAGATATCTTG+TGG 0.547330 1_2:-8253814 Msa0053760:CDS
GATGGATCTGTCAGTAACGT+TGG 0.547375 1_2:-8254383 Msa0053760:CDS
TCATTTCGCTCAAGCTGTGA+CGG 0.549382 1_2:-8255452 Msa0053760:CDS
TCTCCAAGAACCTGGTCTGG+TGG 0.549400 1_2:-8255128 Msa0053760:CDS
ACTAAAACAAGCAACATTGT+CGG 0.549458 1_2:+8256105 None:intergenic
TACACTTGAACATAACTATG+AGG 0.551566 1_2:-8255318 Msa0053760:CDS
AAGCTTCTCTCTAGGAGACA+TGG 0.552937 1_2:+8255424 None:intergenic
ATTCTTAGCATTTCTGAAGA+GGG 0.553950 1_2:+8254986 None:intergenic
GTCTAGCATGTCAAATGAAG+AGG 0.553980 1_2:-8254452 Msa0053760:CDS
TTGCGTTGGTTGCTTTCCAG+TGG 0.555258 1_2:-8253917 Msa0053760:CDS
CCTATATCAAAAGCTTGATG+AGG 0.555755 1_2:-8255975 Msa0053760:CDS
CTATATCAAAAGCTTGATGA+GGG 0.556939 1_2:-8255974 Msa0053760:CDS
CTTGATTCTGGCATCATCCA+AGG 0.557881 1_2:-8254346 Msa0053760:CDS
AATTCTTAGCATTTCTGAAG+AGG 0.558323 1_2:+8254985 None:intergenic
TTAGCATTTCTGAAGAGGGA+AGG 0.560033 1_2:+8254990 None:intergenic
GTTGGTGAGATTTGAGAAGG+TGG 0.560894 1_2:+8257255 None:intergenic
TAATATGGACGGTTCTTCAT+CGG 0.561202 1_2:+8255082 None:intergenic
CCGCGGAAGAGGAGTATGAA+AGG 0.563504 1_2:-8255256 Msa0053760:CDS
CGCGGAAGAGGAGTATGAAA+GGG 0.564447 1_2:-8255255 Msa0053760:CDS
ATTTGAAAGCAACAAAGGAA+AGG 0.565310 1_2:+8257149 None:intergenic
CACATTAATGATTTCAACTG+TGG 0.565922 1_2:+8255790 None:intergenic
CTGCGTCTCAGCAACAATCC+GGG 0.567017 1_2:-8253940 Msa0053760:CDS
ATCTTTAATTATTGGTGCCG+CGG 0.568539 1_2:-8255273 Msa0053760:CDS
AGCTTCTCTCTAGGAGACAT+GGG 0.568860 1_2:+8255425 None:intergenic
CTAACACCATTGAAACTCAA+AGG 0.571841 1_2:+8256565 None:intergenic
TTTGCAGACTTGCCCATCAA+GGG 0.571889 1_2:-8256509 Msa0053760:CDS
TATTACCTTCGATTGGTGAA+GGG 0.575420 1_2:-8255064 Msa0053760:CDS
ATTCACATTCCTAGAACATA+CGG 0.576528 1_2:+8255703 None:intergenic
GGGGAACCTGAACATGACAT+TGG 0.579850 1_2:-8256358 Msa0053760:CDS
TATGGGGTGATAAAAGTTCA+GGG 0.580001 1_2:-8256285 Msa0053760:CDS
GTGTTAGGTTAAGTGTGCAT+TGG 0.583787 1_2:-8256549 Msa0053760:CDS
AACCGTCCAATACCCTTGAT+GGG 0.583938 1_2:+8256497 None:intergenic
ATCATTAATGCAGAGAAGGA+AGG 0.585207 1_2:-8255225 Msa0053760:CDS
CCGTCCATATTACCTTCGAT+TGG 0.585444 1_2:-8255071 Msa0053760:CDS
ATCCATTAAGCATATTGTGT+CGG 0.586015 1_2:-8254805 Msa0053760:CDS
TCTGAAGAGGGAAGGACACA+TGG 0.586443 1_2:+8254998 None:intergenic
GATTGATTTGAAAGCAACAA+AGG 0.587578 1_2:+8257144 None:intergenic
ATGCGAATGAGGAGGGATTG+GGG 0.589104 1_2:-8255346 Msa0053760:CDS
TCGTTTGTTCAAACTATGAG+CGG 0.591262 1_2:-8255035 Msa0053760:CDS
ATTGGATATACTTCTGTACA+TGG 0.591836 1_2:-8254898 Msa0053760:CDS
GGAAAGCAACCAACGCAACC+CGG 0.594488 1_2:+8253922 None:intergenic
GAATCCTCAATCTTCATGGA+TGG 0.594679 1_2:+8255626 None:intergenic
ATTTCTCCACGAATGCATGA+TGG 0.595591 1_2:+8254427 None:intergenic
AGGGGTAGAAACATCTGAAG+AGG 0.598445 1_2:-8255858 Msa0053760:CDS
CATAGATGTTCGGTTTATGG+TGG 0.601478 1_2:-8256448 Msa0053760:CDS
GAACTTCAATAATTCAGCAC+GGG 0.606552 1_2:-8255951 Msa0053760:CDS
GAGGCACCATCATGCATTCG+TGG 0.607479 1_2:-8254433 Msa0053760:CDS
ACAATGGGGTTTAGATGAGA+GGG 0.609250 1_2:-8255162 Msa0053760:CDS
ACAAATCTACAGAATCGGGA+AGG 0.611751 1_2:+8253556 None:intergenic
AAGGGTATTGGACGGTTCTG+CGG 0.613657 1_2:-8256491 Msa0053760:CDS
CACAGTTGAAATCATTAATG+TGG 0.613849 1_2:-8255789 Msa0053760:CDS
CAAATCTACAGAATCGGGAA+GGG 0.613898 1_2:+8253557 None:intergenic
GAGTCTGAAAATAAAGATGT+TGG 0.617219 1_2:-8256892 Msa0053760:CDS
TGCCCATCAAGGGTATTGGA+CGG 0.622258 1_2:-8256499 Msa0053760:CDS
GATTAGAAGCCTGAATGATG+AGG 0.627712 1_2:+8254955 None:intergenic
ATGACATCATCCAAGCTATG+TGG 0.628164 1_2:+8255524 None:intergenic
GCAGACTCGGAGTCATCTCA+AGG 0.629555 1_2:-8255929 Msa0053760:CDS
CTAACAAGGAAGCTTCTGGA+AGG 0.630482 1_2:-8254773 Msa0053760:intron
CCAAGCCCTTCACCAATCGA+AGG 0.641764 1_2:+8255059 None:intergenic
GAGTGATTTCTTAAAGACGC+TGG 0.643107 1_2:-8255489 Msa0053760:CDS
TTTCCAGTGATATCTAGCAA+AGG 0.643248 1_2:+8254828 None:intergenic
TTTGTTCAAACTATGAGCGG+AGG 0.644551 1_2:-8255032 Msa0053760:CDS
GGAACTTCAATAATTCAGCA+CGG 0.650508 1_2:-8255952 Msa0053760:CDS
GTGGTTGGTGAGATTTGAGA+AGG 0.651344 1_2:+8257252 None:intergenic
CCAATCGAAGGTAATATGGA+CGG 0.651476 1_2:+8255071 None:intergenic
AAGTGAGGATCTGTTGATAG+GGG 0.655616 1_2:-8256704 Msa0053760:CDS
AACACCACGTCATTCTGAGT+CGG 0.655925 1_2:+8256052 None:intergenic
AACATGGTTATCATGTCATG+TGG 0.657702 1_2:+8257056 None:intergenic
CCTTTCATACTCCTCTTCCG+CGG 0.659309 1_2:+8255256 None:intergenic
AACATCAGGTTGATCTCACT+AGG 0.663911 1_2:-8256333 Msa0053760:CDS
TGAGATTTGAGAAGGTGGAG+TGG 0.668267 1_2:+8257260 None:intergenic
GGTGGTAACCGACAAGTTTG+GGG 0.668885 1_2:-8253965 Msa0053760:CDS
ATGTTCTAGGAATGTGAATG+TGG 0.669689 1_2:-8255699 Msa0053760:CDS
GATGGTAGAAGGCTTAAAAG+GGG 0.670150 1_2:+8256783 None:intergenic
AAACCCGAGATTTGTAAGTG+AGG 0.672556 1_2:-8256719 Msa0053760:CDS
TTTGGGAGAGCACATAACAG+TGG 0.673391 1_2:-8254197 Msa0053760:CDS
CTGAGTTTAGAAGAGTTATG+GGG 0.676392 1_2:-8256301 Msa0053760:CDS
TAAAACAAGCAACATTGTCG+GGG 0.684076 1_2:+8256107 None:intergenic
TATATCAAAAGCTTGATGAG+GGG 0.686474 1_2:-8255973 Msa0053760:CDS
TAAAAGACAGCAAAACAACA+TGG 0.692020 1_2:+8257040 None:intergenic
GATAAATTAATGCAACAATG+GGG 0.695430 1_2:-8255176 Msa0053760:CDS
GTCGGATGCTAAGACTAACA+AGG 0.709457 1_2:-8254787 Msa0053760:CDS
CATAACTCTTCTAAACTCAG+TGG 0.721585 1_2:+8256304 None:intergenic
TAACTATGAGGATTATGACG+TGG 0.723957 1_2:-8255306 Msa0053760:CDS
TCGGCCGACTCAGAATGACG+TGG 0.772807 1_2:-8256056 Msa0053760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTATCTATCAT+AGG - chr1_2:8253764-8253783 Msa0053760:CDS 10.0%
!! TAGATAAAAAAAAAAAAGAC+AGG + chr1_2:8253760-8253779 None:intergenic 15.0%
!!! ATATTTGTTAAAACTTTCAA+GGG + chr1_2:8254202-8254221 None:intergenic 15.0%
!!! AATATTTGTTAAAACTTTCA+AGG + chr1_2:8254203-8254222 None:intergenic 15.0%
!!! TTGAAAGTTTTAACAAATAT+TGG - chr1_2:8254202-8254221 Msa0053760:CDS 15.0%
!! TCTGATTTATCTTTAATTAT+TGG - chr1_2:8255564-8255583 Msa0053760:CDS 15.0%
!! ATGAAGTGAATGAATTTATT+AGG - chr1_2:8253883-8253902 Msa0053760:CDS 20.0%
!! TGAAGTGAATGAATTTATTA+GGG - chr1_2:8253884-8253903 Msa0053760:CDS 20.0%
!!! TTGTTTTAGTTCTAACAATA+GGG - chr1_2:8254753-8254772 Msa0053760:intron 20.0%
!! TGATAAATTAATGCAACAAT+GGG - chr1_2:8255668-8255687 Msa0053760:CDS 20.0%
!! AAAAATAGGTAACGATATAT+TGG - chr1_2:8255929-8255948 Msa0053760:CDS 20.0%
!! TTATCTGTTAAATAACTACA+TGG + chr1_2:8256280-8256299 None:intergenic 20.0%
!!! ATTGAATCTCTTTTAATAGA+AGG - chr1_2:8256358-8256377 Msa0053760:CDS 20.0%
!!! TTGAATCTCTTTTAATAGAA+GGG - chr1_2:8256359-8256378 Msa0053760:CDS 20.0%
!! ATCACAGAATTATATAATGA+TGG - chr1_2:8256574-8256593 Msa0053760:CDS 20.0%
!! TCACAGAATTATATAATGAT+GGG - chr1_2:8256575-8256594 Msa0053760:CDS 20.0%
!!! TTTACAGTTTTACTTTTACA+TGG + chr1_2:8257184-8257203 None:intergenic 20.0%
!!! TTGACATGTATTGTATTTTA+TGG - chr1_2:8257232-8257251 Msa0053760:five_prime_UTR 20.0%
!! ATATTCCTTTTTCTCTTCTT+TGG - chr1_2:8253644-8253663 Msa0053760:three_prime_UTR 25.0%
!!! TAGAATGTTTTAAAATCGAG+AGG + chr1_2:8253734-8253753 None:intergenic 25.0%
! AACAAGATCAGTTAAAAACA+TGG + chr1_2:8253842-8253861 None:intergenic 25.0%
!! TTATTTTCAGACTCAAAGTT+TGG + chr1_2:8253947-8253966 None:intergenic 25.0%
!! ACTGAAACTGATTCAAATAT+TGG - chr1_2:8253980-8253999 Msa0053760:CDS 25.0%
!!! TAAGTTGAGATTTTGACAAA+CGG + chr1_2:8254102-8254121 None:intergenic 25.0%
! ACAAGAAATTGTCTTCAAAA+TGG - chr1_2:8254164-8254183 Msa0053760:CDS 25.0%
! AATTGTCTTCAAAATGGAAT+TGG - chr1_2:8254170-8254189 Msa0053760:CDS 25.0%
!!! GCTAGATTAAATGTTAGTTT+TGG - chr1_2:8254625-8254644 Msa0053760:intron 25.0%
!!! TTTTGGTTATCAAGTAATGA+AGG - chr1_2:8254642-8254661 Msa0053760:intron 25.0%
! AAGGATGATTTAATGAGATT+TGG - chr1_2:8254661-8254680 Msa0053760:intron 25.0%
!! AATCTGTCTTCAAGTTAATA+AGG + chr1_2:8254711-8254730 None:intergenic 25.0%
!!! CTTGTTTTAGTTCTAACAAT+AGG - chr1_2:8254752-8254771 Msa0053760:intron 25.0%
! TAATGTGGATGAGATTATTA+AGG - chr1_2:8255071-8255090 Msa0053760:CDS 25.0%
!! TTTAAGACAGTTTGAAAATG+AGG - chr1_2:8255443-8255462 Msa0053760:CDS 25.0%
!!! TTTTGATTTTAATGCGAATG+AGG - chr1_2:8255488-8255507 Msa0053760:CDS 25.0%
! CTGATAAATTAATGCAACAA+TGG - chr1_2:8255667-8255686 Msa0053760:CDS 25.0%
! GATAAATTAATGCAACAATG+GGG - chr1_2:8255669-8255688 Msa0053760:CDS 25.0%
! TCAAATGCTTGGAATAAAAA+AGG + chr1_2:8256178-8256197 None:intergenic 25.0%
! ACAGAAATAAATCAAATGCT+TGG + chr1_2:8256189-8256208 None:intergenic 25.0%
! TCAATCTTGTTAATAGTCAT+AGG + chr1_2:8256343-8256362 None:intergenic 25.0%
!!! AGAATTATATAATGATGGGT+TGG - chr1_2:8256579-8256598 Msa0053760:CDS 25.0%
!!! GAATTATATAATGATGGGTT+GGG - chr1_2:8256580-8256599 Msa0053760:CDS 25.0%
!! TTGATTTTGAATCTAGATTG+AGG + chr1_2:8256826-8256845 None:intergenic 25.0%
! TCAATCTAGATTCAAAATCA+AGG - chr1_2:8256825-8256844 Msa0053760:CDS 25.0%
! ATCTTGATTCAACAATTTGT+TGG + chr1_2:8257025-8257044 None:intergenic 25.0%
!! TATTGTATTTTATGGCCTAT+TGG - chr1_2:8257240-8257259 Msa0053760:five_prime_UTR 25.0%
AGAAGAAGAAAAAAAGTGGT+TGG + chr1_2:8253611-8253630 None:intergenic 30.0%
ATGGAGAAGAAGAAAAAAAG+TGG + chr1_2:8253615-8253634 None:intergenic 30.0%
AAAGGAATATTGTGTGGAAA+TGG + chr1_2:8253634-8253653 None:intergenic 30.0%
AGAGAAAAAGGAATATTGTG+TGG + chr1_2:8253640-8253659 None:intergenic 30.0%
ACTTACCAAAGAAGAGAAAA+AGG + chr1_2:8253652-8253671 None:intergenic 30.0%
ATTTGAAAGCAACAAAGGAA+AGG + chr1_2:8253699-8253718 None:intergenic 30.0%
!! GATTGATTTGAAAGCAACAA+AGG + chr1_2:8253704-8253723 None:intergenic 30.0%
TAAAAGACAGCAAAACAACA+TGG + chr1_2:8253808-8253827 None:intergenic 30.0%
GAGTCTGAAAATAAAGATGT+TGG - chr1_2:8253953-8253972 Msa0053760:CDS 30.0%
ATTAAGCAAAGCTCTTTACT+TGG - chr1_2:8254033-8254052 Msa0053760:CDS 30.0%
AACTTTGGTACATAGATGTT+CGG - chr1_2:8254387-8254406 Msa0053760:CDS 30.0%
TTGATTTATGCTTCTGTTGT+TGG - chr1_2:8254466-8254485 Msa0053760:CDS 30.0%
TGATTTATGCTTCTGTTGTT+GGG - chr1_2:8254467-8254486 Msa0053760:CDS 30.0%
ACTGAGTTTAGAAGAGTTAT+GGG - chr1_2:8254543-8254562 Msa0053760:CDS 30.0%
ACTAAAACAAGCAACATTGT+CGG + chr1_2:8254743-8254762 None:intergenic 30.0%
CTATATCAAAAGCTTGATGA+GGG - chr1_2:8254871-8254890 Msa0053760:CDS 30.0%
TATATCAAAAGCTTGATGAG+GGG - chr1_2:8254872-8254891 Msa0053760:CDS 30.0%
! AATTTTCCATCAGTGAACAA+GGG - chr1_2:8254968-8254987 Msa0053760:CDS 30.0%
CACATTAATGATTTCAACTG+TGG + chr1_2:8255058-8255077 None:intergenic 30.0%
CACAGTTGAAATCATTAATG+TGG - chr1_2:8255056-8255075 Msa0053760:CDS 30.0%
ATTCACATTCCTAGAACATA+CGG + chr1_2:8255145-8255164 None:intergenic 30.0%
TACACTTGAACATAACTATG+AGG - chr1_2:8255527-8255546 Msa0053760:CDS 30.0%
ATCAATCATTAATGCAGAGA+AGG - chr1_2:8255616-8255635 Msa0053760:CDS 30.0%
! CTCAAGATCTTCAAGAATTT+TGG + chr1_2:8255646-8255665 None:intergenic 30.0%
TCTTCATCGGATATTTCAAT+TGG + chr1_2:8255753-8255772 None:intergenic 30.0%
! ATTCTTAGCATTTCTGAAGA+GGG + chr1_2:8255862-8255881 None:intergenic 30.0%
! AATTCTTAGCATTTCTGAAG+AGG + chr1_2:8255863-8255882 None:intergenic 30.0%
!!! ATATCGTTACCTATTTTTGC+AGG + chr1_2:8255927-8255946 None:intergenic 30.0%
ATTGGATATACTTCTGTACA+TGG - chr1_2:8255947-8255966 Msa0053760:CDS 30.0%
ATCCATTAAGCATATTGTGT+CGG - chr1_2:8256040-8256059 Msa0053760:CDS 30.0%
TCCATGAATAATTCTGTTTC+AGG - chr1_2:8256218-8256237 Msa0053760:CDS 30.0%
TCCTGAAACAGAATTATTCA+TGG + chr1_2:8256222-8256241 None:intergenic 30.0%
TGAATAATTCTGTTTCAGGA+AGG - chr1_2:8256222-8256241 Msa0053760:CDS 30.0%
GAATAATTCTGTTTCAGGAA+GGG - chr1_2:8256223-8256242 Msa0053760:CDS 30.0%
AACAGATAAAGACAAATGCT+TGG - chr1_2:8256291-8256310 Msa0053760:CDS 30.0%
ACTGATAAGGTGAAAATAGA+TGG - chr1_2:8256610-8256629 Msa0053760:CDS 30.0%
! ACTGGTTCATAATTTCTTAG+AGG + chr1_2:8256697-8256716 None:intergenic 30.0%
CTAAGAAATTATGAACCAGT+TGG - chr1_2:8256697-8256716 Msa0053760:CDS 30.0%
AAGAGTTGACATACATGAAA+TGG - chr1_2:8256750-8256769 Msa0053760:CDS 30.0%
! ATTTTGAATCTAGATTGAGG+TGG + chr1_2:8256823-8256842 None:intergenic 30.0%
TGTTGAATCAAGATATCTTG+TGG - chr1_2:8257031-8257050 Msa0053760:five_prime_UTR 30.0%
CATGGATAGATTTCCTAAAT+TGG + chr1_2:8257166-8257185 None:intergenic 30.0%
AAGAAAAGATCATGTCCAAT+AGG + chr1_2:8257258-8257277 None:intergenic 30.0%
AGCAACAAAGGAAAGGAAAA+GGG + chr1_2:8253692-8253711 None:intergenic 35.0%
AAGCAACAAAGGAAAGGAAA+AGG + chr1_2:8253693-8253712 None:intergenic 35.0%
AACATGGTTATCATGTCATG+TGG + chr1_2:8253792-8253811 None:intergenic 35.0%
AGATGGTAGAAGGCTTAAAA+GGG + chr1_2:8254066-8254085 None:intergenic 35.0%
AGATCCTCACTTACAAATCT+CGG + chr1_2:8254133-8254152 None:intergenic 35.0%
TAAGTGAGGATCTGTTGATA+GGG - chr1_2:8254140-8254159 Msa0053760:CDS 35.0%
TCTTCATGTTCATTCGATTG+AGG - chr1_2:8254252-8254271 Msa0053760:CDS 35.0%
CTTCATGTTCATTCGATTGA+GGG - chr1_2:8254253-8254272 Msa0053760:CDS 35.0%
CTAACACCATTGAAACTCAA+AGG + chr1_2:8254283-8254302 None:intergenic 35.0%
! CTTTGAGTTTCAATGGTGTT+AGG - chr1_2:8254281-8254300 Msa0053760:CDS 35.0%
GTACATAGATGTTCGGTTTA+TGG - chr1_2:8254394-8254413 Msa0053760:CDS 35.0%
AGCATAAATCAAGAATCGCT+TGG + chr1_2:8254458-8254477 None:intergenic 35.0%
GATTTATGCTTCTGTTGTTG+GGG - chr1_2:8254468-8254487 Msa0053760:CDS 35.0%
CATAACTCTTCTAAACTCAG+TGG + chr1_2:8254544-8254563 None:intergenic 35.0%
CACTGAGTTTAGAAGAGTTA+TGG - chr1_2:8254542-8254561 Msa0053760:CDS 35.0%
CTGAGTTTAGAAGAGTTATG+GGG - chr1_2:8254544-8254563 Msa0053760:CDS 35.0%
TTATGGGGTGATAAAAGTTC+AGG - chr1_2:8254559-8254578 Msa0053760:CDS 35.0%
TATGGGGTGATAAAAGTTCA+GGG - chr1_2:8254560-8254579 Msa0053760:CDS 35.0%
GTGATAAAAGTTCAGGGAAA+TGG - chr1_2:8254566-8254585 Msa0053760:CDS 35.0%
! GGAAATGGAGTACAAGTTTT+AGG - chr1_2:8254581-8254600 Msa0053760:CDS 35.0%
!!! ATGGAGTACAAGTTTTAGGT+TGG - chr1_2:8254585-8254604 Msa0053760:CDS 35.0%
!!! AGTACAAGTTTTAGGTTGGT+TGG - chr1_2:8254589-8254608 Msa0053760:CDS 35.0%
!! ATGAGATTTGGTGCTAGTAA+TGG - chr1_2:8254673-8254692 Msa0053760:intron 35.0%
!! TGAGATTTGGTGCTAGTAAT+GGG - chr1_2:8254674-8254693 Msa0053760:intron 35.0%
TAAAACAAGCAACATTGTCG+GGG + chr1_2:8254741-8254760 None:intergenic 35.0%
CTAAAACAAGCAACATTGTC+GGG + chr1_2:8254742-8254761 None:intergenic 35.0%
AATGAAGCAGTGATGAATTC+TGG - chr1_2:8254820-8254839 Msa0053760:CDS 35.0%
! CCTCATCAAGCTTTTGATAT+AGG + chr1_2:8254873-8254892 None:intergenic 35.0%
CCTATATCAAAAGCTTGATG+AGG - chr1_2:8254870-8254889 Msa0053760:CDS 35.0%
GGAACTTCAATAATTCAGCA+CGG - chr1_2:8254893-8254912 Msa0053760:CDS 35.0%
GAACTTCAATAATTCAGCAC+GGG - chr1_2:8254894-8254913 Msa0053760:CDS 35.0%
! GAATTTTCCATCAGTGAACA+AGG - chr1_2:8254967-8254986 Msa0053760:CDS 35.0%
! ATTTTCCATCAGTGAACAAG+GGG - chr1_2:8254969-8254988 Msa0053760:CDS 35.0%
TCGTTCGAATTTGATCAAAC+AGG - chr1_2:8255012-8255031 Msa0053760:CDS 35.0%
!! ATGTTCTAGGAATGTGAATG+TGG - chr1_2:8255146-8255165 Msa0053760:CDS 35.0%
TAGGAATGTGAATGTGGATA+TGG - chr1_2:8255152-8255171 Msa0053760:CDS 35.0%
AACTGAATCCTCAATCTTCA+TGG + chr1_2:8255226-8255245 None:intergenic 35.0%
CACTTAAGTAGTGTTCTTCT+TGG + chr1_2:8255272-8255291 None:intergenic 35.0%
ACATAAAAAGCCACATAGCT+TGG - chr1_2:8255311-8255330 Msa0053760:CDS 35.0%
TGTCTTAAAAGCTTCTCTCT+AGG + chr1_2:8255432-8255451 None:intergenic 35.0%
!! TGATTTTAATGCGAATGAGG+AGG - chr1_2:8255491-8255510 Msa0053760:CDS 35.0%
!! GATTTTAATGCGAATGAGGA+GGG - chr1_2:8255492-8255511 Msa0053760:CDS 35.0%
TAACTATGAGGATTATGACG+TGG - chr1_2:8255539-8255558 Msa0053760:CDS 35.0%
!! ATCTTTAATTATTGGTGCCG+CGG - chr1_2:8255572-8255591 Msa0053760:CDS 35.0%
ATCATTAATGCAGAGAAGGA+AGG - chr1_2:8255620-8255639 Msa0053760:CDS 35.0%
TTGAAAATTCTCCAAGAACC+TGG - chr1_2:8255709-8255728 Msa0053760:CDS 35.0%
TAATATGGACGGTTCTTCAT+CGG + chr1_2:8255766-8255785 None:intergenic 35.0%
TTCACCAATCGAAGGTAATA+TGG + chr1_2:8255781-8255800 None:intergenic 35.0%
ATATTACCTTCGATTGGTGA+AGG - chr1_2:8255780-8255799 Msa0053760:CDS 35.0%
TATTACCTTCGATTGGTGAA+GGG - chr1_2:8255781-8255800 Msa0053760:CDS 35.0%
TCGTTTGTTCAAACTATGAG+CGG - chr1_2:8255810-8255829 Msa0053760:CDS 35.0%
TTTCCAGTGATATCTAGCAA+AGG + chr1_2:8256020-8256039 None:intergenic 35.0%
ATCCGACACAATATGCTTAA+TGG + chr1_2:8256045-8256064 None:intergenic 35.0%
CATCCAAGGAGAACATAATT+TGG - chr1_2:8256513-8256532 Msa0053760:CDS 35.0%
GTTCCAAATTATGTTCTCCT+TGG + chr1_2:8256519-8256538 None:intergenic 35.0%
!! TATAATGATGGGTTGGGAAA+TGG - chr1_2:8256586-8256605 Msa0053760:CDS 35.0%
ATCAAGGAGATTCATATTGC+AGG - chr1_2:8256841-8256860 Msa0053760:CDS 35.0%
TAGAGACTAATGCACACATT+AGG - chr1_2:8257079-8257098 Msa0053760:five_prime_UTR 35.0%
!!! CTTGCTGTTTTAGCCAATTT+AGG - chr1_2:8257150-8257169 Msa0053760:five_prime_UTR 35.0%
GAGTACAAATCTACAGAATC+GGG + chr1_2:8257296-8257315 None:intergenic 35.0%
GGAGTACAAATCTACAGAAT+CGG + chr1_2:8257297-8257316 None:intergenic 35.0%
AGGAAAAGGGTGATTGGAAA+TGG + chr1_2:8253679-8253698 None:intergenic 40.0%
AAGGAAAGGAAAAGGGTGAT+TGG + chr1_2:8253685-8253704 None:intergenic 40.0%
GATGGTAGAAGGCTTAAAAG+GGG + chr1_2:8254065-8254084 None:intergenic 40.0%
GAGATGGTAGAAGGCTTAAA+AGG + chr1_2:8254067-8254086 None:intergenic 40.0%
! TTTTCAGCAGAGATGGTAGA+AGG + chr1_2:8254076-8254095 None:intergenic 40.0%
AAACCCGAGATTTGTAAGTG+AGG - chr1_2:8254126-8254145 Msa0053760:CDS 40.0%
GATCCTCACTTACAAATCTC+GGG + chr1_2:8254132-8254151 None:intergenic 40.0%
GTAAGTGAGGATCTGTTGAT+AGG - chr1_2:8254139-8254158 Msa0053760:CDS 40.0%
! AAGTGAGGATCTGTTGATAG+GGG - chr1_2:8254141-8254160 Msa0053760:CDS 40.0%
! GGACTTCCTTTGAGTTTCAA+TGG - chr1_2:8254274-8254293 Msa0053760:CDS 40.0%
GTGTTAGGTTAAGTGTGCAT+TGG - chr1_2:8254296-8254315 Msa0053760:CDS 40.0%
GGTTAAGTGTGCATTGGAAA+AGG - chr1_2:8254302-8254321 Msa0053760:CDS 40.0%
TGCGGAGTTTGATGAAACTT+TGG - chr1_2:8254372-8254391 Msa0053760:CDS 40.0%
CATAGATGTTCGGTTTATGG+TGG - chr1_2:8254397-8254416 Msa0053760:CDS 40.0%
TGTTTCCCAATGTCATGTTC+AGG + chr1_2:8254496-8254515 None:intergenic 40.0%
ACATGACATTGGGAAACATC+AGG - chr1_2:8254498-8254517 Msa0053760:CDS 40.0%
!! AACATCAGGTTGATCTCACT+AGG - chr1_2:8254512-8254531 Msa0053760:CDS 40.0%
! AGGTTGGTTGGAAAAGCTTT+AGG - chr1_2:8254601-8254620 Msa0053760:CDS 40.0%
ATAGGGATGTCGTAAAGCTT+CGG - chr1_2:8254770-8254789 Msa0053760:intron 40.0%
TAACGCAAGATGTGATTCAC+TGG - chr1_2:8255116-8255135 Msa0053760:CDS 40.0%
TCTACCATCCATGAAGATTG+AGG - chr1_2:8255215-8255234 Msa0053760:CDS 40.0%
GAATCCTCAATCTTCATGGA+TGG + chr1_2:8255222-8255241 None:intergenic 40.0%
ATGACATCATCCAAGCTATG+TGG + chr1_2:8255324-8255343 None:intergenic 40.0%
GAGTGATTTCTTAAAGACGC+TGG - chr1_2:8255356-8255375 Msa0053760:CDS 40.0%
TTTCTTAAAGACGCTGGCAT+TGG - chr1_2:8255362-8255381 Msa0053760:CDS 40.0%
AACAATGGGGTTTAGATGAG+AGG - chr1_2:8255682-8255701 Msa0053760:CDS 40.0%
ACAATGGGGTTTAGATGAGA+GGG - chr1_2:8255683-8255702 Msa0053760:CDS 40.0%
CCAATCGAAGGTAATATGGA+CGG + chr1_2:8255777-8255796 None:intergenic 40.0%
TTTGTTCAAACTATGAGCGG+AGG - chr1_2:8255813-8255832 Msa0053760:CDS 40.0%
! TTAGCATTTCTGAAGAGGGA+AGG + chr1_2:8255858-8255877 None:intergenic 40.0%
GATTAGAAGCCTGAATGATG+AGG + chr1_2:8255893-8255912 None:intergenic 40.0%
! ATTTTTGCAGGTAGAACGAC+TGG + chr1_2:8255915-8255934 None:intergenic 40.0%
GTCGTTCTACCTGCAAAAAT+AGG - chr1_2:8255915-8255934 Msa0053760:CDS 40.0%
ATGCCTTTGCTAGATATCAC+TGG - chr1_2:8256014-8256033 Msa0053760:CDS 40.0%
AAGACTAACAAGGAAGCTTC+TGG - chr1_2:8256068-8256087 Msa0053760:CDS 40.0%
GTCTAGCATGTCAAATGAAG+AGG - chr1_2:8256393-8256412 Msa0053760:CDS 40.0%
ATTTCTCCACGAATGCATGA+TGG + chr1_2:8256421-8256440 None:intergenic 40.0%
GAAATCAACGACGATCTTGA+TGG - chr1_2:8256436-8256455 Msa0053760:CDS 40.0%
TGTCAGTAACGTTGGATCAA+TGG - chr1_2:8256470-8256489 Msa0053760:CDS 40.0%
CAATGGTTGAGACTTGATTC+TGG - chr1_2:8256487-8256506 Msa0053760:CDS 40.0%
!!! TCCAATACTGGTTTTAGCTC+AGG - chr1_2:8256723-8256742 Msa0053760:CDS 40.0%
!!! GGTTACCACCATTTTTGGTA+AGG + chr1_2:8256870-8256889 None:intergenic 40.0%
!! TTGTCGGTTACCACCATTTT+TGG + chr1_2:8256875-8256894 None:intergenic 40.0%
GACAATATTACACATGCCAC+TGG + chr1_2:8256947-8256966 None:intergenic 40.0%
! CACTTTGGGAACATGATATC+AGG + chr1_2:8257108-8257127 None:intergenic 40.0%
GCTCTGACATTGTTCACTTT+GGG + chr1_2:8257122-8257141 None:intergenic 40.0%
TGCTCTGACATTGTTCACTT+TGG + chr1_2:8257123-8257142 None:intergenic 40.0%
CAAATCTACAGAATCGGGAA+GGG + chr1_2:8257291-8257310 None:intergenic 40.0%
ACAAATCTACAGAATCGGGA+AGG + chr1_2:8257292-8257311 None:intergenic 40.0%
TGAGATTTGAGAAGGTGGAG+TGG + chr1_2:8253588-8253607 None:intergenic 45.0%
! GTTGGTGAGATTTGAGAAGG+TGG + chr1_2:8253593-8253612 None:intergenic 45.0%
!! GTGGTTGGTGAGATTTGAGA+AGG + chr1_2:8253596-8253615 None:intergenic 45.0%
!!! ACGGTCTTTTTCAGCAGAGA+TGG + chr1_2:8254083-8254102 None:intergenic 45.0%
! TTTTGCAGACTTGCCCATCA+AGG - chr1_2:8254335-8254354 Msa0053760:CDS 45.0%
TTTGCAGACTTGCCCATCAA+GGG - chr1_2:8254336-8254355 Msa0053760:CDS 45.0%
AACCGTCCAATACCCTTGAT+GGG + chr1_2:8254351-8254370 None:intergenic 45.0%
GGGAACCTGAACATGACATT+GGG - chr1_2:8254488-8254507 Msa0053760:CDS 45.0%
AACACCACGTCATTCTGAGT+CGG + chr1_2:8254796-8254815 None:intergenic 45.0%
TTCTACCCCTTGTTCACTGA+TGG + chr1_2:8254977-8254996 None:intergenic 45.0%
AGGGGTAGAAACATCTGAAG+AGG - chr1_2:8254987-8255006 Msa0053760:CDS 45.0%
CACTGGATACCGTATGTTCT+AGG - chr1_2:8255133-8255152 Msa0053760:CDS 45.0%
GTCAAGAAACTCTGACGTCT+CGG + chr1_2:8255250-8255269 None:intergenic 45.0%
TCATTTCGCTCAAGCTGTGA+CGG - chr1_2:8255393-8255412 Msa0053760:CDS 45.0%
! AGCTTCTCTCTAGGAGACAT+GGG + chr1_2:8255423-8255442 None:intergenic 45.0%
! AAGCTTCTCTCTAGGAGACA+TGG + chr1_2:8255424-8255443 None:intergenic 45.0%
! GAAAATGAGGCTCTAGCTTC+AGG - chr1_2:8255456-8255475 Msa0053760:CDS 45.0%
TAATGCGAATGAGGAGGGAT+TGG - chr1_2:8255497-8255516 Msa0053760:CDS 45.0%
AATGCGAATGAGGAGGGATT+GGG - chr1_2:8255498-8255517 Msa0053760:CDS 45.0%
AATTCTCCAAGAACCTGGTC+TGG - chr1_2:8255714-8255733 Msa0053760:CDS 45.0%
CCGTCCATATTACCTTCGAT+TGG - chr1_2:8255774-8255793 Msa0053760:CDS 45.0%
GTCGGATGCTAAGACTAACA+AGG - chr1_2:8256058-8256077 Msa0053760:CDS 45.0%
CTAACAAGGAAGCTTCTGGA+AGG - chr1_2:8256072-8256091 Msa0053760:CDS 45.0%
TCTGTTTCAGGAAGGGATCA+TGG - chr1_2:8256230-8256249 Msa0053760:CDS 45.0%
! CGACGATCTTGATGGTTTGA+TGG - chr1_2:8256444-8256463 Msa0053760:CDS 45.0%
GATGGATCTGTCAGTAACGT+TGG - chr1_2:8256462-8256481 Msa0053760:CDS 45.0%
CTTGATTCTGGCATCATCCA+AGG - chr1_2:8256499-8256518 Msa0053760:CDS 45.0%
!! GTTGGGAAATGGCACTGATA+AGG - chr1_2:8256597-8256616 Msa0053760:CDS 45.0%
! TGGCAGAAAGCGCAGTTATT+TGG - chr1_2:8256630-8256649 Msa0053760:CDS 45.0%
! GGCAGAAAGCGCAGTTATTT+GGG - chr1_2:8256631-8256650 Msa0053760:CDS 45.0%
! TTTGGGAGAGCACATAACAG+TGG - chr1_2:8256648-8256667 Msa0053760:CDS 45.0%
TTCTTAGAGGATCTCTGTGC+TGG + chr1_2:8256684-8256703 None:intergenic 45.0%
ACCAGTTGGAGTTCCAATAC+TGG - chr1_2:8256711-8256730 Msa0053760:CDS 45.0%
! ACCAGTATTGGAACTCCAAC+TGG + chr1_2:8256715-8256734 None:intergenic 45.0%
GCCTGAGCTAAAACCAGTAT+TGG + chr1_2:8256727-8256746 None:intergenic 45.0%
GCAGGTGTCCTTACCAAAAA+TGG - chr1_2:8256859-8256878 Msa0053760:CDS 45.0%
GGTGTCCTTACCAAAAATGG+TGG - chr1_2:8256862-8256881 Msa0053760:CDS 45.0%
ATGGTGGTAACCGACAAGTT+TGG - chr1_2:8256878-8256897 Msa0053760:CDS 45.0%
TGGTGGTAACCGACAAGTTT+GGG - chr1_2:8256879-8256898 Msa0053760:CDS 45.0%
! GACTTGCCCATCAAGGGTAT+TGG - chr1_2:8254342-8254361 Msa0053760:CDS 50.0%
!! TGCCCATCAAGGGTATTGGA+CGG - chr1_2:8254346-8254365 Msa0053760:CDS 50.0%
GAACCGTCCAATACCCTTGA+TGG + chr1_2:8254352-8254371 None:intergenic 50.0%
!! AAGGGTATTGGACGGTTCTG+CGG - chr1_2:8254354-8254373 Msa0053760:CDS 50.0%
GGGGAACCTGAACATGACAT+TGG - chr1_2:8254487-8254506 Msa0053760:CDS 50.0%
!! GCAGTGATGAATTCTGGCTC+AGG - chr1_2:8254826-8254845 Msa0053760:CDS 50.0%
TAATTCAGCACGGGCAGACT+CGG - chr1_2:8254903-8254922 Msa0053760:CDS 50.0%
ATGCGAATGAGGAGGGATTG+GGG - chr1_2:8255499-8255518 Msa0053760:CDS 50.0%
!! AATTATTGGTGCCGCGGAAG+AGG - chr1_2:8255578-8255597 Msa0053760:CDS 50.0%
CCTTTCATACTCCTCTTCCG+CGG + chr1_2:8255592-8255611 None:intergenic 50.0%
! CGCGGAAGAGGAGTATGAAA+GGG - chr1_2:8255590-8255609 Msa0053760:CDS 50.0%
AATCCACCAGACCAGGTTCT+TGG + chr1_2:8255723-8255742 None:intergenic 50.0%
!! AGAACCTGGTCTGGTGGATT+TGG - chr1_2:8255723-8255742 Msa0053760:CDS 50.0%
ACTTCCAAATCCACCAGACC+AGG + chr1_2:8255730-8255749 None:intergenic 50.0%
! CTATGAGCGGAGGCTTTTTG+AGG - chr1_2:8255823-8255842 Msa0053760:CDS 50.0%
TCTGAAGAGGGAAGGACACA+TGG + chr1_2:8255850-8255869 None:intergenic 50.0%
TTGTGCGAGCCTCATCATTC+AGG - chr1_2:8255881-8255900 Msa0053760:CDS 50.0%
GGTGGTAACCGACAAGTTTG+GGG - chr1_2:8256880-8256899 Msa0053760:CDS 50.0%
ACGCAGTTCCCCAAACTTGT+CGG + chr1_2:8256891-8256910 None:intergenic 50.0%
ACTGCGTCTCAGCAACAATC+CGG - chr1_2:8256904-8256923 Msa0053760:CDS 50.0%
!! TTGCGTTGGTTGCTTTCCAG+TGG - chr1_2:8256928-8256947 Msa0053760:exon 50.0%
GCAGACTCGGAGTCATCTCA+AGG - chr1_2:8254916-8254935 Msa0053760:CDS 55.0%
! CCGCGGAAGAGGAGTATGAA+AGG - chr1_2:8255589-8255608 Msa0053760:CDS 55.0%
TCTCCAAGAACCTGGTCTGG+TGG - chr1_2:8255717-8255736 Msa0053760:CDS 55.0%
CCAAGCCCTTCACCAATCGA+AGG + chr1_2:8255789-8255808 None:intergenic 55.0%
CCTTCGATTGGTGAAGGGCT+TGG - chr1_2:8255786-8255805 Msa0053760:CDS 55.0%
! GAGGCACCATCATGCATTCG+TGG - chr1_2:8256412-8256431 Msa0053760:CDS 55.0%
CTGCGTCTCAGCAACAATCC+GGG - chr1_2:8256905-8256924 Msa0053760:CDS 55.0%
AGCAACAATCCGGGTTGCGT+TGG - chr1_2:8256914-8256933 Msa0053760:CDS 55.0%
GGAAAGCAACCAACGCAACC+CGG + chr1_2:8256926-8256945 None:intergenic 55.0%
TATGGTGGTCGCGTCGTGTC+TGG - chr1_2:8254412-8254431 Msa0053760:CDS 60.0%
! TCGGCCGACTCAGAATGACG+TGG - chr1_2:8254789-8254808 Msa0053760:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8253550 8257317 8253550 ID=Msa0053760;Name=Msa0053760
chr1_2 mRNA 8253550 8257317 8253550 ID=Msa0053760-mRNA-1;Parent=Msa0053760;Name=Msa0053760-mRNA-1;_AED=0.00;_eAED=0.00;_QI=382|1|1|1|1|1|2|189|1016
chr1_2 exon 8253550 8254627 8253550 ID=Msa0053760-mRNA-1:exon:2947;Parent=Msa0053760-mRNA-1
chr1_2 exon 8254774 8257317 8254774 ID=Msa0053760-mRNA-1:exon:2946;Parent=Msa0053760-mRNA-1
chr1_2 five_prime_UTR 8256936 8257317 8256936 ID=Msa0053760-mRNA-1:five_prime_utr;Parent=Msa0053760-mRNA-1
chr1_2 CDS 8254774 8256935 8254774 ID=Msa0053760-mRNA-1:cds;Parent=Msa0053760-mRNA-1
chr1_2 CDS 8253739 8254627 8253739 ID=Msa0053760-mRNA-1:cds;Parent=Msa0053760-mRNA-1
chr1_2 three_prime_UTR 8253550 8253738 8253550 ID=Msa0053760-mRNA-1:three_prime_utr;Parent=Msa0053760-mRNA-1
Gene Sequence

>Msa0053760

ATGATGATGAAACCAAACTTTGAGTCTGAAAATAAAGATGTTGGTGAAACTGAAACTGATTCAAATATTGGTCATGAACAATTACTTCGTGACATTGAAGAATTAAGCAAAGCTCTTTACTTGGACAATACCCCTTTTAAGCCTTCTACCATCTCTGCTGAAAAAGACCGTTTGTCAAAATCTCAACTTAACTCAAACCCGAGATTTGTAAGTGAGGATCTGTTGATAGGGGACAAGAAATTGTCTTCAAAATGGAATTGGAAGAAGCCCTTGAAAGTTTTAACAAATATTGGTTCACAAAAGTTTGTTTGTTGCTTTAATCTTCATGTTCATTCGATTGAGGGACTTCCTTTGAGTTTCAATGGTGTTAGGTTAAGTGTGCATTGGAAAAGGAAAAACAGCATTTTGCAGACTTGCCCATCAAGGGTATTGGACGGTTCTGCGGAGTTTGATGAAACTTTGGTACATAGATGTTCGGTTTATGGTGGTCGCGTCGTGTCTGGTCGTTCTGTTAAGTATGAATCCAAGCGATTCTTGATTTATGCTTCTGTTGTTGGGGAACCTGAACATGACATTGGGAAACATCAGGTTGATCTCACTAGGCTTTTGCCACTGAGTTTAGAAGAGTTATGGGGTGATAAAAGTTCAGGGAAATGGAGTACAAGTTTTAGGTTGGTTGGAAAAGCTTTAGGAGCTAGATTAAATGTTAGTTTTGGTTATCAAGTAATGAAGGATGATTTAATGAGATTTGGTGCTAGTAATGGGAATGTTGTTAACCTTATTAACTTGAAGACAGATTCAAGCATCCCCGACAATGTTGCTTGTTTTAGTTCTAACAATAGGGATGTCGTAAAGCTTCGGCCGACTCAGAATGACGTGGTGTTATCGAATGAAGCAGTGATGAATTCTGGCTCAGGTTTTTCTAAATCAATCACTTTCCTATATCAAAAGCTTGATGAGGGGAACTTCAATAATTCAGCACGGGCAGACTCGGAGTCATCTCAAGGATCAAATCTATATGTGTCTGATGACACTGAATTTTCCATCAGTGAACAAGGGGTAGAAACATCTGAAGAGGATTCGTTCGAATTTGATCAAACAGGAATTCAAATAATTGACATGTCCACAGTTGAAATCATTAATGTGGATGAGATTATTAAGGATGATGACACGTTTGCTGACAATAACGCAAGATGTGATTCACTGGATACCGTATGTTCTAGGAATGTGAATGTGGATATGGCAGATAACAGCAAACATCGATTCAGTATTTCATGTGTCGATCTACCATCCATGAAGATTGAGGATTCAGTTTCCGAGACGTCAGAGTTTCTTGACCAAGAAGAACACTACTTAAGTGTTAAATCAAATTATAAAGCACATAAAAAGCCACATAGCTTGGATGATGTCATCGACTCTGTCGCGAGTGATTTCTTAAAGACGCTGGCATTGGAGAGTGATTCATTTCGCTCAAGCTGTGACGGTGATCCCATGTCTCCTAGAGAGAAGCTTTTAAGACAGTTTGAAAATGAGGCTCTAGCTTCAGGCAACTTCGCTTTTGATTTTAATGCGAATGAGGAGGGATTGGGGCAATATACACTTGAACATAACTATGAGGATTATGACGTGGATTCTGATTTATCTTTAATTATTGGTGCCGCGGAAGAGGAGTATGAAAGGGAAAATCAATCATTAATGCAGAGAAGGAAGGCCAAAATTCTTGAAGATCTTGAGACTGATAAATTAATGCAACAATGGGGTTTAGATGAGAGGGACTTTGAAAATTCTCCAAGAACCTGGTCTGGTGGATTTGGAAGTCCAATTGAAATATCCGATGAAGAACCGTCCATATTACCTTCGATTGGTGAAGGGCTTGGTTCGTTTGTTCAAACTATGAGCGGAGGCTTTTTGAGGTCCATGTGTCCTTCCCTCTTCAGAAATGCTAAGAATTGTGCGAGCCTCATCATTCAGGCTTCTAATCCAGTCGTTCTACCTGCAAAAATAGGTAACGATATATTGGATATACTTCTGTACATGGCATCTGCTAGAGTTGAAGAGCTGTGCAATTATATCTCTAAATCGATGCCTTTGCTAGATATCACTGGAAAATCCATTAAGCATATTGTGTCGGATGCTAAGACTAACAAGGAAGCTTCTGGAAGGAAGGGATCATGGCAGCATGATTTGTTTGAAGAATTTCCATGTAGTTATTTAACAGATAAAGACAAATGCTTGGACTCTTTGTCTCTAGAAGCTATAGCTCCTATGACTATTAACAAGATTGAATCTCTTTTAATAGAAGGGTTGAGAATTCAGTCTAGCATGTCAAATGAAGAGGCACCATCATGCATTCGTGGAGAAATCAACGACGATCTTGATGGTTTGATGGATCTGTCAGTAACGTTGGATCAATGGTTGAGACTTGATTCTGGCATCATCCAAGGAGAACATAATTTGGAACAAATTTTGAAGATTCTTAAAGCACACAATTCTAAAATCACAGAATTATATAATGATGGGTTGGGAAATGGCACTGATAAGGTGAAAATAGATGGCAGAAAGCGCAGTTATTTGGGAGAGCACATAACAGTGGCTTTTATGATCCAGCACAGAGATCCTCTAAGAAATTATGAACCAGTTGGAGTTCCAATACTGGTTTTAGCTCAGGCAGAAAGAGTTGACATACATGAAATGGAGAAAGACTGCGACAATTTTGTTGAGAATGAAGATATAGATAAAGAACCACCTCAATCTAGATTCAAAATCAAGGAGATTCATATTGCAGGTGTCCTTACCAAAAATGGTGGTAACCGACAAGTTTGGGGAACTGCGTCTCAGCAACAATCCGGGTTGCGTTGGTTGCTTTCCAGTGGCATGTGTAATATTGTCAAACACTCTTCTTCAAAATCAAAGTCGATTGTTGTTAGATCATCTTCACTGTTTACCAACAAATTGTTGAATCAAGATATCTTGTGGAGCATCTCTTGTGTTGATAGTAACATAGAGACTAATGCACACATTAGGAATCCTGATATCATGTTCCCAAAGTGA

Protein sequence

>Msa0053760

MMMKPNFESENKDVGETETDSNIGHEQLLRDIEELSKALYLDNTPFKPSTISAEKDRLSKSQLNSNPRFVSEDLLIGDKKLSSKWNWKKPLKVLTNIGSQKFVCCFNLHVHSIEGLPLSFNGVRLSVHWKRKNSILQTCPSRVLDGSAEFDETLVHRCSVYGGRVVSGRSVKYESKRFLIYASVVGEPEHDIGKHQVDLTRLLPLSLEELWGDKSSGKWSTSFRLVGKALGARLNVSFGYQVMKDDLMRFGASNGNVVNLINLKTDSSIPDNVACFSSNNRDVVKLRPTQNDVVLSNEAVMNSGSGFSKSITFLYQKLDEGNFNNSARADSESSQGSNLYVSDDTEFSISEQGVETSEEDSFEFDQTGIQIIDMSTVEIINVDEIIKDDDTFADNNARCDSLDTVCSRNVNVDMADNSKHRFSISCVDLPSMKIEDSVSETSEFLDQEEHYLSVKSNYKAHKKPHSLDDVIDSVASDFLKTLALESDSFRSSCDGDPMSPREKLLRQFENEALASGNFAFDFNANEEGLGQYTLEHNYEDYDVDSDLSLIIGAAEEEYERENQSLMQRRKAKILEDLETDKLMQQWGLDERDFENSPRTWSGGFGSPIEISDEEPSILPSIGEGLGSFVQTMSGGFLRSMCPSLFRNAKNCASLIIQASNPVVLPAKIGNDILDILLYMASARVEELCNYISKSMPLLDITGKSIKHIVSDAKTNKEASGRKGSWQHDLFEEFPCSYLTDKDKCLDSLSLEAIAPMTINKIESLLIEGLRIQSSMSNEEAPSCIRGEINDDLDGLMDLSVTLDQWLRLDSGIIQGEHNLEQILKILKAHNSKITELYNDGLGNGTDKVKIDGRKRSYLGEHITVAFMIQHRDPLRNYEPVGVPILVLAQAERVDIHEMEKDCDNFVENEDIDKEPPQSRFKIKEIHIAGVLTKNGGNRQVWGTASQQQSGLRWLLSSGMCNIVKHSSSKSKSIVVRSSSLFTNKLLNQDILWSISCVDSNIETNAHIRNPDIMFPK*