AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097970 MtrunA17_Chr1g0146431 93.445 595 17 5 1 594 1 574 0.0 1113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097970 AT2G25870.1 71.881 505 124 1 90 594 98 584 0.0 719
Msa0097970 AT5G38747.1 57.627 59 22 1 401 459 73 128 2.12e-14 71.2

Find 167 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGCTTGTTACATCTTT+TGG 0.104044 1_3:-3863842 Msa0097970:CDS
CATATGTTTCATATATTAAA+AGG 0.112234 1_3:+3859143 None:intergenic
CCAGCAATTGCAACCATTTC+GGG 0.172046 1_3:-3865813 Msa0097970:CDS
AGATCATTTATCATTTCTTT+TGG 0.183526 1_3:+3866156 None:intergenic
TTCCAGGGATTGCTTGTTTA+TGG 0.209459 1_3:-3861670 Msa0097970:intron
TGTCATTTATTTGTCATTAT+TGG 0.217372 1_3:-3859228 Msa0097970:three_prime_UTR
CAACAAGTGGATCATGAAAA+AGG 0.221799 1_3:+3861048 None:intergenic
AAACTTTCTTCGATGCAAAT+AGG 0.237939 1_3:+3865695 None:intergenic
CCCTTCTGTTGAAGATCTTC+TGG 0.243748 1_3:-3860898 Msa0097970:CDS
CCCGAAATGGTTGCAATTGC+TGG 0.248358 1_3:+3865813 None:intergenic
ACCAGCAATTGCAACCATTT+CGG 0.249025 1_3:-3865814 Msa0097970:CDS
AGGAAAAGTATTGGATTGTT+TGG 0.271230 1_3:-3862000 Msa0097970:CDS
GCAATGTTGCTTTCGTTTCT+CGG 0.271933 1_3:+3866068 None:intergenic
TGGCTGTAACTCATTCATTA+AGG 0.281685 1_3:-3859208 Msa0097970:three_prime_UTR
AATTACCATCTGAACTGTTT+TGG 0.282851 1_3:+3863683 None:intergenic
GCAGGCATGTCTTTACTCTT+TGG 0.308750 1_3:-3861117 Msa0097970:intron
AAGTAACTAACCAAGATTTC+AGG 0.308843 1_3:+3865662 None:intergenic
ATGAAGAAGAAGGAGATTAT+TGG 0.322481 1_3:+3866013 None:intergenic
ATGCTTGAGCTGGCTTCTTT+AGG 0.329248 1_3:-3859486 Msa0097970:CDS
CAGCTATATCTTCTGTGATA+TGG 0.329588 1_3:-3863478 Msa0097970:CDS
AACTCCTTCTTCTTCCTCTT+CGG 0.352512 1_3:+3865731 None:intergenic
TCTTTACTCTTTGGAGAGTA+AGG 0.360636 1_3:-3861108 Msa0097970:CDS
TGAAGAGGCTGAAGTAGAAA+TGG 0.361449 1_3:-3863800 Msa0097970:CDS
GGAAAAGTATTGGATTGTTT+GGG 0.362912 1_3:-3861999 Msa0097970:CDS
TTGGTTCGTGGTATATTGTA+TGG 0.364756 1_3:+3861018 None:intergenic
GCCCGATGATCCTGAAATCT+TGG 0.370855 1_3:-3865672 Msa0097970:intron
GTCAACAAGTTATATACATT+TGG 0.380037 1_3:+3858961 None:intergenic
CCTTTATTTGCAGCTTATGT+TGG 0.380058 1_3:-3864521 Msa0097970:intron
TGTCCCAATGGCAATGAAAC+TGG 0.386115 1_3:-3864841 Msa0097970:CDS
GTTGTTGAATGCGACGGAAT+AGG 0.387795 1_3:+3865901 None:intergenic
AACTTTCTTCGATGCAAATA+GGG 0.388826 1_3:+3865696 None:intergenic
CTTTATTTGCAGCTTATGTT+GGG 0.398548 1_3:-3864520 Msa0097970:intron
ATATGTTTCATATATTAAAA+GGG 0.399604 1_3:+3859144 None:intergenic
TGAAGGGAGGGTGGCGGAGA+AGG 0.413952 1_3:+3865972 None:intergenic
AAACATATGATAGAAAATTC+AGG 0.417509 1_3:-3859129 Msa0097970:three_prime_UTR
TCTTCTTCCTCTTCGGCGTT+CGG 0.418770 1_3:+3865738 None:intergenic
GACAAGGTCGGGAAATATAT+AGG 0.421336 1_3:-3861645 Msa0097970:CDS
AAAAGAAATGATAAATGATC+TGG 0.428380 1_3:-3866154 Msa0097970:five_prime_UTR
TTATTATCTATCATGTTAAA+CGG 0.430988 1_3:+3859078 None:intergenic
TGATAGATAATAACCCTTGT+TGG 0.432684 1_3:-3859068 Msa0097970:three_prime_UTR
CTGGCATTTGATGGTTTGAA+AGG 0.435654 1_3:-3864822 Msa0097970:CDS
AAAGCTGTGGCAAACGCAAT+TGG 0.436884 1_3:-3859432 Msa0097970:CDS
TTTGTTGCATCTGACCAGTA+TGG 0.437315 1_3:+3860431 None:intergenic
AAAAGTGCTGCTTGATCACT+TGG 0.439349 1_3:-3860330 Msa0097970:CDS
GGTACAATTTCCAGCATGTC+TGG 0.440193 1_3:+3860380 None:intergenic
TTTAAGAAGGTGGATTTAGC+TGG 0.441156 1_3:-3863071 Msa0097970:CDS
CAGAAGATATAGCTGAACTT+TGG 0.444755 1_3:+3863486 None:intergenic
AATTGCGTTTGCCACAGCTT+TGG 0.449220 1_3:+3859434 None:intergenic
GATAGATAATAACCCTTGTT+GGG 0.450297 1_3:-3859067 Msa0097970:three_prime_UTR
CTTTCGTTTCTCGGCTTAGC+GGG 0.450522 1_3:+3866077 None:intergenic
AACTTACACCTCTGTAGAAA+GGG 0.453153 1_3:+3859325 None:intergenic
CATGCTGGAAATTGTACCCT+TGG 0.454073 1_3:-3860375 Msa0097970:CDS
TCTGGCATCTGCTGACATAC+AGG 0.454582 1_3:-3860880 Msa0097970:intron
AATGCCAGTTTCATTGCCAT+TGG 0.454647 1_3:+3864837 None:intergenic
TGTTTATGGTAGACAAGGTC+GGG 0.459418 1_3:-3861656 Msa0097970:CDS
CGGAATAGGAATGGGATTGA+GGG 0.461244 1_3:+3865915 None:intergenic
TTAGGCATTGCACTGAGTAA+TGG 0.461385 1_3:-3859468 Msa0097970:CDS
GCAATGAAACTGGCATTTGA+TGG 0.464043 1_3:-3864831 Msa0097970:CDS
TCCAACCAAGACTTTGCAAA+AGG 0.464603 1_3:+3863761 None:intergenic
AGTCTTGGTTGGAAAGGAAA+AGG 0.470726 1_3:-3863751 Msa0097970:CDS
AATGAGGCACCTTTGGTTCG+TGG 0.470950 1_3:+3861006 None:intergenic
GCAAGACAAGCAGAGGAAAG+AGG 0.471221 1_3:-3864469 Msa0097970:CDS
GAAGAAGGAGATTATTGGAA+TGG 0.474525 1_3:+3866018 None:intergenic
CAACTTACACCTCTGTAGAA+AGG 0.477937 1_3:+3859324 None:intergenic
TGGAGTTGAAGGGAGGGTGG+CGG 0.479417 1_3:+3865966 None:intergenic
ATGCCAGTTTCATTGCCATT+GGG 0.481316 1_3:+3864838 None:intergenic
TCAGAATGCATATCGATAGA+TGG 0.486146 1_3:+3859377 None:intergenic
TACCCTTGGGAACATGTAAA+GGG 0.486391 1_3:-3860361 Msa0097970:CDS
GTACCCTTGGGAACATGTAA+AGG 0.489992 1_3:-3860362 Msa0097970:CDS
CTCTCTCTTTCCTCCTCCGT+CGG 0.491250 1_3:+3865778 None:intergenic
ACCAAGATTTCAGGATCATC+GGG 0.495844 1_3:+3865671 None:intergenic
CAAGACAAGCAGAGGAAAGA+GGG 0.496208 1_3:-3864468 Msa0097970:CDS
TTGTTTGGCAGGAAAAGTAT+TGG 0.496289 1_3:-3862009 Msa0097970:intron
ACGGAATAGGAATGGGATTG+AGG 0.497725 1_3:+3865914 None:intergenic
GCTGCACGTATTCCCCGAAA+TGG 0.504722 1_3:+3865800 None:intergenic
AACCAAGATTTCAGGATCAT+CGG 0.508129 1_3:+3865670 None:intergenic
TGAGGCCTCTCTCAAAGCCT+TGG 0.508435 1_3:+3863329 None:intergenic
GATATGCAGATAATGGCTAT+TGG 0.510832 1_3:-3859531 Msa0097970:intron
GTGGATTTAGCTGGAAAAGA+TGG 0.511679 1_3:-3863062 Msa0097970:CDS
ATTACCTCTCGACAGACGTC+CGG 0.513505 1_3:+3861610 None:intergenic
TTGCAAAGTCTTGGTTGGAA+AGG 0.513697 1_3:-3863757 Msa0097970:CDS
GGTTTAAGCAACGATGAAGA+TGG 0.514129 1_3:-3859411 Msa0097970:CDS
ATATAGGAGCAGCTTAGATC+CGG 0.515316 1_3:-3861629 Msa0097970:CDS
CGGATACATTACGTCCATAC+TGG 0.518060 1_3:-3860445 Msa0097970:CDS
TCAGAAGCCGAACGCCGAAG+AGG 0.519206 1_3:-3865745 Msa0097970:CDS
TTTCGCGAAGGAAAATGAAT+GGG 0.521861 1_3:+3859276 None:intergenic
CTTGGGAGTTACTGCTAATG+AGG 0.523463 1_3:-3860312 Msa0097970:intron
GTCAAAGACAGGAAGAAAGA+AGG 0.523896 1_3:-3863528 Msa0097970:intron
GTCTTGGTTGGAAAGGAAAA+GGG 0.525732 1_3:-3863750 Msa0097970:CDS
CTGCTATAGATGATGTTGGC+AGG 0.526203 1_3:-3864776 Msa0097970:CDS
TTTGAGAGAGGCCTCAGCAA+GGG 0.528767 1_3:-3863322 Msa0097970:CDS
ACGCGGAAGCATGAAGAAGA+AGG 0.529349 1_3:+3866003 None:intergenic
GGGAACAATGCTTTGAGCAG+TGG 0.533362 1_3:-3861979 Msa0097970:CDS
GGAATGGAAGCTATTGCCTA+TGG 0.533480 1_3:+3866034 None:intergenic
CGGCTTAGCGGGAGATGCAA+TGG 0.536046 1_3:+3866088 None:intergenic
GTGAAAATTGTGATAGCCAC+TGG 0.536129 1_3:-3863297 Msa0097970:CDS
ATACGTGCAGCCGACGGAGG+AGG 0.536167 1_3:-3865788 Msa0097970:CDS
GTTCCCTTTACATGTTCCCA+AGG 0.536704 1_3:+3860358 None:intergenic
CCTTCACAAAATGCAATAAG+TGG 0.536888 1_3:+3861083 None:intergenic
TACTGGTCAGATGCAACAAA+AGG 0.539035 1_3:-3860428 Msa0097970:CDS
AATTTCTACTTCAACTGCCA+AGG 0.539368 1_3:-3863346 Msa0097970:CDS
TGATGAGATCCGTATCCTCA+TGG 0.539656 1_3:-3864434 Msa0097970:intron
TCAAGCTGTACCAGACATGC+TGG 0.541670 1_3:-3860390 Msa0097970:CDS
TAAAACCAACCATGAGGATA+CGG 0.541816 1_3:+3864425 None:intergenic
GAATGCGACGGAATAGGAAT+GGG 0.544042 1_3:+3865907 None:intergenic
ATGCTGGAAATTGTACCCTT+GGG 0.548664 1_3:-3860374 Msa0097970:CDS
GTAATGTATCCGACACACTC+TGG 0.552692 1_3:+3860456 None:intergenic
TGAATGCGACGGAATAGGAA+TGG 0.553354 1_3:+3865906 None:intergenic
GCCAGAAGATCTTCAACAGA+AGG 0.554050 1_3:+3860897 None:intergenic
TTGTTTATGGTAGACAAGGT+CGG 0.557920 1_3:-3861657 Msa0097970:CDS
CCAAAAGATGTAACAAGCCA+TGG 0.561789 1_3:+3863842 None:intergenic
AACTGCCAAGGCTTTGAGAG+AGG 0.562759 1_3:-3863334 Msa0097970:CDS
TGATCATGAATTAAGTGAAG+AGG 0.564233 1_3:-3863815 Msa0097970:CDS
TAATGTATCCGACACACTCT+GGG 0.564410 1_3:+3860457 None:intergenic
GCTTTCGTTTCTCGGCTTAG+CGG 0.567166 1_3:+3866076 None:intergenic
ACGTGACATGATGGAGTTGA+AGG 0.567631 1_3:+3865955 None:intergenic
TCAATGTCACAACATGAACC+TGG 0.570480 1_3:-3864654 Msa0097970:CDS
GATACTGCTATAGATGATGT+TGG 0.571424 1_3:-3864780 Msa0097970:CDS
TTGAGAGAGGCCTCAGCAAG+GGG 0.575910 1_3:-3863321 Msa0097970:CDS
TATGTTTCATATATTAAAAG+GGG 0.578053 1_3:+3859145 None:intergenic
GAGGAGGAAAGAGAGAGTAT+CGG 0.580158 1_3:-3865772 Msa0097970:CDS
TCCCACCAAAACAGTTCAGA+TGG 0.584076 1_3:-3863688 Msa0097970:intron
ATTGCATTCCCTTTCTACAG+AGG 0.586020 1_3:-3859333 Msa0097970:three_prime_UTR
TATATCTTCTGTGATATGGA+TGG 0.587040 1_3:-3863474 Msa0097970:intron
AACGCCGAAGAGGAAGAAGA+AGG 0.587913 1_3:-3865735 Msa0097970:CDS
TTCCCTTTACATGTTCCCAA+GGG 0.592459 1_3:+3860359 None:intergenic
ACAATAGGAAGATTGAGTCC+AGG 0.593719 1_3:+3864636 None:intergenic
AGTAGAAATGGAGAAAGAAG+AGG 0.597908 1_3:-3863788 Msa0097970:CDS
TATGCATTCTGAGCAGCTGA+AGG 0.600572 1_3:-3859366 Msa0097970:exon
GACAGCAGCAAGACAAGCAG+AGG 0.601250 1_3:-3864476 Msa0097970:CDS
TGATGTAGAGATGCTTGAGC+TGG 0.601463 1_3:-3859496 Msa0097970:CDS
CGGGGAATACGTGCAGCCGA+CGG 0.602788 1_3:-3865794 Msa0097970:CDS
AACGAAAGCAACATTGCTGA+AGG 0.603225 1_3:-3866062 Msa0097970:five_prime_UTR
CTTTGAGAGAGGCCTCAGCA+AGG 0.603249 1_3:-3863323 Msa0097970:CDS
CAGATAATGGCTATTGGTGA+TGG 0.605598 1_3:-3859525 Msa0097970:CDS
TACAATATACCACGAACCAA+AGG 0.605692 1_3:-3861015 Msa0097970:intron
CTCATCATTACAAAGAAGCA+CGG 0.607621 1_3:+3864734 None:intergenic
TTGCTTGTTTATGGTAGACA+AGG 0.609418 1_3:-3861661 Msa0097970:CDS
GGAGGACGAGAGTTACAGAA+AGG 0.611833 1_3:+3865866 None:intergenic
CGTGATGGCACGTGACATGA+TGG 0.615587 1_3:+3865946 None:intergenic
GGAATACGTGCAGCCGACGG+AGG 0.618353 1_3:-3865791 Msa0097970:CDS
TGCATATCGATAGATGGCGT+CGG 0.621958 1_3:+3859383 None:intergenic
TGATGGAGTTGAAGGGAGGG+TGG 0.624136 1_3:+3865963 None:intergenic
ATTGCTGAAGGATTAGCCAT+AGG 0.624909 1_3:-3866050 Msa0097970:five_prime_UTR
AGATCCGGACGTCTGTCGAG+AGG 0.628487 1_3:-3861614 Msa0097970:intron
GCAAAAGAGACACGGCGAGG+AGG 0.631006 1_3:+3865848 None:intergenic
TTGAGGGAGAGAGCACGTGA+TGG 0.631396 1_3:+3865931 None:intergenic
GGCGGCGTTGTTGAATGCGA+CGG 0.632867 1_3:+3865895 None:intergenic
CCAGAAGATCTTCAACAGAA+GGG 0.634354 1_3:+3860898 None:intergenic
CGTGACATGATGGAGTTGAA+GGG 0.634360 1_3:+3865956 None:intergenic
GCTTCGTCTAAATGTCCCAA+TGG 0.644543 1_3:-3864853 Msa0097970:CDS
TTGGGAACATGTAAAGGGAA+CGG 0.644997 1_3:-3860356 Msa0097970:CDS
AAATTGTAATGATCCCAACA+AGG 0.649143 1_3:+3859054 None:intergenic
GTATGGAGTGAATCAACAAG+TGG 0.650294 1_3:+3861035 None:intergenic
ACATGATGGAGTTGAAGGGA+GGG 0.652932 1_3:+3865960 None:intergenic
CAGCAATTGCAACCATTTCG+GGG 0.658853 1_3:-3865812 Msa0097970:CDS
AATTGTAATGATCCCAACAA+GGG 0.659740 1_3:+3859055 None:intergenic
AGACACTGCCCAGAGTGTGT+CGG 0.664859 1_3:-3860465 Msa0097970:CDS
ATCAGAGAAGACCAAAGCTG+TGG 0.670500 1_3:-3859445 Msa0097970:CDS
TGAAAAGCGCAAAAGAGACA+CGG 0.674363 1_3:+3865840 None:intergenic
GACATGATGGAGTTGAAGGG+AGG 0.677433 1_3:+3865959 None:intergenic
AGCGCAAAAGAGACACGGCG+AGG 0.682613 1_3:+3865845 None:intergenic
CGGAGAAGGTTAGAGAAACG+CGG 0.687115 1_3:+3865986 None:intergenic
AAAGTGCTGCTTGATCACTT+GGG 0.694800 1_3:-3860329 Msa0097970:CDS
TGGTACAGCTTGAACAACAG+TGG 0.699418 1_3:+3860400 None:intergenic
AGAGTTACAGAAAGGAACGA+CGG 0.736220 1_3:+3865874 None:intergenic
GTTACAGAAAGGAACGACGG+CGG 0.740877 1_3:+3865877 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAATATAAATATAT+AGG - chr1_3:3862797-3862816 Msa0097970:intron 0.0%
!!! TATTTTATTCATTCTTTTTT+GGG - chr1_3:3860204-3860223 Msa0097970:intron 10.0%
!! TTCAATTAAAAACAAAAAAA+AGG + chr1_3:3861708-3861727 None:intergenic 10.0%
!! AAGAAAAATATAATAAAACA+AGG + chr1_3:3862454-3862473 None:intergenic 10.0%
!! TTTACAAATAAAGTAATTAA+AGG - chr1_3:3862905-3862924 Msa0097970:intron 10.0%
!! TATAAATTATACTATAATTG+AGG + chr1_3:3864287-3864306 None:intergenic 10.0%
!! AGAAAAAAAAAATAATTCTA+AGG + chr1_3:3864412-3864431 None:intergenic 10.0%
!! ATATGTTTCATATATTAAAA+GGG + chr1_3:3865975-3865994 None:intergenic 10.0%
!! AAGATACAATTATATTATGT+TGG - chr1_3:3859800-3859819 Msa0097970:intron 15.0%
!!! CTATTTTATTCATTCTTTTT+TGG - chr1_3:3860203-3860222 Msa0097970:intron 15.0%
!!! TTATTTTCATTAACAAAAGT+TGG - chr1_3:3860835-3860854 Msa0097970:intron 15.0%
!! GAAATTAAAAGTTAAAGTAA+CGG - chr1_3:3860937-3860956 Msa0097970:intron 15.0%
!! AAAAACAAAAAAAAGGATAA+TGG + chr1_3:3861701-3861720 None:intergenic 15.0%
!! AAAATAAATAGCTTAAAACA+TGG + chr1_3:3861883-3861902 None:intergenic 15.0%
!!! CAATTTTTCTAATATAAATG+TGG - chr1_3:3861943-3861962 Msa0097970:intron 15.0%
!!! TTAAGTATCATATATCTTTT+TGG - chr1_3:3863216-3863235 Msa0097970:intron 15.0%
!! TTTCAGAATATATATACTTT+AGG + chr1_3:3863917-3863936 None:intergenic 15.0%
!! TTATTATGTTAACTCAAATA+TGG + chr1_3:3864930-3864949 None:intergenic 15.0%
!!! TAAAATTGATGTCATATTTT+AGG + chr1_3:3865338-3865357 None:intergenic 15.0%
!! TATGTTTCATATATTAAAAG+GGG + chr1_3:3865974-3865993 None:intergenic 15.0%
!! CATATGTTTCATATATTAAA+AGG + chr1_3:3865976-3865995 None:intergenic 15.0%
!! TTATTATCTATCATGTTAAA+CGG + chr1_3:3866041-3866060 None:intergenic 15.0%
!!! AGATCATTTATCATTTCTTT+TGG + chr1_3:3858963-3858982 None:intergenic 20.0%
!! AAAAGAAATGATAAATGATC+TGG - chr1_3:3858962-3858981 Msa0097970:three_prime_UTR 20.0%
!! TAGTAATCAAACGATTATTT+AGG - chr1_3:3859552-3859571 Msa0097970:intron 20.0%
!!! ATTAATTTGAAGCTTGAAAT+AGG - chr1_3:3860046-3860065 Msa0097970:intron 20.0%
!!! TTAATTTGAAGCTTGAAATA+GGG - chr1_3:3860047-3860066 Msa0097970:intron 20.0%
!! GTTTATACAAAAACTTAACA+AGG - chr1_3:3860404-3860423 Msa0097970:CDS 20.0%
!!! TTAATTTCTCTCTTTTGAAA+TGG + chr1_3:3860925-3860944 None:intergenic 20.0%
!! CTGAAAAAAAGATTAAAATG+AGG + chr1_3:3861252-3861271 None:intergenic 20.0%
!!! CTCATTTTAATCTTTTTTTC+AGG - chr1_3:3861250-3861269 Msa0097970:intron 20.0%
!! CATTTGCACAAAAAAAATAT+GGG - chr1_3:3861541-3861560 Msa0097970:intron 20.0%
!! ATTTGCACAAAAAAAATATG+GGG - chr1_3:3861542-3861561 Msa0097970:intron 20.0%
!! TTGAATCCTGTATTATATAA+AGG - chr1_3:3861723-3861742 Msa0097970:intron 20.0%
!! AATGTTCCTTTATATAATAC+AGG + chr1_3:3861732-3861751 None:intergenic 20.0%
!! TATAAATGTGGATATTCATA+TGG - chr1_3:3861955-3861974 Msa0097970:intron 20.0%
!! TAATTTGAACATTGTGAATT+AGG - chr1_3:3861999-3862018 Msa0097970:CDS 20.0%
!!! TGTGATAGATATTTTTAAGA+AGG - chr1_3:3862032-3862051 Msa0097970:intron 20.0%
!! TATTTAACTATTACAGTCTT+TGG + chr1_3:3862693-3862712 None:intergenic 20.0%
!! AGATATATGATACTTAAAAG+CGG + chr1_3:3863213-3863232 None:intergenic 20.0%
!! TTGTTATGAAAAACTGAAAA+AGG + chr1_3:3863544-3863563 None:intergenic 20.0%
!!! TGTTTTTTGTTTTTCTCATT+GGG + chr1_3:3863792-3863811 None:intergenic 20.0%
!!! ATGTTTTTTGTTTTTCTCAT+TGG + chr1_3:3863793-3863812 None:intergenic 20.0%
!!! TTTTTGTTATGTAGAAAACT+GGG + chr1_3:3863863-3863882 None:intergenic 20.0%
!! TTAAGAGAAAAATACTTTAC+AGG - chr1_3:3864185-3864204 Msa0097970:intron 20.0%
!! AACTTGTATGTGATATTTAT+TGG + chr1_3:3864462-3864481 None:intergenic 20.0%
!!! GACATCAATTTTATTTTACA+AGG - chr1_3:3865345-3865364 Msa0097970:intron 20.0%
!! AATTTAGTCCTTGAAATATT+TGG + chr1_3:3865387-3865406 None:intergenic 20.0%
!! TGCATTGAATAAGATTATTT+AGG - chr1_3:3865500-3865519 Msa0097970:intron 20.0%
!! TATCTGCATATCATAAATTT+GGG + chr1_3:3865577-3865596 None:intergenic 20.0%
!! TTATCTGCATATCATAAATT+TGG + chr1_3:3865578-3865597 None:intergenic 20.0%
!! AATTTATGATATGCAGATAA+TGG - chr1_3:3865578-3865597 Msa0097970:intron 20.0%
!!! TGTCATTTATTTGTCATTAT+TGG - chr1_3:3865888-3865907 Msa0097970:CDS 20.0%
!! AAACATATGATAGAAAATTC+AGG - chr1_3:3865987-3866006 Msa0097970:CDS 20.0%
! GATAAATGATCTGGAAAAAT+TGG - chr1_3:3858971-3858990 Msa0097970:three_prime_UTR 25.0%
! TACAAAAACTTAACAAGGAA+TGG - chr1_3:3860409-3860428 Msa0097970:CDS 25.0%
! GAAAATGCAATTCTTACAAT+AGG + chr1_3:3860498-3860517 None:intergenic 25.0%
!! ACTTATGAATTATGATGATG+AGG + chr1_3:3860523-3860542 None:intergenic 25.0%
! ATACAAACTTGAAACTTAGA+TGG - chr1_3:3860543-3860562 Msa0097970:intron 25.0%
! ATATTATAAAACCAACCATG+AGG + chr1_3:3860700-3860719 None:intergenic 25.0%
! TGCACTTACTTACTAAATAA+TGG - chr1_3:3860977-3860996 Msa0097970:intron 25.0%
! CTCAAGTAGAAATAAATTGT+TGG - chr1_3:3861053-3861072 Msa0097970:CDS 25.0%
!! TTTCATTTTCTTCTACTTGT+GGG - chr1_3:3861115-3861134 Msa0097970:CDS 25.0%
!!! TATTTTTTTTGTGCAAATGG+AGG + chr1_3:3861540-3861559 None:intergenic 25.0%
!!! CCATATTTTTTTTGTGCAAA+TGG + chr1_3:3861543-3861562 None:intergenic 25.0%
! CCATTTGCACAAAAAAAATA+TGG - chr1_3:3861540-3861559 Msa0097970:intron 25.0%
! TTTGCACAAAAAAAATATGG+GGG - chr1_3:3861543-3861562 Msa0097970:intron 25.0%
! TTAAAAATATCTATCACAGC+TGG + chr1_3:3862030-3862049 None:intergenic 25.0%
!!! GATAGATATTTTTAAGAAGG+TGG - chr1_3:3862035-3862054 Msa0097970:intron 25.0%
! ATCCAAACAAATATCCTTTA+TGG + chr1_3:3862369-3862388 None:intergenic 25.0%
! TAATTAAAGGCTATGAATGA+AGG - chr1_3:3862918-3862937 Msa0097970:intron 25.0%
!! TATCAGAAACTACATTTTGT+TGG + chr1_3:3863338-3863357 None:intergenic 25.0%
! TATGAAAAACTGAAAAAGGA+GGG + chr1_3:3863540-3863559 None:intergenic 25.0%
! TTATGAAAAACTGAAAAAGG+AGG + chr1_3:3863541-3863560 None:intergenic 25.0%
! ATAATGTTTCATAAGCAATG+GGG + chr1_3:3863667-3863686 None:intergenic 25.0%
! CATAATGTTTCATAAGCAAT+GGG + chr1_3:3863668-3863687 None:intergenic 25.0%
! TGTAGTCAATGAACATAATA+TGG + chr1_3:3863742-3863761 None:intergenic 25.0%
!!! CTTTTTGTTATGTAGAAAAC+TGG + chr1_3:3863864-3863883 None:intergenic 25.0%
! TAGAATGTAAGCAATCATAT+AGG + chr1_3:3864144-3864163 None:intergenic 25.0%
! ATCTTGCTAACAATTACATT+TGG - chr1_3:3864606-3864625 Msa0097970:intron 25.0%
!! TTTTGTGATCATATTTCACA+CGG - chr1_3:3865020-3865039 Msa0097970:intron 25.0%
! AATATAAAGCAAACATCACA+AGG + chr1_3:3865274-3865293 None:intergenic 25.0%
! AACATGAACCAAATATTTCA+AGG - chr1_3:3865376-3865395 Msa0097970:intron 25.0%
! ATCTGCATATCATAAATTTG+GGG + chr1_3:3865576-3865595 None:intergenic 25.0%
!!! ATACCCCTGATTAATTTTTT+TGG - chr1_3:3865815-3865834 Msa0097970:CDS 25.0%
! GAACCAAAAAAATTAATCAG+GGG + chr1_3:3865821-3865840 None:intergenic 25.0%
! GGAACCAAAAAAATTAATCA+GGG + chr1_3:3865822-3865841 None:intergenic 25.0%
! GTCAACAAGTTATATACATT+TGG + chr1_3:3866158-3866177 None:intergenic 25.0%
ATGAAGAAGAAGGAGATTAT+TGG + chr1_3:3859106-3859125 None:intergenic 30.0%
AACTTTCTTCGATGCAAATA+GGG + chr1_3:3859423-3859442 None:intergenic 30.0%
AAACTTTCTTCGATGCAAAT+AGG + chr1_3:3859424-3859443 None:intergenic 30.0%
AAGTAACTAACCAAGATTTC+AGG + chr1_3:3859457-3859476 None:intergenic 30.0%
ACTACTAGAACTAATAGAGT+GGG + chr1_3:3859536-3859555 None:intergenic 30.0%
TACTACTAGAACTAATAGAG+TGG + chr1_3:3859537-3859556 None:intergenic 30.0%
GATAGAAATAATCACTGAAG+AGG - chr1_3:3859602-3859621 Msa0097970:intron 30.0%
ACCATCAATTTAGTCTCTAA+AGG - chr1_3:3859716-3859735 Msa0097970:intron 30.0%
! TCCTTTAGAGACTAAATTGA+TGG + chr1_3:3859720-3859739 None:intergenic 30.0%
!!! TTTTTTGATAGTCTCTACTC+TGG - chr1_3:3859846-3859865 Msa0097970:intron 30.0%
AAATGTTGTCCAGTTTCAAT+TGG - chr1_3:3859992-3860011 Msa0097970:intron 30.0%
TCATGAAATCCAATTGAAAC+TGG + chr1_3:3860004-3860023 None:intergenic 30.0%
TTCAATTGGATTTCATGATC+AGG - chr1_3:3860006-3860025 Msa0097970:intron 30.0%
AAGTCATGTGAAATAGTTTG+TGG - chr1_3:3860095-3860114 Msa0097970:intron 30.0%
! AGTCATGTGAAATAGTTTGT+GGG - chr1_3:3860096-3860115 Msa0097970:intron 30.0%
! TATGAATTATGATGATGAGG+TGG + chr1_3:3860520-3860539 None:intergenic 30.0%
! CTTTATTTGCAGCTTATGTT+GGG - chr1_3:3860596-3860615 Msa0097970:intron 30.0%
TAAGTGCATTTGAAAGTTCT+TGG + chr1_3:3860965-3860984 None:intergenic 30.0%
! GTTTCATTTTCTTCTACTTG+TGG - chr1_3:3861114-3861133 Msa0097970:CDS 30.0%
! TTCATTTTCTTCTACTTGTG+GGG - chr1_3:3861116-3861135 Msa0097970:CDS 30.0%
!!! TAATCTTTTTTTCAGGTCCA+TGG - chr1_3:3861257-3861276 Msa0097970:intron 30.0%
TGATCATGAATTAAGTGAAG+AGG - chr1_3:3861301-3861320 Msa0097970:intron 30.0%
! AATTACCATCTGAACTGTTT+TGG + chr1_3:3861436-3861455 None:intergenic 30.0%
GTAAAACCAAAATACCATAC+TGG + chr1_3:3861494-3861513 None:intergenic 30.0%
ATAGATGAATTGTCAAAGAC+AGG - chr1_3:3861577-3861596 Msa0097970:intron 30.0%
TATATCTTCTGTGATATGGA+TGG - chr1_3:3861642-3861661 Msa0097970:CDS 30.0%
ATGGTATTCTGACAAATCAT+GGG + chr1_3:3861864-3861883 None:intergenic 30.0%
! ATTGTTTCAGAATTTTCTCC+TGG - chr1_3:3862078-3862097 Msa0097970:intron 30.0%
! TTGTTTCAGAATTTTCTCCT+GGG - chr1_3:3862079-3862098 Msa0097970:intron 30.0%
GAGATATTCGATGACAATTA+TGG - chr1_3:3862343-3862362 Msa0097970:intron 30.0%
AGAAACAGAATAGAGTAAGA+TGG - chr1_3:3863027-3863046 Msa0097970:CDS 30.0%
!! AGGAAAAGTATTGGATTGTT+TGG - chr1_3:3863116-3863135 Msa0097970:intron 30.0%
!! GGAAAAGTATTGGATTGTTT+GGG - chr1_3:3863117-3863136 Msa0097970:intron 30.0%
TTGGAGATAACTTAATCTCT+TGG - chr1_3:3863235-3863254 Msa0097970:intron 30.0%
ATGATAGAAACTGTGATAGT+GGG + chr1_3:3863378-3863397 None:intergenic 30.0%
AATGATAGAAACTGTGATAG+TGG + chr1_3:3863379-3863398 None:intergenic 30.0%
AATAAAGTCCAAAACGACAA+AGG + chr1_3:3863601-3863620 None:intergenic 30.0%
CCATAATGTTTCATAAGCAA+TGG + chr1_3:3863669-3863688 None:intergenic 30.0%
CCATTGCTTATGAAACATTA+TGG - chr1_3:3863666-3863685 Msa0097970:intron 30.0%
GAACATAATATGGCTATTGA+GGG + chr1_3:3863732-3863751 None:intergenic 30.0%
TGAACATAATATGGCTATTG+AGG + chr1_3:3863733-3863752 None:intergenic 30.0%
! TGTTTTTCTCATTGGGTAAA+AGG + chr1_3:3863785-3863804 None:intergenic 30.0%
!!! TCTGAAATGTCATTTTTTGC+AGG - chr1_3:3863930-3863949 Msa0097970:intron 30.0%
AACAAGTGGATCATGAAAAA+GGG + chr1_3:3864070-3864089 None:intergenic 30.0%
TATTCACTGTTCTCTATTGA+AGG - chr1_3:3864322-3864341 Msa0097970:intron 30.0%
CAGTCAATACAAACTTGTAT+GGG + chr1_3:3864510-3864529 None:intergenic 30.0%
! TTTTATTGCAGTTGTCTTTG+AGG + chr1_3:3864541-3864560 None:intergenic 30.0%
GACAACAAAATAAATGTGTG+AGG + chr1_3:3864849-3864868 None:intergenic 30.0%
! TTGTCTTTTTCTCTCAAACT+CGG - chr1_3:3864864-3864883 Msa0097970:CDS 30.0%
TTGGTATCATACATATAGAG+TGG - chr1_3:3864902-3864921 Msa0097970:intron 30.0%
ATGATCACAAAATCATGTCA+TGG + chr1_3:3865012-3865031 None:intergenic 30.0%
ATGTAGTATGATTGCTAATG+AGG - chr1_3:3865119-3865138 Msa0097970:intron 30.0%
TCACACGTACATAAACTAAA+AGG + chr1_3:3865178-3865197 None:intergenic 30.0%
TCAAGGACTAAATTAGAACA+AGG - chr1_3:3865393-3865412 Msa0097970:intron 30.0%
AAATCCATCAATTGTGTTCA+TGG - chr1_3:3865449-3865468 Msa0097970:intron 30.0%
GGGAACCAAAAAAATTAATC+AGG + chr1_3:3865823-3865842 None:intergenic 30.0%
! TGCAATGTTTTCATGTCTAA+AGG - chr1_3:3865932-3865951 Msa0097970:CDS 30.0%
TGATAGATAATAACCCTTGT+TGG - chr1_3:3866048-3866067 Msa0097970:five_prime_UTR 30.0%
GATAGATAATAACCCTTGTT+GGG - chr1_3:3866049-3866068 Msa0097970:five_prime_UTR 30.0%
AATTGTAATGATCCCAACAA+GGG + chr1_3:3866064-3866083 None:intergenic 30.0%
AAATTGTAATGATCCCAACA+AGG + chr1_3:3866065-3866084 None:intergenic 30.0%
! GTTGGGATCATTACAATTTT+TGG - chr1_3:3866066-3866085 Msa0097970:five_prime_UTR 30.0%
GAAGAAGGAGATTATTGGAA+TGG + chr1_3:3859101-3859120 None:intergenic 35.0%
AACCAAGATTTCAGGATCAT+CGG + chr1_3:3859449-3859468 None:intergenic 35.0%
TGATAGTTCCCATATGAAGA+GGG - chr1_3:3859648-3859667 Msa0097970:intron 35.0%
!!! CAAGAATTCCTGTTTTGATC+CGG - chr1_3:3859909-3859928 Msa0097970:intron 35.0%
CAAAACATGTAGCAAGTAAC+CGG + chr1_3:3859931-3859950 None:intergenic 35.0%
! AATAGTTTGTGGGAACTTCA+TGG - chr1_3:3860106-3860125 Msa0097970:intron 35.0%
GATACTGCTATAGATGATGT+TGG - chr1_3:3860336-3860355 Msa0097970:CDS 35.0%
CTCATCATTACAAAGAAGCA+CGG + chr1_3:3860385-3860404 None:intergenic 35.0%
AAAGGAATTCATCAAGCACT+TGG + chr1_3:3860580-3860599 None:intergenic 35.0%
CCAACATAAGCTGCAAATAA+AGG + chr1_3:3860598-3860617 None:intergenic 35.0%
! CCTTTATTTGCAGCTTATGT+TGG - chr1_3:3860595-3860614 Msa0097970:intron 35.0%
TAAAACCAACCATGAGGATA+CGG + chr1_3:3860694-3860713 None:intergenic 35.0%
TTGTGTTACACTTCTGCAAA+AGG - chr1_3:3860759-3860778 Msa0097970:intron 35.0%
GTTGAAGCTTGAGATACAAA+AGG - chr1_3:3861075-3861094 Msa0097970:CDS 35.0%
!!! CATGGCTTGTTACATCTTTT+GGG - chr1_3:3861275-3861294 Msa0097970:intron 35.0%
AGTAGAAATGGAGAAAGAAG+AGG - chr1_3:3861328-3861347 Msa0097970:intron 35.0%
! TGTGAACCAGTATGGTATTT+TGG - chr1_3:3861485-3861504 Msa0097970:intron 35.0%
CAGAAGATATAGCTGAACTT+TGG + chr1_3:3861633-3861652 None:intergenic 35.0%
CAGCTATATCTTCTGTGATA+TGG - chr1_3:3861638-3861657 Msa0097970:CDS 35.0%
AATTTCTACTTCAACTGCCA+AGG - chr1_3:3861770-3861789 Msa0097970:intron 35.0%
!! ACAACATCTTACTTTTCCAG+TGG + chr1_3:3861838-3861857 None:intergenic 35.0%
CATGGTATTCTGACAAATCA+TGG + chr1_3:3861865-3861884 None:intergenic 35.0%
! TTTAAGAAGGTGGATTTAGC+TGG - chr1_3:3862045-3862064 Msa0097970:intron 35.0%
! TGTTTCAGAATTTTCTCCTG+GGG - chr1_3:3862080-3862099 Msa0097970:intron 35.0%
ATTACCTGTAAAAAAACCCC+AGG + chr1_3:3862099-3862118 None:intergenic 35.0%
GATGACAATTATGGCCATAA+AGG - chr1_3:3862352-3862371 Msa0097970:intron 35.0%
GGCCATAAAGGATATTTGTT+TGG - chr1_3:3862364-3862383 Msa0097970:intron 35.0%
AAGTTAGCAATTCCAGATAG+TGG - chr1_3:3862647-3862666 Msa0097970:intron 35.0%
AGTTAGCAATTCCAGATAGT+GGG - chr1_3:3862648-3862667 Msa0097970:intron 35.0%
TCATAGACACAATTCGAACT+CGG - chr1_3:3862825-3862844 Msa0097970:intron 35.0%
! ATACTTTTCCTGCCAAACAA+GGG + chr1_3:3863107-3863126 None:intergenic 35.0%
! AATACTTTTCCTGCCAAACA+AGG + chr1_3:3863108-3863127 None:intergenic 35.0%
! TTGTTTGGCAGGAAAAGTAT+TGG - chr1_3:3863107-3863126 Msa0097970:intron 35.0%
TGTAAGGAAGATAAGGCATA+GGG + chr1_3:3863418-3863437 None:intergenic 35.0%
TTGCTTGTTTATGGTAGACA+AGG - chr1_3:3863455-3863474 Msa0097970:intron 35.0%
TTGTTTATGGTAGACAAGGT+CGG - chr1_3:3863459-3863478 Msa0097970:intron 35.0%
!! CGTTTTGGACTTTATTGCAA+AGG - chr1_3:3863605-3863624 Msa0097970:intron 35.0%
! TTTATTGCAAAGGTTAGCTG+TGG - chr1_3:3863615-3863634 Msa0097970:intron 35.0%
TAAGCAATGGGGAAATAAAG+TGG + chr1_3:3863656-3863675 None:intergenic 35.0%
TTTGTGTTTCTTGTATGTGC+AGG - chr1_3:3863981-3864000 Msa0097970:intron 35.0%
! TCTTTACTCTTTGGAGAGTA+AGG - chr1_3:3864008-3864027 Msa0097970:intron 35.0%
CCTTCACAAAATGCAATAAG+TGG + chr1_3:3864036-3864055 None:intergenic 35.0%
! CCACTTATTGCATTTTGTGA+AGG - chr1_3:3864033-3864052 Msa0097970:intron 35.0%
CAACAAGTGGATCATGAAAA+AGG + chr1_3:3864071-3864090 None:intergenic 35.0%
! TTGGTTCGTGGTATATTGTA+TGG + chr1_3:3864101-3864120 None:intergenic 35.0%
TACAATATACCACGAACCAA+AGG - chr1_3:3864101-3864120 Msa0097970:intron 35.0%
CATATAGGATCCCAATAATG+AGG + chr1_3:3864129-3864148 None:intergenic 35.0%
! TCTTTTTCCATACCAGGAAA+GGG - chr1_3:3864345-3864364 Msa0097970:intron 35.0%
AGGTGAAATGTCAAACTACA+AGG + chr1_3:3864392-3864411 None:intergenic 35.0%
GCAGTCAATACAAACTTGTA+TGG + chr1_3:3864511-3864530 None:intergenic 35.0%
GTGAGGTGAATAGATATTTG+TGG + chr1_3:3864832-3864851 None:intergenic 35.0%
TCGGAAAGTGAAAGTAAGAT+TGG - chr1_3:3864883-3864902 Msa0097970:intron 35.0%
GGAAAACATGTTGAATCTGA+TGG + chr1_3:3864991-3865010 None:intergenic 35.0%
ATTAATCATCCATTGAGCTG+AGG - chr1_3:3865064-3865083 Msa0097970:intron 35.0%
TTAATCATCCATTGAGCTGA+GGG - chr1_3:3865065-3865084 Msa0097970:intron 35.0%
GCAATCATACTACATTTGCA+TGG + chr1_3:3865114-3865133 None:intergenic 35.0%
ACGTGTGACACACTATTTAT+TGG - chr1_3:3865190-3865209 Msa0097970:intron 35.0%
! GCTTTCTGTCATCATTGTTT+TGG - chr1_3:3865241-3865260 Msa0097970:intron 35.0%
TTGTCCATGAACACAATTGA+TGG + chr1_3:3865456-3865475 None:intergenic 35.0%
! GATATGCAGATAATGGCTAT+TGG - chr1_3:3865585-3865604 Msa0097970:intron 35.0%
TCAGAATGCATATCGATAGA+TGG + chr1_3:3865742-3865761 None:intergenic 35.0%
AACTTACACCTCTGTAGAAA+GGG + chr1_3:3865794-3865813 None:intergenic 35.0%
TTTCGCGAAGGAAAATGAAT+GGG + chr1_3:3865843-3865862 None:intergenic 35.0%
! TTTTCGCGAAGGAAAATGAA+TGG + chr1_3:3865844-3865863 None:intergenic 35.0%
! ATTCATTTTCCTTCGCGAAA+AGG - chr1_3:3865843-3865862 Msa0097970:CDS 35.0%
TGGCTGTAACTCATTCATTA+AGG - chr1_3:3865908-3865927 Msa0097970:CDS 35.0%
! TGTTTTCATGTCTAAAGGCA+TGG - chr1_3:3865937-3865956 Msa0097970:CDS 35.0%
! GGCTGTTACTGTGAAATTTT+TGG - chr1_3:3866008-3866027 Msa0097970:exon 35.0%
!!! ACTTGACAGCTCTAGTTTTA+TGG + chr1_3:3866106-3866125 None:intergenic 35.0%
!! GCAATGTTGCTTTCGTTTCT+CGG + chr1_3:3859051-3859070 None:intergenic 40.0%
AACGAAAGCAACATTGCTGA+AGG - chr1_3:3859054-3859073 Msa0097970:three_prime_UTR 40.0%
!! ATTGCTGAAGGATTAGCCAT+AGG - chr1_3:3859066-3859085 Msa0097970:three_prime_UTR 40.0%
AGAGTTACAGAAAGGAACGA+CGG + chr1_3:3859245-3859264 None:intergenic 40.0%
! TGAAAAGCGCAAAAGAGACA+CGG + chr1_3:3859279-3859298 None:intergenic 40.0%
ACCAGCAATTGCAACCATTT+CGG - chr1_3:3859302-3859321 Msa0097970:three_prime_UTR 40.0%
AACTCCTTCTTCTTCCTCTT+CGG + chr1_3:3859388-3859407 None:intergenic 40.0%
ACCAAGATTTCAGGATCATC+GGG + chr1_3:3859448-3859467 None:intergenic 40.0%
CTGATAGTTCCCATATGAAG+AGG - chr1_3:3859647-3859666 Msa0097970:intron 40.0%
CTGGACAAAATGTTCTCCTA+TGG - chr1_3:3859865-3859884 Msa0097970:intron 40.0%
TGTTCTCCTATGGTTTAGTG+AGG - chr1_3:3859875-3859894 Msa0097970:intron 40.0%
GTTCTCCTATGGTTTAGTGA+GGG - chr1_3:3859876-3859895 Msa0097970:intron 40.0%
TTCTCCTATGGTTTAGTGAG+GGG - chr1_3:3859877-3859896 Msa0097970:intron 40.0%
ATGCCAGTTTCATTGCCATT+GGG + chr1_3:3860281-3860300 None:intergenic 40.0%
AATGCCAGTTTCATTGCCAT+TGG + chr1_3:3860282-3860301 None:intergenic 40.0%
GCAATGAAACTGGCATTTGA+TGG - chr1_3:3860285-3860304 Msa0097970:intron 40.0%
! CTGGCATTTGATGGTTTGAA+AGG - chr1_3:3860294-3860313 Msa0097970:intron 40.0%
TCAATGTCACAACATGAACC+TGG - chr1_3:3860462-3860481 Msa0097970:CDS 40.0%
ACAATAGGAAGATTGAGTCC+AGG + chr1_3:3860483-3860502 None:intergenic 40.0%
TTCATCAAGCACTTGGCAAT+TGG + chr1_3:3860573-3860592 None:intergenic 40.0%
TTACACTTCTGCAAAAGGCA+TGG - chr1_3:3860764-3860783 Msa0097970:intron 40.0%
GAAGCTTGAGATACAAAAGG+TGG - chr1_3:3861078-3861097 Msa0097970:CDS 40.0%
ACAAAAGGTGGAAAGCAAAC+TGG - chr1_3:3861090-3861109 Msa0097970:CDS 40.0%
ACAACATGAGATGAGCATGT+TGG - chr1_3:3861160-3861179 Msa0097970:intron 40.0%
TGTACAGCATAACACTGTCT+TGG + chr1_3:3861197-3861216 None:intergenic 40.0%
CCAAAAGATGTAACAAGCCA+TGG + chr1_3:3861277-3861296 None:intergenic 40.0%
!!! CCATGGCTTGTTACATCTTT+TGG - chr1_3:3861274-3861293 Msa0097970:intron 40.0%
TGAAGAGGCTGAAGTAGAAA+TGG - chr1_3:3861316-3861335 Msa0097970:intron 40.0%
! GAACTCCTTTTGCAAAGTCT+TGG - chr1_3:3861350-3861369 Msa0097970:intron 40.0%
! TCCTTTTGCAAAGTCTTGGT+TGG - chr1_3:3861354-3861373 Msa0097970:intron 40.0%
TCCAACCAAGACTTTGCAAA+AGG + chr1_3:3861358-3861377 None:intergenic 40.0%
TTGCAAAGTCTTGGTTGGAA+AGG - chr1_3:3861359-3861378 Msa0097970:intron 40.0%
AGTCTTGGTTGGAAAGGAAA+AGG - chr1_3:3861365-3861384 Msa0097970:intron 40.0%
GTCTTGGTTGGAAAGGAAAA+GGG - chr1_3:3861366-3861385 Msa0097970:intron 40.0%
!!! ACCATCTGAACTGTTTTGGT+GGG + chr1_3:3861432-3861451 None:intergenic 40.0%
!! TACCATCTGAACTGTTTTGG+TGG + chr1_3:3861433-3861452 None:intergenic 40.0%
TCAACATCTGTGAACCAGTA+TGG - chr1_3:3861477-3861496 Msa0097970:intron 40.0%
TGGAGGTTACTTGAATGTGA+GGG + chr1_3:3861523-3861542 None:intergenic 40.0%
ATGGAGGTTACTTGAATGTG+AGG + chr1_3:3861524-3861543 None:intergenic 40.0%
GTCAAAGACAGGAAGAAAGA+AGG - chr1_3:3861588-3861607 Msa0097970:intron 40.0%
GTGAAAATTGTGATAGCCAC+TGG - chr1_3:3861819-3861838 Msa0097970:intron 40.0%
GTGGATTTAGCTGGAAAAGA+TGG - chr1_3:3862054-3862073 Msa0097970:intron 40.0%
!!! TTCTCCTGGGGTTTTTTTAC+AGG - chr1_3:3862092-3862111 Msa0097970:intron 40.0%
GCGTCATCAGAAACATGAAA+AGG + chr1_3:3862128-3862147 None:intergenic 40.0%
AAGTTGTCAACATTGCTCAG+TGG - chr1_3:3862321-3862340 Msa0097970:intron 40.0%
CATAGACACAATTCGAACTC+GGG - chr1_3:3862826-3862845 Msa0097970:intron 40.0%
AGAATAGAGTAAGATGGAGC+CGG - chr1_3:3863033-3863052 Msa0097970:CDS 40.0%
GTGTAAGGAAGATAAGGCAT+AGG + chr1_3:3863419-3863438 None:intergenic 40.0%
CATGTGGTGTAAGGAAGATA+AGG + chr1_3:3863425-3863444 None:intergenic 40.0%
TTCCAGGGATTGCTTGTTTA+TGG - chr1_3:3863446-3863465 Msa0097970:intron 40.0%
TACCATAAACAAGCAATCCC+TGG + chr1_3:3863451-3863470 None:intergenic 40.0%
TGTTTATGGTAGACAAGGTC+GGG - chr1_3:3863460-3863479 Msa0097970:intron 40.0%
GACAAGGTCGGGAAATATAT+AGG - chr1_3:3863471-3863490 Msa0097970:intron 40.0%
ATATAGGAGCAGCTTAGATC+CGG - chr1_3:3863487-3863506 Msa0097970:CDS 40.0%
CCAAAACGACAAAGGAATAC+AGG + chr1_3:3863593-3863612 None:intergenic 40.0%
!! CCTGTATTCCTTTGTCGTTT+TGG - chr1_3:3863590-3863609 Msa0097970:intron 40.0%
TTATTATCGAGCTCACTTGC+TGG - chr1_3:3863813-3863832 Msa0097970:CDS 40.0%
TATTATCGAGCTCACTTGCT+GGG - chr1_3:3863814-3863833 Msa0097970:CDS 40.0%
CATGAAAAAGGGTTAAGCAG+CGG + chr1_3:3864059-3864078 None:intergenic 40.0%
GTATGGAGTGAATCAACAAG+TGG + chr1_3:3864084-3864103 None:intergenic 40.0%
!! AACCAAAGGTGCCTCATTAT+TGG - chr1_3:3864115-3864134 Msa0097970:intron 40.0%
!! ACCAAAGGTGCCTCATTATT+GGG - chr1_3:3864116-3864135 Msa0097970:intron 40.0%
CCAGAAGATCTTCAACAGAA+GGG + chr1_3:3864221-3864240 None:intergenic 40.0%
CTGACATACAGGTATTCACT+AGG - chr1_3:3864247-3864266 Msa0097970:intron 40.0%
! TGAAGGTCTTTTTCCATACC+AGG - chr1_3:3864339-3864358 Msa0097970:intron 40.0%
! GTCTTTTTCCATACCAGGAA+AGG - chr1_3:3864344-3864363 Msa0097970:intron 40.0%
! CTTTTTCCATACCAGGAAAG+GGG - chr1_3:3864346-3864365 Msa0097970:intron 40.0%
! TTTTTCCATACCAGGAAAGG+GGG - chr1_3:3864347-3864366 Msa0097970:intron 40.0%
TAATGTATCCGACACACTCT+GGG + chr1_3:3864662-3864681 None:intergenic 40.0%
TTTGTTGCATCTGACCAGTA+TGG + chr1_3:3864688-3864707 None:intergenic 40.0%
TACTGGTCAGATGCAACAAA+AGG - chr1_3:3864688-3864707 Msa0097970:CDS 40.0%
ATGCTGGAAATTGTACCCTT+GGG - chr1_3:3864742-3864761 Msa0097970:CDS 40.0%
TACCCTTGGGAACATGTAAA+GGG - chr1_3:3864755-3864774 Msa0097970:CDS 40.0%
TTCCCTTTACATGTTCCCAA+GGG + chr1_3:3864760-3864779 None:intergenic 40.0%
TTGGGAACATGTAAAGGGAA+CGG - chr1_3:3864760-3864779 Msa0097970:CDS 40.0%
!! AAAAGTGCTGCTTGATCACT+TGG - chr1_3:3864786-3864805 Msa0097970:CDS 40.0%
!! AAAGTGCTGCTTGATCACTT+GGG - chr1_3:3864787-3864806 Msa0097970:CDS 40.0%
TAATCATCCATTGAGCTGAG+GGG - chr1_3:3865066-3865085 Msa0097970:intron 40.0%
TAGGCCTTTAATATTGCAGC+AGG - chr1_3:3865519-3865538 Msa0097970:intron 40.0%
ACAGCCTGCTGCAATATTAA+AGG + chr1_3:3865526-3865545 None:intergenic 40.0%
! CAGATAATGGCTATTGGTGA+TGG - chr1_3:3865591-3865610 Msa0097970:intron 40.0%
! TTAGGCATTGCACTGAGTAA+TGG - chr1_3:3865648-3865667 Msa0097970:intron 40.0%
GGTTTAAGCAACGATGAAGA+TGG - chr1_3:3865705-3865724 Msa0097970:CDS 40.0%
ATTGCATTCCCTTTCTACAG+AGG - chr1_3:3865783-3865802 Msa0097970:CDS 40.0%
CAACTTACACCTCTGTAGAA+AGG + chr1_3:3865795-3865814 None:intergenic 40.0%
! TCATCTTTACCTTTTCGCGA+AGG + chr1_3:3865855-3865874 None:intergenic 40.0%
GGAATGGAAGCTATTGCCTA+TGG + chr1_3:3859085-3859104 None:intergenic 45.0%
! ACATGATGGAGTTGAAGGGA+GGG + chr1_3:3859159-3859178 None:intergenic 45.0%
! CGTGACATGATGGAGTTGAA+GGG + chr1_3:3859163-3859182 None:intergenic 45.0%
! ACGTGACATGATGGAGTTGA+AGG + chr1_3:3859164-3859183 None:intergenic 45.0%
CGGAATAGGAATGGGATTGA+GGG + chr1_3:3859204-3859223 None:intergenic 45.0%
ACGGAATAGGAATGGGATTG+AGG + chr1_3:3859205-3859224 None:intergenic 45.0%
GAATGCGACGGAATAGGAAT+GGG + chr1_3:3859212-3859231 None:intergenic 45.0%
TGAATGCGACGGAATAGGAA+TGG + chr1_3:3859213-3859232 None:intergenic 45.0%
GTTGTTGAATGCGACGGAAT+AGG + chr1_3:3859218-3859237 None:intergenic 45.0%
CCAGCAATTGCAACCATTTC+GGG - chr1_3:3859303-3859322 Msa0097970:three_prime_UTR 45.0%
CAGCAATTGCAACCATTTCG+GGG - chr1_3:3859304-3859323 Msa0097970:three_prime_UTR 45.0%
! GAGGAGGAAAGAGAGAGTAT+CGG - chr1_3:3859344-3859363 Msa0097970:three_prime_UTR 45.0%
AACCTCCAGTTCGAAAGGAA+GGG + chr1_3:3859676-3859695 None:intergenic 45.0%
TAACCTCCAGTTCGAAAGGA+AGG + chr1_3:3859677-3859696 None:intergenic 45.0%
GTCTTAACCTCCAGTTCGAA+AGG + chr1_3:3859681-3859700 None:intergenic 45.0%
TCTCCTATGGTTTAGTGAGG+GGG - chr1_3:3859878-3859897 Msa0097970:intron 45.0%
GCAAGTAACCGGATCAAAAC+AGG + chr1_3:3859920-3859939 None:intergenic 45.0%
GCTTCGTCTAAATGTCCCAA+TGG - chr1_3:3860263-3860282 Msa0097970:intron 45.0%
TGTCCCAATGGCAATGAAAC+TGG - chr1_3:3860275-3860294 Msa0097970:intron 45.0%
CTGCTATAGATGATGTTGGC+AGG - chr1_3:3860340-3860359 Msa0097970:CDS 45.0%
CAAGACAAGCAGAGGAAAGA+GGG - chr1_3:3860648-3860667 Msa0097970:intron 45.0%
TGATGAGATCCGTATCCTCA+TGG - chr1_3:3860682-3860701 Msa0097970:intron 45.0%
TCCCACCAAAACAGTTCAGA+TGG - chr1_3:3861428-3861447 Msa0097970:intron 45.0%
ATGACGCCTCTGATTCTACA+AGG - chr1_3:3862141-3862160 Msa0097970:intron 45.0%
!! AGCAATTCCAGATAGTGGGT+AGG - chr1_3:3862652-3862671 Msa0097970:intron 45.0%
!! GCAATTCCAGATAGTGGGTA+GGG - chr1_3:3862653-3862672 Msa0097970:intron 45.0%
GCTATGAATGAAGGATGCCA+CGG - chr1_3:3862927-3862946 Msa0097970:intron 45.0%
AACAGACACAGATTGAGCAG+AGG - chr1_3:3862991-3863010 Msa0097970:intron 45.0%
! ATTGAGCAGAGGCATGAGTT+GGG - chr1_3:3863002-3863021 Msa0097970:intron 45.0%
! CACAAAAGGCTTTCGAGTAG+AGG + chr1_3:3863073-3863092 None:intergenic 45.0%
! CTACTCGAAAGCCTTTTGTG+AGG - chr1_3:3863073-3863092 Msa0097970:CDS 45.0%
TCCTTACACCACATGATTCC+AGG - chr1_3:3863430-3863449 Msa0097970:intron 45.0%
CCTTACACCACATGATTCCA+GGG - chr1_3:3863431-3863450 Msa0097970:intron 45.0%
AAGCAATCCCTGGAATCATG+TGG + chr1_3:3863441-3863460 None:intergenic 45.0%
! GTGTGTCAGGGATTTGGTTT+AGG + chr1_3:3863710-3863729 None:intergenic 45.0%
GCAGGCATGTCTTTACTCTT+TGG - chr1_3:3863999-3864018 Msa0097970:intron 45.0%
! TCCCAATAATGAGGCACCTT+TGG + chr1_3:3864120-3864139 None:intergenic 45.0%
CCCTTCTGTTGAAGATCTTC+TGG - chr1_3:3864218-3864237 Msa0097970:intron 45.0%
GCCAGAAGATCTTCAACAGA+AGG + chr1_3:3864222-3864241 None:intergenic 45.0%
! TTGCAGTTGTCTTTGAGGAC+AGG + chr1_3:3864536-3864555 None:intergenic 45.0%
GTAATGTATCCGACACACTC+TGG + chr1_3:3864663-3864682 None:intergenic 45.0%
CGGATACATTACGTCCATAC+TGG - chr1_3:3864671-3864690 Msa0097970:CDS 45.0%
TGGTACAGCTTGAACAACAG+TGG + chr1_3:3864719-3864738 None:intergenic 45.0%
GGTACAATTTCCAGCATGTC+TGG + chr1_3:3864739-3864758 None:intergenic 45.0%
CATGCTGGAAATTGTACCCT+TGG - chr1_3:3864741-3864760 Msa0097970:CDS 45.0%
GTACCCTTGGGAACATGTAA+AGG - chr1_3:3864754-3864773 Msa0097970:CDS 45.0%
GTTCCCTTTACATGTTCCCA+AGG + chr1_3:3864761-3864780 None:intergenic 45.0%
CTTGGGAGTTACTGCTAATG+AGG - chr1_3:3864804-3864823 Msa0097970:CDS 45.0%
! TTTTTGTCCCCTCAGCTCAA+TGG + chr1_3:3865076-3865095 None:intergenic 45.0%
TGATGTAGAGATGCTTGAGC+TGG - chr1_3:3865620-3865639 Msa0097970:intron 45.0%
! ATGCTTGAGCTGGCTTCTTT+AGG - chr1_3:3865630-3865649 Msa0097970:intron 45.0%
ATCAGAGAAGACCAAAGCTG+TGG - chr1_3:3865671-3865690 Msa0097970:intron 45.0%
AATTGCGTTTGCCACAGCTT+TGG + chr1_3:3865685-3865704 None:intergenic 45.0%
AAAGCTGTGGCAAACGCAAT+TGG - chr1_3:3865684-3865703 Msa0097970:CDS 45.0%
TGCATATCGATAGATGGCGT+CGG + chr1_3:3865736-3865755 None:intergenic 45.0%
TATGCATTCTGAGCAGCTGA+AGG - chr1_3:3865750-3865769 Msa0097970:CDS 45.0%
!!! GACAGCTCTAGTTTTATGGC+TGG + chr1_3:3866102-3866121 None:intergenic 45.0%
!!! ATTTTTTTAGAAATAATATT+TGG - chr1_3:3862620-3862639 Msa0097970:intron 5.0%
CTTTCGTTTCTCGGCTTAGC+GGG + chr1_3:3859042-3859061 None:intergenic 50.0%
GCTTTCGTTTCTCGGCTTAG+CGG + chr1_3:3859043-3859062 None:intergenic 50.0%
! ACGCGGAAGCATGAAGAAGA+AGG + chr1_3:3859116-3859135 None:intergenic 50.0%
CGGAGAAGGTTAGAGAAACG+CGG + chr1_3:3859133-3859152 None:intergenic 50.0%
! GACATGATGGAGTTGAAGGG+AGG + chr1_3:3859160-3859179 None:intergenic 50.0%
GTTACAGAAAGGAACGACGG+CGG + chr1_3:3859242-3859261 None:intergenic 50.0%
GGAGGACGAGAGTTACAGAA+AGG + chr1_3:3859253-3859272 None:intergenic 50.0%
CCCGAAATGGTTGCAATTGC+TGG + chr1_3:3859306-3859325 None:intergenic 50.0%
TCTTCTTCCTCTTCGGCGTT+CGG + chr1_3:3859381-3859400 None:intergenic 50.0%
AACGCCGAAGAGGAAGAAGA+AGG - chr1_3:3859381-3859400 Msa0097970:CDS 50.0%
GCCCGATGATCCTGAAATCT+TGG - chr1_3:3859444-3859463 Msa0097970:CDS 50.0%
GAAGGGGTCCCTCTTCATAT+GGG + chr1_3:3859659-3859678 None:intergenic 50.0%
ACCTCCAGTTCGAAAGGAAG+GGG + chr1_3:3859675-3859694 None:intergenic 50.0%
AGTCCCCCTCACTAAACCAT+AGG + chr1_3:3859884-3859903 None:intergenic 50.0%
ATGGTTTAGTGAGGGGGACT+CGG - chr1_3:3859884-3859903 Msa0097970:intron 50.0%
GCAAGACAAGCAGAGGAAAG+AGG - chr1_3:3860647-3860666 Msa0097970:intron 50.0%
GAGATCCGTATCCTCATGGT+TGG - chr1_3:3860686-3860705 Msa0097970:intron 50.0%
!! AACTGCCAAGGCTTTGAGAG+AGG - chr1_3:3861782-3861801 Msa0097970:intron 50.0%
TTTGAGAGAGGCCTCAGCAA+GGG - chr1_3:3861794-3861813 Msa0097970:intron 50.0%
! AATTTTCACGCCCCTTGCTG+AGG + chr1_3:3861808-3861827 None:intergenic 50.0%
GAGCTGCCTTGTAGAATCAG+AGG + chr1_3:3862150-3862169 None:intergenic 50.0%
GCTGCAGAGAACATGTAGGA+TGG - chr1_3:3862949-3862968 Msa0097970:intron 50.0%
! GATTGAGCAGAGGCATGAGT+TGG - chr1_3:3863001-3863020 Msa0097970:intron 50.0%
ATAGAGTAAGATGGAGCCGG+AGG - chr1_3:3863036-3863055 Msa0097970:CDS 50.0%
AGAGGAAAGAGATGTGCCTC+CGG + chr1_3:3863055-3863074 None:intergenic 50.0%
! GGGAACAATGCTTTGAGCAG+TGG - chr1_3:3863137-3863156 Msa0097970:intron 50.0%
CCCTGGAATCATGTGGTGTA+AGG + chr1_3:3863434-3863453 None:intergenic 50.0%
ATTACCTCTCGACAGACGTC+CGG + chr1_3:3863509-3863528 None:intergenic 50.0%
! TTGAGGGTGTGTCAGGGATT+TGG + chr1_3:3863716-3863735 None:intergenic 50.0%
! TGGCTATTGAGGGTGTGTCA+GGG + chr1_3:3863722-3863741 None:intergenic 50.0%
! ATGGCTATTGAGGGTGTGTC+AGG + chr1_3:3863723-3863742 None:intergenic 50.0%
! AGCTCACTTGCTGGGATCTA+TGG - chr1_3:3863822-3863841 Msa0097970:CDS 50.0%
! AATGAGGCACCTTTGGTTCG+TGG + chr1_3:3864113-3864132 None:intergenic 50.0%
TCTGGCATCTGCTGACATAC+AGG - chr1_3:3864236-3864255 Msa0097970:intron 50.0%
TCATTCCCCCTTTCCTGGTA+TGG + chr1_3:3864355-3864374 None:intergenic 50.0%
ACATGTCATTCCCCCTTTCC+TGG + chr1_3:3864360-3864379 None:intergenic 50.0%
TCAAGCTGTACCAGACATGC+TGG - chr1_3:3864726-3864745 Msa0097970:CDS 50.0%
TGATGGAGTTGAAGGGAGGG+TGG + chr1_3:3859156-3859175 None:intergenic 55.0%
CGTGATGGCACGTGACATGA+TGG + chr1_3:3859173-3859192 None:intergenic 55.0%
! TTGAGGGAGAGAGCACGTGA+TGG + chr1_3:3859188-3859207 None:intergenic 55.0%
GCTGCACGTATTCCCCGAAA+TGG + chr1_3:3859319-3859338 None:intergenic 55.0%
CTCTCTCTTTCCTCCTCCGT+CGG + chr1_3:3859341-3859360 None:intergenic 55.0%
GGAAGGGGTCCCTCTTCATA+TGG + chr1_3:3859660-3859679 None:intergenic 55.0%
ACCCCTTCCTTTCGAACTGG+AGG - chr1_3:3859671-3859690 Msa0097970:intron 55.0%
TGGTTTAGTGAGGGGGACTC+GGG - chr1_3:3859885-3859904 Msa0097970:intron 55.0%
GACAGCAGCAAGACAAGCAG+AGG - chr1_3:3860640-3860659 Msa0097970:intron 55.0%
TGAGGCCTCTCTCAAAGCCT+TGG + chr1_3:3861790-3861809 None:intergenic 55.0%
! CTTTGAGAGAGGCCTCAGCA+AGG - chr1_3:3861793-3861812 Msa0097970:intron 55.0%
TTGAGAGAGGCCTCAGCAAG+GGG - chr1_3:3861795-3861814 Msa0097970:intron 55.0%
CCATCTCCCTACCCACTATC+TGG + chr1_3:3862662-3862681 None:intergenic 55.0%
!! CCAGATAGTGGGTAGGGAGA+TGG - chr1_3:3862659-3862678 Msa0097970:intron 55.0%
CTACATGTTCTCTGCAGCCG+TGG + chr1_3:3862947-3862966 None:intergenic 55.0%
CACGGCTGCAGAGAACATGT+AGG - chr1_3:3862945-3862964 Msa0097970:intron 55.0%
GGGCACAACTGCCTCACAAA+AGG + chr1_3:3863087-3863106 None:intergenic 55.0%
GAGGCAGTTGTGCCCTTGTT+TGG - chr1_3:3863092-3863111 Msa0097970:CDS 55.0%
! CAGTTGTGCCCTTGTTTGGC+AGG - chr1_3:3863096-3863115 Msa0097970:CDS 55.0%
AGACACTGCCCAGAGTGTGT+CGG - chr1_3:3864651-3864670 Msa0097970:CDS 55.0%
CGGCTTAGCGGGAGATGCAA+TGG + chr1_3:3859031-3859050 None:intergenic 60.0%
TGGAGTTGAAGGGAGGGTGG+CGG + chr1_3:3859153-3859172 None:intergenic 60.0%
GGCGGCGTTGTTGAATGCGA+CGG + chr1_3:3859224-3859243 None:intergenic 60.0%
GCAAAAGAGACACGGCGAGG+AGG + chr1_3:3859271-3859290 None:intergenic 60.0%
AGCGCAAAAGAGACACGGCG+AGG + chr1_3:3859274-3859293 None:intergenic 60.0%
TCAGAAGCCGAACGCCGAAG+AGG - chr1_3:3859371-3859390 Msa0097970:exon 60.0%
GGGACCCCTTCCTTTCGAAC+TGG - chr1_3:3859668-3859687 Msa0097970:intron 60.0%
AGATCCGGACGTCTGTCGAG+AGG - chr1_3:3863502-3863521 Msa0097970:CDS 60.0%
!! TGAAGGGAGGGTGGCGGAGA+AGG + chr1_3:3859147-3859166 None:intergenic 65.0%
CGGGGAATACGTGCAGCCGA+CGG - chr1_3:3859322-3859341 Msa0097970:three_prime_UTR 65.0%
GGAATACGTGCAGCCGACGG+AGG - chr1_3:3859325-3859344 Msa0097970:three_prime_UTR 65.0%
ATACGTGCAGCCGACGGAGG+AGG - chr1_3:3859328-3859347 Msa0097970:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3858960 3866178 3858960 ID=Msa0097970;Name=Msa0097970
chr1_3 mRNA 3858960 3866178 3858960 ID=Msa0097970-mRNA-1;Parent=Msa0097970;Name=Msa0097970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=164|0.83|0.92|0.92|1|1|13|417|594
chr1_3 exon 3858960 3859544 3858960 ID=Msa0097970-mRNA-1:exon:1250;Parent=Msa0097970-mRNA-1
chr1_3 exon 3860313 3860501 3860313 ID=Msa0097970-mRNA-1:exon:1249;Parent=Msa0097970-mRNA-1
chr1_3 exon 3860881 3860931 3860881 ID=Msa0097970-mRNA-1:exon:1248;Parent=Msa0097970-mRNA-1
chr1_3 exon 3861016 3861135 3861016 ID=Msa0097970-mRNA-1:exon:1247;Parent=Msa0097970-mRNA-1
chr1_3 exon 3861615 3861686 3861615 ID=Msa0097970-mRNA-1:exon:1246;Parent=Msa0097970-mRNA-1
chr1_3 exon 3861967 3862020 3861967 ID=Msa0097970-mRNA-1:exon:1245;Parent=Msa0097970-mRNA-1
chr1_3 exon 3863025 3863117 3863025 ID=Msa0097970-mRNA-1:exon:1244;Parent=Msa0097970-mRNA-1
chr1_3 exon 3863293 3863393 3863293 ID=Msa0097970-mRNA-1:exon:1243;Parent=Msa0097970-mRNA-1
chr1_3 exon 3863475 3863543 3863475 ID=Msa0097970-mRNA-1:exon:1242;Parent=Msa0097970-mRNA-1
chr1_3 exon 3863689 3863866 3863689 ID=Msa0097970-mRNA-1:exon:1241;Parent=Msa0097970-mRNA-1
chr1_3 exon 3864435 3864530 3864435 ID=Msa0097970-mRNA-1:exon:1240;Parent=Msa0097970-mRNA-1
chr1_3 exon 3864638 3864889 3864638 ID=Msa0097970-mRNA-1:exon:1239;Parent=Msa0097970-mRNA-1
chr1_3 exon 3865673 3866178 3865673 ID=Msa0097970-mRNA-1:exon:1238;Parent=Msa0097970-mRNA-1
chr1_3 five_prime_UTR 3866015 3866178 3866015 ID=Msa0097970-mRNA-1:five_prime_utr;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3865673 3866014 3865673 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3864638 3864889 3864638 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3864435 3864530 3864435 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3863689 3863866 3863689 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3863475 3863543 3863475 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3863293 3863393 3863293 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3863025 3863117 3863025 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3861967 3862020 3861967 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3861615 3861686 3861615 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3861016 3861135 3861016 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3860881 3860931 3860881 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3860313 3860501 3860313 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 CDS 3859377 3859544 3859377 ID=Msa0097970-mRNA-1:cds;Parent=Msa0097970-mRNA-1
chr1_3 three_prime_UTR 3858960 3859376 3858960 ID=Msa0097970-mRNA-1:three_prime_utr;Parent=Msa0097970-mRNA-1
Gene Sequence

>Msa0097970

ATGCTTCCGCGTTTCTCTAACCTTCTCCGCCACCCTCCCTTCAACTCCATCATGTCACGTGCCATCACGTGCTCTCTCCCTCAATCCCATTCCTATTCCGTCGCATTCAACAACGCCGCCGTCGTTCCTTTCTGTAACTCTCGTCCTCCTCGCCGTGTCTCTTTTGCGCTTTTCAATAACCAGCAATTGCAACCATTTCGGGGAATACGTGCAGCCGACGGAGGAGGAAAGAGAGAGTATCGGAAAGTCAGAAGCCGAACGCCGAAGAGGAAGAAGAAGGAGTTAGAACTCTCTGTCCCTATTTGCATCGAAGAAAGTTTGCCCGATGATCCTGAAATCTTGAATATTGCAGAGATGCTTCGTCTAAATGTCCCAATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGTTCAGAGTATAAAACAAGAGATACTGCTATAGATGATGTTGGCAGGTTTGAAAGTGTTGAGTTATCCGTGCTTCTTTGTAATGATGAGTTTATACAAAAACTTAACAAGGAATGGAGAGATGAAGATCACGCTACTGATGTTCTCTCAATGTCACAACATGAACCTGGACTCAATCTTCCTATTCTTATGTTGGGTGATATTGTAATTTCTCTTGAGACAGCAGCAAGACAAGCAGAGGAAAGAGGGCACACACTTCTTGATGAGATCCGTATCCTCATGGTCCATGGCTTGTTACATCTTTTGGGATTTGATCATGAATTAAGTGAAGAGGCTGAAGTAGAAATGGAGAAAGAAGAGGAACTCCTTTTGCAAAGTCTTGGTTGGAAAGGAAAAGGGCTAATAAAGAGTGCATATGATGCTGAAGAAAATGCAAGTTCCCACCAAAACAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTCGATTTTACAAACCAAAGTTCAGCTATATCTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTACTTCAACTGCCAAGGCTTTGAGAGAGGCCTCAGCAAGGGGCGTGAAAATTGTGATAGCCACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGAAGGTGGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTTTTACAGGAAAAGTATTGGATTGTTTGGGAACAATGCTTTGAGCAGTGGCATATTGATATCGGATTGCTTGTTTATGGTAGACAAGGTCGGGAAATATATAGGAGCAGCTTAGATCCGGACGTCTGTCGAGAGGCATGTCTTTACTCTTTGGAGAGTAAGGTTCCACTTATTGCATTTTGTGAAGGCCGCTGCTTAACCCTTTTTCATGATCCACTTGTTGATTCACTCCATACAATATACCACGAACCAAAGGCTGAGATCATCCCTTCTGTTGAAGATCTTCTGGCATCTGCTGACATACAGAAAATGATTTTCTTAGACACTGCCCAGAGTGTGTCGGATACATTACGTCCATACTGGTCAGATGCAACAAAAGGTCGTGCCACTGTTGTTCAAGCTGTACCAGACATGCTGGAAATTGTACCCTTGGGAACATGTAAAGGGAACGGAGTAAAAGTGCTGCTTGATCACTTGGGAGTTACTGCTAATGAGATAATGGCTATTGGTGATGGCGAAAATGATGTAGAGATGCTTGAGCTGGCTTCTTTAGGCATTGCACTGAGTAATGGATCAGAGAAGACCAAAGCTGTGGCAAACGCAATTGGTTTAAGCAACGATGAAGATGGTGCAGCCGACGCCATCTATCGATATGCATTCTGA

Protein sequence

>Msa0097970

MLPRFSNLLRHPPFNSIMSRAITCSLPQSHSYSVAFNNAAVVPFCNSRPPRRVSFALFNNQQLQPFRGIRAADGGGKREYRKVRSRTPKRKKKELELSVPICIEESLPDDPEILNIAEMLRLNVPMAMKLAFDGLKGSEYKTRDTAIDDVGRFESVELSVLLCNDEFIQKLNKEWRDEDHATDVLSMSQHEPGLNLPILMLGDIVISLETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHELSEEAEVEMEKEEELLLQSLGWKGKGLIKSAYDAEENASSHQNSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISTSTAKALREASARGVKIVIATGKARPAVIDIFKKVDLAGKDGIVSEFSPGVFLQEKYWIVWEQCFEQWHIDIGLLVYGRQGREIYRSSLDPDVCREACLYSLESKVPLIAFCEGRCLTLFHDPLVDSLHTIYHEPKAEIIPSVEDLLASADIQKMIFLDTAQSVSDTLRPYWSDATKGRATVVQAVPDMLEIVPLGTCKGNGVKVLLDHLGVTANEIMAIGDGENDVEMLELASLGIALSNGSEKTKAVANAIGLSNDEDGAADAIYRYAF*