AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0675230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0675230 MtrunA17_Chr4g0018621 78.571 308 31 3 1 307 1 274 5.90e-156 436
Msa0675230 MtrunA17_Chr7g0232051 33.036 112 70 1 155 266 84 190 1.99e-14 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0675230 AT4G25170.1 34.978 223 117 6 102 304 127 341 2.77e-30 117
Msa0675230 AT4G25170.2 35.849 212 108 6 113 304 153 356 1.35e-29 115
Msa0675230 AT5G61490.1 39.759 166 87 2 140 304 102 255 7.85e-29 111

Find 62 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTATTGTTTAGCAAATT+TGG 0.091915 4_4:-23769060 Msa0675230:CDS
AAAGAGTTTAAAACAGAAAA+AGG 0.227940 4_4:+23771096 None:intergenic
CAGCATAAGTGCAGGGTGTT+AGG 0.262984 4_4:-23769008 Msa0675230:CDS
CTCGATTACTTCAATGAGTT+TGG 0.273662 4_4:+23767967 None:intergenic
CTTCACGTGCCGAGCTCCTT+AGG 0.274000 4_4:-23768980 Msa0675230:CDS
GCCAGTAGTAGTAGTATTAT+TGG 0.291374 4_4:+23771059 None:intergenic
TTTCTTGAACTTAATTTAGA+TGG 0.293854 4_4:-23767607 Msa0675230:three_prime_UTR
CCAGTAGTAGTAGTATTATT+GGG 0.320185 4_4:+23771060 None:intergenic
AAAACATTTGTTGTATTGTC+AGG 0.320543 4_4:+23768016 None:intergenic
TTCTTTCATGCTTTCGATCA+TGG 0.323980 4_4:-23767846 Msa0675230:CDS
TGATAAAGATTTGCGTTTGC+AGG 0.345537 4_4:+23771161 None:intergenic
TATCAACCGATGAAGCTGTT+TGG 0.376110 4_4:-23768442 Msa0675230:CDS
ATCAACCGATGAAGCTGTTT+GGG 0.379156 4_4:-23768441 Msa0675230:CDS
GCAGACTGATCCCTCTGTTC+AGG 0.380216 4_4:-23768799 Msa0675230:intron
TGAGAAGAATAAGAAGATAA+TGG 0.393458 4_4:+23771129 None:intergenic
AATAAGAAGATAATGGAAAA+GGG 0.394078 4_4:+23771136 None:intergenic
GAATAAGAAGATAATGGAAA+AGG 0.394823 4_4:+23771135 None:intergenic
CCCAATAATACTACTACTAC+TGG 0.415755 4_4:-23771060 Msa0675230:CDS
AGCATAAGTGCAGGGTGTTA+GGG 0.422717 4_4:-23769007 Msa0675230:CDS
AATTATGTTGCGCCTAACTT+TGG 0.436566 4_4:+23767795 None:intergenic
AGGAGCTCGGCACGTGAAGC+AGG 0.444376 4_4:+23768984 None:intergenic
TATTCTCATCTTCAGAAACT+TGG 0.451065 4_4:+23768913 None:intergenic
CCGAAAATGCTACAGGATGA+TGG 0.461296 4_4:-23768855 Msa0675230:CDS
GGATTATATGGAAACAAAGA+TGG 0.462920 4_4:+23768876 None:intergenic
ATGAAGTTGTTCAGCAACTC+AGG 0.463056 4_4:-23768403 Msa0675230:CDS
CATGTGTAAAAGAGTGTTCA+TGG 0.468923 4_4:+23767736 None:intergenic
TTCACGTGCCGAGCTCCTTA+GGG 0.470566 4_4:-23768979 Msa0675230:CDS
GAAATTGAGCTAGGCAGTCT+TGG 0.472920 4_4:-23768936 Msa0675230:CDS
ACCATTACAATGAAGCTTCG+CGG 0.494281 4_4:-23771204 None:intergenic
TCCTCCTCCTTCTCAGACTG+AGG 0.507420 4_4:-23770992 Msa0675230:intron
ATATAATCCGAAAATGCTAC+AGG 0.513690 4_4:-23768862 Msa0675230:CDS
GGTGCATCGTAACCAAAGTT+AGG 0.522125 4_4:-23767807 Msa0675230:exon
AAACATTTGTTGTATTGTCA+GGG 0.524197 4_4:+23768017 None:intergenic
ATAAATCTCAGCATAAGTGC+AGG 0.535395 4_4:-23769016 Msa0675230:CDS
GGTGTTGATGAACCCCTCAT+TGG 0.538063 4_4:-23771015 Msa0675230:CDS
GTGCCGAGCTCCTTAGGGAC+AGG 0.542730 4_4:-23768974 Msa0675230:CDS
AGAAGGAGGAGGACCAATGA+GGG 0.542894 4_4:+23771002 None:intergenic
TGTTGAAATACCTGTCCCTA+AGG 0.548759 4_4:+23768964 None:intergenic
AGCCTCCCAAACAGCTTCAT+CGG 0.552589 4_4:+23768436 None:intergenic
CATCAACACCATCATCATCA+TGG 0.563044 4_4:+23771028 None:intergenic
ATAAGAAGATAATGGAAAAG+GGG 0.572203 4_4:+23771137 None:intergenic
CTGAAGATGAGAATATAGAC+TGG 0.575112 4_4:-23768905 Msa0675230:CDS
AACAAACTAGAAATTGAGCT+AGG 0.577265 4_4:-23768945 Msa0675230:CDS
CAGTAGTAGTAGTATTATTG+GGG 0.585051 4_4:+23771061 None:intergenic
TGAAGTTGTTCAGCAACTCA+GGG 0.586059 4_4:-23768402 Msa0675230:CDS
GATCATGGTCTTGTTGATTG+TGG 0.588306 4_4:-23767831 Msa0675230:CDS
ATAGACTGCACCTGAACAGA+GGG 0.590888 4_4:+23768789 None:intergenic
ATACCTGTCCCTAAGGAGCT+CGG 0.592229 4_4:+23768971 None:intergenic
TCATGAACCTCAGTCTGAGA+AGG 0.608952 4_4:+23770985 None:intergenic
TTTGCGTTTGCAGGTACGTG+TGG 0.611697 4_4:+23771170 None:intergenic
CATGGTCTTGTTGATTGTGG+TGG 0.612289 4_4:-23767828 Msa0675230:CDS
ACCTCAGTCTGAGAAGGAGG+AGG 0.614509 4_4:+23770991 None:intergenic
GAGAAGGAGGAGGACCAATG+AGG 0.618951 4_4:+23771001 None:intergenic
TGAACCTCAGTCTGAGAAGG+AGG 0.629101 4_4:+23770988 None:intergenic
GATGCTATCCATGATGATGA+TGG 0.636543 4_4:-23771036 Msa0675230:CDS
AACCGATGAAGCTGTTTGGG+AGG 0.644231 4_4:-23768438 Msa0675230:CDS
CATAGACTGCACCTGAACAG+AGG 0.657496 4_4:+23768788 None:intergenic
TAAATCTCAGCATAAGTGCA+GGG 0.673955 4_4:-23769015 Msa0675230:CDS
GAAGGAGGAGGACCAATGAG+GGG 0.689346 4_4:+23771003 None:intergenic
AAGTTGTTCAGCAACTCAGG+GGG 0.698699 4_4:-23768400 Msa0675230:CDS
GAAGTTGTTCAGCAACTCAG+GGG 0.702778 4_4:-23768401 Msa0675230:CDS
AGTAGTAGTAGTATTATTGG+GGG 0.747404 4_4:+23771062 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTGTTTAAGTGATAT+TGG - chr4_4:23767925-23767944 Msa0675230:CDS 15.0%
!! AAACAATATGAGATTAATAT+AGG + chr4_4:23768552-23768571 None:intergenic 15.0%
!! AGAGTTAAAAAAAATGATAT+AGG - chr4_4:23768576-23768595 Msa0675230:intron 15.0%
!!! TGAATTTGATTTTTTGAATT+CGG - chr4_4:23768933-23768952 Msa0675230:CDS 15.0%
!!! TTATAGATATTTGATAACTA+AGG - chr4_4:23770297-23770316 Msa0675230:intron 15.0%
!!! TTTTCGTTTTCTTTAATATT+TGG - chr4_4:23770441-23770460 Msa0675230:intron 15.0%
!!! AAATTTTTTTATCACAATCT+TGG + chr4_4:23770858-23770877 None:intergenic 15.0%
!!! AATAAGAAGATAATGGAAAA+GGG + chr4_4:23767659-23767678 None:intergenic 20.0%
!!! AAAGAGTTTAAAACAGAAAA+AGG + chr4_4:23767699-23767718 None:intergenic 20.0%
!!! CATACATAAGCTATTTTTAT+AGG - chr4_4:23768036-23768055 Msa0675230:CDS 20.0%
!!! GATTTTTTTCGAATTATTAG+CGG + chr4_4:23768391-23768410 None:intergenic 20.0%
!!! CATAATTATATTGGTAATGA+TGG - chr4_4:23768494-23768513 Msa0675230:intron 20.0%
!! TGAGATTAATATAGGATATA+TGG + chr4_4:23768544-23768563 None:intergenic 20.0%
!! ATTTGACTGATTAAAAACTT+TGG - chr4_4:23768605-23768624 Msa0675230:intron 20.0%
!!! GTAGTATTTTGAATTCAATT+TGG - chr4_4:23768754-23768773 Msa0675230:intron 20.0%
!!! ATTTTCATCTAAAATTTGCT+CGG - chr4_4:23769052-23769071 Msa0675230:CDS 20.0%
!! GGTTAAAATTCATATAACAA+TGG + chr4_4:23769098-23769117 None:intergenic 20.0%
!! AAACTATTGTTTAGCAAATT+TGG - chr4_4:23769732-23769751 Msa0675230:intron 20.0%
!!! ATACAACAAATGTTTTGATT+TGG - chr4_4:23770783-23770802 Msa0675230:intron 20.0%
!!! TACATTACAACACAATTTTT+TGG - chr4_4:23771024-23771043 Msa0675230:CDS 20.0%
!! TTTCTTGAACTTAATTTAGA+TGG - chr4_4:23771185-23771204 Msa0675230:CDS 20.0%
!!! ATAAGAAGATAATGGAAAAG+GGG + chr4_4:23767658-23767677 None:intergenic 25.0%
!!! GAATAAGAAGATAATGGAAA+AGG + chr4_4:23767660-23767679 None:intergenic 25.0%
! TGAGAAGAATAAGAAGATAA+TGG + chr4_4:23767666-23767685 None:intergenic 25.0%
! CTTCAACGGTAAAAATATAT+TGG - chr4_4:23767843-23767862 Msa0675230:CDS 25.0%
!! TTAAGTGATATTGGTAATCA+TGG - chr4_4:23767934-23767953 Msa0675230:CDS 25.0%
!! ATATTGGTAATCATGGTATA+AGG - chr4_4:23767941-23767960 Msa0675230:CDS 25.0%
!!! CATAAGCTATTTTTATAGGA+AGG - chr4_4:23768040-23768059 Msa0675230:CDS 25.0%
! AAAATAAGCTGAAGCTATAT+TGG - chr4_4:23768132-23768151 Msa0675230:intron 25.0%
!!! CTTCTAAAACCCTTATATTA+AGG - chr4_4:23768302-23768321 Msa0675230:intron 25.0%
! TTCAGTGTAATTATAAGTGT+CGG - chr4_4:23768417-23768436 Msa0675230:CDS 25.0%
! ACCAATATAATTATGAAGCA+CGG + chr4_4:23768489-23768508 None:intergenic 25.0%
!! TAAATTTGATTAGCTGATGT+TGG - chr4_4:23768668-23768687 Msa0675230:intron 25.0%
! TGAATTCAATTTGGCAAATT+TGG - chr4_4:23768763-23768782 Msa0675230:intron 25.0%
!!! TGTGTTTCATAGATTTTAAC+TGG - chr4_4:23769260-23769279 Msa0675230:intron 25.0%
!! AACTAGCAGTAAAATTTTAG+TGG - chr4_4:23769528-23769547 Msa0675230:intron 25.0%
!!! AACAATTTGCTGAAGTTTTT+CGG - chr4_4:23770184-23770203 Msa0675230:intron 25.0%
! ATATAACAATAGCTGCTATT+CGG + chr4_4:23770233-23770252 None:intergenic 25.0%
! AAAGAGATAATTTAACCATG+AGG - chr4_4:23770256-23770275 Msa0675230:intron 25.0%
! GAGTACATAGATTAGATTTA+TGG - chr4_4:23770611-23770630 Msa0675230:intron 25.0%
! ATTATAGAATTATGACCTAC+TGG - chr4_4:23770666-23770685 Msa0675230:intron 25.0%
!!! AAACATTTGTTGTATTGTCA+GGG + chr4_4:23770778-23770797 None:intergenic 25.0%
!!! AAAACATTTGTTGTATTGTC+AGG + chr4_4:23770779-23770798 None:intergenic 25.0%
AGTAGTAGTAGTATTATTGG+GGG + chr4_4:23767733-23767752 None:intergenic 30.0%
CAGTAGTAGTAGTATTATTG+GGG + chr4_4:23767734-23767753 None:intergenic 30.0%
CCAGTAGTAGTAGTATTATT+GGG + chr4_4:23767735-23767754 None:intergenic 30.0%
CAACTGCAACCTTAATATAA+GGG + chr4_4:23768314-23768333 None:intergenic 30.0%
ACAACTGCAACCTTAATATA+AGG + chr4_4:23768315-23768334 None:intergenic 30.0%
TTATATTAAGGTTGCAGTTG+TGG - chr4_4:23768314-23768333 Msa0675230:intron 30.0%
TCCGTGCTTCATAATTATAT+TGG - chr4_4:23768485-23768504 Msa0675230:intron 30.0%
! TTAGCTGATGTTGGAATTTT+AGG - chr4_4:23768677-23768696 Msa0675230:intron 30.0%
AACCACAACACAAATTAAGA+CGG + chr4_4:23768830-23768849 None:intergenic 30.0%
!!! ATTTTTTGAATTCGGATGTG+AGG - chr4_4:23768941-23768960 Msa0675230:CDS 30.0%
! TGTGTTTTGTATTCAATTGC+TGG - chr4_4:23769008-23769027 Msa0675230:CDS 30.0%
AACAAACTAGAAATTGAGCT+AGG - chr4_4:23769847-23769866 Msa0675230:intron 30.0%
TATTCTCATCTTCAGAAACT+TGG + chr4_4:23769882-23769901 None:intergenic 30.0%
GGATTATATGGAAACAAAGA+TGG + chr4_4:23769919-23769938 None:intergenic 30.0%
! TGTAGCATTTTCGGATTATA+TGG + chr4_4:23769931-23769950 None:intergenic 30.0%
ATATAATCCGAAAATGCTAC+AGG - chr4_4:23769930-23769949 Msa0675230:intron 30.0%
!! TTATGTCGATAGCTTTGTTA+AGG - chr4_4:23770467-23770486 Msa0675230:intron 30.0%
GATATCTGCATGATGTTATT+CGG - chr4_4:23770575-23770594 Msa0675230:intron 30.0%
ATATCTGCATGATGTTATTC+GGG - chr4_4:23770576-23770595 Msa0675230:intron 30.0%
TGATAAAGATTTGCGTTTGC+AGG + chr4_4:23767634-23767653 None:intergenic 35.0%
CCCAATAATACTACTACTAC+TGG - chr4_4:23767732-23767751 Msa0675230:three_prime_UTR 35.0%
GCCAGTAGTAGTAGTATTAT+TGG + chr4_4:23767736-23767755 None:intergenic 35.0%
TAAGTTGTGTGAGACTGTTT+AGG + chr4_4:23768223-23768242 None:intergenic 35.0%
!!! GGTTTTAGAAGTCTCAAAAG+CGG + chr4_4:23768293-23768312 None:intergenic 35.0%
TTGTGGTTGTTTATGAAGCA+CGG - chr4_4:23768331-23768350 Msa0675230:intron 35.0%
TTGTTTATGAAGCACGGATA+CGG - chr4_4:23768337-23768356 Msa0675230:intron 35.0%
GATCTCTAATTCTGAATTCC+TGG + chr4_4:23769476-23769495 None:intergenic 35.0%
CCATACCTCATTAGTCATTA+CGG - chr4_4:23769575-23769594 Msa0675230:intron 35.0%
AATGACCGTAATGACTAATG+AGG + chr4_4:23769583-23769602 None:intergenic 35.0%
CATTAGTCATTACGGTCATT+AGG - chr4_4:23769583-23769602 Msa0675230:intron 35.0%
ATAAATCTCAGCATAAGTGC+AGG - chr4_4:23769776-23769795 Msa0675230:intron 35.0%
TAAATCTCAGCATAAGTGCA+GGG - chr4_4:23769777-23769796 Msa0675230:intron 35.0%
CTGAAGATGAGAATATAGAC+TGG - chr4_4:23769887-23769906 Msa0675230:intron 35.0%
! ATTTGAGATGCACTTCATAC+TGG - chr4_4:23770111-23770130 Msa0675230:intron 35.0%
TATCTGCATGATGTTATTCG+GGG - chr4_4:23770577-23770596 Msa0675230:intron 35.0%
CTCGATTACTTCAATGAGTT+TGG + chr4_4:23770828-23770847 None:intergenic 35.0%
TTCTTTCATGCTTTCGATCA+TGG - chr4_4:23770946-23770965 Msa0675230:intron 35.0%
AATTATGTTGCGCCTAACTT+TGG + chr4_4:23771000-23771019 None:intergenic 35.0%
!! CATGTGTAAAAGAGTGTTCA+TGG + chr4_4:23771059-23771078 None:intergenic 35.0%
! GATGCTATCCATGATGATGA+TGG - chr4_4:23767756-23767775 Msa0675230:three_prime_UTR 40.0%
CATCAACACCATCATCATCA+TGG + chr4_4:23767767-23767786 None:intergenic 40.0%
ATGCTCTCTCTTCTCTTCAA+CGG - chr4_4:23767829-23767848 Msa0675230:CDS 40.0%
TCATGGTATAAGGCTCTGTT+TGG - chr4_4:23767951-23767970 Msa0675230:CDS 40.0%
CTCACACAACTTATGTCAGT+AGG - chr4_4:23768230-23768249 Msa0675230:intron 40.0%
CAACTTGGGTCTATTTGGAT+TGG + chr4_4:23768270-23768289 None:intergenic 40.0%
!! TGCCGTCTTAATTTGTGTTG+TGG - chr4_4:23768825-23768844 Msa0675230:CDS 40.0%
! AAGTTTGCTCACTGCAATGT+TGG - chr4_4:23768899-23768918 Msa0675230:CDS 40.0%
! CTGAAGTGTCAGAGATACAT+AGG + chr4_4:23769119-23769138 None:intergenic 40.0%
CTATGTATCTCTGACACTTC+AGG - chr4_4:23769117-23769136 Msa0675230:intron 40.0%
! ACAAAGTGTCAGTGTTGTGT+TGG + chr4_4:23769163-23769182 None:intergenic 40.0%
AACACAACACTGACACTTTG+TGG - chr4_4:23769162-23769181 Msa0675230:intron 40.0%
ACAGACACTTAACACTGAAC+AGG + chr4_4:23769243-23769262 None:intergenic 40.0%
GCACTGAAATGCTTGCAAAA+TGG + chr4_4:23769381-23769400 None:intergenic 40.0%
AGCATTTCAGTGCCTAATCA+TGG - chr4_4:23769388-23769407 Msa0675230:intron 40.0%
! CATGTGGTGCATAAGACTTT+TGG + chr4_4:23769440-23769459 None:intergenic 40.0%
CCGTAATGACTAATGAGGTA+TGG + chr4_4:23769578-23769597 None:intergenic 40.0%
TGTTGAAATACCTGTCCCTA+AGG + chr4_4:23769831-23769850 None:intergenic 40.0%
! CCATCATCCTGTAGCATTTT+CGG + chr4_4:23769940-23769959 None:intergenic 40.0%
CTGAAATCAGTAAAGCCTCA+TGG + chr4_4:23770274-23770293 None:intergenic 40.0%
TATCAACCGATGAAGCTGTT+TGG - chr4_4:23770350-23770369 Msa0675230:intron 40.0%
ATCAACCGATGAAGCTGTTT+GGG - chr4_4:23770351-23770370 Msa0675230:intron 40.0%
ATGAAGTTGTTCAGCAACTC+AGG - chr4_4:23770389-23770408 Msa0675230:intron 40.0%
TGAAGTTGTTCAGCAACTCA+GGG - chr4_4:23770390-23770409 Msa0675230:intron 40.0%
!! TCGATAGCTTTGTTAAGGTG+TGG - chr4_4:23770472-23770491 Msa0675230:intron 40.0%
! AATTATGACCTACTGGCTGA+TGG - chr4_4:23770673-23770692 Msa0675230:intron 40.0%
! ATTATGACCTACTGGCTGAT+GGG - chr4_4:23770674-23770693 Msa0675230:intron 40.0%
GATGGGCATAAACACTAATC+TGG - chr4_4:23770691-23770710 Msa0675230:intron 40.0%
!! GATCATGGTCTTGTTGATTG+TGG - chr4_4:23770961-23770980 Msa0675230:intron 40.0%
TCATGAACCTCAGTCTGAGA+AGG + chr4_4:23767810-23767829 None:intergenic 45.0%
AGTCTCAAAAGCGGCAACTT+GGG + chr4_4:23768284-23768303 None:intergenic 45.0%
AAGTCTCAAAAGCGGCAACT+TGG + chr4_4:23768285-23768304 None:intergenic 45.0%
TATGAAGCACGGACACTCTT+CGG + chr4_4:23768478-23768497 None:intergenic 45.0%
AACTCAACGACGCCATGATT+AGG + chr4_4:23769403-23769422 None:intergenic 45.0%
TGGTAGCTAAGCTCATCATG+TGG + chr4_4:23769456-23769475 None:intergenic 45.0%
ACATGATGAGCTTAGCTACC+AGG - chr4_4:23769455-23769474 Msa0675230:intron 45.0%
! AGCATAAGTGCAGGGTGTTA+GGG - chr4_4:23769785-23769804 Msa0675230:intron 45.0%
GAAATTGAGCTAGGCAGTCT+TGG - chr4_4:23769856-23769875 Msa0675230:intron 45.0%
CCGAAAATGCTACAGGATGA+TGG - chr4_4:23769937-23769956 Msa0675230:intron 45.0%
ATAGACTGCACCTGAACAGA+GGG + chr4_4:23770006-23770025 None:intergenic 45.0%
AGCTATAGCGCTATGCATAG+CGG - chr4_4:23770155-23770174 Msa0675230:intron 45.0%
GAAGTTGTTCAGCAACTCAG+GGG - chr4_4:23770391-23770410 Msa0675230:intron 45.0%
AAGTTGTTCAGCAACTCAGG+GGG - chr4_4:23770392-23770411 Msa0675230:intron 45.0%
TCTCACGCTCTCTGAATTAG+TGG - chr4_4:23770500-23770519 Msa0675230:intron 45.0%
GCTCTCTGAATTAGTGGTGA+GGG - chr4_4:23770506-23770525 Msa0675230:intron 45.0%
TGCATGATGTTATTCGGGGA+AGG - chr4_4:23770581-23770600 Msa0675230:intron 45.0%
!! CATGGTCTTGTTGATTGTGG+TGG - chr4_4:23770964-23770983 Msa0675230:intron 45.0%
GGTGCATCGTAACCAAAGTT+AGG - chr4_4:23770985-23771004 Msa0675230:intron 45.0%
TTTGCGTTTGCAGGTACGTG+TGG + chr4_4:23767625-23767644 None:intergenic 50.0%
!! GGTGTTGATGAACCCCTCAT+TGG - chr4_4:23767777-23767796 Msa0675230:three_prime_UTR 50.0%
AGAAGGAGGAGGACCAATGA+GGG + chr4_4:23767793-23767812 None:intergenic 50.0%
TGAACCTCAGTCTGAGAAGG+AGG + chr4_4:23767807-23767826 None:intergenic 50.0%
AGCGGCAACTTGGGTCTATT+TGG + chr4_4:23768275-23768294 None:intergenic 50.0%
! TCTTCGGATTAGGCGTGTTC+CGG + chr4_4:23768462-23768481 None:intergenic 50.0%
! CAGCATAAGTGCAGGGTGTT+AGG - chr4_4:23769784-23769803 Msa0675230:intron 50.0%
ATACCTGTCCCTAAGGAGCT+CGG + chr4_4:23769824-23769843 None:intergenic 50.0%
CATAGACTGCACCTGAACAG+AGG + chr4_4:23770007-23770026 None:intergenic 50.0%
CTCTGTTCAGGTGCAGTCTA+TGG - chr4_4:23770005-23770024 Msa0675230:intron 50.0%
AACCGATGAAGCTGTTTGGG+AGG - chr4_4:23770354-23770373 Msa0675230:intron 50.0%
AGCCTCCCAAACAGCTTCAT+CGG + chr4_4:23770359-23770378 None:intergenic 50.0%
CGCTCTCTGAATTAGTGGTG+AGG - chr4_4:23770505-23770524 Msa0675230:intron 50.0%
GTTTATGCCCATCAGCCAGT+AGG + chr4_4:23770684-23770703 None:intergenic 50.0%
GAAGGAGGAGGACCAATGAG+GGG + chr4_4:23767792-23767811 None:intergenic 55.0%
GAGAAGGAGGAGGACCAATG+AGG + chr4_4:23767794-23767813 None:intergenic 55.0%
TCCTCCTCCTTCTCAGACTG+AGG - chr4_4:23767800-23767819 Msa0675230:exon 55.0%
ACCTCAGTCTGAGAAGGAGG+AGG + chr4_4:23767804-23767823 None:intergenic 55.0%
GATTAGGCGTGTTCCGGTGT+CGG + chr4_4:23768456-23768475 None:intergenic 55.0%
GCACGGACACTCTTCGGATT+AGG + chr4_4:23768472-23768491 None:intergenic 55.0%
TTCACGTGCCGAGCTCCTTA+GGG - chr4_4:23769813-23769832 Msa0675230:intron 55.0%
GCAGACTGATCCCTCTGTTC+AGG - chr4_4:23769993-23770012 Msa0675230:intron 55.0%
CTCAGGGGGTCAATATCTGC+AGG - chr4_4:23770406-23770425 Msa0675230:intron 55.0%
GGGGGTCAATATCTGCAGGT+TGG - chr4_4:23770410-23770429 Msa0675230:intron 55.0%
GCACGGATACGGACACGACA+CGG - chr4_4:23768348-23768367 Msa0675230:intron 60.0%
TGTCGAGTCGTGTCCGACAC+CGG - chr4_4:23768440-23768459 Msa0675230:CDS 60.0%
CTTCACGTGCCGAGCTCCTT+AGG - chr4_4:23769812-23769831 Msa0675230:intron 60.0%
AGGAGCTCGGCACGTGAAGC+AGG + chr4_4:23769811-23769830 None:intergenic 65.0%
GTGCCGAGCTCCTTAGGGAC+AGG - chr4_4:23769818-23769837 Msa0675230:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 23767597 23771217 23767597 ID=Msa0675230;Name=Msa0675230
chr4_4 mRNA 23767597 23771217 23767597 ID=Msa0675230-mRNA-1;Parent=Msa0675230;Name=Msa0675230-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.66|0.5|1|1|1|4|211|307
chr4_4 exon 23767597 23768085 23767597 ID=Msa0675230-mRNA-1:exon:6626;Parent=Msa0675230-mRNA-1
chr4_4 exon 23768387 23768480 23768387 ID=Msa0675230-mRNA-1:exon:6625;Parent=Msa0675230-mRNA-1
chr4_4 exon 23768800 23769126 23768800 ID=Msa0675230-mRNA-1:exon:6624;Parent=Msa0675230-mRNA-1
chr4_4 exon 23770993 23771217 23770993 ID=Msa0675230-mRNA-1:exon:6623;Parent=Msa0675230-mRNA-1
chr4_4 CDS 23770993 23771217 23770993 ID=Msa0675230-mRNA-1:cds;Parent=Msa0675230-mRNA-1
chr4_4 CDS 23768800 23769126 23768800 ID=Msa0675230-mRNA-1:cds;Parent=Msa0675230-mRNA-1
chr4_4 CDS 23768387 23768480 23768387 ID=Msa0675230-mRNA-1:cds;Parent=Msa0675230-mRNA-1
chr4_4 CDS 23767808 23768085 23767808 ID=Msa0675230-mRNA-1:cds;Parent=Msa0675230-mRNA-1
chr4_4 three_prime_UTR 23767597 23767807 23767597 ID=Msa0675230-mRNA-1:three_prime_utr;Parent=Msa0675230-mRNA-1
Gene Sequence

>Msa0675230

ATGAAGCTTCGCGGCATTTCATCTTCCACACGTACCTGCAAACGCAAATCTTTATCAACCCCTTTTCCATTATCTTCTTATTCTTCTCATCAAGATAATCCTTTTTCTGTTTTAAACTCTTTTGCTATTAACACCCCCAATAATACTACTACTACTGGCGATGCTATCCATGATGATGATGGTGTTGATGAACCCCTCATTGGTCCTCCTCCTTCTCAGACTGAGCTGTGTTCTCTTGCAAGAATTTCTTGTTCTTTTAAATTCAAACAAAACTATTGTTTAGCAAATTTGGATATTGCATTTGAGATAAGTGATAAATCTCAGCATAAGTGCAGGGTGTTAGGGCCTGCTTCACGTGCCGAGCTCCTTAGGGACAGGTATTTCAACAAACTAGAAATTGAGCTAGGCAGTCTTGGCCAAGTTTCTGAAGATGAGAATATAGACTGGCTAGAACCATCTTTGTTTCCATATAATCCGAAAATGCTACAGGATGATGGATTTGATAGAGTTTATTATGCAATTCACTTATTGCAGACTGATCCCTCTGTTCAGAGATTAGTAAAATCATTATCAACCGATGAAGCTGTTTGGGAGGCTGTTATGAATAATGAAGTTGTTCAGCAACTCAGGGGGTCAATATCTGCAGATCAAGAGCATGATCTTCAGAGTCTAGATGAGATTGCTGATGATGACCCTGACAATACAACAAATGTTTTGATTTGGCTATTAAGTACTGCTAGAGCCAAACTCATTGAAGTAATCGAGAAAATTACCAAGATTGTGATAAAAAAATTTCAGCATTCATTTAAAAAGACAATTGCACATACAAAAGATTCTCAACGCTTTATTGAGAAGCTGAGAGCTTCTTTCATGCTTTCGATCATGGTCTTGTTGATTGTGGTGGTGCATCGTAACCAAAGTTAG

Protein sequence

>Msa0675230

MKLRGISSSTRTCKRKSLSTPFPLSSYSSHQDNPFSVLNSFAINTPNNTTTTGDAIHDDDGVDEPLIGPPPSQTELCSLARISCSFKFKQNYCLANLDIAFEISDKSQHKCRVLGPASRAELLRDRYFNKLEIELGSLGQVSEDENIDWLEPSLFPYNPKMLQDDGFDRVYYAIHLLQTDPSVQRLVKSLSTDEAVWEAVMNNEVVQQLRGSISADQEHDLQSLDEIADDDPDNTTNVLIWLLSTARAKLIEVIEKITKIVIKKFQHSFKKTIAHTKDSQRFIEKLRASFMLSIMVLLIVVVHRNQS*