AlfalfaGEDB | MS.gene47877

M. sativa cultivar XinJiangDaYe / MS.gene47877

KEGG: K13691
GO: GO:0003674 GO:0003824 GO:0016740 GO:0016757 GO:0016758
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47877.t1	XP_003629941.1	96.5	452	16	0	1	452	9	460	1.60E-256	894.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47877.t1	O22820	52.4	454	198	7	2	450	7	447	1.2e-133	478.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47877.t1	G7L8S7	96.5	452	16	0	1	452	9	460	1.2e-256	894.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene47877	0.861789	8.01E-64	-1.69E-46
MS.gene049171	MS.gene47877	0.923459	2.58E-89	-1.69E-46
MS.gene049173	MS.gene47877	0.834816	2.41E-56	-1.69E-46
MS.gene049217	MS.gene47877	0.848035	7.92E-60	-1.69E-46
MS.gene049222	MS.gene47877	0.88551	7.64E-72	-1.69E-46
MS.gene049232	MS.gene47877	0.808696	2.73E-50	-1.69E-46
MS.gene049257	MS.gene47877	0.82574	3.98E-54	-1.69E-46
MS.gene049285	MS.gene47877	0.898258	6.33E-77	-1.69E-46
MS.gene049320	MS.gene47877	0.872105	4.11E-67	-1.69E-46
MS.gene049427	MS.gene47877	0.809136	2.20E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene27920	MS.gene47877	PPI
MS.gene47877	MS.gene030957	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47877.t1	MTR_8g088560	96.460	452	16	0	1	452	9	460	0.0	908
MS.gene47877.t1	MTR_6g038240	49.220	449	222	3	2	449	11	454	1.47e-159	459
MS.gene47877.t1	MTR_6g038200	49.002	451	224	3	2	451	11	456	1.15e-158	457
MS.gene47877.t1	MTR_6g038220	48.780	451	224	3	2	451	11	455	2.45e-154	446
MS.gene47877.t1	MTR_6g038230	48.559	451	226	3	2	451	11	456	2.85e-154	446
MS.gene47877.t1	MTR_5g035580	46.578	453	233	3	1	452	12	456	1.05e-150	437
MS.gene47877.t1	MTR_6g038300	47.661	449	230	3	2	449	11	455	4.47e-150	435
MS.gene47877.t1	MTR_7g080950	46.000	450	235	3	1	449	5	447	8.60e-148	429
MS.gene47877.t1	MTR_7g080940	46.667	450	232	3	1	449	10	452	7.91e-147	426
MS.gene47877.t1	MTR_5g035560	46.358	453	228	5	1	449	10	451	1.27e-146	427

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene47877.t1	AT2G43840	52.643	454	197	7	2	450	7	447	1.01e-170	487
MS.gene47877.t1	AT2G43840	52.423	454	198	7	2	450	7	447	9.63e-170	484
MS.gene47877.t1	AT2G43820	51.542	454	202	7	2	450	7	447	9.18e-166	474
MS.gene47877.t1	AT2G31790	44.371	453	237	6	2	446	8	453	4.42e-135	397
MS.gene47877.t1	AT1G05675	44.346	451	240	5	2	447	6	450	2.87e-133	392
MS.gene47877.t1	AT1G05680	44.105	458	231	7	2	447	6	450	2.26e-132	390
MS.gene47877.t1	AT2G31750	44.348	460	237	9	2	452	8	457	7.49e-123	367
MS.gene47877.t1	AT2G31750	44.227	459	237	9	2	451	8	456	7.59e-123	365
MS.gene47877.t1	AT1G24100	40.564	461	252	10	2	451	11	460	8.11e-112	337
MS.gene47877.t1	AT4G15480	34.188	468	282	8	1	449	18	478	2.91e-104	319

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Find 101 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGTTAACGTCACAA+TGG	0.689260	4.4:-12525988	MS.gene47877:CDS
AAAGGTTGATCAGTCCACTG+TGG	0.777400	4.4:+12524278	None:intergenic
AAAGTGATGGAAAATGACAT+TGG	0.536596	4.4:-12524155	MS.gene47877:CDS
AAATCATTGTCTTTGTCATT+TGG	0.332954	4.4:+12524659	None:intergenic
AAATGAGTTCAAGTGGAAAA+GGG	0.528479	4.4:-12524427	MS.gene47877:CDS
AAATTGAAGGGTTGAAGGTA+AGG	0.491787	4.4:+12525920	None:intergenic
AAGAGATTGAGAGTTGCATT+AGG	0.380560	4.4:-12524178	MS.gene47877:CDS
AAGTAAAAGGATGGAACTGT+TGG	0.582183	4.4:+12524695	None:intergenic
AAGTCAAATTGAAGGGTTGA+AGG	0.475531	4.4:+12525915	None:intergenic
AAGTGGTTCAAATTTCTTAT+GGG	0.377984	4.4:-12524498	MS.gene47877:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAGTTCAAGTGGAAAA+GGG	-	chr4.4:12525675-12525694	MS.gene47877:CDS	30.0%
AATGAGTTCCTTCAAATTCT+TGG	+	chr4.4:12524296-12524315	None:intergenic	30.0%
AATTTGTAAATGAGCTGAAG+AGG	-	chr4.4:12526059-12526078	MS.gene47877:CDS	30.0%
AGAGTTAAGGTAAATGAGAA+TGG	-	chr4.4:12525887-12525906	MS.gene47877:CDS	30.0%
ATGAATGATATATAAGGTGG+TGG	-	chr4.4:12525346-12525365	MS.gene47877:intron	30.0%
ATTGAAGAAATGAGTTCAAG+TGG	-	chr4.4:12525668-12525687	MS.gene47877:CDS	30.0%
CAAATGAAGGAAATAGCATT+AGG	-	chr4.4:12525572-12525591	MS.gene47877:CDS	30.0%
CAAGAATGATATCTGCTTTA+TGG	+	chr4.4:12524621-12524640	None:intergenic	30.0%
CAGATATGAAGTCAAATTGA+AGG	+	chr4.4:12524198-12524217	None:intergenic	30.0%
CTATGTCCAATATTGACAAT+TGG	-	chr4.4:12525383-12525402	MS.gene47877:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.4	gene	12524037	12526087	12524037	ID=MS.gene47877
chr4.4	mRNA	12524037	12526087	12524037	ID=MS.gene47877.t1;Parent=MS.gene47877
chr4.4	exon	12525455	12526087	12525455	ID=MS.gene47877.t1.exon1;Parent=MS.gene47877.t1
chr4.4	CDS	12525455	12526087	12525455	ID=cds.MS.gene47877.t1;Parent=MS.gene47877.t1
chr4.4	exon	12524037	12524762	12524037	ID=MS.gene47877.t1.exon2;Parent=MS.gene47877.t1
chr4.4	CDS	12524037	12524762	12524037	ID=cds.MS.gene47877.t1;Parent=MS.gene47877.t1

Gene Sequence

>MS.gene47877

ATGCATGTTTTAATGGTTCCATACCCAAGTCAAGGTCACATAAACCCAATGCTTCAATTCAGCAAACGTTTGAGCACAAAAGGAGTTAACGTCACAATGGTCACAACCATTTTCATCTCCAAAACCATGCATCTCCAATCATCATCCTTACCTTCAACCCTTCAATTTGACTTCATATCTGATGGCTATGATGAAGGTGGCTTTGCTCAAGTTGGCAACATATCAACCTATCTATCTCACATGAAAACCATAGGCTCCAAGAATTTGAAGGAACTCATTCAAAAACATAATGTTTCTGATCACCCTATAGATTGTGTAGTATATGACCCTTTTCTTCAATGGGTTTTGGATGTAGCCAAAGAATTTGACTTACTAGGAGCTGCTTTTTTCACTCAAATGTGTGCTGTCAATTACATGTATTATTATGTTTACCATGGACTTTTAAAGCTTCCTATATCTTCAATGCCAATTTCTATGCCAGGGCTTCCTTTGCTTGATCTCAAAGATACCCCTTCCTTTGTTTATGACCCTGGCTTCTATCCTGCTTACTATGAGATGGTTATGAATCAATATTCTAACATCCATAAAGCAGATATCATTCTTGTCAATTCCTTCTACAAGCTAGAAGACCAGGTTTTTTACTCACCTCCTCCTCTTTATATTCCTTATTATGTTTGAAGTTATTTTATCATCAATTCCATAGACCTATGGAAGATTAGTGGGACACATTAGTGTGATCCACTTATTAAAATTGCTTTCACTAATCTATCACTTATGTCTATCTCTCTTAAAAATAAACAATAAATAGAGGGTGGATAAATGAAGCAAACTTAGACTCATAATATATGATACTTCCTCCGATTTTTTCGTAAGAAACAAAAGACATAAATCATCAAGACCATTGACACACATTGAAAACAATTATTTTCATTTAATACTAAATTTAAATTTATTTCATGGATACCCTGTATTAATTACTCTTAATTCCACTAACTTACTTTCTTTTAATATTCTCTCTCACAAATGAAATTTAGCTTCTAACACATTTAAAAATTTGTCCATGTTTCTTATAAAAATGACCAAAAATATTTGACACTTTTATTTCTTATAAAAAAAAACCGTGACCATTTATATGTATATGATCTCTCATCTTACAATCACCATCACATAACAGAATCATGTATCAGCTATTAACCTCATATTTTAATTAATGTGGTAGAGTAGTAATTGTAACGAAATGTAATTATTGATATAAACTGAATTTTGGTAGAGATTTGGTTGAACAAATTATGATCTCATCATTTTCCATATGAATGATATATAAGGTGGTGGATTCTATGTCAAAGCTATGTCCAATATTGACAATTGGGCCAACAGTTCCATCCTTTTACTTGGACAAGGGAGTACCAAATGACAAAGACAATGATTTGAATCTCTTCCAATTAGACTCATCACCTATTGATTGGCTGAATTCAAAGCCTGAAGGGTCAGCTATTTATGTATCATTTGGAAGCATGGTATGCTTTAGCATAGAGCAAATGAAGGAAATAGCATTAGGATTATTAGGAAGTGGTTCAAATTTCTTATGGGTAATCCCTAATATGGAGAAAAAGAATATCTCAAAAGAGTTGATTGAAGAAATGAGTTCAAGTGGAAAAGGGTTGGTAGTGAATTGGATACCACAGTTGGAAGTTCTATCTAACAAAGCTATTGGTTGCTTTCTAACACATAGTGGATGGAATTCAACACTTGAAGCATTGTGTTTAGGAGTGCCTATGGTTGCAATACCACAGTGGACTGATCAACCTTTGAATGCAAAATATGTTGAGGATGTGTGGAAAGTGGGAATGAGAGTTAAGGTAAATGAGAATGGGATTGTGACAAAAGAAGAGATTGAGAGTTGCATTAGGAAAGTGATGGAAAATGACATTGGAAGAGAAATGAAAATTAATGCTAAGAAATGGAGAGAATTGGCTATAGAAGCAGTAAGTCATGGTGGCACTTCAGATAACAACATCAATGAATTTGTAAATGAGCTGAAGAGGTCCTAA

Protein sequence

>MS.gene47877.t1

MHVLMVPYPSQGHINPMLQFSKRLSTKGVNVTMVTTIFISKTMHLQSSSLPSTLQFDFISDGYDEGGFAQVGNISTYLSHMKTIGSKNLKELIQKHNVSDHPIDCVVYDPFLQWVLDVAKEFDLLGAAFFTQMCAVNYMYYYVYHGLLKLPISSMPISMPGLPLLDLKDTPSFVYDPGFYPAYYEMVMNQYSNIHKADIILVNSFYKLEDQVVDSMSKLCPILTIGPTVPSFYLDKGVPNDKDNDLNLFQLDSSPIDWLNSKPEGSAIYVSFGSMVCFSIEQMKEIALGLLGSGSNFLWVIPNMEKKNISKELIEEMSSSGKGLVVNWIPQLEVLSNKAIGCFLTHSGWNSTLEALCLGVPMVAIPQWTDQPLNAKYVEDVWKVGMRVKVNENGIVTKEEIESCIRKVMENDIGREMKINAKKWRELAIEAVSHGGTSDNNINEFVNELKRS