AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57295


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57295.t1 MTR_8g090220 98.908 641 7 0 1 641 1 641 0.0 1325
MS.gene57295.t1 MTR_8g090220 98.810 504 6 0 1 504 1 504 0.0 1043
MS.gene57295.t1 MTR_4g093850 41.534 691 291 13 26 641 17 669 1.22e-172 507
MS.gene57295.t1 MTR_2g009340 41.311 702 298 16 13 634 3 670 2.35e-171 504
MS.gene57295.t1 MTR_4g093850 42.713 494 206 8 26 461 17 491 7.97e-130 392
MS.gene57295.t1 MTR_5g016060 34.966 592 302 12 19 577 10 551 5.56e-114 355
MS.gene57295.t1 MTR_1g082690 34.215 567 313 11 24 581 29 544 5.31e-111 345
MS.gene57295.t1 MTR_5g032780 35.081 553 272 9 42 539 16 536 1.49e-104 330
MS.gene57295.t1 MTR_4g022330 33.582 536 287 8 20 527 2 496 2.05e-101 322
MS.gene57295.t1 MTR_1g064360 34.535 527 282 11 41 544 15 501 3.06e-101 320
MS.gene57295.t1 MTR_2g084595 30.283 601 333 11 44 591 15 582 8.05e-101 321
MS.gene57295.t1 MTR_2g018750 33.280 628 317 16 52 633 26 597 1.26e-100 319
MS.gene57295.t1 MTR_4g095430 35.252 556 274 12 52 570 13 519 2.16e-100 318
MS.gene57295.t1 MTR_1g088885 33.562 584 288 13 52 582 36 572 5.73e-100 318
MS.gene57295.t1 MTR_8g078900 34.735 547 253 11 47 529 15 521 2.94e-98 315
MS.gene57295.t1 MTR_5g015790 32.258 589 282 15 38 563 11 545 3.04e-98 314
MS.gene57295.t1 MTR_8g069330 37.076 472 254 7 55 505 29 478 3.70e-96 307
MS.gene57295.t1 MTR_1g014070 32.364 550 270 12 46 546 21 517 4.60e-96 308
MS.gene57295.t1 MTR_7g108290 34.068 590 280 15 52 582 36 575 6.00e-96 309
MS.gene57295.t1 MTR_1g106430 32.286 573 293 15 42 563 18 546 1.04e-95 307
MS.gene57295.t1 MTR_1g094850 30.556 612 320 12 52 611 26 584 9.09e-95 304
MS.gene57295.t1 MTR_8g078900 35.094 530 240 11 64 529 2 491 2.10e-94 304
MS.gene57295.t1 MTR_8g078900 36.765 476 216 9 99 529 46 481 1.61e-93 301
MS.gene57295.t1 MTR_7g073980 35.029 511 268 9 42 527 23 494 1.76e-93 301
MS.gene57295.t1 MTR_3g062540 31.343 603 343 14 52 641 24 568 1.95e-89 289
MS.gene57295.t1 MTR_4g134210 32.961 537 301 11 45 551 19 526 2.37e-87 285
MS.gene57295.t1 MTR_5g075640 32.203 531 312 8 52 572 25 517 6.49e-86 280
MS.gene57295.t1 MTR_5g016060 34.937 478 240 9 129 577 2 437 7.22e-86 278
MS.gene57295.t1 MTR_3g062540 31.218 583 330 14 72 641 2 526 4.88e-83 271
MS.gene57295.t1 MTR_2g048390 33.763 465 245 8 37 460 10 452 1.70e-81 265
MS.gene57295.t1 MTR_2g027410 31.029 593 329 14 35 598 8 549 3.62e-80 265
MS.gene57295.t1 MTR_5g075640 31.898 511 300 8 72 572 2 474 2.00e-78 259
MS.gene57295.t1 MTR_2g084595 30.837 454 256 7 44 461 15 446 1.98e-77 254
MS.gene57295.t1 MTR_8g078900 33.194 479 227 10 47 461 15 464 5.66e-75 248
MS.gene57295.t1 MTR_8g078900 35.294 408 190 8 99 461 46 424 1.27e-70 235
MS.gene57295.t1 MTR_2g027410 30.593 523 293 11 100 598 1 477 1.30e-68 232
MS.gene57295.t1 MTR_4g011530 36.364 297 154 5 215 508 46 310 8.54e-61 209
MS.gene57295.t1 MTR_2g102730 36.859 312 153 7 215 523 24 294 9.83e-58 201
MS.gene57295.t1 MTR_4g074190 26.376 527 279 12 95 570 3 471 1.96e-46 172
MS.gene57295.t1 MTR_4g074190 26.376 527 279 12 95 570 49 517 4.59e-46 171
MS.gene57295.t1 MTR_1g035720 25.440 511 268 16 55 510 6 458 1.70e-42 161
MS.gene57295.t1 MTR_4g045767 24.030 541 321 12 97 597 50 540 2.87e-39 152
MS.gene57295.t1 MTR_4g074190 25.359 418 213 9 95 462 49 417 1.18e-34 137
MS.gene57295.t1 MTR_1g105870 30.841 214 118 5 59 259 38 234 5.74e-28 114
MS.gene57295.t1 MTR_2g010890 23.060 464 265 14 119 553 1 401 2.58e-26 112
MS.gene57295.t1 MTR_2g048375 27.329 161 94 3 477 627 1 148 3.40e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57295.t1 AT5G10250 57.853 624 239 8 22 641 19 622 0.0 696
MS.gene57295.t1 AT5G10250 56.731 624 231 8 22 641 19 607 0.0 676
MS.gene57295.t1 AT5G64330 40.657 578 188 9 69 527 10 551 3.82e-140 422
MS.gene57295.t1 AT5G67385 36.640 494 252 8 52 525 25 477 5.19e-108 338
MS.gene57295.t1 AT5G48800 34.160 524 258 6 34 527 23 489 2.53e-101 322
MS.gene57295.t1 AT1G03010 33.981 618 296 15 52 606 9 577 7.37e-101 320
MS.gene57295.t1 AT1G03010 34.068 590 287 12 52 582 36 582 1.54e-100 320
MS.gene57295.t1 AT5G03250 33.388 605 307 15 54 610 28 584 1.80e-100 318
MS.gene57295.t1 AT1G03010 33.550 614 304 13 52 606 35 603 2.99e-100 319
MS.gene57295.t1 AT5G67385 36.786 473 238 8 73 525 1 432 7.84e-100 316
MS.gene57295.t1 AT5G67385 36.786 473 238 8 73 525 1 432 7.84e-100 316
MS.gene57295.t1 AT5G67385 36.786 473 238 8 73 525 1 432 7.84e-100 316
MS.gene57295.t1 AT5G67385 36.786 473 238 8 73 525 1 432 7.84e-100 316
MS.gene57295.t1 AT1G30440 33.397 527 271 8 47 527 21 513 1.05e-99 319
MS.gene57295.t1 AT5G13600 32.177 634 319 18 44 626 18 591 3.32e-99 315
MS.gene57295.t1 AT2G47860 32.823 588 286 11 52 582 37 572 2.75e-97 311
MS.gene57295.t1 AT5G67440 35.108 507 248 11 46 522 21 476 5.86e-97 309
MS.gene57295.t1 AT5G67440 35.108 507 248 11 46 522 21 476 5.86e-97 309
MS.gene57295.t1 AT3G44820 31.208 596 320 13 47 582 18 583 4.49e-94 303
MS.gene57295.t1 AT2G47860 32.455 607 286 13 52 582 37 595 6.79e-94 303
MS.gene57295.t1 AT3G49970 35.512 459 247 10 60 516 2 413 9.47e-94 299
MS.gene57295.t1 AT3G49970 35.512 459 247 10 60 516 2 413 9.47e-94 299
MS.gene57295.t1 AT2G14820 33.087 541 263 12 38 532 11 498 3.60e-93 301
MS.gene57295.t1 AT2G14820 33.087 541 263 12 38 532 11 498 3.60e-93 301
MS.gene57295.t1 AT3G08570 32.743 565 290 11 52 572 34 552 1.17e-92 299
MS.gene57295.t1 AT1G67900 32.689 569 278 10 42 551 16 538 5.93e-92 297
MS.gene57295.t1 AT1G67900 32.689 569 278 10 42 551 16 538 5.93e-92 297
MS.gene57295.t1 AT1G67900 32.689 569 278 10 42 551 16 538 5.93e-92 297
MS.gene57295.t1 AT1G67900 32.689 569 278 10 42 551 16 538 5.93e-92 297
MS.gene57295.t1 AT1G67900 32.689 569 278 10 42 551 16 538 5.93e-92 297
MS.gene57295.t1 AT1G67900 32.689 569 278 10 42 551 16 538 5.93e-92 297
MS.gene57295.t1 AT5G67440 34.908 487 236 11 66 522 4 439 1.43e-90 291
MS.gene57295.t1 AT2G30520 33.878 490 273 9 52 531 30 478 6.73e-90 291
MS.gene57295.t1 AT3G50840 30.693 606 348 12 47 630 11 566 1.33e-89 290
MS.gene57295.t1 AT3G08660 30.795 591 321 13 52 616 34 562 3.09e-89 289
MS.gene57295.t1 AT5G66560 32.389 565 255 12 47 527 14 535 7.72e-88 288
MS.gene57295.t1 AT4G37590 31.404 570 282 15 38 563 11 515 2.93e-87 284
MS.gene57295.t1 AT5G66560 35.021 474 224 10 95 527 66 496 6.13e-85 279
MS.gene57295.t1 AT5G66560 35.021 474 224 10 95 527 76 506 8.87e-85 279
MS.gene57295.t1 AT3G08660 30.991 555 297 11 88 616 8 502 9.73e-85 275
MS.gene57295.t1 AT4G31820 32.525 495 246 12 46 505 21 462 4.41e-84 275
MS.gene57295.t1 AT3G26490 32.486 551 249 11 43 526 17 511 1.17e-83 275
MS.gene57295.t1 AT3G26490 32.486 551 249 11 43 526 17 511 1.17e-83 275
MS.gene57295.t1 AT3G26490 32.486 551 249 11 43 526 17 511 1.17e-83 275
MS.gene57295.t1 AT2G30520 33.617 470 261 9 72 531 2 430 2.15e-82 270
MS.gene57295.t1 AT2G30520 33.617 470 261 9 72 531 2 430 2.15e-82 270
MS.gene57295.t1 AT5G47800 32.305 486 274 10 43 505 17 470 3.02e-82 270
MS.gene57295.t1 AT5G47800 32.305 486 274 10 43 505 17 470 3.02e-82 270
MS.gene57295.t1 AT5G47800 32.305 486 274 10 43 505 17 470 3.02e-82 270
MS.gene57295.t1 AT3G50840 31.004 558 313 12 95 630 23 530 7.65e-82 268
MS.gene57295.t1 AT3G50840 31.004 558 313 12 95 630 23 530 7.65e-82 268
MS.gene57295.t1 AT5G47800 32.305 486 274 10 43 505 130 583 7.26e-81 269
MS.gene57295.t1 AT5G64330 40.691 376 146 6 293 617 371 720 1.32e-78 265
MS.gene57295.t1 AT5G64330 43.060 281 111 6 26 262 24 299 5.35e-70 241
MS.gene57295.t1 AT2G23050 31.164 507 260 11 41 526 16 454 8.12e-78 256
MS.gene57295.t1 AT4G31820 33.484 442 207 11 99 505 20 409 5.67e-77 254
MS.gene57295.t1 AT2G47860 33.705 448 219 8 52 461 37 444 2.23e-75 248
MS.gene57295.t1 AT5G03250 31.731 520 260 14 138 610 1 472 2.49e-72 241
MS.gene57295.t1 AT2G47860 33.191 467 219 10 52 461 37 467 5.39e-72 240
MS.gene57295.t1 AT5G64330 44.828 261 97 4 44 262 44 299 2.40e-70 241
MS.gene57295.t1 AT5G64330 46.970 264 87 3 293 527 371 610 8.16e-69 236
MS.gene57295.t1 AT2G47860 31.474 502 239 10 138 582 1 454 7.74e-69 233
MS.gene57295.t1 AT2G47860 31.474 502 239 10 138 582 1 454 7.74e-69 233
MS.gene57295.t1 AT3G08660 31.494 435 235 8 52 468 34 423 7.56e-68 228
MS.gene57295.t1 AT3G26490 31.481 486 221 10 43 461 17 457 3.25e-66 226
MS.gene57295.t1 AT5G66560 30.261 499 232 11 47 461 14 480 1.21e-64 221
MS.gene57295.t1 AT1G52770 32.274 409 215 9 197 583 10 378 1.28e-64 220
MS.gene57295.t1 AT3G19850 29.476 458 234 9 94 508 51 462 6.97e-57 202
MS.gene57295.t1 AT3G15570 34.062 320 161 6 215 523 29 309 9.43e-56 196
MS.gene57295.t1 AT5G48130 27.500 480 267 10 52 505 39 463 1.62e-53 194
MS.gene57295.t1 AT2G23050 30.049 406 199 10 138 526 1 338 5.90e-53 186
MS.gene57295.t1 AT1G50280 27.191 445 255 8 95 505 18 427 1.12e-44 167
MS.gene57295.t1 AT1G50280 27.191 445 255 8 95 505 51 460 1.44e-44 167
MS.gene57295.t1 AT5G17580 25.510 490 291 12 42 505 10 451 3.90e-35 140
MS.gene57295.t1 AT3G03510 26.623 462 259 14 107 560 8 397 4.80e-35 138
MS.gene57295.t1 AT5G17580 26.714 423 246 10 105 505 56 436 1.18e-34 139
MS.gene57295.t1 AT3G22104 25.664 452 248 12 76 496 26 420 2.03e-34 137
MS.gene57295.t1 AT3G22104 24.561 399 217 9 125 496 4 345 1.14e-26 113
MS.gene57295.t1 AT3G22104 24.561 399 217 9 125 496 4 345 1.14e-26 113
MS.gene57295.t1 AT3G22104 24.561 399 217 9 125 496 4 345 1.14e-26 113

Find 130 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTGTCAGACTGACTTTC+AGG 0.132980 4.1:+10270060 None:intergenic
CACAGCATCTTCTAACAATT+TGG 0.179939 4.1:+10268840 None:intergenic
CTCCAGCCTGATAGATTCTT+TGG 0.216318 4.1:+10266514 None:intergenic
GAGGAGGAATTATGCTTATT+AGG 0.225056 4.1:+10268486 None:intergenic
TGATACCTTGTGCACATTAT+AGG 0.232562 4.1:+10269795 None:intergenic
ATTCAATATTAGTAGGCTTT+TGG 0.241298 4.1:-10267995 MS.gene57295:CDS
CATTTGTCGTGCTTTCTTCA+TGG 0.250887 4.1:-10268922 MS.gene57295:CDS
CAGCCTCTAATCTCAAATTC+TGG 0.250919 4.1:-10269136 MS.gene57295:CDS
TGCGGATAATTTCAGCAATT+AGG 0.253941 4.1:-10268706 MS.gene57295:CDS
AACATTGTAATTGAAAGATT+TGG 0.268935 4.1:+10267943 None:intergenic
TTCCCAGAATTTGAGATTAG+AGG 0.277466 4.1:+10269133 None:intergenic
AAGCTGGTGGTTCGATGATT+TGG 0.289085 4.1:-10268753 MS.gene57295:CDS
GACTTTCAGGGTCTTGTGCT+TGG 0.289224 4.1:+10270073 None:intergenic
GCGGATAATTTCAGCAATTA+GGG 0.291903 4.1:-10268705 MS.gene57295:CDS
TTAGAAGGGCTTAGAGGATA+TGG 0.292438 4.1:-10268602 MS.gene57295:CDS
CTCAAGCTTGAAAACTTTCC+AGG 0.304064 4.1:-10269106 MS.gene57295:CDS
GCACATTATAGGTGGTTTCC+TGG 0.315175 4.1:+10269806 None:intergenic
TATCAGGCTGGAGTTTAAAT+TGG 0.321879 4.1:-10266504 MS.gene57295:CDS
TGTCTATAGTTTCAGATGTC+TGG 0.334509 4.1:+10266647 None:intergenic
ACCTGGACAACTGTTCTTAG+AGG 0.338185 4.1:+10267626 None:intergenic
TGCGTTGTATACTTTGGTTC+AGG 0.340379 4.1:+10266760 None:intergenic
ACTTTCAGGGTCTTGTGCTT+GGG 0.351122 4.1:+10270074 None:intergenic
CCTACTAATATTGAATTTCC+CGG 0.364748 4.1:+10268002 None:intergenic
GAGGAGTTAGAAGGGCTTAG+AGG 0.370662 4.1:-10268608 MS.gene57295:CDS
ACAATTCTAAAATTCTGTTA+TGG 0.376842 4.1:-10269064 MS.gene57295:CDS
TGCAGAGTCTTCTACGGTCT+TGG 0.377991 4.1:+10267714 None:intergenic
TTCTACGGTCTTGGTCAGTT+AGG 0.381517 4.1:+10267723 None:intergenic
CCGGGAAATTCAATATTAGT+AGG 0.395757 4.1:-10268002 MS.gene57295:CDS
TTTACCAATGATCTCTGGTT+TGG 0.398294 4.1:+10268673 None:intergenic
GATGCTGCATCCTCACTTGC+GGG 0.402710 4.1:+10268785 None:intergenic
GACAAACCAAAGAATCTATC+AGG 0.413587 4.1:-10266520 MS.gene57295:CDS
ACACGGAGAGCCTTCTTCTC+GGG 0.418325 4.1:+10266380 None:intergenic
TCTAACTCCTCATACATTCC+TGG 0.422868 4.1:+10268620 None:intergenic
GACCTTTAGGTAGGTGTCAA+TGG 0.427446 4.1:+10267858 None:intergenic
TTAATTCCTAGATATCAAAA+TGG 0.429080 4.1:-10268326 MS.gene57295:CDS
AGCCTCTAATCTCAAATTCT+GGG 0.431924 4.1:-10269135 MS.gene57295:CDS
GACACGGAGAGCCTTCTTCT+CGG 0.443418 4.1:+10266379 None:intergenic
TTATCCGAGTTGAAGTCTAT+AGG 0.445995 4.1:+10269037 None:intergenic
TATCCGAGTTGAAGTCTATA+GGG 0.446756 4.1:+10269038 None:intergenic
AGAACCTGCGTTGTATACTT+TGG 0.448430 4.1:+10266754 None:intergenic
CTTGAATTGAAAAGTCTGTT+GGG 0.449484 4.1:+10269830 None:intergenic
TTCTGTCAGACTGACTTTCA+GGG 0.449988 4.1:+10270061 None:intergenic
TCTACGGTCTTGGTCAGTTA+GGG 0.449995 4.1:+10267724 None:intergenic
TCCTTCCATGTAAAACCAAC+AGG 0.451380 4.1:-10266466 MS.gene57295:CDS
ACGCAACTGCAACAAAAGTC+CGG 0.452080 4.1:-10268021 MS.gene57295:CDS
ATACATTTACCAATGATCTC+TGG 0.452219 4.1:+10268668 None:intergenic
AAGTGGAATCAACTCTCAAC+AGG 0.453660 4.1:-10266677 MS.gene57295:CDS
TCTCTAGTTTCACCTCCTGT+TGG 0.456759 4.1:+10266451 None:intergenic
GGAATGTATGAGGAGTTAGA+AGG 0.465676 4.1:-10268617 MS.gene57295:CDS
CTTGGTCAGTTAGGGAAGGA+TGG 0.466551 4.1:+10267732 None:intergenic
AGCTATTGTGACATGTTTGT+TGG 0.475232 4.1:+10270005 None:intergenic
TGAAATGATCGAGTATGTTC+TGG 0.476508 4.1:+10267898 None:intergenic
ACTTGAATTGAAAAGTCTGT+TGG 0.476835 4.1:+10269829 None:intergenic
ATTTCAGCAATTAGGGCAAA+GGG 0.478066 4.1:-10268698 MS.gene57295:CDS
ATATCAAAATGCGGCTACAT+AGG 0.478687 4.1:-10269172 MS.gene57295:CDS
ATCTGCAACAAGAACTTACA+TGG 0.493501 4.1:+10268449 None:intergenic
GCCTCTAAGAACAGTTGTCC+AGG 0.494899 4.1:-10267627 MS.gene57295:intron
GCTATTGTGACATGTTTGTT+GGG 0.495372 4.1:+10270006 None:intergenic
ACGAGTGTGGTTTGGTGATG+TGG 0.497567 4.1:+10266414 None:intergenic
GATGCTGTGATTCTATAGCT+TGG 0.503818 4.1:-10268826 MS.gene57295:CDS
TGTGAGGAAAGCTTCAGTCT+TGG 0.507277 4.1:+10268943 None:intergenic
GGAACCAAACCAGAGATCAT+TGG 0.508422 4.1:-10268677 MS.gene57295:CDS
CATTCCTGGTAGGCATCTCT+TGG 0.509319 4.1:+10268634 None:intergenic
GATCTACGACGAGTGTGGTT+TGG 0.513023 4.1:+10266406 None:intergenic
CTTGTTGCAGATGCTAAAGA+TGG 0.513993 4.1:-10268438 MS.gene57295:CDS
GAAAAGTCTGTTGGGATTCG+AGG 0.514401 4.1:+10269838 None:intergenic
AGCAATGCAAGAGAAGGAAC+CGG 0.515645 4.1:-10266704 MS.gene57295:CDS
CTGTGATTCTATAGCTTGGA+AGG 0.517789 4.1:-10268822 MS.gene57295:CDS
TCAGACCTTGAAAAGAGAGT+TGG 0.522254 4.1:-10268383 MS.gene57295:CDS
CAGGCTGGAGTTTAAATTGG+CGG 0.523456 4.1:-10266501 MS.gene57295:CDS
CGCAACTGCAACAAAAGTCC+GGG 0.523933 4.1:-10268020 MS.gene57295:CDS
TAGAAGGGCTTAGAGGATAT+GGG 0.526409 4.1:-10268601 MS.gene57295:CDS
GTAGATCAGCCCCGAGAAGA+AGG 0.527618 4.1:-10266390 MS.gene57295:CDS
CTTGTGAAAATCTATCTCCA+TGG 0.528028 4.1:-10268874 MS.gene57295:CDS
CCTTGAAAAGAGAGTTGGTA+TGG 0.528846 4.1:-10268378 MS.gene57295:CDS
AACCAAAGAATCTATCAGGC+TGG 0.531250 4.1:-10266516 MS.gene57295:CDS
AGATATCAAAATGGAGGTCA+AGG 0.533332 4.1:-10268317 MS.gene57295:CDS
TTGGTCAGTTAGGGAAGGAT+GGG 0.536654 4.1:+10267733 None:intergenic
AATTTCAGCAATTAGGGCAA+AGG 0.537477 4.1:-10268699 MS.gene57295:CDS
AAAAGTCTGTTGGGATTCGA+GGG 0.537749 4.1:+10269839 None:intergenic
TATGCCAAGAGATGCCTACC+AGG 0.548221 4.1:-10268638 MS.gene57295:CDS
AAACATGAAATCACTTCAAG+TGG 0.548709 4.1:-10270097 None:intergenic
AGATGCTGCATCCTCACTTG+CGG 0.555801 4.1:+10268784 None:intergenic
TTGTGAAAATCTATCTCCAT+GGG 0.559597 4.1:-10268873 MS.gene57295:CDS
TAAAAGGCTGACCTTTAGGT+AGG 0.562453 4.1:+10267849 None:intergenic
GAGAGCAGCAATGCAAGAGA+AGG 0.563979 4.1:-10266710 MS.gene57295:CDS
GCAGTAATTCAGCTAAGACT+TGG 0.571771 4.1:+10267920 None:intergenic
ATGACTGAAGAACTAGAAGA+TGG 0.572238 4.1:-10268977 MS.gene57295:CDS
GATCTGTTGCAACTTCAGCT+AGG 0.573474 4.1:+10267965 None:intergenic
CAGCATCTAATCAAGAAAGC+TGG 0.575400 4.1:-10268769 MS.gene57295:CDS
ATGCCTACCAGGAATGTATG+AGG 0.578553 4.1:-10268627 MS.gene57295:CDS
GTTCTGCAGTTCTACCATGT+TGG 0.579053 4.1:+10266588 None:intergenic
GAGTTGATTCCACTTTGTGC+CGG 0.581941 4.1:+10266685 None:intergenic
CACGGAGAGCCTTCTTCTCG+GGG 0.584375 4.1:+10266381 None:intergenic
TCAAATGTTTCACATCCACC+TGG 0.585855 4.1:+10269088 None:intergenic
AGCCATTGACACCTACCTAA+AGG 0.587167 4.1:-10267860 MS.gene57295:intron
TACCTTGTGCACATTATAGG+TGG 0.591674 4.1:+10269798 None:intergenic
CATGGGACAGCATCTTGTTG+AGG 0.601532 4.1:+10268467 None:intergenic
AGAGAGCACTAGACATAGCA+AGG 0.603854 4.1:-10268531 MS.gene57295:CDS
CGAGTGTGGTTTGGTGATGT+GGG 0.605082 4.1:+10266415 None:intergenic
GGGCTTAGAGGATATGGGCA+TGG 0.605115 4.1:-10268596 MS.gene57295:CDS
GAATGTATGAGGAGTTAGAA+GGG 0.605950 4.1:-10268616 MS.gene57295:CDS
CGGTCTTGGTCAGTTAGGGA+AGG 0.612259 4.1:+10267728 None:intergenic
CGAGAATGTAAAGTCCAACA+TGG 0.615865 4.1:-10266602 MS.gene57295:CDS
CATAAAATGATCAATGCGGA+GGG 0.617020 4.1:+10268727 None:intergenic
GGGACAGCATCTTGTTGAGG+AGG 0.618679 4.1:+10268470 None:intergenic
GAGAAGGAACCGGCACAAAG+TGG 0.620698 4.1:-10266694 MS.gene57295:CDS
ATTCCTAGATATCAAAATGG+AGG 0.624406 4.1:-10268323 MS.gene57295:CDS
AAAATGATCAATGCGGAGGG+TGG 0.627548 4.1:+10268730 None:intergenic
CAAAATGCGGCTACATAGGA+CGG 0.632260 4.1:-10269168 MS.gene57295:CDS
ATGCGGCTACATAGGACGGT+CGG 0.639956 4.1:-10269164 MS.gene57295:CDS
GCATAAAATGATCAATGCGG+AGG 0.642568 4.1:+10268726 None:intergenic
ACAGGAGGTGAAACTAGAGA+TGG 0.647018 4.1:-10266448 MS.gene57295:CDS
ACTCCTCATACATTCCTGGT+AGG 0.653906 4.1:+10268624 None:intergenic
AAGAAAGCACGACAAATGTG+AGG 0.659530 4.1:+10268927 None:intergenic
AAGCTTGAAAACTTTCCAGG+TGG 0.660259 4.1:-10269103 MS.gene57295:CDS
CATCTAATCAAGAAAGCTGG+TGG 0.660897 4.1:-10268766 MS.gene57295:CDS
AACCACCTATAATGTGCACA+AGG 0.667560 4.1:-10269800 MS.gene57295:intron
CCTCCCTATAGACTTCAACT+CGG 0.675286 4.1:-10269041 MS.gene57295:CDS
GGGCTGATCTACGACGAGTG+TGG 0.675575 4.1:+10266401 None:intergenic
CCGAGTTGAAGTCTATAGGG+AGG 0.687521 4.1:+10269041 None:intergenic
TCTGCAACAAGAACTTACAT+GGG 0.692050 4.1:+10268450 None:intergenic
AAAGTCTGTTGGGATTCGAG+GGG 0.692715 4.1:+10269840 None:intergenic
TTCCATGTAAAACCAACAGG+AGG 0.698959 4.1:-10266463 MS.gene57295:CDS
TACCCCTTGATATCAAAATG+CGG 0.703247 4.1:-10269181 MS.gene57295:CDS
TGAACCAAAGTATACAACGC+AGG 0.706992 4.1:-10266758 MS.gene57295:CDS
TCCGCATAAAATGATCAATG+CGG 0.719094 4.1:+10268723 None:intergenic
TATGGTGTTAGAAGATGCTG+AGG 0.726855 4.1:-10268360 MS.gene57295:CDS
CATACTCGATCATTTCACGA+TGG 0.744904 4.1:-10267892 MS.gene57295:CDS
AAGACATAGATGTAGTACAA+CGG 0.746121 4.1:-10268080 MS.gene57295:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATTATCTTATTAAAAA+TGG + chr4.1:10269535-10269554 None:intergenic 10.0%
!! TGTGAAAAATAAAAAATAAC+CGG - chr4.1:10268259-10268278 MS.gene57295:intron 15.0%
!! TTTAGTTGCATAAAATATAA+AGG + chr4.1:10266534-10266553 None:intergenic 15.0%
!!! AACTTAATCTTTTTATATGT+TGG - chr4.1:10267246-10267265 MS.gene57295:intron 15.0%
!!! TTTATATTTTTCCATTTGTA+AGG + chr4.1:10269231-10269250 None:intergenic 15.0%
!! AACATTGTAATTGAAAGATT+TGG + chr4.1:10268528-10268547 None:intergenic 20.0%
!! AATATAAAGGATTCTATTTC+TGG + chr4.1:10266521-10266540 None:intergenic 20.0%
!! ACAAGAAAATAGGAATTAAA+AGG + chr4.1:10268638-10268657 None:intergenic 20.0%
!! TATCTTATTAAAAATGGAGT+TGG + chr4.1:10269529-10269548 None:intergenic 20.0%
!! TTAATTCCTAGATATCAAAA+TGG - chr4.1:10268142-10268161 MS.gene57295:intron 20.0%
!!! AATGATTTTCTGCATTTATA+AGG + chr4.1:10266717-10266736 None:intergenic 20.0%
!!! ACAATTCTAAAATTCTGTTA+TGG - chr4.1:10267404-10267423 MS.gene57295:intron 20.0%
!!! ATATAAAGGATTCTATTTCT+GGG + chr4.1:10266520-10266539 None:intergenic 20.0%
!!! GATTTCTTTTTCAAAGTTAA+AGG + chr4.1:10269104-10269123 None:intergenic 20.0%
!!! TGGTTTTCAAAAAAATTCTA+AGG + chr4.1:10267154-10267173 None:intergenic 20.0%
!!! TTTTATTTCTAAATCACAGT+AGG + chr4.1:10269389-10269408 None:intergenic 20.0%
!!! TTTTTTATTTTTCACAGAGT+TGG + chr4.1:10268255-10268274 None:intergenic 20.0%
! AAAGAAGAAACTTCTTTAGA+AGG - chr4.1:10269167-10269186 MS.gene57295:CDS 25.0%
! AAGATAGAAATTAGAGTCTT+TGG + chr4.1:10268301-10268320 None:intergenic 25.0%
! CCAGAATTAGAATAAAAACA+TGG - chr4.1:10267171-10267190 MS.gene57295:intron 25.0%
! GAAAAATAAAAAATAACCGG+AGG - chr4.1:10268262-10268281 MS.gene57295:intron 25.0%
! GCATAAAAAATGAACATTCA+AGG - chr4.1:10266490-10266509 MS.gene57295:CDS 25.0%
! GGAATTCTTAAAACTCTATT+TGG + chr4.1:10268924-10268943 None:intergenic 25.0%
! TGAATTGAACACAAGAAAAT+AGG + chr4.1:10268648-10268667 None:intergenic 25.0%
!! ATTCAATATTAGTAGGCTTT+TGG - chr4.1:10268473-10268492 MS.gene57295:CDS 25.0%
!! TATTTTCTTGTGTTCAATTC+AGG - chr4.1:10268647-10268666 MS.gene57295:CDS 25.0%
!!! CCATGTTTTTATTCTAATTC+TGG + chr4.1:10267174-10267193 None:intergenic 25.0%
!!! GTCATCATTTTTTTTCTTCA+TGG + chr4.1:10268945-10268964 None:intergenic 25.0%
!!! TATTTTCTCCGTTTGTTTTT+TGG - chr4.1:10266582-10266601 MS.gene57295:CDS 25.0%
AAGACATAGATGTAGTACAA+CGG - chr4.1:10268388-10268407 MS.gene57295:CDS 30.0%
AATTCCACAAAACAACATTG+TGG - chr4.1:10269553-10269572 MS.gene57295:intron 30.0%
ACTTGAATTGAAAAGTCTGT+TGG + chr4.1:10266642-10266661 None:intergenic 30.0%
ATACATTTACCAATGATCTC+TGG + chr4.1:10267803-10267822 None:intergenic 30.0%
ATTCCTAGATATCAAAATGG+AGG - chr4.1:10268145-10268164 MS.gene57295:intron 30.0%
ATTGAAGATCTGAACCAATT+TGG - chr4.1:10269033-10269052 MS.gene57295:CDS 30.0%
CCTACTAATATTGAATTTCC+CGG + chr4.1:10268469-10268488 None:intergenic 30.0%
CTTGAATTGAAAAGTCTGTT+GGG + chr4.1:10266641-10266660 None:intergenic 30.0%
GATTTATACTCCCTATTAAC+AGG + chr4.1:10266883-10266902 None:intergenic 30.0%
GTACAAATGATCCTTACAAA+TGG - chr4.1:10269217-10269236 MS.gene57295:intron 30.0%
GTCACACTGTTGTAATTAAA+AGG - chr4.1:10267193-10267212 MS.gene57295:intron 30.0%
TATCAATGATTGATACTGAC+TGG - chr4.1:10266844-10266863 MS.gene57295:intron 30.0%
TGTATAGAGGAAATACTTTG+CGG + chr4.1:10269344-10269363 None:intergenic 30.0%
TTGAAGATCTGAACCAATTT+GGG - chr4.1:10269034-10269053 MS.gene57295:CDS 30.0%
TTGTGAAAATCTATCTCCAT+GGG - chr4.1:10267595-10267614 MS.gene57295:intron 30.0%
! AAACTTCTTTAGAAGGAAAG+AGG - chr4.1:10269174-10269193 MS.gene57295:CDS 30.0%
! AACTTCTTTAGAAGGAAAGA+GGG - chr4.1:10269175-10269194 MS.gene57295:CDS 30.0%
! ACACAAACTTTTGTGTATAG+AGG + chr4.1:10269357-10269376 None:intergenic 30.0%
! ACTCTATGAGACATGATTTT+GGG + chr4.1:10269295-10269314 None:intergenic 30.0%
! GAATTTTACTGAGCTAAACA+AGG + chr4.1:10266742-10266761 None:intergenic 30.0%
!! TCATTTTTCTCCTGTCATAT+TGG - chr4.1:10268202-10268221 MS.gene57295:intron 30.0%
!! TTATTTTGCAGAGTCTTCTA+CGG + chr4.1:10268763-10268782 None:intergenic 30.0%
AAATGGAGGTCAAGGAAAAA+TGG - chr4.1:10268159-10268178 MS.gene57295:intron 35.0%
AACCAAACAGCAAGACTAAT+TGG - chr4.1:10269249-10269268 MS.gene57295:intron 35.0%
AATGCCAATTCCAATATGAC+AGG + chr4.1:10268215-10268234 None:intergenic 35.0%
AATTTCAGCAATTAGGGCAA+AGG - chr4.1:10267769-10267788 MS.gene57295:intron 35.0%
ACAAAACAACATTGTGGATC+TGG - chr4.1:10269559-10269578 MS.gene57295:intron 35.0%
AGAGCACAATCCTGTTAATA+GGG - chr4.1:10266870-10266889 MS.gene57295:intron 35.0%
AGATATCAAAATGGAGGTCA+AGG - chr4.1:10268151-10268170 MS.gene57295:intron 35.0%
AGCCCAAACCAAAAAACAAA+CGG + chr4.1:10266593-10266612 None:intergenic 35.0%
AGCCTCTAATCTCAAATTCT+GGG - chr4.1:10267333-10267352 MS.gene57295:intron 35.0%
AGCTATTGTGACATGTTTGT+TGG + chr4.1:10266466-10266485 None:intergenic 35.0%
AGTATTTAAGCAGATGCTAG+TGG + chr4.1:10268992-10269011 None:intergenic 35.0%
ATATCAAAATGCGGCTACAT+AGG - chr4.1:10267296-10267315 MS.gene57295:intron 35.0%
ATCATGTCTCATAGAGTGAA+AGG - chr4.1:10269298-10269317 MS.gene57295:intron 35.0%
ATCTGCAACAAGAACTTACA+TGG + chr4.1:10268022-10268041 None:intergenic 35.0%
ATGACTGAAGAACTAGAAGA+TGG - chr4.1:10267491-10267510 MS.gene57295:intron 35.0%
ATTTCAGCAATTAGGGCAAA+GGG - chr4.1:10267770-10267789 MS.gene57295:intron 35.0%
CACAGCATCTTCTAACAATT+TGG + chr4.1:10267631-10267650 None:intergenic 35.0%
CAGAGCTAATATGTCCATAA+TGG - chr4.1:10269663-10269682 MS.gene57295:intron 35.0%
CATAAAATGATCAATGCGGA+GGG + chr4.1:10267744-10267763 None:intergenic 35.0%
CCGGGAAATTCAATATTAGT+AGG - chr4.1:10268466-10268485 MS.gene57295:CDS 35.0%
CTTGTGAAAATCTATCTCCA+TGG - chr4.1:10267594-10267613 MS.gene57295:intron 35.0%
GAATGTATGAGGAGTTAGAA+GGG - chr4.1:10267852-10267871 MS.gene57295:intron 35.0%
GAATTAAAAGGCTGACCTTT+AGG + chr4.1:10268626-10268645 None:intergenic 35.0%
GACAAACCAAAGAATCTATC+AGG - chr4.1:10269948-10269967 MS.gene57295:intron 35.0%
GAGGAGGAATTATGCTTATT+AGG + chr4.1:10267985-10268004 None:intergenic 35.0%
GCGGATAATTTCAGCAATTA+GGG - chr4.1:10267763-10267782 MS.gene57295:intron 35.0%
GCTATTGTGACATGTTTGTT+GGG + chr4.1:10266465-10266484 None:intergenic 35.0%
GGGAAAAATTATCTCAAGAG+AGG - chr4.1:10266986-10267005 MS.gene57295:intron 35.0%
TACCCCTTGATATCAAAATG+CGG - chr4.1:10267287-10267306 MS.gene57295:intron 35.0%
TATCAGGCTGGAGTTTAAAT+TGG - chr4.1:10269964-10269983 MS.gene57295:intron 35.0%
TCATGTCTCATAGAGTGAAA+GGG - chr4.1:10269299-10269318 MS.gene57295:intron 35.0%
TCCGCATAAAATGATCAATG+CGG + chr4.1:10267748-10267767 None:intergenic 35.0%
TCTGCAACAAGAACTTACAT+GGG + chr4.1:10268021-10268040 None:intergenic 35.0%
TGAAATGATCGAGTATGTTC+TGG + chr4.1:10268573-10268592 None:intergenic 35.0%
TGAAGATCTGAACCAATTTG+GGG - chr4.1:10269035-10269054 MS.gene57295:CDS 35.0%
TGATACCTTGTGCACATTAT+AGG + chr4.1:10266676-10266695 None:intergenic 35.0%
TGCGGATAATTTCAGCAATT+AGG - chr4.1:10267762-10267781 MS.gene57295:intron 35.0%
TGTCTATAGTTTCAGATGTC+TGG + chr4.1:10269824-10269843 None:intergenic 35.0%
TTCTCCTGTCATATTGGAAT+TGG - chr4.1:10268208-10268227 MS.gene57295:intron 35.0%
TTTACCAATGATCTCTGGTT+TGG + chr4.1:10267798-10267817 None:intergenic 35.0%
! AAGAGCACAATCCTGTTAAT+AGG - chr4.1:10266869-10266888 MS.gene57295:intron 35.0%
! ACATAGCATCTAAGATAGTG+TGG - chr4.1:10269594-10269613 MS.gene57295:intron 35.0%
! AGACTTTTCAATTCAAGTCC+AGG - chr4.1:10266644-10266663 MS.gene57295:CDS 35.0%
! ATTTGGATATTTTCAGCCCA+TGG + chr4.1:10267614-10267633 None:intergenic 35.0%
! CACTCTATGAGACATGATTT+TGG + chr4.1:10269296-10269315 None:intergenic 35.0%
! CTCTATGAGACATGATTTTG+GGG + chr4.1:10269294-10269313 None:intergenic 35.0%
! TATCCGAGTTGAAGTCTATA+GGG + chr4.1:10267433-10267452 None:intergenic 35.0%
! TTATCCGAGTTGAAGTCTAT+AGG + chr4.1:10267434-10267453 None:intergenic 35.0%
! TTCCCAGAATTTGAGATTAG+AGG + chr4.1:10267338-10267357 None:intergenic 35.0%
!! GATCTTTGGAACTTAGTCTT+CGG - chr4.1:10268876-10268895 MS.gene57295:CDS 35.0%
!! TAGCCGCATTTTGATATCAA+GGG + chr4.1:10267293-10267312 None:intergenic 35.0%
!! TCCGCATTGATCATTTTATG+CGG - chr4.1:10267744-10267763 MS.gene57295:intron 35.0%
!! TGACCTCCATTTTGATATCT+AGG + chr4.1:10268151-10268170 None:intergenic 35.0%
!! TGGACATATTAGCTCTGAAA+AGG + chr4.1:10269660-10269679 None:intergenic 35.0%
!! TGTTTTGCATGCTTTTAAGG+AGG + chr4.1:10267044-10267063 None:intergenic 35.0%
!! TTCCAATTAGTCTTGCTGTT+TGG + chr4.1:10269254-10269273 None:intergenic 35.0%
!!! AGATCCACAATGTTGTTTTG+TGG + chr4.1:10269560-10269579 None:intergenic 35.0%
!!! CTCCGTTTGTTTTTTGGTTT+GGG - chr4.1:10266588-10266607 MS.gene57295:CDS 35.0%
!!! TCTCCGTTTGTTTTTTGGTT+TGG - chr4.1:10266587-10266606 MS.gene57295:CDS 35.0%
!!! TGCTGTTTTGCATGCTTTTA+AGG + chr4.1:10267047-10267066 None:intergenic 35.0%
AAAAGTCTGTTGGGATTCGA+GGG + chr4.1:10266632-10266651 None:intergenic 40.0%
AACACACACACAAACACACT+AGG + chr4.1:10266921-10266940 None:intergenic 40.0%
AACCAAAGAATCTATCAGGC+TGG - chr4.1:10269952-10269971 MS.gene57295:intron 40.0%
AACCACCTATAATGTGCACA+AGG - chr4.1:10266668-10266687 MS.gene57295:CDS 40.0%
AAGCTTGAAAACTTTCCAGG+TGG - chr4.1:10267365-10267384 MS.gene57295:intron 40.0%
AAGTGGAATCAACTCTCAAC+AGG - chr4.1:10269791-10269810 MS.gene57295:intron 40.0%
AGAACCTGCGTTGTATACTT+TGG + chr4.1:10269717-10269736 None:intergenic 40.0%
AGACTAAGTTCCAAAGATCC+AGG + chr4.1:10268875-10268894 None:intergenic 40.0%
AGAGAACATCAGACATGGAT+AGG - chr4.1:10267014-10267033 MS.gene57295:intron 40.0%
ATCATCAGCAGGGTATATGA+GGG - chr4.1:10266773-10266792 MS.gene57295:intron 40.0%
CACAAACACACTAGGAAGAA+AGG + chr4.1:10266913-10266932 None:intergenic 40.0%
CAGCATCTAATCAAGAAAGC+TGG - chr4.1:10267699-10267718 MS.gene57295:CDS 40.0%
CAGCCTCTAATCTCAAATTC+TGG - chr4.1:10267332-10267351 MS.gene57295:intron 40.0%
CATACTCGATCATTTCACGA+TGG - chr4.1:10268576-10268595 MS.gene57295:CDS 40.0%
CATCTAATCAAGAAAGCTGG+TGG - chr4.1:10267702-10267721 MS.gene57295:CDS 40.0%
CATTTGTCGTGCTTTCTTCA+TGG - chr4.1:10267546-10267565 MS.gene57295:intron 40.0%
CCATAATGGTGATTCAGCTT+AGG - chr4.1:10269677-10269696 MS.gene57295:intron 40.0%
CCCTCTTTCTCTATCCAAAA+GGG + chr4.1:10266967-10266986 None:intergenic 40.0%
CCTAAGCTGAATCACCATTA+TGG + chr4.1:10269680-10269699 None:intergenic 40.0%
CCTCTTTCTCTATCCAAAAG+GGG + chr4.1:10266966-10266985 None:intergenic 40.0%
CGAGAATGTAAAGTCCAACA+TGG - chr4.1:10269866-10269885 MS.gene57295:intron 40.0%
CTCAAGCTTGAAAACTTTCC+AGG - chr4.1:10267362-10267381 MS.gene57295:intron 40.0%
CTGTGATTCTATAGCTTGGA+AGG - chr4.1:10267646-10267665 MS.gene57295:CDS 40.0%
CTTGTTGCAGATGCTAAAGA+TGG - chr4.1:10268030-10268049 MS.gene57295:CDS 40.0%
GAAAACATCTGACCCCAAAT+TGG + chr4.1:10269050-10269069 None:intergenic 40.0%
GACTAAGTTCCAAAGATCCA+GGG + chr4.1:10268874-10268893 None:intergenic 40.0%
GAGAACATCAGACATGGATA+GGG - chr4.1:10267015-10267034 MS.gene57295:intron 40.0%
GATGCTGTGATTCTATAGCT+TGG - chr4.1:10267642-10267661 MS.gene57295:CDS 40.0%
GCAGTAATTCAGCTAAGACT+TGG + chr4.1:10268551-10268570 None:intergenic 40.0%
GCATAAAATGATCAATGCGG+AGG + chr4.1:10267745-10267764 None:intergenic 40.0%
GGAATGTATGAGGAGTTAGA+AGG - chr4.1:10267851-10267870 MS.gene57295:intron 40.0%
GGAATTGGCATTAATGCTGA+AGG - chr4.1:10268223-10268242 MS.gene57295:intron 40.0%
TAAAAGGCTGACCTTTAGGT+AGG + chr4.1:10268622-10268641 None:intergenic 40.0%
TACCTTGTGCACATTATAGG+TGG + chr4.1:10266673-10266692 None:intergenic 40.0%
TAGAAGGGCTTAGAGGATAT+GGG - chr4.1:10267867-10267886 MS.gene57295:CDS 40.0%
TAGACAGAGAACATCAGACA+TGG - chr4.1:10267009-10267028 MS.gene57295:intron 40.0%
TATCATCAGCAGGGTATATG+AGG - chr4.1:10266772-10266791 MS.gene57295:CDS 40.0%
TCAAATGTTTCACATCCACC+TGG + chr4.1:10267383-10267402 None:intergenic 40.0%
TCAGACCTTGAAAAGAGAGT+TGG - chr4.1:10268085-10268104 MS.gene57295:CDS 40.0%
TCCAAACAGTATCATCAGCA+GGG - chr4.1:10266763-10266782 MS.gene57295:CDS 40.0%
TCCTTCCATGTAAAACCAAC+AGG - chr4.1:10270002-10270021 MS.gene57295:CDS 40.0%
TCTAACTCCTCATACATTCC+TGG + chr4.1:10267851-10267870 None:intergenic 40.0%
TGAACCAAAGTATACAACGC+AGG - chr4.1:10269710-10269729 MS.gene57295:intron 40.0%
TTAGAAGGGCTTAGAGGATA+TGG - chr4.1:10267866-10267885 MS.gene57295:CDS 40.0%
TTCCAAACAGTATCATCAGC+AGG - chr4.1:10266762-10266781 MS.gene57295:CDS 40.0%
TTCCATGTAAAACCAACAGG+AGG - chr4.1:10270005-10270024 MS.gene57295:CDS 40.0%
! AAGAAAGCACGACAAATGTG+AGG + chr4.1:10267544-10267563 None:intergenic 40.0%
! AGTTTTCCATCTGCATGGAA+GGG + chr4.1:10269126-10269145 None:intergenic 40.0%
! CCATACCAACTCTCTTTTCA+AGG + chr4.1:10268093-10268112 None:intergenic 40.0%
! CCCTTTTGGATAGAGAAAGA+GGG - chr4.1:10266964-10266983 MS.gene57295:intron 40.0%
! CCTTTTGGATAGAGAAAGAG+GGG - chr4.1:10266965-10266984 MS.gene57295:intron 40.0%
! CTTTTGGATAGAGAAAGAGG+GGG - chr4.1:10266966-10266985 MS.gene57295:intron 40.0%
! GTCTTGCATAGTGCAGTTTT+CGG + chr4.1:10268373-10268392 None:intergenic 40.0%
! TAGTTTTCCATCTGCATGGA+AGG + chr4.1:10269127-10269146 None:intergenic 40.0%
! TATGGTGTTAGAAGATGCTG+AGG - chr4.1:10268108-10268127 MS.gene57295:CDS 40.0%
! TCTTGCATAGTGCAGTTTTC+GGG + chr4.1:10268372-10268391 None:intergenic 40.0%
! TGCGTTGTATACTTTGGTTC+AGG + chr4.1:10269711-10269730 None:intergenic 40.0%
! TTCTGTCAGACTGACTTTCA+GGG + chr4.1:10266410-10266429 None:intergenic 40.0%
!! AGCCGCATTTTGATATCAAG+GGG + chr4.1:10267292-10267311 None:intergenic 40.0%
!! ATGAGACATGATTTTGGGGA+GGG + chr4.1:10269290-10269309 None:intergenic 40.0%
!! CCTTGAAAAGAGAGTTGGTA+TGG - chr4.1:10268090-10268109 MS.gene57295:CDS 40.0%
!! GTAGCCGCATTTTGATATCA+AGG + chr4.1:10267294-10267313 None:intergenic 40.0%
!! TATGAGACATGATTTTGGGG+AGG + chr4.1:10269291-10269310 None:intergenic 40.0%
!! TGGTCATTTTCATAAGCCTC+CGG + chr4.1:10268281-10268300 None:intergenic 40.0%
!!! TCACTAGTTTTCCATCTGCA+TGG + chr4.1:10269131-10269150 None:intergenic 40.0%
!!! TCCTGTTGGTTTTACATGGA+AGG + chr4.1:10270006-10270025 None:intergenic 40.0%
!!! TTTTTGGTTTGGGCTTATGC+AGG - chr4.1:10266598-10266617 MS.gene57295:CDS 40.0%
AAAATGATCAATGCGGAGGG+TGG + chr4.1:10267741-10267760 None:intergenic 45.0%
AAAGTCTGTTGGGATTCGAG+GGG + chr4.1:10266631-10266650 None:intergenic 45.0%
AAGATCCAGGGAACTTTACC+TGG + chr4.1:10268862-10268881 None:intergenic 45.0%
AAGCTGGTGGTTCGATGATT+TGG - chr4.1:10267715-10267734 MS.gene57295:CDS 45.0%
ACAGGAGGTGAAACTAGAGA+TGG - chr4.1:10270020-10270039 MS.gene57295:CDS 45.0%
ACCCTGCTGATGATACTGTT+TGG + chr4.1:10266767-10266786 None:intergenic 45.0%
ACCTGGACAACTGTTCTTAG+AGG + chr4.1:10268845-10268864 None:intergenic 45.0%
ACGCAACTGCAACAAAAGTC+CGG - chr4.1:10268447-10268466 MS.gene57295:CDS 45.0%
ACTCCTCATACATTCCTGGT+AGG + chr4.1:10267847-10267866 None:intergenic 45.0%
AGAAATCCCTTCCATGCAGA+TGG - chr4.1:10269117-10269136 MS.gene57295:CDS 45.0%
AGCAATGCAAGAGAAGGAAC+CGG - chr4.1:10269764-10269783 MS.gene57295:intron 45.0%
AGCCATTGACACCTACCTAA+AGG - chr4.1:10268608-10268627 MS.gene57295:CDS 45.0%
ATGCCTACCAGGAATGTATG+AGG - chr4.1:10267841-10267860 MS.gene57295:intron 45.0%
CAAAATGCGGCTACATAGGA+CGG - chr4.1:10267300-10267319 MS.gene57295:intron 45.0%
CAGGCTGGAGTTTAAATTGG+CGG - chr4.1:10269967-10269986 MS.gene57295:intron 45.0%
CCCCTCTTTCTCTATCCAAA+AGG + chr4.1:10266968-10266987 None:intergenic 45.0%
CCTCCCTATAGACTTCAACT+CGG - chr4.1:10267427-10267446 MS.gene57295:intron 45.0%
CTCCAGCCTGATAGATTCTT+TGG + chr4.1:10269957-10269976 None:intergenic 45.0%
CTTTCTCTATCCAAAAGGGG+TGG + chr4.1:10266963-10266982 None:intergenic 45.0%
GAAAAGTCTGTTGGGATTCG+AGG + chr4.1:10266633-10266652 None:intergenic 45.0%
GACCTTTAGGTAGGTGTCAA+TGG + chr4.1:10268613-10268632 None:intergenic 45.0%
GATCTGTTGCAACTTCAGCT+AGG + chr4.1:10268506-10268525 None:intergenic 45.0%
GCACATTATAGGTGGTTTCC+TGG + chr4.1:10266665-10266684 None:intergenic 45.0%
GGAACCAAACCAGAGATCAT+TGG - chr4.1:10267791-10267810 MS.gene57295:intron 45.0%
GGTAAAGTTCCCTGGATCTT+TGG - chr4.1:10268862-10268881 MS.gene57295:CDS 45.0%
GTTCTGCAGTTCTACCATGT+TGG + chr4.1:10269883-10269902 None:intergenic 45.0%
TAAAAATGAGCCCGCAAGTG+AGG - chr4.1:10267673-10267692 MS.gene57295:CDS 45.0%
TCTACGGTCTTGGTCAGTTA+GGG + chr4.1:10268747-10268766 None:intergenic 45.0%
TGTGAGGAAAGCTTCAGTCT+TGG + chr4.1:10267528-10267547 None:intergenic 45.0%
TTCTACGGTCTTGGTCAGTT+AGG + chr4.1:10268748-10268767 None:intergenic 45.0%
TTGGTCAGTTAGGGAAGGAT+GGG + chr4.1:10268738-10268757 None:intergenic 45.0%
! ACTTTCAGGGTCTTGTGCTT+GGG + chr4.1:10266397-10266416 None:intergenic 45.0%
! AGCATCTAAGATAGTGTGGC+AGG - chr4.1:10269598-10269617 MS.gene57295:intron 45.0%
! CCCCTTTTGGATAGAGAAAG+AGG - chr4.1:10266963-10266982 MS.gene57295:intron 45.0%
! GAGTTGATTCCACTTTGTGC+CGG + chr4.1:10269786-10269805 None:intergenic 45.0%
! GTTCTGTCAGACTGACTTTC+AGG + chr4.1:10266411-10266430 None:intergenic 45.0%
! TCTCTAGTTTCACCTCCTGT+TGG + chr4.1:10270020-10270039 None:intergenic 45.0%
!! AGAGAGCACTAGACATAGCA+AGG - chr4.1:10267937-10267956 MS.gene57295:CDS 45.0%
!!! CACCTCCTGTTGGTTTTACA+TGG + chr4.1:10270010-10270029 None:intergenic 45.0%
!!! GTGCAGTTTTCGGGTGAATT+AGG + chr4.1:10268363-10268382 None:intergenic 45.0%
AGATGCTGCATCCTCACTTG+CGG + chr4.1:10267687-10267706 None:intergenic 50.0%
CATGGGACAGCATCTTGTTG+AGG + chr4.1:10268004-10268023 None:intergenic 50.0%
CATTCCTGGTAGGCATCTCT+TGG + chr4.1:10267837-10267856 None:intergenic 50.0%
CGCAACTGCAACAAAAGTCC+GGG - chr4.1:10268448-10268467 MS.gene57295:CDS 50.0%
CTCTATCCAAAAGGGGTGGT+GGG + chr4.1:10266959-10266978 None:intergenic 50.0%
CTTGGTCAGTTAGGGAAGGA+TGG + chr4.1:10268739-10268758 None:intergenic 50.0%
GAGAGCAGCAATGCAAGAGA+AGG - chr4.1:10269758-10269777 MS.gene57295:intron 50.0%
GAGGAGTTAGAAGGGCTTAG+AGG - chr4.1:10267860-10267879 MS.gene57295:intron 50.0%
GATCTACGACGAGTGTGGTT+TGG + chr4.1:10270065-10270084 None:intergenic 50.0%
GTTGTCCAGGTAAAGTTCCC+TGG - chr4.1:10268854-10268873 MS.gene57295:CDS 50.0%
TATGCCAAGAGATGCCTACC+AGG - chr4.1:10267830-10267849 MS.gene57295:intron 50.0%
TCTATCCAAAAGGGGTGGTG+GGG + chr4.1:10266958-10266977 None:intergenic 50.0%
TCTCTATCCAAAAGGGGTGG+TGG + chr4.1:10266960-10266979 None:intergenic 50.0%
TGCAGAGTCTTCTACGGTCT+TGG + chr4.1:10268757-10268776 None:intergenic 50.0%
! CCGAGTTGAAGTCTATAGGG+AGG + chr4.1:10267430-10267449 None:intergenic 50.0%
! GACTTTCAGGGTCTTGTGCT+TGG + chr4.1:10266398-10266417 None:intergenic 50.0%
! GCCTCTAAGAACAGTTGTCC+AGG - chr4.1:10268841-10268860 MS.gene57295:CDS 50.0%
!! ACGAGTGTGGTTTGGTGATG+TGG + chr4.1:10270057-10270076 None:intergenic 50.0%
!! CGAGTGTGGTTTGGTGATGT+GGG + chr4.1:10270056-10270075 None:intergenic 50.0%
ACACGGAGAGCCTTCTTCTC+GGG + chr4.1:10270091-10270110 None:intergenic 55.0%
ATGCGGCTACATAGGACGGT+CGG - chr4.1:10267304-10267323 MS.gene57295:intron 55.0%
CGGTCTTGGTCAGTTAGGGA+AGG + chr4.1:10268743-10268762 None:intergenic 55.0%
GACACGGAGAGCCTTCTTCT+CGG + chr4.1:10270092-10270111 None:intergenic 55.0%
GAGAAGGAACCGGCACAAAG+TGG - chr4.1:10269774-10269793 MS.gene57295:intron 55.0%
GATGCTGCATCCTCACTTGC+GGG + chr4.1:10267686-10267705 None:intergenic 55.0%
GGGACAGCATCTTGTTGAGG+AGG + chr4.1:10268001-10268020 None:intergenic 55.0%
GGGCTTAGAGGATATGGGCA+TGG - chr4.1:10267872-10267891 MS.gene57295:CDS 55.0%
GTAGATCAGCCCCGAGAAGA+AGG - chr4.1:10270078-10270097 MS.gene57295:CDS 55.0%
CACGGAGAGCCTTCTTCTCG+GGG + chr4.1:10270090-10270109 None:intergenic 60.0%
GGGCTGATCTACGACGAGTG+TGG + chr4.1:10270070-10270089 None:intergenic 60.0%
!! ATCCAAAAGGGGTGGTGGGG+TGG + chr4.1:10266955-10266974 None:intergenic 60.0%
!! TCCAAAAGGGGTGGTGGGGT+GGG + chr4.1:10266954-10266973 None:intergenic 60.0%
!! CCAAAAGGGGTGGTGGGGTG+GGG + chr4.1:10266953-10266972 None:intergenic 65.0%
! CCCCACCCCACCACCCCTTT+TGG - chr4.1:10266950-10266969 MS.gene57295:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 10266375 10270115 10266375 ID=MS.gene57295
chr4.1 mRNA 10266375 10270115 10266375 ID=MS.gene57295.t1;Parent=MS.gene57295
chr4.1 exon 10269979 10270115 10269979 ID=MS.gene57295.t1.exon1;Parent=MS.gene57295.t1
chr4.1 CDS 10269979 10270115 10269979 ID=cds.MS.gene57295.t1;Parent=MS.gene57295.t1
chr4.1 exon 10269801 10269870 10269801 ID=MS.gene57295.t1.exon2;Parent=MS.gene57295.t1
chr4.1 CDS 10269801 10269870 10269801 ID=cds.MS.gene57295.t1;Parent=MS.gene57295.t1
chr4.1 exon 10268305 10269203 10268305 ID=MS.gene57295.t1.exon3;Parent=MS.gene57295.t1
chr4.1 CDS 10268305 10269203 10268305 ID=cds.MS.gene57295.t1;Parent=MS.gene57295.t1
chr4.1 exon 10267861 10268134 10267861 ID=MS.gene57295.t1.exon4;Parent=MS.gene57295.t1
chr4.1 CDS 10267861 10268134 10267861 ID=cds.MS.gene57295.t1;Parent=MS.gene57295.t1
chr4.1 exon 10267628 10267756 10267628 ID=MS.gene57295.t1.exon5;Parent=MS.gene57295.t1
chr4.1 CDS 10267628 10267756 10267628 ID=cds.MS.gene57295.t1;Parent=MS.gene57295.t1
chr4.1 exon 10266375 10266791 10266375 ID=MS.gene57295.t1.exon6;Parent=MS.gene57295.t1
chr4.1 CDS 10266375 10266791 10266375 ID=cds.MS.gene57295.t1;Parent=MS.gene57295.t1
Gene Sequence

>MS.gene57295

ATGAAATCACTTCAAGTGGCCCAAGCACAAGACCCTGAAAGTCAGTCTGACAGAACTGAACAAGTTTCAGATAAAAGCATAGTTATTCCCAACAAACATGTCACAATAGCTGATAGCATAAAAAATGAACATTCAAGGTACTCCCAGAAATAGAATCCTTTATATTTTATGCAACTAAAAAGCATAGTTCTTTTTGTATGAATGATTTATTTTCTCCGTTTGTTTTTTGGTTTGGGCTTATGCAGGTTCGTTGCCCCTCGAATCCCAACAGACTTTTCAATTCAAGTCCAGGAAACCACCTATAATGTGCACAAGGTATCAATAAACATCATCATAAATCCTTATAAATGCAGAAAATCATTGACCTTGTTTAGCTCAGTAAAATTCTTCCAAACAGTATCATCAGCAGGGTATATGAGGGACAAGATAATGATATCATAATAACACTGTCTATATTAGTAATCACTCATATCAATGATTGATACTGACTGGTGAAGAGCACAATCCTGTTAATAGGGAGTATAAATCATTTATTCCTTTCTTCCTAGTGTGTTTGTGTGTGTGTTGTGTATCTTCCCCACCCCACCACCCCTTTTGGATAGAGAAAGAGGGGGAAAAATTATCTCAAGAGAGGTAGACAGAGAACATCAGACATGGATAGGGAATCCTCCTTAAAAGCATGCAAAACAGCAGAAACAAAGAGTCAATGTTTTAATTGTGTTTAATGTTTTCAAGATTTTGTTAAAAACTAGAAGAAAAATAAATGTTTTTCTTTTCCTTAGAATTTTTTTGAAAACCAGAATTAGAATAAAAACATGGTCACACTGTTGTAATTAAAAGGCATCAACTGAAAGTAAAAAAAAAAAAAAAAAACTTAATCTTTTTATATGTTGGCTGCTTTTTGTGTAACAGTACCCCTTGATATCAAAATGCGGCTACATAGGACGGTCGGAAGTACAGCCTCTAATCTCAAATTCTGGGAATGTGCTCAAGCTTGAAAACTTTCCAGGTGGATGTGAAACATTTGAAACAATTCTAAAATTCTGTTATGGCCTCCCTATAGACTTCAACTCGGATAATGTAGCTGCACTAAGATGTGCATCAGAATTTCTAGAGATGACTGAAGAACTAGAAGATGGCAATCTCATTTCCAAGACTGAAGCTTTCCTCACATTTGTCGTGCTTTCTTCATGGAAAGACACTGTTACTGTTCTGAAATCTTGTGAAAATCTATCTCCATGGGCTGAAAATATCCAAATTGTTAGAAGATGCTGTGATTCTATAGCTTGGAAGGCTACTAAAAATGAGCCCGCAAGTGAGGATGCAGCATCTAATCAAGAAAGCTGGTGGTTCGATGATTTGGCCACCCTCCGCATTGATCATTTTATGCGGATAATTTCAGCAATTAGGGCAAAGGGAACCAAACCAGAGATCATTGGTAAATGTATCATGCAATATGCCAAGAGATGCCTACCAGGAATGTATGAGGAGTTAGAAGGGCTTAGAGGATATGGGCATGGAAAAAGTAATCTACAGTTCACTATATTTAGCATGAAGAAAGAAGAGAGCACTAGACATAGCAAGGAGCAAACGACTATTATTGAAAGCCTAATAAGCATAATTCCTCCTCAACAAGATGCTGTCCCATGTAAGTTCTTGTTGCAGATGCTAAAGATGGCAATGATGTATTCTGTATCATCAGCTCTCATTTCAGACCTTGAAAAGAGAGTTGGTATGGTGTTAGAAGATGCTGAGGTGAATGATCTCTTAATTCCTAGATATCAAAATGGAGGTCAAGGAAAAATGGTCAAGTGAGTATGCTACAATTCATTTTTCTCCTGTCATATTGGAATTGGCATTAATGCTGAAGGTCAAATCCAACTCTGTGAAAAATAAAAAATAACCGGAGGCTTATGAAAATGACCAAAGACTCTAATTTCTATCTTTTTCTTTGTTCTATTCTTTTGTTTTTCATTTGTAGCATGCCTAATTCACCCGAAAACTGCACTATGCAAGACATAGATGTAGTACAACGGATTGTTGAATACTTCTTGATGCATGAAAAACAGCAAACGCAACTGCAACAAAAGTCCGGGAAATTCAATATTAGTAGGCTTTTGGACAATTACCTAGCTGAAGTTGCAACAGATCCAAATCTTTCAATTACAATGTTCCAAGTCTTAGCTGAATTACTGCCAGAACATACTCGATCATTTCACGATGGTCTATATAGAGCCATTGACACCTACCTAAAGGTCAGCCTTTTAATTCCTATTTTCTTGTGTTCAATTCAGGTTTGAAGTGTTGTAAAAGTGATTTCAAAACAAAGTTTTGACGTTTGATATTGATGTTTCTCTAGACCCATCCTTCCCTAACTGACCAAGACCGTAGAAGACTCTGCAAAATAATGAACTGTGAAAAACTCTCACTTGATGCATGCATACATGCTGCACAAAATGATAGATTGCCTCTAAGAACAGTTGTCCAGGTAAAGTTCCCTGGATCTTTGGAACTTAGTCTTCGGTTACTTTAGCTTCATACAATCACCAAATAGAGTTTTAAGAATTCCATGAAGAAAAAAAATGATGACATTATCATAAAGTACAATTTAGAACCACTAGCATCTGCTTAAATACTTTTGAAAAACACATCAACACAATTGAAGATCTGAACCAATTTGGGGTCAGATGTTTTCTATGATATATTAATAATTGTTTCTTCACAGACCTTTAACTTTGAAAAAGAAATCCCTTCCATGCAGATGGAAAACTAGTGAACTATGATTTTAAATGAAAGAAGAAACTTCTTTAGAAGGAAAGAGGGATCACATAGAAGCAAGACAGTACAAATGATCCTTACAAATGGAAAAATATAAACCAAACAGCAAGACTAATTGGAAAGAGCTCTCAAATCCCTCCCCAAAATCATGTCTCATAGAGTGAAAGGGAAATAGTTGATAGTAAACTCCGCAAAGTATTTCCTCTATACACAAAAGTTTGTGTCTTTAGTTACCTACTGTGATTTAGAAATAAAATTGTCTTGACATTGCAACAAAACAAAATTAGTTTAGAACATCAGTATATAATCTAGAAATGTTGAGATATGATACAATCATGATAAGAAGAGATTCAACAGAGAGAAGAAAATACTTCCAACTCCATTTTTAATAAGATAATTGAATTCCACAAAACAACATTGTGGATCTGGTTCACATTATAGACATAGCATCTAAGATAGTGTGGCAGGATAACACATGATAGTTAAAATCACATAAGTTTTTAACCTTTTCAGAGCTAATATGTCCATAATGGTGATTCAGCTTAGGCATTGTCACCTGAACCAAAGTATACAACGCAGGTTCTATTTGCAGAGCAAGTAAAGATGAGAGCAGCAATGCAAGAGAAGGAACCGGCACAAAGTGGAATCAACTCTCAACAGGATGTAAACCAGACATCTGAAACTATAGACATAAAAACACTCAAAGCAGAACTCGAGAATGTAAAGTCCAACATGGTAGAACTGCAGAACGACTACTTTGAGTTGCAAGAAGAGTATAAAAAGTTAACTAGCAACGACAAACCAAAGAATCTATCAGGCTGGAGTTTAAATTGGCGGAAGATCAAGAAATCCTTCCATGTAAAACCAACAGGAGGTGAAACTAGAGATGGACAAGATATGCCCACATCACCAAACCACACTCGTCGTAGATCAGCCCCGAGAAGAAGGCTCTCCGTGTCTTAA

Protein sequence

>MS.gene57295.t1

MKSLQVAQAQDPESQSDRTEQVSDKSIVIPNKHVTIADSIKNEHSRFVAPRIPTDFSIQVQETTYNVHKYPLISKCGYIGRSEVQPLISNSGNVLKLENFPGGCETFETILKFCYGLPIDFNSDNVAALRCASEFLEMTEELEDGNLISKTEAFLTFVVLSSWKDTVTVLKSCENLSPWAENIQIVRRCCDSIAWKATKNEPASEDAASNQESWWFDDLATLRIDHFMRIISAIRAKGTKPEIIGKCIMQYAKRCLPGMYEELEGLRGYGHGKSNLQFTIFSMKKEESTRHSKEQTTIIESLISIIPPQQDAVPCKFLLQMLKMAMMYSVSSALISDLEKRVGMVLEDAEVNDLLIPRYQNGGQGKMVNMPNSPENCTMQDIDVVQRIVEYFLMHEKQQTQLQQKSGKFNISRLLDNYLAEVATDPNLSITMFQVLAELLPEHTRSFHDGLYRAIDTYLKTHPSLTDQDRRRLCKIMNCEKLSLDACIHAAQNDRLPLRTVVQALSPEPKYTTQVLFAEQVKMRAAMQEKEPAQSGINSQQDVNQTSETIDIKTLKAELENVKSNMVELQNDYFELQEEYKKLTSNDKPKNLSGWSLNWRKIKKSFHVKPTGGETRDGQDMPTSPNHTRRRSAPRRRLSVS