AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92064


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 0 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATAATAA+GGG - 21016:9545-9564 MS.gene92064:intron 0.0%
!! TAATAATAATAATAATAATA+AGG - 21016:9544-9563 MS.gene92064:intron 0.0%
!! AATTAATGTATTTAGTTATT+TGG - 21016:9586-9605 MS.gene92064:intron 10.0%
!! ATTAGTTCAATTAATTAAAT+TGG + 21016:8425-8444 MS.gene92064:intergenic 10.0%
!! CATGATTAATTAAATTTAAA+TGG + 21016:7728-7747 MS.gene92064:intergenic 10.0%
!! CATTTAAATTTAATTAATCA+TGG - 21016:7726-7745 MS.gene92064:intron 10.0%
!! ATTAATTAAATTGGTACATT+TGG + 21016:8416-8435 MS.gene92064:intergenic 15.0%
!! CTAGAAAACATTATAATATA+CGG - 21016:10100-10119 MS.gene92064:CDS 15.0%
!! TTTAAAAAATTAGTTATGCA+GGG + 21016:9412-9431 MS.gene92064:intergenic 15.0%
!! TTTCTGTTTAAATAGAAAAA+AGG + 21016:9105-9124 MS.gene92064:intergenic 15.0%
!!! TTTTAAAAAATTAGTTATGC+AGG + 21016:9413-9432 MS.gene92064:intergenic 15.0%
!! AAAGGTAGGTATTTATAAAA+AGG + 21016:9350-9369 MS.gene92064:intergenic 20.0%
!! AAATAGAAAAAAGGAATGTT+AGG + 21016:9096-9115 MS.gene92064:intergenic 20.0%
!! AAGGTAGGTATTTATAAAAA+GGG + 21016:9349-9368 MS.gene92064:intergenic 20.0%
!! AAGTAATCATAAACTATTGT+CGG - 21016:9962-9981 MS.gene92064:intron 20.0%
!! AGTACCATAACAAATTATTA+TGG + 21016:9048-9067 MS.gene92064:intergenic 20.0%
!! AGTTAATTAGAGTTTAGATT+GGG - 21016:8702-8721 MS.gene92064:intron 20.0%
!! AGTTTAATTATAATCATGGA+GGG - 21016:9924-9943 MS.gene92064:CDS 20.0%
!! TAAAAACAATATCAATCACT+AGG + 21016:8321-8340 MS.gene92064:intergenic 20.0%
!! TATTAAAGAACGAAAACAAA+AGG - 21016:8139-8158 MS.gene92064:intron 20.0%
!! TGTGAAAAAATCACATAATT+CGG - 21016:7505-7524 MS.gene92064:intron 20.0%
!! TTTATAAATACCTACCTTTA+AGG - 21016:9351-9370 MS.gene92064:CDS 20.0%
!!! AAAGAATCAGTTTGTTTTTA+AGG + 21016:11133-11152 MS.gene92064:intergenic 20.0%
!!! AAATATTTTTGGTATTCTCA+TGG - 21016:10855-10874 MS.gene92064:intron 20.0%
!!! AAGAATCAGTTTGTTTTTAA+GGG + 21016:11132-11151 MS.gene92064:intergenic 20.0%
!!! AATATTTTTGGTATTCTCAT+GGG - 21016:10856-10875 MS.gene92064:intron 20.0%
!!! AGTATTTTTCTTTTAATACG+TGG + 21016:9318-9337 MS.gene92064:intergenic 20.0%
!!! CAAATTTTCAGTTTATATCA+TGG + 21016:10496-10515 MS.gene92064:intergenic 20.0%
!!! GTTGTCTAAGTAAATATTTT+TGG - 21016:10844-10863 MS.gene92064:intron 20.0%
!!! TGATTTTGCATAAATTTTTG+CGG + 21016:10214-10233 MS.gene92064:intergenic 20.0%
!!! TGTACCATAATAATTTGTTA+TGG - 21016:9041-9060 MS.gene92064:intron 20.0%
!!! TTTGGTATAATTTTCATTTG+CGG - 21016:8064-8083 MS.gene92064:CDS 20.0%
!!! TTTTTGTCTTAAAGAATTTG+AGG - 21016:10015-10034 MS.gene92064:intron 20.0%
! AATTAGTTGATTGTCAGATA+CGG - 21016:9893-9912 MS.gene92064:intron 25.0%
! ACACAAGTATTATTATCTGA+AGG + 21016:11104-11123 MS.gene92064:intergenic 25.0%
! AGACTCTCAATATAATGTAT+CGG + 21016:8642-8661 MS.gene92064:intergenic 25.0%
! AGCAATATTCTAGATATTTC+TGG - 21016:9466-9485 MS.gene92064:intron 25.0%
! GAAGTAAAAACAATCAATCT+TGG - 21016:7404-7423 MS.gene92064:intron 25.0%
! GAGACTTAAATGTAATAAGA+GGG + 21016:10815-10834 MS.gene92064:intergenic 25.0%
! GAGTTAATTAGAGTTTAGAT+TGG - 21016:8701-8720 MS.gene92064:intron 25.0%
! GAGTTTAATTATAATCATGG+AGG - 21016:9923-9942 MS.gene92064:CDS 25.0%
! GCAAAATTAATAAACACTTG+AGG + 21016:10388-10407 MS.gene92064:intergenic 25.0%
! GTATTTATAAAAAGGGATAG+AGG + 21016:9342-9361 MS.gene92064:intergenic 25.0%
! GTGTTACAATTGTGTAATTT+CGG + 21016:11040-11059 MS.gene92064:intergenic 25.0%
! GTTACTAAATATAACTACCA+TGG - 21016:9704-9723 MS.gene92064:intron 25.0%
! TACCATGGTTAATATATATC+TGG - 21016:9719-9738 MS.gene92064:intron 25.0%
! TAGAAGAGTTTCTGAATTTA+CGG + 21016:8025-8044 MS.gene92064:intergenic 25.0%
! TCGGAGTTTAATTATAATCA+TGG - 21016:9920-9939 MS.gene92064:CDS 25.0%
! TGAGACTTAAATGTAATAAG+AGG + 21016:10816-10835 MS.gene92064:intergenic 25.0%
! TTAAAGAGAAAAGGCAAATT+GGG - 21016:7701-7720 MS.gene92064:intron 25.0%
! TTCTAATCATTAAACTCCTT+TGG + 21016:10594-10613 MS.gene92064:intergenic 25.0%
! TTTAAAGAGAAAAGGCAAAT+TGG - 21016:7700-7719 MS.gene92064:intron 25.0%
!! AAACAAACTGATTCTTTGTT+AGG - 21016:11136-11155 MS.gene92064:intron 25.0%
!! AGTTGAAGATAAGTTGAAAT+TGG - 21016:7243-7262 MS.gene92064:CDS 25.0%
!! CTATTTTCTCAAACTACTAT+TGG - 21016:8912-8931 MS.gene92064:intron 25.0%
!! CTCTTATGGTAATTTTAGAT+AGG - 21016:7818-7837 MS.gene92064:intron 25.0%
!! GATTTTCTAATTTCTACTCA+AGG - 21016:7766-7785 MS.gene92064:intron 25.0%
!! GTTGAAGATAAGTTGAAATT+GGG - 21016:7244-7263 MS.gene92064:CDS 25.0%
!! TGTTTTGTAGTGTATAAACT+CGG + 21016:10076-10095 MS.gene92064:intergenic 25.0%
!!! ATATTTTTGGTATTCTCATG+GGG - 21016:10857-10876 MS.gene92064:intron 25.0%
!!! ATTCAATACAAGTATTGATG+GGG - 21016:7864-7883 MS.gene92064:intron 25.0%
!!! CATTCAATACAAGTATTGAT+GGG - 21016:7863-7882 MS.gene92064:intron 25.0%
!!! CTTTTTCAGATACCAATTAT+AGG - 21016:7673-7692 MS.gene92064:intron 25.0%
!!! TCTTTAAAGCTACCTATAAT+TGG + 21016:7688-7707 MS.gene92064:intergenic 25.0%
AAACTACAGCCTCATTTATA+GGG - 21016:9189-9208 MS.gene92064:intron 30.0%
AATAAGAGGGTTACTTACTT+TGG + 21016:10802-10821 MS.gene92064:intergenic 30.0%
AATCTTACCAAGTACAACAA+AGG - 21016:10668-10687 MS.gene92064:intron 30.0%
ACAATAGTGATATTAGTGAG+AGG + 21016:10746-10765 MS.gene92064:intergenic 30.0%
ACCTAAATACTACAAAAACC+TGG + 21016:9836-9855 MS.gene92064:intergenic 30.0%
AGAAAAGTTGTACCTTTGTT+AGG + 21016:10323-10342 MS.gene92064:intergenic 30.0%
AGTAACAAATCTCAGTGTTA+TGG + 21016:9690-9709 MS.gene92064:intergenic 30.0%
ATTAGTTGATTGTCAGATAC+GGG - 21016:9894-9913 MS.gene92064:intron 30.0%
CATACGCACTTGATATTTAA+TGG - 21016:9762-9781 MS.gene92064:intron 30.0%
CATTAGCACTTGATACTTAA+TGG - 21016:9788-9807 MS.gene92064:intron 30.0%
GAACAAGCTGAAGAATTTAA+AGG - 21016:11221-11240 MS.gene92064:CDS 30.0%
GACCAGATATATATTAACCA+TGG + 21016:9724-9743 MS.gene92064:intergenic 30.0%
GCAAAATCATTATCTTAAGC+AGG - 21016:10225-10244 MS.gene92064:CDS 30.0%
GTAAATTCAGAAACTCTTCT+AGG - 21016:8024-8043 MS.gene92064:intron 30.0%
GTACAATAAAACTTCTACAC+AGG - 21016:10451-10470 MS.gene92064:intron 30.0%
TAAACTACAGCCTCATTTAT+AGG - 21016:9188-9207 MS.gene92064:intron 30.0%
TACACAACAGGTAATAATCA+TGG + 21016:8616-8635 MS.gene92064:intergenic 30.0%
TACCCTGAAAAACAATTCAT+TGG + 21016:8519-8538 MS.gene92064:intergenic 30.0%
TACTACAAAAACCTGGAAAA+TGG + 21016:9829-9848 MS.gene92064:intergenic 30.0%
TATGTGCAATGCAATTTAGA+AGG + 21016:7383-7402 MS.gene92064:intergenic 30.0%
TCATCATCAATCTTCTCTTA+TGG - 21016:7804-7823 MS.gene92064:intron 30.0%
TCATTTGCGGTTATTAATCA+AGG - 21016:8077-8096 MS.gene92064:intron 30.0%
TCGAAAATTAAGCCTGTTAT+TGG - 21016:11299-11318 MS.gene92064:CDS 30.0%
TGAATTATACCGATAGTACT+TGG - 21016:10360-10379 MS.gene92064:intron 30.0%
TGTTCAAAAAGGACTTGTAA+AGG - 21016:8560-8579 MS.gene92064:intron 30.0%
TTTCACATTATTAGCAGTGT+TGG + 21016:7492-7511 MS.gene92064:intergenic 30.0%
! AAGTTTTCTTCTCTGTCTTA+AGG - 21016:8819-8838 MS.gene92064:intron 30.0%
! AATTGCACTTTTAGTCTATC+AGG + 21016:11062-11081 MS.gene92064:intergenic 30.0%
! AATTTGTTCTGTGAGAATCA+CGG - 21016:10634-10653 MS.gene92064:CDS 30.0%
! AGAAATTCCTACCTTTTGAT+GGG - 21016:7617-7636 MS.gene92064:intron 30.0%
! AGGAAGTTGACAAACATTTT+AGG - 21016:7643-7662 MS.gene92064:intron 30.0%
! ATTAAACTCCTTTGGAAACA+AGG + 21016:10586-10605 MS.gene92064:intergenic 30.0%
! CTTACTGGAACAATTTTCAA+TGG - 21016:7326-7345 MS.gene92064:CDS 30.0%
! GAAGAATTTAAAGGTGCATT+GGG - 21016:11230-11249 MS.gene92064:CDS 30.0%
! GAAGGTAAAGCTTACATTTT+TGG - 21016:8046-8065 MS.gene92064:CDS 30.0%
! TAGAAATTCCTACCTTTTGA+TGG - 21016:7616-7635 MS.gene92064:intron 30.0%
! TCCAGGTTTTTGTAGTATTT+AGG - 21016:9832-9851 MS.gene92064:intron 30.0%
! TGAAGAATTTAAAGGTGCAT+TGG - 21016:11229-11248 MS.gene92064:CDS 30.0%
! TGGAACAATTTTCAATGGAA+TGG - 21016:7331-7350 MS.gene92064:intron 30.0%
! TTTACTTGATTTGAAGCCAA+TGG + 21016:9172-9191 MS.gene92064:intergenic 30.0%
!! AAACTATTGTCGGTTTGTTT+GGG - 21016:9972-9991 MS.gene92064:intron 30.0%
!! CACCAATGAATTGTTTTTCA+GGG - 21016:8514-8533 MS.gene92064:intron 30.0%
!! GCATTCAATACAAGTATTGA+TGG - 21016:7862-7881 MS.gene92064:intron 30.0%
!! TAAACTATTGTCGGTTTGTT+TGG - 21016:9971-9990 MS.gene92064:intron 30.0%
!! TACCTTTAAGGTGAATAAGT+GGG - 21016:9363-9382 MS.gene92064:CDS 30.0%
!! TAGGTAGCTTTAAAGAGAAA+AGG - 21016:7692-7711 MS.gene92064:intron 30.0%
!! TCACCAATGAATTGTTTTTC+AGG - 21016:8513-8532 MS.gene92064:intron 30.0%
!! TTCAATACAAGTATTGATGG+GGG - 21016:7865-7884 MS.gene92064:intron 30.0%
!!! CGTGGTTTTGAATAGTAAAA+AGG + 21016:9300-9319 MS.gene92064:intergenic 30.0%
!!! CTCTTTTTTAAGCTTGCTTT+CGG - 21016:7997-8016 MS.gene92064:intron 30.0%
!!! TATTTTTGGTATTCTCATGG+GGG - 21016:10858-10877 MS.gene92064:intron 30.0%
!!! TGTTTTTCAGGGTATATTGA+TGG - 21016:8525-8544 MS.gene92064:intron 30.0%
AACCCACTTATTCACCTTAA+AGG + 21016:9368-9387 MS.gene92064:intergenic 35.0%
AACTTCCTTATCCCATCAAA+AGG + 21016:7631-7650 MS.gene92064:intergenic 35.0%
AAGAAAACCTGTGATGAACT+TGG - 21016:9232-9251 MS.gene92064:CDS 35.0%
AATGCCTTATCTCAGTAAAC+TGG + 21016:8848-8867 MS.gene92064:intergenic 35.0%
AATGGAGTTGGAATTCGTTA+TGG + 21016:10160-10179 MS.gene92064:intergenic 35.0%
AATTAGTTATGCAGGGTATG+AGG + 21016:9405-9424 MS.gene92064:intergenic 35.0%
AATTCGCTCAATTTGAACGT+GGG + 21016:10774-10793 MS.gene92064:intergenic 35.0%
ACAACTTTCATGAATGGAGT+TGG + 21016:10172-10191 MS.gene92064:intergenic 35.0%
AGAAAACCTGTGATGAACTT+GGG - 21016:9233-9252 MS.gene92064:CDS 35.0%
AGGGACTTATAATTAGAGAC+AGG - 21016:9651-9670 MS.gene92064:intron 35.0%
ATGCCTTATCTCAGTAAACT+GGG + 21016:8847-8866 MS.gene92064:intergenic 35.0%
ATGGAGATTGACTAATGAAG+AGG - 21016:11253-11272 MS.gene92064:CDS 35.0%
ATGGAGTTGGAATTCGTTAT+GGG + 21016:10159-10178 MS.gene92064:intergenic 35.0%
CACTTATTCACCTTAAAGGT+AGG + 21016:9364-9383 MS.gene92064:intergenic 35.0%
CTGAAGAAGATCACTGAAAT+AGG - 21016:10422-10441 MS.gene92064:intron 35.0%
GGAAGATTGCTTATATCTCA+GGG - 21016:9607-9626 MS.gene92064:intron 35.0%
GTATGCACAACTTTCATGAA+TGG + 21016:10178-10197 MS.gene92064:intergenic 35.0%
TAATTCGCTCAATTTGAACG+TGG + 21016:10775-10794 MS.gene92064:intergenic 35.0%
TACTATGTAGCTATGAAGCA+CGG - 21016:7438-7457 MS.gene92064:intron 35.0%
TACTCCAGAATTCCTAACAA+AGG - 21016:10308-10327 MS.gene92064:CDS 35.0%
TATCAAGTGCGTATGTTTCA+TGG + 21016:9757-9776 MS.gene92064:intergenic 35.0%
TATTGAGAGTCTTACGAGAT+AGG - 21016:8650-8669 MS.gene92064:intron 35.0%
TCTCAAACTACTATTGGTGT+CGG - 21016:8918-8937 MS.gene92064:intron 35.0%
TGGAAGATTGCTTATATCTC+AGG - 21016:9606-9625 MS.gene92064:intron 35.0%
TGTAACAAGATGCATGCTTA+GGG - 21016:10984-11003 MS.gene92064:intron 35.0%
TGTACCTTTGTTAGGAATTC+TGG + 21016:10315-10334 MS.gene92064:intergenic 35.0%
TTACGAGATAGGATTCAGTT+AGG - 21016:8661-8680 MS.gene92064:intron 35.0%
TTAGAGTTTAGATTGGGAGT+TGG - 21016:8708-8727 MS.gene92064:intron 35.0%
TTCTACAAAGCTATGAAGCA+TGG + 21016:7601-7620 MS.gene92064:intergenic 35.0%
TTGTAACAAGATGCATGCTT+AGG - 21016:10983-11002 MS.gene92064:intron 35.0%
! AAGGTGTCAACAATTGGAAT+TGG - 21016:7280-7299 MS.gene92064:CDS 35.0%
! AATTTAAAGGTGCATTGGGA+TGG - 21016:11234-11253 MS.gene92064:CDS 35.0%
! ATTCAGAAACTCTTCTAGGA+AGG - 21016:8028-8047 MS.gene92064:intron 35.0%
! GAAGATAAGTTGAAATTGGG+TGG - 21016:7247-7266 MS.gene92064:CDS 35.0%
! GTTGGTGTTTCAAACTATAG+TGG - 21016:8585-8604 MS.gene92064:intron 35.0%
! TAATTCCTGCATTTGAAACC+TGG - 21016:11010-11029 MS.gene92064:intron 35.0%
! TCTAATGCCTTTGTTGTACT+TGG + 21016:10678-10697 MS.gene92064:intergenic 35.0%
! TCTTCACACCATTTTCTTCA+GGG + 21016:9216-9235 MS.gene92064:intergenic 35.0%
! TGTTTGGGAGAGTTTTTGTA+GGG - 21016:9987-10006 MS.gene92064:intron 35.0%
! TTCGGTGTAATTGTAAGTGT+TGG - 21016:7523-7542 MS.gene92064:intron 35.0%
! TTCTTCACACCATTTTCTTC+AGG + 21016:9217-9236 MS.gene92064:intergenic 35.0%
! TTGTTTGGGAGAGTTTTTGT+AGG - 21016:9986-10005 MS.gene92064:intron 35.0%
!! CTACCTTTAAGGTGAATAAG+TGG - 21016:9362-9381 MS.gene92064:CDS 35.0%
!! GATTTGAAGGTGTCAACAAT+TGG - 21016:7274-7293 MS.gene92064:CDS 35.0%
!! TACAACAAAGGCATTAGACA+TGG - 21016:10680-10699 MS.gene92064:intron 35.0%
AAAGGACTTGTAAAGGCTGT+TGG - 21016:8567-8586 MS.gene92064:intron 40.0%
AATCACAAGTGTTTGTGCGT+CGG + 21016:8880-8899 MS.gene92064:intergenic 40.0%
ACAATCAAGTCCGTTGTCAT+TGG + 21016:10967-10986 MS.gene92064:intergenic 40.0%
AGGATTTCACCTTGAGCTAT+TGG + 21016:9280-9299 MS.gene92064:intergenic 40.0%
ATTCGCTCAATTTGAACGTG+GGG + 21016:10773-10792 MS.gene92064:intergenic 40.0%
CAACAATTGGAATTGGAGCT+TGG - 21016:7287-7306 MS.gene92064:CDS 40.0%
CAATTAAGCCAATGACCACA+TGG + 21016:10716-10735 MS.gene92064:intergenic 40.0%
CTAGGTGATGCTGTTCAAAA+AGG - 21016:8549-8568 MS.gene92064:intron 40.0%
CTTGAGGAACCAAGTACTAT+CGG + 21016:10372-10391 MS.gene92064:intergenic 40.0%
GATTGTCAGATACGGGAATT+CGG - 21016:9901-9920 MS.gene92064:CDS 40.0%
GCATATTCACCAATAGCTCA+AGG - 21016:9268-9287 MS.gene92064:CDS 40.0%
GCGACTTCAACTTCAACATT+TGG + 21016:8167-8186 MS.gene92064:intergenic 40.0%
GGAAATGTTGTACCAATTCC+TGG - 21016:11185-11204 MS.gene92064:CDS 40.0%
GGAATTCGTTATGGGCATAT+GGG + 21016:10151-10170 MS.gene92064:intergenic 40.0%
GGAGTATAAATTCTACCTCG+AGG + 21016:10294-10313 MS.gene92064:intergenic 40.0%
GGTTCATAGATCATCTGTCT+TGG - 21016:8977-8996 MS.gene92064:intron 40.0%
GTTCCCAGTTTACTGAGATA+AGG - 21016:8841-8860 MS.gene92064:intron 40.0%
TATAGGGTCCCTGAAGAAAA+TGG - 21016:9205-9224 MS.gene92064:intron 40.0%
TATGAAGCATGGACACTCAT+CGG + 21016:7590-7609 MS.gene92064:intergenic 40.0%
TCAACTGGAAAGCCAATAAC+AGG + 21016:11314-11333 MS.gene92064:intergenic 40.0%
TCCTTATCCCATCAAAAGGT+AGG + 21016:7627-7646 MS.gene92064:intergenic 40.0%
TCTTAAGCAGGTGTTCTTAC+TGG - 21016:10237-10256 MS.gene92064:CDS 40.0%
TGCAGCACATGCACTAATAA+TGG + 21016:10904-10923 MS.gene92064:intergenic 40.0%
TGGAATTCGTTATGGGCATA+TGG + 21016:10152-10171 MS.gene92064:intergenic 40.0%
TGGATCTGTATCAGCTTCAT+TGG - 21016:8279-8298 MS.gene92064:intron 40.0%
TGTAATCCCAAGTTCATCAC+AGG + 21016:9242-9261 MS.gene92064:intergenic 40.0%
TTATATCGCCATGTGGTCAT+TGG - 21016:10705-10724 MS.gene92064:intron 40.0%
TTGTGTAATTTCGGTTCTCC+AGG + 21016:11031-11050 MS.gene92064:intergenic 40.0%
! AAGTCATTTCGAGTCGATCA+AGG + 21016:8256-8275 MS.gene92064:intergenic 40.0%
! AGTAAAAGCTGTTGCTTCAG+AGG - 21016:7201-7220 MS.gene92064:CDS 40.0%
! AGTCATTTCGAGTCGATCAA+GGG + 21016:8255-8274 MS.gene92064:intergenic 40.0%
! ATGTATCGGTACTACACAAC+AGG + 21016:8628-8647 MS.gene92064:intergenic 40.0%
! CGATTGAGAATCCATTTTCC+AGG - 21016:9815-9834 MS.gene92064:intron 40.0%
! GTAAAAGCTGTTGCTTCAGA+GGG - 21016:7202-7221 MS.gene92064:CDS 40.0%
! GTTTGGGAGAGTTTTTGTAG+GGG - 21016:9988-10007 MS.gene92064:intron 40.0%
! TCAGGGTATATTGATGGTCT+AGG - 21016:8531-8550 MS.gene92064:intron 40.0%
! TCCTACCTTTTGATGGGATA+AGG - 21016:7623-7642 MS.gene92064:intron 40.0%
!! AAGTAACGCGCTTGTTTTTC+AGG - 21016:8363-8382 MS.gene92064:intron 40.0%
!! AGGTGAATAAGTGGGTTGTT+CGG - 21016:9371-9390 MS.gene92064:intron 40.0%
!! ATTGGGTGGTTCTGATTTGA+AGG - 21016:7261-7280 MS.gene92064:CDS 40.0%
!! CAAGAAGAGAGGTATTCCAT+TGG - 21016:9153-9172 MS.gene92064:intron 40.0%
!! TGTAAGTGTTGGTGTAGTGT+CGG - 21016:7534-7553 MS.gene92064:intron 40.0%
ATCGACACAGCCGAAGTTTA+TGG - 21016:7898-7917 MS.gene92064:intron 45.0%
CACCAACAAATCACTGACAC+CGG + 21016:8958-8977 MS.gene92064:intergenic 45.0%
CTTCAGGGACCCTATAAATG+AGG + 21016:9201-9220 MS.gene92064:intergenic 45.0%
CTTGGGGTGATACTACTTAC+TGG - 21016:7311-7330 MS.gene92064:CDS 45.0%
GCGCACTTAGAACACTTTCA+CGG + 21016:8223-8242 MS.gene92064:intergenic 45.0%
GTATTCTCATGGGGGCAAAA+AGG - 21016:10866-10885 MS.gene92064:intron 45.0%
GTCGACAATGCCAATGACAA+CGG - 21016:10954-10973 MS.gene92064:intron 45.0%
GTGCGTATGTTTCATGGAAG+AGG + 21016:9751-9770 MS.gene92064:intergenic 45.0%
GTTCTCCAGGTTTCAAATGC+AGG + 21016:11018-11037 MS.gene92064:intergenic 45.0%
GTTGTCATTGGCATTGTCGA+CGG + 21016:10955-10974 MS.gene92064:intergenic 45.0%
TATGCACAGCTCAAGAAGAG+AGG - 21016:9142-9161 MS.gene92064:intron 45.0%
TCAGTGATCTTCTTCAGCAG+TGG + 21016:10419-10438 MS.gene92064:intergenic 45.0%
TTGGAATTGGAGCTTGGTCT+TGG - 21016:7293-7312 MS.gene92064:CDS 45.0%
! AACTCCTTTGGAAACAAGGC+AGG + 21016:10582-10601 MS.gene92064:intergenic 45.0%
! AACTTCGGCTGTGTCGATAA+AGG + 21016:7896-7915 MS.gene92064:intergenic 45.0%
! TCATCGGATTAGACGTGTTC+TGG + 21016:7574-7593 MS.gene92064:intergenic 45.0%
! TCGACTCGAAATGACTTCTG+TGG - 21016:8259-8278 MS.gene92064:intron 45.0%
! TGGAATTGGAGCTTGGTCTT+GGG - 21016:7294-7313 MS.gene92064:CDS 45.0%
!! CATGGTGTTATATCGCCATG+TGG - 21016:10698-10717 MS.gene92064:intron 45.0%
!! GGTGAATAAGTGGGTTGTTC+GGG - 21016:9372-9391 MS.gene92064:intron 45.0%
!! GTGAATAAGTGGGTTGTTCG+GGG - 21016:9373-9392 MS.gene92064:intron 45.0%
!! TCATCCTGCCTTGTTTCCAA+AGG - 21016:10575-10594 MS.gene92064:intron 45.0%
!!! GCTGTTTTAGCACCAGGAAT+TGG + 21016:11200-11219 MS.gene92064:intergenic 45.0%
!!! GTTTTTCAGGCCTGGAGTAT+GGG - 21016:8376-8395 MS.gene92064:intron 45.0%
!!! TGTTCTGCTGTTTTAGCACC+AGG + 21016:11206-11225 MS.gene92064:intergenic 45.0%
!!! TGTTTTTCAGGCCTGGAGTA+TGG - 21016:8375-8394 MS.gene92064:intron 45.0%
!!! TTTTTCAGGCCTGGAGTATG+GGG - 21016:8377-8396 MS.gene92064:intron 45.0%
!! ATAATAATAATAATAATAAG+GGG - 21016:9546-9565 MS.gene92064:intron 5.0%
!! TAATTATTTAATATAGTAAA+TGG - 21016:8441-8460 MS.gene92064:intron 5.0%
!!! TTTTTTTTTTTTTTTTGAAA+GGG - 21016:9632-9651 MS.gene92064:intron 5.0%
!!! TTTTTTTTTTTTTTTTTGAA+AGG - 21016:9631-9650 MS.gene92064:intron 5.0%
ACAGCCGAAGTTTATGGCTC+TGG - 21016:7904-7923 MS.gene92064:intron 50.0%
ACTCCACGAAATCCTCCATC+TGG - 21016:10267-10286 MS.gene92064:CDS 50.0%
CACCCCAGAGCCATAAACTT+CGG + 21016:7911-7930 MS.gene92064:intergenic 50.0%
CAGCCGAAGTTTATGGCTCT+GGG - 21016:7905-7924 MS.gene92064:intron 50.0%
CCTGGAGTATGGGGAAATGA+AGG - 21016:8386-8405 MS.gene92064:intron 50.0%
CCTTCATTTCCCCATACTCC+AGG + 21016:8389-8408 MS.gene92064:intergenic 50.0%
CTAAACTGGCTGGTAGCTCA+AGG - 21016:11164-11183 MS.gene92064:CDS 50.0%
CTCCACGAAATCCTCCATCT+GGG - 21016:10268-10287 MS.gene92064:CDS 50.0%
CTTTCACGGCCTAATCTCCA+TGG + 21016:8209-8228 MS.gene92064:intergenic 50.0%
GCATTGTCGACGGTTCACAA+GGG + 21016:10945-10964 MS.gene92064:intergenic 50.0%
GGTAGCTGAGCTACGAAGTT+TGG - 21016:11274-11293 MS.gene92064:CDS 50.0%
GTAGCTATGAAGCACGGACA+CGG - 21016:7444-7463 MS.gene92064:intron 50.0%
! AGCCGAAGTTTATGGCTCTG+GGG - 21016:7906-7925 MS.gene92064:intron 50.0%
! GGGAGAGTTTTTGTAGGGGA+GGG - 21016:9992-10011 MS.gene92064:intron 50.0%
! GTCCGGTGTCAGTGATTTGT+TGG - 21016:8953-8972 MS.gene92064:intron 50.0%
! TGGGAGAGTTTTTGTAGGGG+AGG - 21016:9991-10010 MS.gene92064:intron 50.0%
!! CGGTGTCAGTGATTTGTTGG+TGG - 21016:8956-8975 MS.gene92064:intron 50.0%
!! GGAATTGGAGCTTGGTCTTG+GGG - 21016:7295-7314 MS.gene92064:CDS 50.0%
ATTCTACCTCGAGGCCCAGA+TGG + 21016:10285-10304 MS.gene92064:intergenic 55.0%
CCATGGCAGTGCAGCAAACT+TGG + 21016:8192-8211 MS.gene92064:intergenic 55.0%
GCTGCACTGCCATGGAGATT+AGG - 21016:8197-8216 MS.gene92064:CDS 55.0%
GGCATTGTCGACGGTTCACA+AGG + 21016:10946-10965 MS.gene92064:intergenic 55.0%
GTGTTTGTGCGTCGGACACT+CGG + 21016:8872-8891 MS.gene92064:intergenic 55.0%
!! CCAAGTTTGCTGCACTGCCA+TGG - 21016:8189-8208 MS.gene92064:CDS 55.0%
!! GTCGGTGTCATTGTCGTGTC+CGG - 21016:8936-8955 MS.gene92064:intron 55.0%
!! GTGTAGTGTCGGTGTCAGAC+AGG - 21016:7545-7564 MS.gene92064:intron 55.0%
!!! ACGCGCTTGTTTTTCAGGCC+TGG - 21016:8368-8387 MS.gene92064:intron 55.0%
AATCCTCCATCTGGGCCTCG+AGG - 21016:10276-10295 MS.gene92064:CDS 60.0%
GGCCCAGATGGAGGATTTCG+TGG + 21016:10273-10292 MS.gene92064:intergenic 60.0%
CTACCTCGAGGCCCAGATGG+AGG + 21016:10282-10301 MS.gene92064:intergenic 65.0%


Chromosome Type Strat End Strand Name
21016 gene 7162 11343 7162 ID=MS.gene92064
21016 mRNA 7162 11343 7162 ID=MS.gene92064.t1;Parent=MS.gene92064
21016 exon 11153 11343 11153 ID=MS.gene92064.t1.exon1;Parent=MS.gene92064.t1
21016 CDS 11153 11343 11153 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 10578 10669 10578 ID=MS.gene92064.t1.exon2;Parent=MS.gene92064.t1
21016 CDS 10578 10669 10578 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 10456 10496 10456 ID=MS.gene92064.t1.exon3;Parent=MS.gene92064.t1
21016 CDS 10456 10496 10456 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 10205 10369 10205 ID=MS.gene92064.t1.exon4;Parent=MS.gene92064.t1
21016 CDS 10205 10369 10205 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 10098 10120 10098 ID=MS.gene92064.t1.exon5;Parent=MS.gene92064.t1
21016 CDS 10098 10120 10098 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 9899 9970 9899 ID=MS.gene92064.t1.exon6;Parent=MS.gene92064.t1
21016 CDS 9899 9970 9899 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 9216 9383 9216 ID=MS.gene92064.t1.exon7;Parent=MS.gene92064.t1
21016 CDS 9216 9383 9216 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 8176 8258 8176 ID=MS.gene92064.t1.exon8;Parent=MS.gene92064.t1
21016 CDS 8176 8258 8176 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 8033 8095 8033 ID=MS.gene92064.t1.exon9;Parent=MS.gene92064.t1
21016 CDS 8033 8095 8033 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016 exon 7162 7347 7162 ID=MS.gene92064.t1.exon10;Parent=MS.gene92064.t1
21016 CDS 7162 7347 7162 ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
Gene Sequence

>MS.gene92064

TGGTTGTTTTACTGTGATGGGTCACTGTAGAGTTCAAAGAGTAAAAGCTGTTGCTTCAGAGGGTTCTTCTGCTAATGTTACAGTTGAAGATAAGTTGAAATTGGGTGGTTCTGATTTGAAGGTGTCAACAATTGGAATTGGAGCTTGGTCTTGGGGTGATACTACTTACTGGAACAATTTTCAATGGAATGGTAACTTTTCTTTTCTCTTTTTGTATTCCTTCTAAATTGCATTGCACATATGAAGTAAAAACAATCAATCTTGGTCTTTGAATTTTACTATGTAGCTATGAAGCACGGACACGGACACGTTACAAACACTGACACGCCAACACTGCTAATAATGTGAAAAAATCACATAATTCGGTGTAATTGTAAGTGTTGGTGTAGTGTCGGTGTCAGACAGGACACCAGAACACGTCTAATCCGATGAGTGTCCATGCTTCATAGCTTTGTAGAAATTCCTACCTTTTGATGGGATAAGGAAGTTGACAAACATTTTAGGATTTTAGCTTTTTCAGATACCAATTATAGGTAGCTTTAAAGAGAAAAGGCAAATTGGGACCATTTAAATTTAATTAATCATGGTTCATTATTTTTGAATTGATTTTCTAATTTCTACTCAAGGATCATTAGATAGCAATCATCATCAATCTTCTCTTATGGTAATTTTAGATAGGAATGAGAAAGCTGCTAGAGATGCATTCAATACAAGTATTGATGGGGGTCTAACCTTTATCGACACAGCCGAAGTTTATGGCTCTGGGGTGAGTACATATCTTATCTTATCTAAGTTTCATTGATGAGTGTAAATAAATTCATTAATGTAATACTCTCTCTTTTTTAAGCTTGCTTTCGGAGCCGTAAATTCAGAAACTCTTCTAGGAAGGTAAAGCTTACATTTTTGGTATAATTTTCATTTGCGGTTATTAATCAAGGCTAGCATTAATGTTTCTATATGTTTGTAATGTGAAGATTTATTAAAGAACGAAAACAAAAGGATCCAAATGTTGAAGTTGAAGTCGCGACCAAGTTTGCTGCACTGCCATGGAGATTAGGCCGTGAAAGTGTTCTAAGTGCGCTTAAAGATTCCCTTGATCGACTCGAAATGACTTCTGTGGATCTGTATCAGCTTCATTGGTCTGTATTTTTATGAGCCTAGTGATTGATATTGTTTTTATCTAATAATATTGTTTTTGATGAAGTAACGCGCTTGTTTTTCAGGCCTGGAGTATGGGGAAATGAAGGTTGTCCAAATGTACCAATTTAATTAATTGAACTAATTATTTAATATAGTAAATGGAACAAAACATTTGAAAACTTATTCATAATCATATTAAGAGAATGCTAGTTCACCAATGAATTGTTTTTCAGGGTATATTGATGGTCTAGGTGATGCTGTTCAAAAAGGACTTGTAAAGGCTGTTGGTGTTTCAAACTATAGTGGTAACTCCATGATTATTACCTGTTGTGTAGTACCGATACATTATATTGAGAGTCTTACGAGATAGGATTCAGTTAGGAACTAGTTAGTTTGTTAGAGTTAATTAGAGTTTAGATTGGGAGTTGGTTCTTCTATATATAAAGAACTCATTGTATTACTTCATCTTTCGTTAATATGATTCAATTCGAGTCAAAAAAATTCTCAAAACTCTCAAAAGTTTTCTTCTCTGTCTTAAGGTTCCCAGTTTACTGAGATAAGGCATTTCCGAGTGTCCGACGCACAAACACTTGTGATTACATATTCACATCTATTTTCTCAAACTACTATTGGTGTCGGTGTCATTGTCGTGTCCGGTGTCAGTGATTTGTTGGTGGTTCATAGATCATCTGTCTTGGAGTCTTCTAAACATCAATTTTATGCAAAACTATGACTAACTTGTACCATAATAATTTGTTATGGTACTAGTTCTAGTTCTATGATCAGAAGTACCTAACATTCCTTTTTTCTATTTAAACAGAAAAACGACTACGCGAAGCATATGCACAGCTCAAGAAGAGAGGTATTCCATTGGCTTCAAATCAAGTAAACTACAGCCTCATTTATAGGGTCCCTGAAGAAAATGGTGTGAAGAAAACCTGTGATGAACTTGGGATTACATTGATTGCATATTCACCAATAGCTCAAGGTGAAATCCTTTTTACTATTCAAAACCACGTATTAAAAGAAAAATACTACCTCTATCCCTTTTTATAAATACCTACCTTTAAGGTGAATAAGTGGGTTGTTCGGGGTTCGAACCTCATACCCTGCATAACTAATTTTTTAAAAGAAAGTAGTATTATTAATGTGTACATTTTGTATAGCAATATTCTAGATATTTCTGGTAATGTTAATAATGTCTTACTTTATGACATTTCATCTTCTAAGATGACTTAGTAGTAATAATAATAATAATAATAAGGGGTCTATTTAGAAGAAATAAATTAATGTATTTAGTTATTTGGAAGATTGCTTATATCTCAGGGATTTTTTTTTTTTTTTTTGAAAGGGACTTATAATTAGAGACAGGTAGAATTTCTAATCCATAACACTGAGATTTGTTACTAAATATAACTACCATGGTTAATATATATCTGGTCAAAACCTCTTCCATGAAACATACGCACTTGATATTTAATGGTAACATTAGCACTTGATACTTAATGGTTAACGATTGAGAATCCATTTTCCAGGTTTTTGTAGTATTTAGGTCTATGTTTTGCATAAATTGAAATCTTTTGATTTTAAGAATTAGTTGATTGTCAGATACGGGAATTCGGAGTTTAATTATAATCATGGAGGGAGAGTAAACTTGCAAAAGTAATCATAAACTATTGTCGGTTTGTTTGGGAGAGTTTTTGTAGGGGAGGGTTTTTGTCTTAAAGAATTTGAGGAAGCTTAAGAGAGCTTTGAAACTTTCTCAAACAAACCGAGTTTATACACTACAAAACAATATCTAGAAAACATTATAATATACGGTATACACATATGACATAAGCATATGCCCATATGCCCATAACGAATTCCAACTCCATTCATGAAAGTTGTGCATACTCAATACTAATAGCCGCAAAAATTTATGCAAAATCATTATCTTAAGCAGGTGTTCTTACTGGAAAGTATACTCCACGAAATCCTCCATCTGGGCCTCGAGGTAGAATTTATACTCCAGAATTCCTAACAAAGGTACAACTTTTCTGAAATTTGCAGATTTAATGAATTATACCGATAGTACTTGGTTCCTCAAGTGTTTATTAATTTTGCAGCTTCAACCACTGCTGAAGAAGATCACTGAAATAGGAGACAAGTACAATAAAACTTCTACACAGGTTCATACTGTTCTTTATTTCCATGATATAAACTGAAAATTTGAAATATTAGTTTATTGTTTGTGTCATTTTGCTTTAACAATATAGTGAAGTCTGTTTGTGTCATCCTGCCTTGTTTCCAAAGGAGTTTAATGATTAGAAAAAGAGATAGTATAGCGTAGAATTTGTTCTGTGAGAATCACGGATTCACACAGAAATCTTACCAAGTACAACAAAGGCATTAGACATGGTGTTATATCGCCATGTGGTCATTGGCTTAATTGCACTTTTCCTCTCACTAATATCACTATTGTGCGTCCCCACGTTCAAATTGAGCGAATTAAGTTCCAAAGTAAGTAACCCTCTTATTACATTTAAGTCTCACTTATTGTGTTGTCTAAGTAAATATTTTTGGTATTCTCATGGGGGCAAAAAGGAGACAACATCAGCCATTATTAGTGCATGTGCTGCACTGCACGTGAAAATTCGTCCCTTGTGAACCGTCGACAATGCCAATGACAACGGACTTGATTGTAACAAGATGCATGCTTAGGGATTTAATTCCTGCATTTGAAACCTGGAGAACCGAAATTACACAATTGTAACACCTGATAGACTAAAAGTGCAATTAAGCTTTTAATTAGAATAGCCTTCAGATAATAATACTTGTGTGTTATCCCTTAAAAACAAACTGATTCTTTGTTAGGTATCACTAAACTGGCTGGTAGCTCAAGGAAATGTTGTACCAATTCCTGGTGCTAAAACAGCAGAACAAGCTGAAGAATTTAAAGGTGCATTGGGATGGAGATTGACTAATGAAGAGGTAGCTGAGCTACGAAGTTTGGCGTCGAAAATTAAGCCTGTTATTGGCTTTCCAGTTGAAAAACTCTGA

Protein sequence

>MS.gene92064.t1

WLFYCDGSLUSSKSKSCCFRGFFCUCYSURUVEIGWFUFEGVNNWNWSLVLGUYYLLEQFSMEUUEUESCURCIQYKYUWGSNLYRHSRSLWLWACFRSRKFRNSSRKIYURTKTKGSKCUSUSRDQVCCTAMEIRPUKCSKCAURFPUSTRNDFCGSVSASLAWSMGKURVYUWSRUCCSKRTCKGCWCFKLUUKTTTRSICTAQEERYSIGFKSSKLQPHLUGPURKWCEENLUUTWDYIDCIFTNSSRCSYWKVYSTKSSIWASRUNLYSRIPNKASTTAEEDHUNRRQVQUNFYTGITKLAGSSRKCCTNSWCUNSRTSURIURCIGMEIDUURGSUATKFGVENUACYWLSSUKTL