AlfalfaGEDB | MS.gene92064

M. sativa cultivar XinJiangDaYe / MS.gene92064

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92064.t1	XP_013459612.1	98.6	360	4	1	1	360	8	366	2.90E-203	717.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92064.t1	Q94A68	75.3	348	85	1	14	360	30	377	2.9e-156	552.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92064.t1	A0A072UX32	98.6	360	4	1	1	360	8	366	2.1e-203	717.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene92064	0.872931	2.18E-67	-1.69E-46
MS.gene049171	MS.gene92064	0.857503	1.56E-62	-1.69E-46
MS.gene049173	MS.gene92064	0.81769	2.89E-52	-1.69E-46
MS.gene049217	MS.gene92064	0.809476	1.86E-50	-1.69E-46
MS.gene049222	MS.gene92064	0.853347	2.54E-61	-1.69E-46
MS.gene049232	MS.gene92064	0.808166	3.54E-50	-1.69E-46
MS.gene049285	MS.gene92064	0.826746	2.29E-54	-1.69E-46
MS.gene049320	MS.gene92064	0.813285	2.77E-51	-1.69E-46
MS.gene049356	MS.gene92064	0.842705	2.20E-58	-1.69E-46
MS.gene049369	MS.gene92064	0.853188	2.82E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 0 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTACAGCCTCATTTATA+GGG	-	21016:9189-9208	MS.gene92064:intron	30.0%
AATAAGAGGGTTACTTACTT+TGG	+	21016:10802-10821	MS.gene92064:intergenic	30.0%
AATCTTACCAAGTACAACAA+AGG	-	21016:10668-10687	MS.gene92064:intron	30.0%
ACAATAGTGATATTAGTGAG+AGG	+	21016:10746-10765	MS.gene92064:intergenic	30.0%
ACCTAAATACTACAAAAACC+TGG	+	21016:9836-9855	MS.gene92064:intergenic	30.0%
AGAAAAGTTGTACCTTTGTT+AGG	+	21016:10323-10342	MS.gene92064:intergenic	30.0%
AGTAACAAATCTCAGTGTTA+TGG	+	21016:9690-9709	MS.gene92064:intergenic	30.0%
ATTAGTTGATTGTCAGATAC+GGG	-	21016:9894-9913	MS.gene92064:intron	30.0%
CATACGCACTTGATATTTAA+TGG	-	21016:9762-9781	MS.gene92064:intron	30.0%
CATTAGCACTTGATACTTAA+TGG	-	21016:9788-9807	MS.gene92064:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
21016	gene	7162	11343	7162	ID=MS.gene92064
21016	mRNA	7162	11343	7162	ID=MS.gene92064.t1;Parent=MS.gene92064
21016	exon	11153	11343	11153	ID=MS.gene92064.t1.exon1;Parent=MS.gene92064.t1
21016	CDS	11153	11343	11153	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	10578	10669	10578	ID=MS.gene92064.t1.exon2;Parent=MS.gene92064.t1
21016	CDS	10578	10669	10578	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	10456	10496	10456	ID=MS.gene92064.t1.exon3;Parent=MS.gene92064.t1
21016	CDS	10456	10496	10456	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	10205	10369	10205	ID=MS.gene92064.t1.exon4;Parent=MS.gene92064.t1
21016	CDS	10205	10369	10205	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	10098	10120	10098	ID=MS.gene92064.t1.exon5;Parent=MS.gene92064.t1
21016	CDS	10098	10120	10098	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	9899	9970	9899	ID=MS.gene92064.t1.exon6;Parent=MS.gene92064.t1
21016	CDS	9899	9970	9899	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	9216	9383	9216	ID=MS.gene92064.t1.exon7;Parent=MS.gene92064.t1
21016	CDS	9216	9383	9216	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	8176	8258	8176	ID=MS.gene92064.t1.exon8;Parent=MS.gene92064.t1
21016	CDS	8176	8258	8176	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	8033	8095	8033	ID=MS.gene92064.t1.exon9;Parent=MS.gene92064.t1
21016	CDS	8033	8095	8033	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1
21016	exon	7162	7347	7162	ID=MS.gene92064.t1.exon10;Parent=MS.gene92064.t1
21016	CDS	7162	7347	7162	ID=cds.MS.gene92064.t1;Parent=MS.gene92064.t1

Gene Sequence

>MS.gene92064

TGGTTGTTTTACTGTGATGGGTCACTGTAGAGTTCAAAGAGTAAAAGCTGTTGCTTCAGAGGGTTCTTCTGCTAATGTTACAGTTGAAGATAAGTTGAAATTGGGTGGTTCTGATTTGAAGGTGTCAACAATTGGAATTGGAGCTTGGTCTTGGGGTGATACTACTTACTGGAACAATTTTCAATGGAATGGTAACTTTTCTTTTCTCTTTTTGTATTCCTTCTAAATTGCATTGCACATATGAAGTAAAAACAATCAATCTTGGTCTTTGAATTTTACTATGTAGCTATGAAGCACGGACACGGACACGTTACAAACACTGACACGCCAACACTGCTAATAATGTGAAAAAATCACATAATTCGGTGTAATTGTAAGTGTTGGTGTAGTGTCGGTGTCAGACAGGACACCAGAACACGTCTAATCCGATGAGTGTCCATGCTTCATAGCTTTGTAGAAATTCCTACCTTTTGATGGGATAAGGAAGTTGACAAACATTTTAGGATTTTAGCTTTTTCAGATACCAATTATAGGTAGCTTTAAAGAGAAAAGGCAAATTGGGACCATTTAAATTTAATTAATCATGGTTCATTATTTTTGAATTGATTTTCTAATTTCTACTCAAGGATCATTAGATAGCAATCATCATCAATCTTCTCTTATGGTAATTTTAGATAGGAATGAGAAAGCTGCTAGAGATGCATTCAATACAAGTATTGATGGGGGTCTAACCTTTATCGACACAGCCGAAGTTTATGGCTCTGGGGTGAGTACATATCTTATCTTATCTAAGTTTCATTGATGAGTGTAAATAAATTCATTAATGTAATACTCTCTCTTTTTTAAGCTTGCTTTCGGAGCCGTAAATTCAGAAACTCTTCTAGGAAGGTAAAGCTTACATTTTTGGTATAATTTTCATTTGCGGTTATTAATCAAGGCTAGCATTAATGTTTCTATATGTTTGTAATGTGAAGATTTATTAAAGAACGAAAACAAAAGGATCCAAATGTTGAAGTTGAAGTCGCGACCAAGTTTGCTGCACTGCCATGGAGATTAGGCCGTGAAAGTGTTCTAAGTGCGCTTAAAGATTCCCTTGATCGACTCGAAATGACTTCTGTGGATCTGTATCAGCTTCATTGGTCTGTATTTTTATGAGCCTAGTGATTGATATTGTTTTTATCTAATAATATTGTTTTTGATGAAGTAACGCGCTTGTTTTTCAGGCCTGGAGTATGGGGAAATGAAGGTTGTCCAAATGTACCAATTTAATTAATTGAACTAATTATTTAATATAGTAAATGGAACAAAACATTTGAAAACTTATTCATAATCATATTAAGAGAATGCTAGTTCACCAATGAATTGTTTTTCAGGGTATATTGATGGTCTAGGTGATGCTGTTCAAAAAGGACTTGTAAAGGCTGTTGGTGTTTCAAACTATAGTGGTAACTCCATGATTATTACCTGTTGTGTAGTACCGATACATTATATTGAGAGTCTTACGAGATAGGATTCAGTTAGGAACTAGTTAGTTTGTTAGAGTTAATTAGAGTTTAGATTGGGAGTTGGTTCTTCTATATATAAAGAACTCATTGTATTACTTCATCTTTCGTTAATATGATTCAATTCGAGTCAAAAAAATTCTCAAAACTCTCAAAAGTTTTCTTCTCTGTCTTAAGGTTCCCAGTTTACTGAGATAAGGCATTTCCGAGTGTCCGACGCACAAACACTTGTGATTACATATTCACATCTATTTTCTCAAACTACTATTGGTGTCGGTGTCATTGTCGTGTCCGGTGTCAGTGATTTGTTGGTGGTTCATAGATCATCTGTCTTGGAGTCTTCTAAACATCAATTTTATGCAAAACTATGACTAACTTGTACCATAATAATTTGTTATGGTACTAGTTCTAGTTCTATGATCAGAAGTACCTAACATTCCTTTTTTCTATTTAAACAGAAAAACGACTACGCGAAGCATATGCACAGCTCAAGAAGAGAGGTATTCCATTGGCTTCAAATCAAGTAAACTACAGCCTCATTTATAGGGTCCCTGAAGAAAATGGTGTGAAGAAAACCTGTGATGAACTTGGGATTACATTGATTGCATATTCACCAATAGCTCAAGGTGAAATCCTTTTTACTATTCAAAACCACGTATTAAAAGAAAAATACTACCTCTATCCCTTTTTATAAATACCTACCTTTAAGGTGAATAAGTGGGTTGTTCGGGGTTCGAACCTCATACCCTGCATAACTAATTTTTTAAAAGAAAGTAGTATTATTAATGTGTACATTTTGTATAGCAATATTCTAGATATTTCTGGTAATGTTAATAATGTCTTACTTTATGACATTTCATCTTCTAAGATGACTTAGTAGTAATAATAATAATAATAATAAGGGGTCTATTTAGAAGAAATAAATTAATGTATTTAGTTATTTGGAAGATTGCTTATATCTCAGGGATTTTTTTTTTTTTTTTTGAAAGGGACTTATAATTAGAGACAGGTAGAATTTCTAATCCATAACACTGAGATTTGTTACTAAATATAACTACCATGGTTAATATATATCTGGTCAAAACCTCTTCCATGAAACATACGCACTTGATATTTAATGGTAACATTAGCACTTGATACTTAATGGTTAACGATTGAGAATCCATTTTCCAGGTTTTTGTAGTATTTAGGTCTATGTTTTGCATAAATTGAAATCTTTTGATTTTAAGAATTAGTTGATTGTCAGATACGGGAATTCGGAGTTTAATTATAATCATGGAGGGAGAGTAAACTTGCAAAAGTAATCATAAACTATTGTCGGTTTGTTTGGGAGAGTTTTTGTAGGGGAGGGTTTTTGTCTTAAAGAATTTGAGGAAGCTTAAGAGAGCTTTGAAACTTTCTCAAACAAACCGAGTTTATACACTACAAAACAATATCTAGAAAACATTATAATATACGGTATACACATATGACATAAGCATATGCCCATATGCCCATAACGAATTCCAACTCCATTCATGAAAGTTGTGCATACTCAATACTAATAGCCGCAAAAATTTATGCAAAATCATTATCTTAAGCAGGTGTTCTTACTGGAAAGTATACTCCACGAAATCCTCCATCTGGGCCTCGAGGTAGAATTTATACTCCAGAATTCCTAACAAAGGTACAACTTTTCTGAAATTTGCAGATTTAATGAATTATACCGATAGTACTTGGTTCCTCAAGTGTTTATTAATTTTGCAGCTTCAACCACTGCTGAAGAAGATCACTGAAATAGGAGACAAGTACAATAAAACTTCTACACAGGTTCATACTGTTCTTTATTTCCATGATATAAACTGAAAATTTGAAATATTAGTTTATTGTTTGTGTCATTTTGCTTTAACAATATAGTGAAGTCTGTTTGTGTCATCCTGCCTTGTTTCCAAAGGAGTTTAATGATTAGAAAAAGAGATAGTATAGCGTAGAATTTGTTCTGTGAGAATCACGGATTCACACAGAAATCTTACCAAGTACAACAAAGGCATTAGACATGGTGTTATATCGCCATGTGGTCATTGGCTTAATTGCACTTTTCCTCTCACTAATATCACTATTGTGCGTCCCCACGTTCAAATTGAGCGAATTAAGTTCCAAAGTAAGTAACCCTCTTATTACATTTAAGTCTCACTTATTGTGTTGTCTAAGTAAATATTTTTGGTATTCTCATGGGGGCAAAAAGGAGACAACATCAGCCATTATTAGTGCATGTGCTGCACTGCACGTGAAAATTCGTCCCTTGTGAACCGTCGACAATGCCAATGACAACGGACTTGATTGTAACAAGATGCATGCTTAGGGATTTAATTCCTGCATTTGAAACCTGGAGAACCGAAATTACACAATTGTAACACCTGATAGACTAAAAGTGCAATTAAGCTTTTAATTAGAATAGCCTTCAGATAATAATACTTGTGTGTTATCCCTTAAAAACAAACTGATTCTTTGTTAGGTATCACTAAACTGGCTGGTAGCTCAAGGAAATGTTGTACCAATTCCTGGTGCTAAAACAGCAGAACAAGCTGAAGAATTTAAAGGTGCATTGGGATGGAGATTGACTAATGAAGAGGTAGCTGAGCTACGAAGTTTGGCGTCGAAAATTAAGCCTGTTATTGGCTTTCCAGTTGAAAAACTCTGA

Protein sequence

>MS.gene92064.t1

WLFYCDGSLUSSKSKSCCFRGFFCUCYSURUVEIGWFUFEGVNNWNWSLVLGUYYLLEQFSMEUUEUESCURCIQYKYUWGSNLYRHSRSLWLWACFRSRKFRNSSRKIYURTKTKGSKCUSUSRDQVCCTAMEIRPUKCSKCAURFPUSTRNDFCGSVSASLAWSMGKURVYUWSRUCCSKRTCKGCWCFKLUUKTTTRSICTAQEERYSIGFKSSKLQPHLUGPURKWCEENLUUTWDYIDCIFTNSSRCSYWKVYSTKSSIWASRUNLYSRIPNKASTTAEEDHUNRRQVQUNFYTGITKLAGSSRKCCTNSWCUNSRTSURIURCIGMEIDUURGSUATKFGVENUACYWLSSUKTL