Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93247.t1 | RHN45498.1 | 95.3 | 86 | 4 | 0 | 1 | 86 | 1 | 86 | 1.00E-37 | 165.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93247.t1 | O81304 | 80.2 | 86 | 17 | 0 | 1 | 86 | 70 | 155 | 2.9e-33 | 142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93247.t1 | A0A072TY66 | 95.3 | 86 | 4 | 0 | 1 | 86 | 61 | 146 | 7.2e-38 | 165.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene93247 | 0.877894 | 4.36E-69 | -1.69E-46 |
| MS.gene049173 | MS.gene93247 | 0.841518 | 4.53E-58 | -1.69E-46 |
| MS.gene049217 | MS.gene93247 | 0.858542 | 7.67E-63 | -1.69E-46 |
| MS.gene049222 | MS.gene93247 | 0.878552 | 2.56E-69 | -1.69E-46 |
| MS.gene049232 | MS.gene93247 | 0.854525 | 1.16E-61 | -1.69E-46 |
| MS.gene049285 | MS.gene93247 | 0.893515 | 5.85E-75 | -1.69E-46 |
| MS.gene049320 | MS.gene93247 | 0.894632 | 2.05E-75 | -1.69E-46 |
| MS.gene049609 | MS.gene93247 | 0.873621 | 1.28E-67 | -1.69E-46 |
| MS.gene049627 | MS.gene93247 | 0.830557 | 2.75E-55 | -1.69E-46 |
| MS.gene049633 | MS.gene93247 | 0.857238 | 1.87E-62 | -1.69E-46 |
| MS.gene049805 | MS.gene93247 | 0.847567 | 1.07E-59 | -1.69E-46 |
| MS.gene05010 | MS.gene93247 | 0.861328 | 1.11E-63 | -1.69E-46 |
| MS.gene050163 | MS.gene93247 | 0.870851 | 1.07E-66 | -1.69E-46 |
| MS.gene050165 | MS.gene93247 | 0.862945 | 3.54E-64 | -1.69E-46 |
| MS.gene050170 | MS.gene93247 | 0.840668 | 7.57E-58 | -1.69E-46 |
| MS.gene050216 | MS.gene93247 | 0.813949 | 1.98E-51 | -1.69E-46 |
| MS.gene050323 | MS.gene93247 | 0.869417 | 3.15E-66 | -1.69E-46 |
| MS.gene050333 | MS.gene93247 | 0.849599 | 2.92E-60 | -1.69E-46 |
| MS.gene050381 | MS.gene93247 | -0.82172 | 3.48E-53 | -1.69E-46 |
| MS.gene050444 | MS.gene93247 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene050496 | MS.gene93247 | 0.842741 | 2.15E-58 | -1.69E-46 |
| MS.gene050502 | MS.gene93247 | 0.81313 | 2.99E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene93247 | 0.898441 | 5.29E-77 | -1.69E-46 |
| MS.gene050518 | MS.gene93247 | 0.852956 | 3.28E-61 | -1.69E-46 |
| MS.gene050538 | MS.gene93247 | 0.825886 | 3.67E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene93247 | 0.867401 | 1.41E-65 | -1.69E-46 |
| MS.gene050593 | MS.gene93247 | 0.820292 | 7.41E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene93247 | 0.881061 | 3.28E-70 | -1.69E-46 |
| MS.gene050662 | MS.gene93247 | 0.822362 | 2.47E-53 | -1.69E-46 |
| MS.gene050675 | MS.gene93247 | 0.859551 | 3.83E-63 | -1.69E-46 |
| MS.gene050686 | MS.gene93247 | 0.80396 | 2.72E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene93247 | 0.876779 | 1.06E-68 | -1.69E-46 |
| MS.gene050747 | MS.gene93247 | 0.870836 | 1.08E-66 | -1.69E-46 |
| MS.gene050772 | MS.gene93247 | 0.897973 | 8.35E-77 | -1.69E-46 |
| MS.gene05080 | MS.gene93247 | 0.826136 | 3.20E-54 | -1.69E-46 |
| MS.gene05081 | MS.gene93247 | 0.802762 | 4.81E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene93247 | 0.86372 | 2.03E-64 | -1.69E-46 |
| MS.gene050871 | MS.gene93247 | 0.865568 | 5.37E-65 | -1.69E-46 |
| MS.gene050876 | MS.gene93247 | 0.813072 | 3.08E-51 | -1.69E-46 |
| MS.gene050883 | MS.gene93247 | -0.801493 | 8.77E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene93247 | 0.870204 | 1.74E-66 | -1.69E-46 |
| MS.gene050986 | MS.gene93247 | 0.863757 | 1.98E-64 | -1.69E-46 |
| MS.gene05100 | MS.gene93247 | 0.846751 | 1.78E-59 | -1.69E-46 |
| MS.gene05104 | MS.gene93247 | -0.822566 | 2.21E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene93247 | -0.814501 | 1.49E-51 | -1.69E-46 |
| MS.gene051268 | MS.gene93247 | 0.811487 | 6.83E-51 | -1.69E-46 |
| MS.gene051317 | MS.gene93247 | 0.822024 | 2.95E-53 | -1.69E-46 |
| MS.gene051509 | MS.gene93247 | 0.804428 | 2.17E-49 | -1.69E-46 |
| MS.gene051551 | MS.gene93247 | 0.869879 | 2.22E-66 | -1.69E-46 |
| MS.gene051666 | MS.gene93247 | 0.811345 | 7.34E-51 | -1.69E-46 |
| MS.gene051692 | MS.gene93247 | 0.835697 | 1.44E-56 | -1.69E-46 |
| MS.gene051694 | MS.gene93247 | 0.835528 | 1.59E-56 | -1.69E-46 |
| MS.gene051810 | MS.gene93247 | 0.877267 | 7.21E-69 | -1.69E-46 |
| MS.gene051838 | MS.gene93247 | 0.827699 | 1.35E-54 | -1.69E-46 |
| MS.gene051858 | MS.gene93247 | 0.856897 | 2.36E-62 | -1.69E-46 |
| MS.gene052164 | MS.gene93247 | 0.875697 | 2.51E-68 | -1.69E-46 |
| MS.gene052271 | MS.gene93247 | 0.827756 | 1.31E-54 | -1.69E-46 |
| MS.gene052379 | MS.gene93247 | 0.810528 | 1.10E-50 | -1.69E-46 |
| MS.gene052482 | MS.gene93247 | 0.836958 | 6.90E-57 | -1.69E-46 |
| MS.gene052484 | MS.gene93247 | 0.803879 | 2.82E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene93247 | 0.852337 | 4.93E-61 | -1.69E-46 |
| MS.gene052501 | MS.gene93247 | 0.813884 | 2.04E-51 | -1.69E-46 |
| MS.gene052503 | MS.gene93247 | 0.859973 | 2.85E-63 | -1.69E-46 |
| MS.gene052506 | MS.gene93247 | 0.817837 | 2.68E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene93247 | 0.87927 | 1.43E-69 | -1.69E-46 |
| MS.gene052822 | MS.gene93247 | 0.825964 | 3.52E-54 | -1.69E-46 |
| MS.gene052823 | MS.gene93247 | 0.855966 | 4.42E-62 | -1.69E-46 |
| MS.gene052825 | MS.gene93247 | 0.853037 | 3.11E-61 | -1.69E-46 |
| MS.gene052872 | MS.gene93247 | 0.827864 | 1.24E-54 | -1.69E-46 |
| MS.gene052916 | MS.gene93247 | 0.866451 | 2.82E-65 | -1.69E-46 |
| MS.gene052966 | MS.gene93247 | 0.85951 | 3.94E-63 | -1.69E-46 |
| MS.gene053203 | MS.gene93247 | 0.868039 | 8.78E-66 | -1.69E-46 |
| MS.gene053207 | MS.gene93247 | 0.857453 | 1.62E-62 | -1.69E-46 |
| MS.gene053213 | MS.gene93247 | 0.906773 | 1.04E-80 | -1.69E-46 |
| MS.gene053286 | MS.gene93247 | 0.904708 | 9.25E-80 | -1.69E-46 |
| MS.gene053322 | MS.gene93247 | 0.802536 | 5.36E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene93247 | -0.822062 | 2.90E-53 | -1.69E-46 |
| MS.gene053436 | MS.gene93247 | 0.851112 | 1.10E-60 | -1.69E-46 |
| MS.gene053479 | MS.gene93247 | 0.829682 | 4.49E-55 | -1.69E-46 |
| MS.gene053480 | MS.gene93247 | 0.844276 | 8.36E-59 | -1.69E-46 |
| MS.gene053561 | MS.gene93247 | -0.801041 | 1.09E-48 | -1.69E-46 |
| MS.gene053574 | MS.gene93247 | 0.887045 | 2.01E-72 | -1.69E-46 |
| MS.gene053626 | MS.gene93247 | 0.830782 | 2.42E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene93247 | 0.860611 | 1.83E-63 | -1.69E-46 |
| MS.gene053633 | MS.gene93247 | 0.818461 | 1.94E-52 | -1.69E-46 |
| MS.gene053824 | MS.gene93247 | 0.867777 | 1.07E-65 | -1.69E-46 |
| MS.gene053916 | MS.gene93247 | 0.806843 | 6.76E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene93247 | 0.832471 | 9.28E-56 | -1.69E-46 |
| MS.gene054408 | MS.gene93247 | 0.869322 | 3.38E-66 | -1.69E-46 |
| MS.gene054595 | MS.gene93247 | 0.850527 | 1.60E-60 | -1.69E-46 |
| MS.gene054600 | MS.gene93247 | 0.877467 | 6.14E-69 | -1.69E-46 |
| MS.gene054642 | MS.gene93247 | 0.892228 | 1.93E-74 | -1.69E-46 |
| MS.gene054706 | MS.gene93247 | -0.823754 | 1.17E-53 | -1.69E-46 |
| MS.gene054708 | MS.gene93247 | -0.809762 | 1.61E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene93247 | 0.855111 | 7.85E-62 | -1.69E-46 |
| MS.gene054927 | MS.gene93247 | 0.822707 | 2.05E-53 | -1.69E-46 |
| MS.gene05494 | MS.gene93247 | 0.812055 | 5.14E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene93247 | 0.884125 | 2.51E-71 | -1.69E-46 |
| MS.gene05505 | MS.gene93247 | 0.819097 | 1.39E-52 | -1.69E-46 |
| MS.gene055154 | MS.gene93247 | -0.819112 | 1.38E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene93247 | 0.840737 | 7.26E-58 | -1.69E-46 |
| MS.gene055212 | MS.gene93247 | 0.839696 | 1.36E-57 | -1.69E-46 |
| MS.gene055224 | MS.gene93247 | 0.826691 | 2.36E-54 | -1.69E-46 |
| MS.gene055289 | MS.gene93247 | 0.829941 | 3.88E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene93247 | 0.900794 | 5.13E-78 | -1.69E-46 |
| MS.gene055502 | MS.gene93247 | 0.896701 | 2.86E-76 | -1.69E-46 |
| MS.gene055577 | MS.gene93247 | 0.886424 | 3.46E-72 | -1.69E-46 |
| MS.gene055647 | MS.gene93247 | 0.814692 | 1.35E-51 | -1.69E-46 |
| MS.gene055722 | MS.gene93247 | 0.891796 | 2.86E-74 | -1.69E-46 |
| MS.gene055748 | MS.gene93247 | 0.8219 | 3.16E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene93247 | 0.841726 | 3.99E-58 | -1.69E-46 |
| MS.gene055751 | MS.gene93247 | 0.828558 | 8.41E-55 | -1.69E-46 |
| MS.gene055776 | MS.gene93247 | 0.833713 | 4.55E-56 | -1.69E-46 |
| MS.gene05589 | MS.gene93247 | 0.864093 | 1.56E-64 | -1.69E-46 |
| MS.gene05592 | MS.gene93247 | 0.809465 | 1.87E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene93247 | 0.848512 | 5.85E-60 | -1.69E-46 |
| MS.gene056046 | MS.gene93247 | 0.850829 | 1.32E-60 | -1.69E-46 |
| MS.gene056083 | MS.gene93247 | 0.836382 | 9.67E-57 | -1.69E-46 |
| MS.gene056166 | MS.gene93247 | 0.840094 | 1.07E-57 | -1.69E-46 |
| MS.gene056374 | MS.gene93247 | 0.880343 | 5.93E-70 | -1.69E-46 |
| MS.gene056387 | MS.gene93247 | 0.806135 | 9.53E-50 | -1.69E-46 |
| MS.gene056409 | MS.gene93247 | 0.820063 | 8.36E-53 | -1.69E-46 |
| MS.gene056446 | MS.gene93247 | 0.820076 | 8.30E-53 | -1.69E-46 |
| MS.gene056448 | MS.gene93247 | 0.844217 | 8.67E-59 | -1.69E-46 |
| MS.gene056504 | MS.gene93247 | 0.893029 | 9.19E-75 | -1.69E-46 |
| MS.gene056510 | MS.gene93247 | 0.879604 | 1.09E-69 | -1.69E-46 |
| MS.gene056549 | MS.gene93247 | 0.831725 | 1.42E-55 | -1.69E-46 |
| MS.gene056610 | MS.gene93247 | 0.8373 | 5.64E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene93247 | 0.899967 | 1.17E-77 | -1.69E-46 |
| MS.gene056692 | MS.gene93247 | 0.846967 | 1.56E-59 | -1.69E-46 |
| MS.gene056897 | MS.gene93247 | 0.800512 | 1.39E-48 | -1.69E-46 |
| MS.gene056946 | MS.gene93247 | 0.825546 | 4.42E-54 | -1.69E-46 |
| MS.gene057048 | MS.gene93247 | 0.800157 | 1.64E-48 | -1.69E-46 |
| MS.gene057076 | MS.gene93247 | 0.834647 | 2.66E-56 | -1.69E-46 |
| MS.gene057086 | MS.gene93247 | 0.830424 | 2.96E-55 | -1.69E-46 |
| MS.gene057129 | MS.gene93247 | 0.811116 | 8.22E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene93247 | 0.837273 | 5.73E-57 | -1.69E-46 |
| MS.gene057416 | MS.gene93247 | 0.864406 | 1.24E-64 | -1.69E-46 |
| MS.gene057658 | MS.gene93247 | 0.823371 | 1.44E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene93247 | 0.818359 | 2.04E-52 | -1.69E-46 |
| MS.gene057805 | MS.gene93247 | 0.825053 | 5.78E-54 | -1.69E-46 |
| MS.gene057831 | MS.gene93247 | 0.84892 | 4.51E-60 | -1.69E-46 |
| MS.gene057856 | MS.gene93247 | 0.81824 | 2.17E-52 | -1.69E-46 |
| MS.gene057857 | MS.gene93247 | 0.83882 | 2.29E-57 | -1.69E-46 |
| MS.gene05787 | MS.gene93247 | 0.828354 | 9.42E-55 | -1.69E-46 |
| MS.gene057926 | MS.gene93247 | 0.820432 | 6.88E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene93247 | 0.845581 | 3.72E-59 | -1.69E-46 |
| MS.gene058157 | MS.gene93247 | 0.812876 | 3.40E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene93247 | 0.811496 | 6.80E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene93247 | -0.810668 | 1.03E-50 | -1.69E-46 |
| MS.gene058338 | MS.gene93247 | 0.860271 | 2.32E-63 | -1.69E-46 |
| MS.gene05837 | MS.gene93247 | 0.854101 | 1.54E-61 | -1.69E-46 |
| MS.gene058419 | MS.gene93247 | 0.89276 | 1.18E-74 | -1.69E-46 |
| MS.gene058544 | MS.gene93247 | 0.885177 | 1.02E-71 | -1.69E-46 |
| MS.gene058723 | MS.gene93247 | 0.84246 | 2.55E-58 | -1.69E-46 |
| MS.gene058773 | MS.gene93247 | 0.863759 | 1.98E-64 | -1.69E-46 |
| MS.gene058838 | MS.gene93247 | 0.862655 | 4.34E-64 | -1.69E-46 |
| MS.gene05883 | MS.gene93247 | 0.827871 | 1.23E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene93247 | 0.906791 | 1.02E-80 | -1.69E-46 |
| MS.gene059023 | MS.gene93247 | 0.880696 | 4.44E-70 | -1.69E-46 |
| MS.gene05913 | MS.gene93247 | 0.858189 | 9.78E-63 | -1.69E-46 |
| MS.gene059305 | MS.gene93247 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene93247 | 0.829839 | 4.11E-55 | -1.69E-46 |
| MS.gene059367 | MS.gene93247 | 0.83757 | 4.81E-57 | -1.69E-46 |
| MS.gene059536 | MS.gene93247 | 0.830649 | 2.61E-55 | -1.69E-46 |
| MS.gene059667 | MS.gene93247 | 0.811204 | 7.87E-51 | -1.69E-46 |
| MS.gene059677 | MS.gene93247 | 0.882564 | 9.38E-71 | -1.69E-46 |
| MS.gene059718 | MS.gene93247 | 0.892299 | 1.80E-74 | -1.69E-46 |
| MS.gene059756 | MS.gene93247 | 0.846167 | 2.57E-59 | -1.69E-46 |
| MS.gene059801 | MS.gene93247 | 0.847447 | 1.15E-59 | -1.69E-46 |
| MS.gene059837 | MS.gene93247 | 0.821455 | 4.00E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene93247 | 0.896577 | 3.23E-76 | -1.69E-46 |
| MS.gene059902 | MS.gene93247 | 0.850099 | 2.11E-60 | -1.69E-46 |
| MS.gene059916 | MS.gene93247 | -0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene06000 | MS.gene93247 | 0.853193 | 2.81E-61 | -1.69E-46 |
| MS.gene060341 | MS.gene93247 | 0.802532 | 5.37E-49 | -1.69E-46 |
| MS.gene060482 | MS.gene93247 | 0.887639 | 1.20E-72 | -1.69E-46 |
| MS.gene060595 | MS.gene93247 | -0.807525 | 4.85E-50 | -1.69E-46 |
| MS.gene060703 | MS.gene93247 | 0.889477 | 2.34E-73 | -1.69E-46 |
| MS.gene060728 | MS.gene93247 | 0.812319 | 4.50E-51 | -1.69E-46 |
| MS.gene060762 | MS.gene93247 | 0.881569 | 2.15E-70 | -1.69E-46 |
| MS.gene060778 | MS.gene93247 | 0.854136 | 1.51E-61 | -1.69E-46 |
| MS.gene06077 | MS.gene93247 | 0.897467 | 1.37E-76 | -1.69E-46 |
| MS.gene060804 | MS.gene93247 | 0.815024 | 1.14E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene93247 | 0.825471 | 4.60E-54 | -1.69E-46 |
| MS.gene060837 | MS.gene93247 | 0.821847 | 3.25E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene93247 | 0.850226 | 1.95E-60 | -1.69E-46 |
| MS.gene06097 | MS.gene93247 | 0.808816 | 2.57E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene93247 | 0.892426 | 1.60E-74 | -1.69E-46 |
| MS.gene061041 | MS.gene93247 | 0.801654 | 8.13E-49 | -1.69E-46 |
| MS.gene061134 | MS.gene93247 | 0.822642 | 2.12E-53 | -1.69E-46 |
| MS.gene061150 | MS.gene93247 | 0.862221 | 5.91E-64 | -1.69E-46 |
| MS.gene061200 | MS.gene93247 | 0.82303 | 1.73E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93247.t1 | MTR_7g444820 | 95.349 | 86 | 4 | 0 | 1 | 86 | 61 | 146 | 6.75e-54 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93247.t1 | AT4G00030 | 80.233 | 86 | 17 | 0 | 1 | 86 | 70 | 155 | 5.35e-45 | 144 |
Find 21 sgRNAs with CRISPR-Local
Find 22 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGAAGGCTGGCTTGTT+TGG | 0.287312 | 7.4:+58025903 | MS.gene93247:CDS |
| CGGCAACTTGGCGGTTGCTA+TGG | 0.431789 | 7.4:+58025853 | MS.gene93247:CDS |
| ATCAATGCAATGGCCGAGCT+TGG | 0.432490 | 7.4:+58025798 | None:intergenic |
| GGCTTGTTTGGAACTAAAGC+TGG | 0.432776 | 7.4:+58025915 | MS.gene93247:CDS |
| GTCGAATATTGAAGTTGCTT+CGG | 0.436707 | 7.4:+58026022 | MS.gene93247:CDS |
| TACTGTACCGGTGCCAAGCT+CGG | 0.464081 | 7.4:-58025811 | None:intergenic |
| CTGTTCATCATTGAGAAGGC+TGG | 0.471690 | 7.4:+58025894 | MS.gene93247:CDS |
| ATTCCCTGTCGGCAACTTGG+CGG | 0.514923 | 7.4:+58025844 | MS.gene93247:CDS |
| GTGATTCCCTGTCGGCAACT+TGG | 0.515452 | 7.4:+58025841 | MS.gene93247:CDS |
| GCAACCGCCAAGTTGCCGAC+AGG | 0.517472 | 7.4:-58025848 | None:intergenic |
| CGAACAAAGAAAACACCATC+AGG | 0.525042 | 7.4:-58025999 | None:intergenic |
| AGTTGCCGACAGGGAATCAC+CGG | 0.537341 | 7.4:-58025838 | None:intergenic |
| ATCACCGGTGGTTACTGTAC+CGG | 0.542477 | 7.4:-58025823 | None:intergenic |
| CAACCGCCAAGTTGCCGACA+GGG | 0.563353 | 7.4:-58025847 | None:intergenic |
| GCAATGGCCGAGCTTGGCAC+CGG | 0.566613 | 7.4:+58025804 | None:intergenic |
| GCAGCTGTTCATCATTGAGA+AGG | 0.611613 | 7.4:+58025890 | MS.gene93247:CDS |
| GTTGCTATGGACTACTGAGA+AGG | 0.629470 | 7.4:+58025866 | MS.gene93247:CDS |
| GGCACCGGTACAGTAACCAC+CGG | 0.635581 | 7.4:+58025819 | MS.gene93247:CDS |
| AACCACCGGTGATTCCCTGT+CGG | 0.657904 | 7.4:+58025833 | MS.gene93247:CDS |
| TGCCGACAGGGAATCACCGG+TGG | 0.664133 | 7.4:-58025835 | None:intergenic |
| ACAAAGAAAACACCATCAGG+AGG | 0.672815 | 7.4:-58025996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GTCGAATATTGAAGTTGCTT+CGG | + | chr7.4:58026022-58026041 | MS.gene93247:CDS | 35.0% | |
| ! | TAAAGCTGGAGATGTTTTAC+AGG | + | chr7.4:58025929-58025948 | MS.gene93247:CDS | 35.0% |
| !! | CTGATGGTGTTTTCTTTGTT+CGG | + | chr7.4:58026000-58026019 | MS.gene93247:CDS | 35.0% |
| !! | GTTATTACTTTTCCTCCTGA+TGG | + | chr7.4:58025984-58026003 | MS.gene93247:CDS | 35.0% |
| ACAAAGAAAACACCATCAGG+AGG | - | chr7.4:58025999-58026018 | None:intergenic | 40.0% | |
| CGAACAAAGAAAACACCATC+AGG | - | chr7.4:58026002-58026021 | None:intergenic | 40.0% | |
| CTGTTCATCATTGAGAAGGC+TGG | + | chr7.4:58025894-58025913 | MS.gene93247:CDS | 45.0% | |
| GCAGCTGTTCATCATTGAGA+AGG | + | chr7.4:58025890-58025909 | MS.gene93247:CDS | 45.0% | |
| ! | GGCTTGTTTGGAACTAAAGC+TGG | + | chr7.4:58025915-58025934 | MS.gene93247:CDS | 45.0% |
| ! | GTTGCTATGGACTACTGAGA+AGG | + | chr7.4:58025866-58025885 | MS.gene93247:CDS | 45.0% |
| !! | ATTGAGAAGGCTGGCTTGTT+TGG | + | chr7.4:58025903-58025922 | MS.gene93247:CDS | 45.0% |
| ATCACCGGTGGTTACTGTAC+CGG | - | chr7.4:58025826-58025845 | None:intergenic | 50.0% | |
| AACCACCGGTGATTCCCTGT+CGG | + | chr7.4:58025833-58025852 | MS.gene93247:CDS | 55.0% | |
| AGTTGCCGACAGGGAATCAC+CGG | - | chr7.4:58025841-58025860 | None:intergenic | 55.0% | |
| ATTCCCTGTCGGCAACTTGG+CGG | + | chr7.4:58025844-58025863 | MS.gene93247:CDS | 55.0% | |
| GTGATTCCCTGTCGGCAACT+TGG | + | chr7.4:58025841-58025860 | MS.gene93247:CDS | 55.0% | |
| ! | TACTGTACCGGTGCCAAGCT+CGG | - | chr7.4:58025814-58025833 | None:intergenic | 55.0% |
| CAACCGCCAAGTTGCCGACA+GGG | - | chr7.4:58025850-58025869 | None:intergenic | 60.0% | |
| CGGCAACTTGGCGGTTGCTA+TGG | + | chr7.4:58025853-58025872 | MS.gene93247:CDS | 60.0% | |
| !! | GGCACCGGTACAGTAACCAC+CGG | + | chr7.4:58025819-58025838 | MS.gene93247:CDS | 60.0% |
| GCAACCGCCAAGTTGCCGAC+AGG | - | chr7.4:58025851-58025870 | None:intergenic | 65.0% | |
| TGCCGACAGGGAATCACCGG+TGG | - | chr7.4:58025838-58025857 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 58025807 | 58026067 | 58025807 | ID=MS.gene93247 |
| chr7.4 | mRNA | 58025807 | 58026067 | 58025807 | ID=MS.gene93247.t1;Parent=MS.gene93247 |
| chr7.4 | exon | 58025807 | 58026067 | 58025807 | ID=MS.gene93247.t1.exon1;Parent=MS.gene93247.t1 |
| chr7.4 | CDS | 58025807 | 58026067 | 58025807 | ID=cds.MS.gene93247.t1;Parent=MS.gene93247.t1 |
| Gene Sequence |
| Protein sequence |
