AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0434460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434460 MtrunA17_Chr3g0140681 93.564 404 9 2 1 392 1 399 0.0 773
Msa0434460 MtrunA17_Chr0c06g0493481 52.770 379 151 7 30 392 52 418 1.38e-132 386
Msa0434460 MtrunA17_Chr4g0072801 55.043 347 131 6 64 392 72 411 4.15e-129 377
Msa0434460 MtrunA17_Chr1g0170451 47.633 338 148 6 66 390 31 352 6.79e-99 298
Msa0434460 MtrunA17_Chr8g0379001 40.730 356 185 5 61 391 85 439 5.27e-85 266
Msa0434460 MtrunA17_Chr2g0283771 40.719 334 171 7 61 371 79 408 4.10e-73 234
Msa0434460 MtrunA17_Chr7g0214251 85.185 81 12 0 125 205 46 126 6.03e-43 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0434460 AT1G10040.1 57.453 369 134 7 36 391 53 411 6.82e-143 412
Msa0434460 AT1G10040.2 56.897 348 127 7 36 370 53 390 4.22e-131 382
Msa0434460 AT4G25770.1 49.185 368 137 7 48 392 78 418 2.16e-114 340
Msa0434460 AT5G51180.2 48.688 343 146 7 62 391 31 356 2.69e-104 312
Msa0434460 AT5G51180.1 48.688 343 146 7 62 391 31 356 2.69e-104 312
Msa0434460 AT4G25770.2 48.266 346 129 7 48 370 78 396 7.48e-104 313
Msa0434460 AT1G29120.8 40.720 361 176 7 58 391 95 444 2.00e-82 259
Msa0434460 AT1G29120.1 40.720 361 176 7 58 391 94 443 2.31e-82 259
Msa0434460 AT1G29120.2 40.720 361 176 7 58 391 94 443 2.31e-82 259
Msa0434460 AT1G29120.5 40.608 362 176 8 58 391 94 444 1.23e-80 255
Msa0434460 AT1G29120.7 41.765 340 160 7 58 370 94 422 6.82e-78 247
Msa0434460 AT1G29120.3 44.074 270 129 5 58 314 94 354 1.38e-68 222
Msa0434460 AT1G29120.4 44.074 270 129 5 58 314 94 354 1.75e-68 221
Msa0434460 AT1G29120.6 43.103 232 111 4 58 276 94 317 1.36e-57 191

Find 116 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACACGGTTGCATAATT+AGG 0.238816 3_2:-87223819 Msa0434460:three_prime_UTR
CACTTGATCATTATGGTTAA+TGG 0.242137 3_2:-87228187 Msa0434460:CDS
TTTCGTGTTATAATACTTCT+TGG 0.244970 3_2:+87223893 None:intergenic
CCCTACTCACTTGATCATTA+TGG 0.263643 3_2:-87228194 Msa0434460:CDS
TGTATTGCAGTGCTCATAAT+TGG 0.264626 3_2:-87228050 Msa0434460:intron
TTCTCTTCAGGTCTGCTTTA+CGG 0.279950 3_2:-87226066 Msa0434460:intron
TTGCCATTGGAAGTTGAAAA+AGG 0.291569 3_2:-87223930 Msa0434460:three_prime_UTR
GCCTTACCCTATTTGTTAGA+AGG 0.299293 3_2:+87224105 None:intergenic
TCTCATATTTCTGAAAGAAA+TGG 0.311292 3_2:-87223773 Msa0434460:three_prime_UTR
ACAATGTACAATAACATCAT+AGG 0.313578 3_2:+87227993 None:intergenic
ATTGAAGTTGTTGATGCTTC+TGG 0.317200 3_2:-87228229 Msa0434460:CDS
GTTATGTGGATTTCACTCTT+TGG 0.332758 3_2:-87226307 Msa0434460:CDS
GCAGACGTAATAAAATTAAT+AGG 0.342709 3_2:+87226627 None:intergenic
GATCCCAATTCACTGTTGTT+AGG 0.351788 3_2:+87224558 None:intergenic
TCTCGTCTTTCACGGTTTCT+TGG 0.354731 3_2:-87226273 Msa0434460:CDS
TCTCGCACATAATGCAATTC+AGG 0.356007 3_2:-87224498 Msa0434460:intron
GAGGCCTAACAACAGTGAAT+TGG 0.373395 3_2:-87224562 Msa0434460:CDS
TATTTCTAAGGAACTATCTC+AGG 0.376332 3_2:-87226730 Msa0434460:CDS
AAGTTGAAATTCCCCAAGTT+TGG 0.377997 3_2:-87228295 Msa0434460:CDS
TCACGGTTTCTTGGTAAAAC+AGG 0.379925 3_2:-87226264 Msa0434460:CDS
TTACATGAATTTAATATCTT+CGG 0.384225 3_2:+87226173 None:intergenic
TTATGAGAGAGATATTTCTA+AGG 0.386599 3_2:-87226742 Msa0434460:CDS
TCTTCAACATTGACATTTGA+CGG 0.387095 3_2:-87227087 Msa0434460:CDS
GATTCACTTGGAACTTCCTC+TGG 0.397952 3_2:+87225698 None:intergenic
GATTCTGAAACAACCAAACT+TGG 0.398649 3_2:+87228282 None:intergenic
CTCATATTTCTGAAAGAAAT+GGG 0.401263 3_2:-87223772 Msa0434460:three_prime_UTR
TCTAACATGACATTCTTGAT+TGG 0.415522 3_2:+87226680 None:intergenic
GAATCCAACATGATGCTAAA+GGG 0.419749 3_2:-87228264 Msa0434460:CDS
CCCTTGAAAAGATAAAATAA+TGG 0.425247 3_2:+87224083 None:intergenic
CTTTAGGTACCTTTGTTATG+TGG 0.429412 3_2:-87226321 Msa0434460:intron
AGGCCTAACAACAGTGAATT+GGG 0.430321 3_2:-87224561 Msa0434460:CDS
CTGCAAAGCAATTTCTCAAA+AGG 0.432708 3_2:-87228020 Msa0434460:CDS
ATTATGGTTAATGGTCTCAT+TGG 0.432977 3_2:-87228178 Msa0434460:CDS
AAACAGCATCTCGTCTTTCA+CGG 0.439813 3_2:-87226281 Msa0434460:CDS
AGAATCCAACATGATGCTAA+AGG 0.445116 3_2:-87228265 Msa0434460:CDS
TGGTTAATGGTCTCATTGGC+AGG 0.445481 3_2:-87228174 Msa0434460:intron
GATGGAGCACATCATCTATA+AGG 0.445579 3_2:-87225894 Msa0434460:CDS
CTACTCCGTCGGAATTAATT+CGG 0.449536 3_2:+87224184 None:intergenic
CTTCGGAGTCACGAACCATC+TGG 0.449587 3_2:+87226190 None:intergenic
ATAGGCAACGCGACGTTTGA+AGG 0.458227 3_2:+87226042 None:intergenic
CCTTACCCTATTTGTTAGAA+GGG 0.472177 3_2:+87224106 None:intergenic
TTTGACGGTGTTGATGTAAC+GGG 0.476103 3_2:-87227072 Msa0434460:CDS
CAATGTACAATAACATCATA+GGG 0.477170 3_2:+87227994 None:intergenic
TCCAATGTTAGTAGTGGATC+CGG 0.480213 3_2:-87225677 Msa0434460:CDS
TTCCTCTGGAAGAACGGAAG+TGG 0.484010 3_2:+87225712 None:intergenic
CTACTAACATTGGATTCACT+TGG 0.486876 3_2:+87225686 None:intergenic
ACGTCAGCTTCAGTGGTAGT+AGG 0.487212 3_2:-87224529 Msa0434460:CDS
ATTATGCAACCGTGTAGAAT+AGG 0.488175 3_2:+87223823 None:intergenic
TCTGAAAGAAATGGGAAGAA+TGG 0.490206 3_2:-87223764 Msa0434460:three_prime_UTR
CTTTAGGTGGCTTGATAGCA+AGG 0.492030 3_2:-87226782 Msa0434460:intron
ACCGGATCCACTACTAACAT+TGG 0.495965 3_2:+87225676 None:intergenic
ACAACGCTATGTTGAACCTT+GGG 0.503566 3_2:+87228364 None:intergenic
TCGCCACTTTGTAGTGGCGA+GGG 0.504024 3_2:-87224018 Msa0434460:three_prime_UTR
AACAACGCTATGTTGAACCT+TGG 0.505025 3_2:+87228363 None:intergenic
GAAGTATTATAACACGAAAG+AGG 0.510033 3_2:-87223889 Msa0434460:three_prime_UTR
CAGAAATATGAGAAAGAACA+AGG 0.514463 3_2:+87223783 None:intergenic
AATATCTCTCTCATAAAGCT+TGG 0.517633 3_2:+87226749 None:intergenic
CCATAATGATCAAGTGAGTA+GGG 0.520538 3_2:+87228194 None:intergenic
ACCTCCTCTTCTTCTCCAGA+TGG 0.522445 3_2:-87226205 Msa0434460:CDS
CATCCCCTTTAGCATCATGT+TGG 0.522722 3_2:+87228260 None:intergenic
CGAATTGACGTCAGCTTCAG+TGG 0.524198 3_2:-87224536 Msa0434460:CDS
TACAAAGTGGCGAAGTAAGT+TGG 0.528086 3_2:+87224028 None:intergenic
ACGCCGCACCTTGGTTGTAG+AGG 0.533774 3_2:-87226603 Msa0434460:CDS
ATTCTGAAACAACCAAACTT+GGG 0.536584 3_2:+87228283 None:intergenic
GACTCCTAAATAGAGCTAGT+TGG 0.537639 3_2:-87225916 Msa0434460:intron
CCCTTCTAACAAATAGGGTA+AGG 0.537806 3_2:-87224106 Msa0434460:three_prime_UTR
CGCCGCACCTTGGTTGTAGA+GGG 0.541933 3_2:-87226602 Msa0434460:CDS
ATTATAACACGAAAGAGGGC+AGG 0.546516 3_2:-87223884 Msa0434460:three_prime_UTR
ACGTCTGCAACGCCGCACCT+TGG 0.547946 3_2:-87226612 Msa0434460:CDS
TGTCATGTTAGAAAATATGA+AGG 0.548935 3_2:-87226669 Msa0434460:CDS
TCCTCTGGAAGAACGGAAGT+GGG 0.550815 3_2:+87225713 None:intergenic
GTCTCTACATTTACAATGTG+TGG 0.550977 3_2:+87225743 None:intergenic
TTCGCCACTTTGTAGTGGCG+AGG 0.555277 3_2:-87224019 Msa0434460:three_prime_UTR
GAAAATCGTCAATCATGTGT+TGG 0.557426 3_2:+87224154 None:intergenic
TGGAACTTCCTCTGGAAGAA+CGG 0.558559 3_2:+87225706 None:intergenic
CTTACTTCGCCACTTTGTAG+TGG 0.559949 3_2:-87224024 Msa0434460:three_prime_UTR
GGGAATATGCACAAACAACC+CGG 0.562128 3_2:+87224052 None:intergenic
GCTTATGCCCTCTACAACCA+AGG 0.563131 3_2:+87226595 None:intergenic
ACCATAATGATCAAGTGAGT+AGG 0.563645 3_2:+87228193 None:intergenic
CGAACCATCTGGAGAAGAAG+AGG 0.566975 3_2:+87226201 None:intergenic
CCTAAATAGAGCTAGTTGGA+TGG 0.569660 3_2:-87225912 Msa0434460:intron
AAGTATTATAACACGAAAGA+GGG 0.570956 3_2:-87223888 Msa0434460:three_prime_UTR
CGCCACTTTGTAGTGGCGAG+GGG 0.576171 3_2:-87224017 Msa0434460:three_prime_UTR
ACCCACTTCCGTTCTTCCAG+AGG 0.581065 3_2:-87225714 Msa0434460:CDS
CAACATGATGCTAAAGGGGA+TGG 0.581086 3_2:-87228259 Msa0434460:CDS
AGTGAATCCAATGTTAGTAG+TGG 0.581455 3_2:-87225683 Msa0434460:CDS
TCCGGTAAAATTGACTTCGA+AGG 0.589799 3_2:-87225659 Msa0434460:intron
TCCGTCGGAATTAATTCGGT+AGG 0.592120 3_2:+87224188 None:intergenic
CTTACCCTATTTGTTAGAAG+GGG 0.593843 3_2:+87224107 None:intergenic
ATTTCTAAGGAACTATCTCA+GGG 0.594450 3_2:-87226729 Msa0434460:CDS
ATTTGACGGTGTTGATGTAA+CGG 0.596656 3_2:-87227073 Msa0434460:CDS
TGGTTGTAGAGGGCATAAGC+AGG 0.598834 3_2:-87226592 Msa0434460:intron
TTCTGAAACAACCAAACTTG+GGG 0.598993 3_2:+87228284 None:intergenic
TAATTCCGACGGAGTAGATG+TGG 0.607110 3_2:-87224178 Msa0434460:CDS
TTGGACCACATCTACTCCGT+CGG 0.612547 3_2:+87224173 None:intergenic
AATCCAACATGATGCTAAAG+GGG 0.615989 3_2:-87228263 Msa0434460:CDS
AACCCCTCGCCACTACAAAG+TGG 0.616024 3_2:+87224015 None:intergenic
TTACCCTATTTGTTAGAAGG+GGG 0.617394 3_2:+87224108 None:intergenic
AAAGTGGCGAAGTAAGTTGG+TGG 0.623365 3_2:+87224031 None:intergenic
GGGAAATAGATTAGCAGAGG+AGG 0.625847 3_2:-87227052 Msa0434460:intron
GTCATAACGAATATTTGCAT+AGG 0.638991 3_2:+87226024 None:intergenic
ACCTACCGAATTAATTCCGA+CGG 0.640799 3_2:-87224189 Msa0434460:CDS
TTTATGCTACCTATTCTACA+CGG 0.641103 3_2:-87223832 Msa0434460:three_prime_UTR
AAGTGGCGAAGTAAGTTGGT+GGG 0.646263 3_2:+87224032 None:intergenic
ACCATCTGGAGAAGAAGAGG+AGG 0.646740 3_2:+87226204 None:intergenic
GCGTAGAAACGAGCTTCCAA+AGG 0.649589 3_2:-87225872 Msa0434460:intron
AACGGGAAATAGATTAGCAG+AGG 0.651204 3_2:-87227055 Msa0434460:CDS
AGAAATATGAGAAAGAACAA+GGG 0.662843 3_2:+87223784 None:intergenic
CTCGCAGAGGAAATGATCAG+AGG 0.670602 3_2:-87224581 Msa0434460:intron
GGAATCACAACAGATACCCA+AGG 0.675906 3_2:-87228380 Msa0434460:CDS
GAGTGAAATCCACATAACAA+AGG 0.677854 3_2:+87226312 None:intergenic
TGCCCTCTACAACCAAGGTG+CGG 0.704644 3_2:+87226600 None:intergenic
AATGTACAATAACATCATAG+GGG 0.707394 3_2:+87227995 None:intergenic
TAGCATAAAAGCATCCTCTG+TGG 0.718989 3_2:+87223846 None:intergenic
TAAATTGATGAATACCACAG+AGG 0.748309 3_2:-87223860 Msa0434460:three_prime_UTR
TTTCTAAGGAACTATCTCAG+GGG 0.757402 3_2:-87226728 Msa0434460:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATCTTTTTGAAAAAA+TGG - chr3_2:87226462-87226481 Msa0434460:intron 10.0%
!! TCAATTAATGAATATAAAAT+TGG + chr3_2:87227221-87227240 None:intergenic 10.0%
!!! TTTTAACAAAAGTTTTAATT+TGG - chr3_2:87227697-87227716 Msa0434460:intron 10.0%
!! ATATATAATTGTTAATAGTT+AGG + chr3_2:87227859-87227878 None:intergenic 10.0%
!!! TAAAGTATTAAAACTCATAT+TGG + chr3_2:87223963-87223982 None:intergenic 15.0%
!! AATTCTATTCTTATTACAAA+GGG - chr3_2:87224454-87224473 Msa0434460:intron 15.0%
!!! AAATCAATTTTTATCAACAT+AGG - chr3_2:87224762-87224781 Msa0434460:intron 15.0%
!! TTACATGAATTTAATATCTT+CGG + chr3_2:87225927-87225946 None:intergenic 15.0%
!! AAATTAAGTATATCATATCA+CGG + chr3_2:87226271-87226290 None:intergenic 15.0%
!!! TATTATTGTAGATATTTTGT+TGG - chr3_2:87226692-87226711 Msa0434460:CDS 15.0%
!! ATTCTTGATATATATCTTAA+AGG - chr3_2:87226784-87226803 Msa0434460:intron 15.0%
!! TTCTTGATATATATCTTAAA+GGG - chr3_2:87226785-87226804 Msa0434460:intron 15.0%
!! AAATTGGATTTAAATGTTAA+AGG + chr3_2:87227205-87227224 None:intergenic 15.0%
!!! TTTTATATTCATTAATTGAG+AGG - chr3_2:87227222-87227241 Msa0434460:intron 15.0%
!! GTTAATAGCTAAGTTATTAA+CGG + chr3_2:87224009-87224028 None:intergenic 20.0%
!! AATGATAATAATCGTTAGAA+AGG + chr3_2:87224175-87224194 None:intergenic 20.0%
!! TAGAATTATTACATGTGTTA+AGG - chr3_2:87224358-87224377 Msa0434460:intron 20.0%
!! GAATTCTATTCTTATTACAA+AGG - chr3_2:87224453-87224472 Msa0434460:intron 20.0%
!! ATGTAAAGTGATTTATGTTT+GGG + chr3_2:87224695-87224714 None:intergenic 20.0%
!! AATGTAAAGTGATTTATGTT+TGG + chr3_2:87224696-87224715 None:intergenic 20.0%
!!! ATACATTTTTTTTTACGCTA+TGG + chr3_2:87225700-87225719 None:intergenic 20.0%
!! GAAGATATTAAATTCATGTA+AGG - chr3_2:87225926-87225945 Msa0434460:intron 20.0%
!!! TTGAAAAAATGGATTTCATT+TGG - chr3_2:87226473-87226492 Msa0434460:intron 20.0%
!! TACAATATCTAAAAAGTTCT+AGG - chr3_2:87226501-87226520 Msa0434460:intron 20.0%
!! ATATTTGAGTAATCTTCAAA+TGG + chr3_2:87226640-87226659 None:intergenic 20.0%
!! TGAAAAATTAACTTAAACAG+AGG + chr3_2:87226672-87226691 None:intergenic 20.0%
!!! AACTTTCTAAAAAATGCTTA+TGG + chr3_2:87227031-87227050 None:intergenic 20.0%
!! ACAAAAAGATTTATGTTCAA+TGG - chr3_2:87227057-87227076 Msa0434460:CDS 20.0%
!! ACAATTATATATTCAATGCT+TGG - chr3_2:87227867-87227886 Msa0434460:intron 20.0%
!!! CCATTATTTTATCTTTTCAA+GGG - chr3_2:87228014-87228033 Msa0434460:CDS 20.0%
!!! CATTATTTTATCTTTTCAAG+GGG - chr3_2:87228015-87228034 Msa0434460:CDS 20.0%
! AATGTACAATAACATCATAG+GGG + chr3_2:87224105-87224124 None:intergenic 25.0%
! CAATGTACAATAACATCATA+GGG + chr3_2:87224106-87224125 None:intergenic 25.0%
! ACAATGTACAATAACATCAT+AGG + chr3_2:87224107-87224126 None:intergenic 25.0%
!!! TAATCGTTAGAAAGGTATTA+AGG + chr3_2:87224167-87224186 None:intergenic 25.0%
!! AATTTTGTCTTCTCGAAAAA+TGG + chr3_2:87224524-87224543 None:intergenic 25.0%
! TATAATATGAAGCCAGAATT+TGG - chr3_2:87224602-87224621 Msa0434460:intron 25.0%
! TGCATTGAACAATAAATTCA+AGG + chr3_2:87224656-87224675 None:intergenic 25.0%
!! TTTTGAATGAATTGAGTTTG+TGG + chr3_2:87224745-87224764 None:intergenic 25.0%
! ATGATATAAATGCAATGACT+AGG + chr3_2:87224800-87224819 None:intergenic 25.0%
!! TTTTACAATCAAAGCAAAAC+TGG - chr3_2:87224932-87224951 Msa0434460:intron 25.0%
! CAATGCATTACATTAAATGA+TGG + chr3_2:87224961-87224980 None:intergenic 25.0%
! TCATTTATAGCTCATTCTTT+AGG - chr3_2:87225299-87225318 Msa0434460:intron 25.0%
!! TTATGAGAGAGATATTTCTA+AGG - chr3_2:87225355-87225374 Msa0434460:intron 25.0%
! TGTCATGTTAGAAAATATGA+AGG - chr3_2:87225428-87225447 Msa0434460:intron 25.0%
! AAATATGAAGGAAAAATTGC+AGG - chr3_2:87225440-87225459 Msa0434460:intron 25.0%
! GCAGACGTAATAAAATTAAT+AGG + chr3_2:87225473-87225492 None:intergenic 25.0%
! AATTTATGTCTCCTTTACTA+TGG - chr3_2:87225616-87225635 Msa0434460:intron 25.0%
!! AAAACTTCATAACATGGTTT+TGG - chr3_2:87225742-87225761 Msa0434460:CDS 25.0%
! TCTTACCATCAGTTAAAAAT+AGG + chr3_2:87225865-87225884 None:intergenic 25.0%
! TTCATGTAAGGTTTATTGTT+TGG - chr3_2:87225938-87225957 Msa0434460:intron 25.0%
!! TATGTTGTTTGTTCATGATT+CGG + chr3_2:87226001-87226020 None:intergenic 25.0%
! TATTATATCTCTTTCTCTTC+AGG - chr3_2:87226019-87226038 Msa0434460:intron 25.0%
! TGAACTAAAACAAAAGGATA+CGG + chr3_2:87226098-87226117 None:intergenic 25.0%
!! TGTTTCTGAACTAAAACAAA+AGG + chr3_2:87226104-87226123 None:intergenic 25.0%
! ACTTTAATTGGAATATGCAA+TGG + chr3_2:87226131-87226150 None:intergenic 25.0%
! AGCTTATGATTATTCACTTA+TGG - chr3_2:87226872-87226891 Msa0434460:intron 25.0%
! ATGATTATTCACTTATGGAA+AGG - chr3_2:87226877-87226896 Msa0434460:intron 25.0%
! CTTATACTAGAATGAATAGT+AGG - chr3_2:87226982-87227001 Msa0434460:intron 25.0%
!!! CGTTGAACTTTTTTTTTAGA+GGG + chr3_2:87227087-87227106 None:intergenic 25.0%
!! CCTCTAAAAAAAAAGTTCAA+CGG - chr3_2:87227085-87227104 Msa0434460:CDS 25.0%
!! GCAAAATAGTGAATTTTCAT+CGG - chr3_2:87227137-87227156 Msa0434460:intron 25.0%
!!! TAATTTTTGTTTACACACCA+AGG - chr3_2:87227247-87227266 Msa0434460:intron 25.0%
!! AATATGTCTTTTCCAATTCA+AGG + chr3_2:87227312-87227331 None:intergenic 25.0%
! TTGGAACTTCAATAAAATCA+TGG - chr3_2:87227716-87227735 Msa0434460:intron 25.0%
!!! GCCATTATTTTATCTTTTCA+AGG - chr3_2:87228013-87228032 Msa0434460:CDS 25.0%
! CCCTTGAAAAGATAAAATAA+TGG + chr3_2:87228017-87228036 None:intergenic 25.0%
!!! TCTTTTTTGTGTACAATGAA+GGG + chr3_2:87228146-87228165 None:intergenic 25.0%
!!! ATCTTTTTTGTGTACAATGA+AGG + chr3_2:87228147-87228166 None:intergenic 25.0%
! TTTCGTGTTATAATACTTCT+TGG + chr3_2:87228207-87228226 None:intergenic 25.0%
! AAGTATTATAACACGAAAGA+GGG - chr3_2:87228209-87228228 Msa0434460:CDS 25.0%
! AGAAATATGAGAAAGAACAA+GGG + chr3_2:87228316-87228335 None:intergenic 25.0%
!! TCTCATATTTCTGAAAGAAA+TGG - chr3_2:87228324-87228343 Msa0434460:CDS 25.0%
!! CTCATATTTCTGAAAGAAAT+GGG - chr3_2:87228325-87228344 Msa0434460:CDS 25.0%
!! ATTCTGAAACAACCAAACTT+GGG + chr3_2:87223817-87223836 None:intergenic 30.0%
CACTTGATCATTATGGTTAA+TGG - chr3_2:87223910-87223929 Msa0434460:three_prime_UTR 30.0%
ATTATGGTTAATGGTCTCAT+TGG - chr3_2:87223919-87223938 Msa0434460:three_prime_UTR 30.0%
TTAAGGAAGAAAAAGAAGGA+AGG + chr3_2:87224150-87224169 None:intergenic 30.0%
GGTATTAAGGAAGAAAAAGA+AGG + chr3_2:87224154-87224173 None:intergenic 30.0%
ACTAATGCAATGCATAATGT+TGG - chr3_2:87224278-87224297 Msa0434460:intron 30.0%
! TATATGCCCCAAAATTTGTT+GGG + chr3_2:87224422-87224441 None:intergenic 30.0%
TCAAGGCTAAATATTAATCG+TGG + chr3_2:87224639-87224658 None:intergenic 30.0%
!!! GATTTTTTTTACAGTTAGCG+AGG - chr3_2:87224860-87224879 Msa0434460:intron 30.0%
!!! CTTGTCTCTGAGATTTATTT+TGG - chr3_2:87224888-87224907 Msa0434460:intron 30.0%
TCTTCAACATTGACATTTGA+CGG - chr3_2:87225010-87225029 Msa0434460:intron 30.0%
TAACTGATATAACCTGAGAA+AGG + chr3_2:87225250-87225269 None:intergenic 30.0%
! ATGAAATTTTCCGAACACTT+GGG + chr3_2:87225283-87225302 None:intergenic 30.0%
! AATGAAATTTTCCGAACACT+TGG + chr3_2:87225284-87225303 None:intergenic 30.0%
TTTATAGCTCATTCTTTAGG+TGG - chr3_2:87225302-87225321 Msa0434460:intron 30.0%
AATATCTCTCTCATAAAGCT+TGG + chr3_2:87225351-87225370 None:intergenic 30.0%
! TATTTCTAAGGAACTATCTC+AGG - chr3_2:87225367-87225386 Msa0434460:intron 30.0%
! ATTTCTAAGGAACTATCTCA+GGG - chr3_2:87225368-87225387 Msa0434460:intron 30.0%
TCTAACATGACATTCTTGAT+TGG + chr3_2:87225420-87225439 None:intergenic 30.0%
GTTATTGGGGGTAATTAAAT+AGG - chr3_2:87225663-87225682 Msa0434460:CDS 30.0%
TATGTCATACTAATCTGTGT+TGG - chr3_2:87225717-87225736 Msa0434460:CDS 30.0%
TTGGTGAAAACTTCATAACA+TGG - chr3_2:87225736-87225755 Msa0434460:CDS 30.0%
! TTTGGAACTTCACATACTTT+AGG - chr3_2:87225760-87225779 Msa0434460:CDS 30.0%
!!! AAGCACCTATTTTTAACTGA+TGG - chr3_2:87225857-87225876 Msa0434460:intron 30.0%
!! TGATTTTCACAACTTGCTTA+TGG - chr3_2:87225967-87225986 Msa0434460:intron 30.0%
GTCATAACGAATATTTGCAT+AGG + chr3_2:87226076-87226095 None:intergenic 30.0%
!!! TCTCGTGTCTTTTAAAATGT+CGG + chr3_2:87226329-87226348 None:intergenic 30.0%
TTCTCACATGTTAACAAAGT+GGG + chr3_2:87226531-87226550 None:intergenic 30.0%
TTTCTCACATGTTAACAAAG+TGG + chr3_2:87226532-87226551 None:intergenic 30.0%
! ATACTTTTGCGAGATCAAAT+GGG - chr3_2:87226587-87226606 Msa0434460:intron 30.0%
!! TTTTTCCACTTTTGCTTTCA+TGG + chr3_2:87226613-87226632 None:intergenic 30.0%
TAAAGGGAGAAAATGTTCTA+AGG - chr3_2:87226801-87226820 Msa0434460:intron 30.0%
!! AAATGTTCTAAGGTCTAGTT+TGG - chr3_2:87226811-87226830 Msa0434460:intron 30.0%
AAAAGTCCAAATGAGCTTAT+AGG - chr3_2:87226905-87226924 Msa0434460:intron 30.0%
!!! CCGTTGAACTTTTTTTTTAG+AGG + chr3_2:87227088-87227107 None:intergenic 30.0%
ACATCACACCACTATTATAA+GGG + chr3_2:87227116-87227135 None:intergenic 30.0%
! TTTTCCAATTCAAGGAACAT+GGG + chr3_2:87227304-87227323 None:intergenic 30.0%
TCAAGGTTCTTAATCATTAG+AGG + chr3_2:87227361-87227380 None:intergenic 30.0%
!! AATTACATTGTTTCTGCCTT+TGG - chr3_2:87227421-87227440 Msa0434460:intron 30.0%
CAATGCTTGGATTATATTTC+AGG - chr3_2:87227880-87227899 Msa0434460:intron 30.0%
!!! CTTTTTTGTGTACAATGAAG+GGG + chr3_2:87228145-87228164 None:intergenic 30.0%
ACACAAAAAAGATTTGCCAT+TGG - chr3_2:87228154-87228173 Msa0434460:intron 30.0%
!!! ATACCTTTTTCAACTTCCAA+TGG + chr3_2:87228173-87228192 None:intergenic 30.0%
! TTGGAAGTTGAAAAAGGTAT+AGG - chr3_2:87228173-87228192 Msa0434460:intron 30.0%
! GAAGTATTATAACACGAAAG+AGG - chr3_2:87228208-87228227 Msa0434460:CDS 30.0%
TAAATTGATGAATACCACAG+AGG - chr3_2:87228237-87228256 Msa0434460:CDS 30.0%
TTTATGCTACCTATTCTACA+CGG - chr3_2:87228265-87228284 Msa0434460:CDS 30.0%
CAGAAATATGAGAAAGAACA+AGG + chr3_2:87228317-87228336 None:intergenic 30.0%
AAGTTGAAATTCCCCAAGTT+TGG - chr3_2:87223802-87223821 Msa0434460:three_prime_UTR 35.0%
!! TTCTGAAACAACCAAACTTG+GGG + chr3_2:87223816-87223835 None:intergenic 35.0%
!! GATTCTGAAACAACCAAACT+TGG + chr3_2:87223818-87223837 None:intergenic 35.0%
AGAATCCAACATGATGCTAA+AGG - chr3_2:87223832-87223851 Msa0434460:three_prime_UTR 35.0%
GAATCCAACATGATGCTAAA+GGG - chr3_2:87223833-87223852 Msa0434460:three_prime_UTR 35.0%
AATCCAACATGATGCTAAAG+GGG - chr3_2:87223834-87223853 Msa0434460:three_prime_UTR 35.0%
ATTGAAGTTGTTGATGCTTC+TGG - chr3_2:87223868-87223887 Msa0434460:three_prime_UTR 35.0%
CCATAATGATCAAGTGAGTA+GGG + chr3_2:87223906-87223925 None:intergenic 35.0%
ACCATAATGATCAAGTGAGT+AGG + chr3_2:87223907-87223926 None:intergenic 35.0%
TGTATTGCAGTGCTCATAAT+TGG - chr3_2:87224047-87224066 Msa0434460:three_prime_UTR 35.0%
CTGCAAAGCAATTTCTCAAA+AGG - chr3_2:87224077-87224096 Msa0434460:three_prime_UTR 35.0%
!! AGGAAGGTGTTAGGATTTAA+GGG + chr3_2:87224134-87224153 None:intergenic 35.0%
!! AAGGAAGGTGTTAGGATTTA+AGG + chr3_2:87224135-87224154 None:intergenic 35.0%
!! AGAAAAAGAAGGAAGGTGTT+AGG + chr3_2:87224143-87224162 None:intergenic 35.0%
! TTGTGGTCCCAACAAATTTT+GGG - chr3_2:87224412-87224431 Msa0434460:intron 35.0%
CTATATGCCCCAAAATTTGT+TGG + chr3_2:87224423-87224442 None:intergenic 35.0%
TATTACAAAGGGTGAAACCT+TGG - chr3_2:87224465-87224484 Msa0434460:intron 35.0%
GATGCAAAAACTCCAAATTC+TGG + chr3_2:87224617-87224636 None:intergenic 35.0%
!! ATTTGACGGTGTTGATGTAA+CGG - chr3_2:87225024-87225043 Msa0434460:intron 35.0%
TTTGAATCTGTGTCTGTCTT+AGG - chr3_2:87225160-87225179 Msa0434460:intron 35.0%
!!! TTTTTTCCATCTCCTTTCTC+AGG - chr3_2:87225235-87225254 Msa0434460:intron 35.0%
ATATAACCTGAGAAAGGAGA+TGG + chr3_2:87225244-87225263 None:intergenic 35.0%
! TTTCTAAGGAACTATCTCAG+GGG - chr3_2:87225369-87225388 Msa0434460:intron 35.0%
! GCATAAGCAGGTAATTCTTT+TGG - chr3_2:87225517-87225536 Msa0434460:intron 35.0%
AGTGTAATCAGCCATAGTAA+AGG + chr3_2:87225630-87225649 None:intergenic 35.0%
TGCTACAAGTGATGGTTATT+GGG - chr3_2:87225649-87225668 Msa0434460:intron 35.0%
! CTTTAGGTACCTTTGTTATG+TGG - chr3_2:87225776-87225795 Msa0434460:CDS 35.0%
GAGTGAAATCCACATAACAA+AGG + chr3_2:87225788-87225807 None:intergenic 35.0%
GTTATGTGGATTTCACTCTT+TGG - chr3_2:87225790-87225809 Msa0434460:intron 35.0%
! TACAGACAGTGGACTTTAAT+TGG + chr3_2:87226143-87226162 None:intergenic 35.0%
TCATGTAAACTTACAGACAG+TGG + chr3_2:87226154-87226173 None:intergenic 35.0%
GTCTCTACATTTACAATGTG+TGG + chr3_2:87226357-87226376 None:intergenic 35.0%
CTACTAACATTGGATTCACT+TGG + chr3_2:87226414-87226433 None:intergenic 35.0%
AGTGAATCCAATGTTAGTAG+TGG - chr3_2:87226414-87226433 Msa0434460:intron 35.0%
! ACCTTCGAAGTCAATTTTAC+CGG + chr3_2:87226442-87226461 None:intergenic 35.0%
! AGTGCTTATCTTTTGAGCTT+TGG + chr3_2:87226562-87226581 None:intergenic 35.0%
! CATACTTTTGCGAGATCAAA+TGG - chr3_2:87226586-87226605 Msa0434460:intron 35.0%
! TCAGTTGTCTTTTTCTCTTG+AGG - chr3_2:87226732-87226751 Msa0434460:CDS 35.0%
! CAGTTGTCTTTTTCTCTTGA+GGG - chr3_2:87226733-87226752 Msa0434460:CDS 35.0%
TGAACACCTATAAGCTCATT+TGG + chr3_2:87226914-87226933 None:intergenic 35.0%
CACATCACACCACTATTATA+AGG + chr3_2:87227117-87227136 None:intergenic 35.0%
CTTATAATAGTGGTGTGATG+TGG - chr3_2:87227115-87227134 Msa0434460:intron 35.0%
! CTTTTCCAATTCAAGGAACA+TGG + chr3_2:87227305-87227324 None:intergenic 35.0%
!! ATTATGCAGGCTTGTTTTCA+AGG + chr3_2:87227378-87227397 None:intergenic 35.0%
AATTCTCCATCTTCAACCAA+AGG + chr3_2:87227440-87227459 None:intergenic 35.0%
GCGAAAATATAGTGCATGTT+TGG - chr3_2:87227640-87227659 Msa0434460:intron 35.0%
GAAAATCGTCAATCATGTGT+TGG + chr3_2:87227946-87227965 None:intergenic 35.0%
TTGTTAGAAGGGGGTAATAT+AGG + chr3_2:87227983-87228002 None:intergenic 35.0%
ATTACCCCCTTCTAACAAAT+AGG - chr3_2:87227985-87228004 Msa0434460:intron 35.0%
TTACCCCCTTCTAACAAATA+GGG - chr3_2:87227986-87228005 Msa0434460:intron 35.0%
! TTACCCTATTTGTTAGAAGG+GGG + chr3_2:87227992-87228011 None:intergenic 35.0%
! CTTACCCTATTTGTTAGAAG+GGG + chr3_2:87227993-87228012 None:intergenic 35.0%
! CCTTACCCTATTTGTTAGAA+GGG + chr3_2:87227994-87228013 None:intergenic 35.0%
!! TTTATCTTTTCAAGGGGAGA+CGG - chr3_2:87228021-87228040 Msa0434460:CDS 35.0%
TTGCCATTGGAAGTTGAAAA+AGG - chr3_2:87228167-87228186 Msa0434460:intron 35.0%
ATTATGCAACCGTGTAGAAT+AGG + chr3_2:87228277-87228296 None:intergenic 35.0%
TTCTACACGGTTGCATAATT+AGG - chr3_2:87228278-87228297 Msa0434460:CDS 35.0%
TCTGAAAGAAATGGGAAGAA+TGG - chr3_2:87228333-87228352 Msa0434460:CDS 35.0%
ACAACGCTATGTTGAACCTT+GGG + chr3_2:87223736-87223755 None:intergenic 40.0%
AACAACGCTATGTTGAACCT+TGG + chr3_2:87223737-87223756 None:intergenic 40.0%
CCCTACTCACTTGATCATTA+TGG - chr3_2:87223903-87223922 Msa0434460:three_prime_UTR 40.0%
ACATAGAGACAGGTGAAACT+AGG + chr3_2:87224391-87224410 None:intergenic 40.0%
! CTTGTGGTCCCAACAAATTT+TGG - chr3_2:87224411-87224430 Msa0434460:intron 40.0%
! TGTGGTCCCAACAAATTTTG+GGG - chr3_2:87224413-87224432 Msa0434460:intron 40.0%
GCAATGACTAGGTGTTTGTT+TGG + chr3_2:87224789-87224808 None:intergenic 40.0%
!!! TGCATTGCTATTTTGCATGC+AGG - chr3_2:87224974-87224993 Msa0434460:intron 40.0%
!! TTTGACGGTGTTGATGTAAC+GGG - chr3_2:87225025-87225044 Msa0434460:intron 40.0%
AACGGGAAATAGATTAGCAG+AGG - chr3_2:87225042-87225061 Msa0434460:intron 40.0%
ATTGCACTCGCAGTTCATAT+TGG - chr3_2:87225112-87225131 Msa0434460:intron 40.0%
! AAATTTTCCGAACACTTGGG+TGG + chr3_2:87225280-87225299 None:intergenic 40.0%
TGAAGGAAAAATTGCAGGAC+TGG - chr3_2:87225445-87225464 Msa0434460:intron 40.0%
GATTACACTGCTACAAGTGA+TGG - chr3_2:87225641-87225660 Msa0434460:intron 40.0%
CTGCTACAAGTGATGGTTAT+TGG - chr3_2:87225648-87225667 Msa0434460:intron 40.0%
GCTACAAGTGATGGTTATTG+GGG - chr3_2:87225650-87225669 Msa0434460:intron 40.0%
CTACAAGTGATGGTTATTGG+GGG - chr3_2:87225651-87225670 Msa0434460:intron 40.0%
AAACAGCATCTCGTCTTTCA+CGG - chr3_2:87225816-87225835 Msa0434460:intron 40.0%
TCACGGTTTCTTGGTAAAAC+AGG - chr3_2:87225833-87225852 Msa0434460:intron 40.0%
TTCTCTTCAGGTCTGCTTTA+CGG - chr3_2:87226031-87226050 Msa0434460:CDS 40.0%
GACTCCTAAATAGAGCTAGT+TGG - chr3_2:87226181-87226200 Msa0434460:CDS 40.0%
!! CCATCCAACTAGCTCTATTT+AGG + chr3_2:87226188-87226207 None:intergenic 40.0%
CCTAAATAGAGCTAGTTGGA+TGG - chr3_2:87226185-87226204 Msa0434460:CDS 40.0%
GATGGAGCACATCATCTATA+AGG - chr3_2:87226203-87226222 Msa0434460:CDS 40.0%
! TGAGTTTTACGGTCTACCTT+TGG + chr3_2:87226244-87226263 None:intergenic 40.0%
! ATCACGGTGCATGAGTTTTA+CGG + chr3_2:87226255-87226274 None:intergenic 40.0%
!! TCCAATGTTAGTAGTGGATC+CGG - chr3_2:87226420-87226439 Msa0434460:intron 40.0%
! TCCGGTAAAATTGACTTCGA+AGG - chr3_2:87226438-87226457 Msa0434460:intron 40.0%
CGGACATACCCTTATAATAG+TGG - chr3_2:87227105-87227124 Msa0434460:intron 40.0%
! AGTGAATTTTCATCGGACGT+TGG - chr3_2:87227144-87227163 Msa0434460:intron 40.0%
TTACACACCAAGGTGTAATG+TGG - chr3_2:87227257-87227276 Msa0434460:intron 40.0%
TTGACCCATGTTCCTTGAAT+TGG - chr3_2:87227297-87227316 Msa0434460:intron 40.0%
ATCATTAGAGGATACACACG+AGG + chr3_2:87227349-87227368 None:intergenic 40.0%
GCAGATAATGTGCATTATGC+AGG + chr3_2:87227391-87227410 None:intergenic 40.0%
TTTCTGCCTTTGGTTGAAGA+TGG - chr3_2:87227431-87227450 Msa0434460:intron 40.0%
AGGCCTAACAACAGTGAATT+GGG - chr3_2:87227536-87227555 Msa0434460:intron 40.0%
GATCCCAATTCACTGTTGTT+AGG + chr3_2:87227542-87227561 None:intergenic 40.0%
TCTCGCACATAATGCAATTC+AGG - chr3_2:87227599-87227618 Msa0434460:intron 40.0%
ACCTACCGAATTAATTCCGA+CGG - chr3_2:87227908-87227927 Msa0434460:intron 40.0%
CTACTCCGTCGGAATTAATT+CGG + chr3_2:87227916-87227935 None:intergenic 40.0%
CCCTTCTAACAAATAGGGTA+AGG - chr3_2:87227991-87228010 Msa0434460:intron 40.0%
! GCCTTACCCTATTTGTTAGA+AGG + chr3_2:87227995-87228014 None:intergenic 40.0%
!! TTATCTTTTCAAGGGGAGAC+GGG - chr3_2:87228022-87228041 Msa0434460:CDS 40.0%
TACAAAGTGGCGAAGTAAGT+TGG + chr3_2:87228072-87228091 None:intergenic 40.0%
ATTATAACACGAAAGAGGGC+AGG - chr3_2:87228213-87228232 Msa0434460:CDS 40.0%
!! TAGCATAAAAGCATCCTCTG+TGG + chr3_2:87228254-87228273 None:intergenic 40.0%
GGAATCACAACAGATACCCA+AGG - chr3_2:87223717-87223736 Msa0434460:three_prime_UTR 45.0%
CATCCCCTTTAGCATCATGT+TGG + chr3_2:87223840-87223859 None:intergenic 45.0%
CAACATGATGCTAAAGGGGA+TGG - chr3_2:87223838-87223857 Msa0434460:three_prime_UTR 45.0%
TGGTTAATGGTCTCATTGGC+AGG - chr3_2:87223923-87223942 Msa0434460:three_prime_UTR 45.0%
TCACCTGTCTCTATGTCTTG+TGG - chr3_2:87224395-87224414 Msa0434460:intron 45.0%
TGGGGCATATAGTTCTTGCT+TGG - chr3_2:87224431-87224450 Msa0434460:intron 45.0%
TTGGTTGGCAAGTGTATGCT+TGG - chr3_2:87224496-87224515 Msa0434460:intron 45.0%
GGGAAATAGATTAGCAGAGG+AGG - chr3_2:87225045-87225064 Msa0434460:intron 45.0%
! GAGGAGGTGTGTGATTTCTT+TGG - chr3_2:87225061-87225080 Msa0434460:intron 45.0%
TAAAACGCCACCCAAGTGTT+CGG - chr3_2:87225270-87225289 Msa0434460:intron 45.0%
! CTTTAGGTGGCTTGATAGCA+AGG - chr3_2:87225315-87225334 Msa0434460:intron 45.0%
TCTCGTCTTTCACGGTTTCT+TGG - chr3_2:87225824-87225843 Msa0434460:intron 45.0%
! TGGAACTTCCTCTGGAAGAA+CGG + chr3_2:87226394-87226413 None:intergenic 45.0%
GATTCACTTGGAACTTCCTC+TGG + chr3_2:87226402-87226421 None:intergenic 45.0%
ACCGGATCCACTACTAACAT+TGG + chr3_2:87226424-87226443 None:intergenic 45.0%
ATGGGCCATGAAAGCAAAAG+TGG - chr3_2:87226605-87226624 Msa0434460:CDS 45.0%
!! AGAGGTACCACATTACACCT+TGG + chr3_2:87227267-87227286 None:intergenic 45.0%
AAGGTGTAATGTGGTACCTC+TGG - chr3_2:87227266-87227285 Msa0434460:intron 45.0%
AGGTGTAATGTGGTACCTCT+GGG - chr3_2:87227267-87227286 Msa0434460:intron 45.0%
AGTGATGACAATACTCGCAG+AGG - chr3_2:87227503-87227522 Msa0434460:intron 45.0%
GAGGCCTAACAACAGTGAAT+TGG - chr3_2:87227535-87227554 Msa0434460:intron 45.0%
CAGTGAGTGAAATCATTGCG+TGG - chr3_2:87227668-87227687 Msa0434460:intron 45.0%
CATCGATGACTCAAGCATGA+TGG + chr3_2:87227767-87227786 None:intergenic 45.0%
TAATAGCCTGCTCTCATCTC+TGG - chr3_2:87227818-87227837 Msa0434460:intron 45.0%
TCCGTCGGAATTAATTCGGT+AGG + chr3_2:87227912-87227931 None:intergenic 45.0%
TAATTCCGACGGAGTAGATG+TGG - chr3_2:87227919-87227938 Msa0434460:intron 45.0%
GGGAATATGCACAAACAACC+CGG + chr3_2:87228048-87228067 None:intergenic 45.0%
!! AAGTGGCGAAGTAAGTTGGT+GGG + chr3_2:87228068-87228087 None:intergenic 45.0%
! AAAGTGGCGAAGTAAGTTGG+TGG + chr3_2:87228069-87228088 None:intergenic 45.0%
! CTTACTTCGCCACTTTGTAG+TGG - chr3_2:87228073-87228092 Msa0434460:intron 45.0%
!!! CAATATTTTTTTTTTTTTTT+TGG + chr3_2:87224338-87224357 None:intergenic 5.0%
GGACCACAAGACATAGAGAC+AGG + chr3_2:87224401-87224420 None:intergenic 50.0%
!! TGAAACCTTGGTGCTGTGGT+TGG - chr3_2:87224477-87224496 Msa0434460:intron 50.0%
GCTTATGCCCTCTACAACCA+AGG + chr3_2:87225505-87225524 None:intergenic 50.0%
! TGGTTGTAGAGGGCATAAGC+AGG - chr3_2:87225505-87225524 Msa0434460:intron 50.0%
ACCTCCTCTTCTTCTCCAGA+TGG - chr3_2:87225892-87225911 Msa0434460:CDS 50.0%
ACCATCTGGAGAAGAAGAGG+AGG + chr3_2:87225896-87225915 None:intergenic 50.0%
CGAACCATCTGGAGAAGAAG+AGG + chr3_2:87225899-87225918 None:intergenic 50.0%
ATAGGCAACGCGACGTTTGA+AGG + chr3_2:87226058-87226077 None:intergenic 50.0%
GCGTAGAAACGAGCTTCCAA+AGG - chr3_2:87226225-87226244 Msa0434460:CDS 50.0%
! TCCTCTGGAAGAACGGAAGT+GGG + chr3_2:87226387-87226406 None:intergenic 50.0%
! TTCCTCTGGAAGAACGGAAG+TGG + chr3_2:87226388-87226407 None:intergenic 50.0%
GGTGTAATGTGGTACCTCTG+GGG - chr3_2:87227268-87227287 Msa0434460:intron 50.0%
GTGTAATGTGGTACCTCTGG+GGG - chr3_2:87227269-87227288 Msa0434460:intron 50.0%
TGGGTCAAATATTCCCCCAG+AGG + chr3_2:87227285-87227304 None:intergenic 50.0%
CTCGCAGAGGAAATGATCAG+AGG - chr3_2:87227516-87227535 Msa0434460:intron 50.0%
CGAATTGACGTCAGCTTCAG+TGG - chr3_2:87227561-87227580 Msa0434460:intron 50.0%
ACGTCAGCTTCAGTGGTAGT+AGG - chr3_2:87227568-87227587 Msa0434460:intron 50.0%
AAGATGCCAGAGATGAGAGC+AGG + chr3_2:87227827-87227846 None:intergenic 50.0%
TTGGACCACATCTACTCCGT+CGG + chr3_2:87227927-87227946 None:intergenic 50.0%
!! AGGGTGAAACCTTGGTGCTG+TGG - chr3_2:87224473-87224492 Msa0434460:intron 55.0%
!! ACCTTGGTGCTGTGGTTGGT+TGG - chr3_2:87224481-87224500 Msa0434460:intron 55.0%
TGCCCTCTACAACCAAGGTG+CGG + chr3_2:87225500-87225519 None:intergenic 55.0%
CTTCGGAGTCACGAACCATC+TGG + chr3_2:87225910-87225929 None:intergenic 55.0%
ACCCACTTCCGTTCTTCCAG+AGG - chr3_2:87226383-87226402 Msa0434460:intron 55.0%
! TTCGCCACTTTGTAGTGGCG+AGG - chr3_2:87228078-87228097 Msa0434460:intron 55.0%
! TCGCCACTTTGTAGTGGCGA+GGG - chr3_2:87228079-87228098 Msa0434460:intron 55.0%
AACCCCTCGCCACTACAAAG+TGG + chr3_2:87228085-87228104 None:intergenic 55.0%
GCCAACCAACCACAGCACCA+AGG + chr3_2:87224485-87224504 None:intergenic 60.0%
ACGCCGCACCTTGGTTGTAG+AGG - chr3_2:87225494-87225513 Msa0434460:intron 60.0%
CGCCGCACCTTGGTTGTAGA+GGG - chr3_2:87225495-87225514 Msa0434460:intron 60.0%
!! CTTTTCAAGGGGAGACGGGC+CGG - chr3_2:87228026-87228045 Msa0434460:CDS 60.0%
!! TTTTCAAGGGGAGACGGGCC+GGG - chr3_2:87228027-87228046 Msa0434460:CDS 60.0%
! CGCCACTTTGTAGTGGCGAG+GGG - chr3_2:87228080-87228099 Msa0434460:intron 60.0%
ACGTCTGCAACGCCGCACCT+TGG - chr3_2:87225485-87225504 Msa0434460:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 87223715 87228404 87223715 ID=Msa0434460;Name=Msa0434460
chr3_2 mRNA 87223715 87228404 87223715 ID=Msa0434460-mRNA-1;Parent=Msa0434460;Name=Msa0434460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.9|0.72|1|0.7|0.72|11|431|392
chr3_2 exon 87223715 87224217 87223715 ID=Msa0434460-mRNA-1:exon:25464;Parent=Msa0434460-mRNA-1
chr3_2 exon 87224499 87224596 87224499 ID=Msa0434460-mRNA-1:exon:25463;Parent=Msa0434460-mRNA-1
chr3_2 exon 87225660 87225795 87225660 ID=Msa0434460-mRNA-1:exon:25462;Parent=Msa0434460-mRNA-1
chr3_2 exon 87225873 87225925 87225873 ID=Msa0434460-mRNA-1:exon:25461;Parent=Msa0434460-mRNA-1
chr3_2 exon 87226023 87226078 87226023 ID=Msa0434460-mRNA-1:exon:25460;Parent=Msa0434460-mRNA-1
chr3_2 exon 87226177 87226337 87226177 ID=Msa0434460-mRNA-1:exon:25459;Parent=Msa0434460-mRNA-1
chr3_2 exon 87226593 87226798 87226593 ID=Msa0434460-mRNA-1:exon:25458;Parent=Msa0434460-mRNA-1
chr3_2 exon 87226835 87226862 87226835 ID=Msa0434460-mRNA-1:exon:25457;Parent=Msa0434460-mRNA-1
chr3_2 exon 87227053 87227123 87227053 ID=Msa0434460-mRNA-1:exon:25456;Parent=Msa0434460-mRNA-1
chr3_2 exon 87227995 87228062 87227995 ID=Msa0434460-mRNA-1:exon:25455;Parent=Msa0434460-mRNA-1
chr3_2 exon 87228175 87228404 87228175 ID=Msa0434460-mRNA-1:exon:25454;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87228175 87228404 87228175 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87227995 87228062 87227995 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87227053 87227123 87227053 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87226835 87226862 87226835 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87226593 87226798 87226593 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87226177 87226337 87226177 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87226023 87226078 87226023 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87225873 87225925 87225873 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87225660 87225795 87225660 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87224499 87224596 87224499 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 CDS 87224146 87224217 87224146 ID=Msa0434460-mRNA-1:cds;Parent=Msa0434460-mRNA-1
chr3_2 three_prime_UTR 87223715 87224145 87223715 ID=Msa0434460-mRNA-1:three_prime_utr;Parent=Msa0434460-mRNA-1
Gene Sequence

>Msa0434460

ATGGAATCACAACAGATACCCAAGGTTCAACATAGCGTTGTTGATGTACAGATCAACAACAATAACAATAAGAAGAATAAGAATAAGAAGTTGAAATTCCCCAAGTTTGGTTGTTTCAGAATCCAACATGATGCTAAAGGGGATGGTTTTGATATTGAAGTTGTTGATGCTTCTGGTCATCGTTCTAACCCTACTCACTTGATCATTATGGTTAATGGTCTCATTGGCAGTGCTCATAATTGGAAATATGCTGCAAAGCAATTTCTCAAAAGGTACCCCTATGATGTTATTGTACATTGCAGTGAATGTAATTCTTCAACATTGACATTTGACGGTGTTGATGTAACGGGAAATAGATTAGCAGAGGAGGTTATATCAGTTATAAAACGCCACCCAAGTGGCTTGATAGCAAGGTATGCAATAGCCAAGCTTTATGAGAGAGATATTTCTAAGGAACTATCTCAGGGGAATGTACATTGTGAGAGTCAGATTTCCAATCAAGAATGTCATGTTAGAAAATATGAAGGAAAAATTGCAGGACTGGAGCCTATTAATTTTATTACGTCTGCAACGCCGCACCTTGGTTGTAGAGGGCATAAGCAGGTACCTTTGTTATGTGGATTTCACTCTTTGGAGAAAACAGCATCTCGTCTTTCACGGTTTCTTGGTAAAACAGGAAAGCACCTATTTTTAACTGATGGTAAGAATGAAAAACCTCCTCTTCTTCTCCAGATGGTTCGTGACTCCGAAGATATTAAATTCATGTCTGCTTTACGGTCCTTCAAACGTCGCGTTGCCTATGCAAATATTCGTTATGACCAGCTAGTTGGATGGAGCACATCATCTATAAGGCGTAGAAACGAGCTTCCAAAGAGCCGACATTTTAAAAGACACGAGAAATATCCACACATTGTAAATGTAGAGACAACAAAACCCACTTCCGTTCTTCCAGAGGAAGTTCCAAGTGAATCCAATGTTAGTAGTGGATCCGGTAAAATTGACTTCGAAGAGGAAATGATCAGAGGCCTAACAACAGTGAATTGGGATCGAATTGACGTCAGCTTCAGTGGTAGTAGGCAAAAATATCTCGCACATAATGCAATTCAGGTTCAAACCTACCGAATTAATTCCGACGGAGTAGATGTGGTCCAACACATGATTGACGATTTTCAGTTATAG

Protein sequence

>Msa0434460

MESQQIPKVQHSVVDVQINNNNNKKNKNKKLKFPKFGCFRIQHDAKGDGFDIEVVDASGHRSNPTHLIIMVNGLIGSAHNWKYAAKQFLKRYPYDVIVHCSECNSSTLTFDGVDVTGNRLAEEVISVIKRHPSGLIARYAIAKLYERDISKELSQGNVHCESQISNQECHVRKYEGKIAGLEPINFITSATPHLGCRGHKQVPLLCGFHSLEKTASRLSRFLGKTGKHLFLTDGKNEKPPLLLQMVRDSEDIKFMSALRSFKRRVAYANIRYDQLVGWSTSSIRRRNELPKSRHFKRHEKYPHIVNVETTKPTSVLPEEVPSESNVSSGSGKIDFEEEMIRGLTTVNWDRIDVSFSGSRQKYLAHNAIQVQTYRINSDGVDVVQHMIDDFQL*