AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1328740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328740 MtrunA17_Chr8g0369231 92.222 180 14 0 1 180 93 272 2.24e-118 348
Msa1328740 MtrunA17_Chr8g0369211 89.444 180 19 0 1 180 446 625 5.79e-111 338
Msa1328740 MtrunA17_Chr2g0283111 35.556 180 106 5 5 178 430 605 2.00e-20 88.6
Msa1328740 MtrunA17_Chr2g0291501 37.766 188 104 6 4 179 448 634 1.19e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1328740 AT1G79620.4 71.186 177 51 0 2 178 482 658 1.04e-88 274
Msa1328740 AT1G79620.3 71.186 177 51 0 2 178 456 632 2.35e-88 275
Msa1328740 AT1G79620.2 71.186 177 51 0 2 178 456 632 6.93e-88 275
Msa1328740 AT1G79620.1 71.186 177 51 0 2 178 456 632 6.15e-87 275
Msa1328740 AT1G79620.5 71.186 177 51 0 2 178 482 658 7.85e-87 275
Msa1328740 AT5G49780.3 37.912 182 103 5 4 180 453 629 1.59e-25 103
Msa1328740 AT5G49760.1 41.711 187 98 6 2 180 444 627 1.54e-24 100
Msa1328740 AT5G49780.1 33.824 204 103 6 4 180 332 530 3.52e-21 91.3
Msa1328740 AT5G49780.2 33.824 204 103 6 4 180 453 651 3.86e-21 91.3
Msa1328740 AT5G49770.1 37.363 182 108 5 1 177 447 627 4.71e-17 79.3

Find 141 sgRNAs with CRISPR-Local

Find 585 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAACCGTTTCAGGATTT+TGG 0.091828 8_4:-46730616 Msa1328740:intron
GTCCTTTAATAAAGGTTTAA+TGG 0.162551 8_4:-46730764 Msa1328740:five_prime_UTR
ACCCATTAAACCTTTATTAA+AGG 0.167669 8_4:+46730762 None:intergenic
AAAGAGCTTATGGGAGAAAT+TGG 0.180785 8_4:-46727476 Msa1328740:CDS
TACAAGCCTCCACATGAATT+TGG 0.194494 8_4:-46727304 Msa1328740:CDS
GAAAACTGTCCAAACTTTAT+TGG 0.195091 8_4:-46730208 Msa1328740:five_prime_UTR
TCCATGATCTATTAGTATTA+TGG 0.199456 8_4:-46728477 Msa1328740:intron
CTTAGCATAGGTACTATTAT+TGG 0.200462 8_4:-46726929 Msa1328740:CDS
AGGAAATGCAAGGGAGTAAT+AGG 0.228888 8_4:+46727279 None:intergenic
ATTCACTTGAAAAGAGCTTA+TGG 0.247114 8_4:-46727486 Msa1328740:CDS
ATCCATCAAAAGCTCCAATT+TGG 0.262634 8_4:-46728607 Msa1328740:five_prime_UTR
ACAAGTGCTTAGCCTTTAAA+AGG 0.271696 8_4:+46730114 None:intergenic
TAGGCACATACACAACTTTC+TGG 0.281727 8_4:+46727577 None:intergenic
TGAACTAGTCCTATTGTATA+AGG 0.289132 8_4:+46729504 None:intergenic
AGGTCAGAAGTTCAAAGATT+TGG 0.290765 8_4:-46727349 Msa1328740:CDS
TCTATTAGTATTATGGAGTT+TGG 0.294515 8_4:-46728470 Msa1328740:intron
ATTGCTTCCAGAGAAATTAT+TGG 0.295857 8_4:+46726628 None:intergenic
TCCTTTAATAAAGGTTTAAT+GGG 0.312324 8_4:-46730763 Msa1328740:five_prime_UTR
TTGCTTAAGTCTCCCAGTTC+TGG 0.319541 8_4:+46730730 None:intergenic
GATAAAGTTGAAAACCAAAT+TGG 0.319561 8_4:+46728593 None:intergenic
GGGGTAGTGGAGGTTGAAAC+TGG 0.326309 8_4:+46730149 None:intergenic
TTAGCATAGGTACTATTATT+GGG 0.326853 8_4:-46726928 Msa1328740:CDS
ATTAGCCAAGCTAGTGGAAT+AGG 0.334687 8_4:+46727642 None:intergenic
AAGTAGAACATTCCTTGATA+TGG 0.338346 8_4:+46727553 None:intergenic
GGTGAATTAAGTGGAGATAT+TGG 0.345553 8_4:-46731859 Msa1328740:five_prime_UTR
CTAGTGGAATAGGGCTGTTT+AGG 0.346868 8_4:+46727652 None:intergenic
ACTTTGATTCTTTGCCTCAT+AGG 0.347319 8_4:-46726887 Msa1328740:CDS
AGGGACTTGTCCTTTAATAA+AGG 0.349948 8_4:-46730772 Msa1328740:five_prime_UTR
TTGGCAGACAATCAACTTAC+TGG 0.372085 8_4:-46730179 Msa1328740:five_prime_UTR
CTTCCTGACAGATTATTTGA+TGG 0.374109 8_4:-46729549 Msa1328740:intron
GAGGTCTAAGCCAGGGGTAG+TGG 0.374667 8_4:+46730136 None:intergenic
GGGTTCTATCTCTCCAGAAC+TGG 0.382542 8_4:-46730743 Msa1328740:five_prime_UTR
AGTAACCCTTGATTTGTTGC+AGG 0.384123 8_4:+46732016 None:intergenic
TTCACTTGAAAAGAGCTTAT+GGG 0.390725 8_4:-46727485 Msa1328740:CDS
ATCTTACCTGGAAAAGCATA+AGG 0.397143 8_4:+46727259 None:intergenic
TTAAATTCAAACAACTTCAC+TGG 0.400681 8_4:-46730251 Msa1328740:five_prime_UTR
TGGCAATATTCCAGATAGAT+TGG 0.406263 8_4:-46730577 Msa1328740:five_prime_UTR
AAGAGCTTATGGGAGAAATT+GGG 0.406947 8_4:-46727475 Msa1328740:CDS
CTAAGGTTGCTGAGATTTGA+AGG 0.408251 8_4:+46729327 None:intergenic
CTCCACTTAATTCACCCTTC+AGG 0.408750 8_4:+46731866 None:intergenic
GGCAATATTCCAGATAGATT+GGG 0.408938 8_4:-46730576 Msa1328740:five_prime_UTR
CAAGTCCAACCAATAAAGTT+TGG 0.410258 8_4:+46730199 None:intergenic
GGAAGCAATGAACTGGGCTT+TGG 0.411874 8_4:-46726614 Msa1328740:CDS
CAGTAACCTGCAACAAATCA+AGG 0.415989 8_4:-46732022 Msa1328740:five_prime_UTR
GGAAGTATACCTTATACAAT+AGG 0.416084 8_4:-46729513 Msa1328740:five_prime_UTR
ACTTACACTTGCTGTATTTG+AGG 0.416814 8_4:+46728407 None:intergenic
ATCCTTGCCACTTGGTGCCC+AGG 0.418578 8_4:+46726714 None:intergenic
TTTCTCTGGAAGCAATGAAC+TGG 0.419589 8_4:-46726621 Msa1328740:CDS
ATTGGAATAAGTAGACCATT+TGG 0.426129 8_4:-46726818 Msa1328740:intron
AAGTGCACCAATAATTTCTC+TGG 0.426448 8_4:-46726635 Msa1328740:CDS
TTAAAATATTGTCCTGTTGG+TGG 0.427515 8_4:+46727373 None:intergenic
AGACCCTTGTGGAGCACCTT+GGG 0.430198 8_4:-46734968 Msa1328740:five_prime_UTR
CGAAGGTTACTGATGAAATC+TGG 0.433096 8_4:+46728218 None:intergenic
TTAGCACACAACAGTTTGTC+AGG 0.435453 8_4:-46729199 Msa1328740:five_prime_UTR
ACTGTCCAAACTTTATTGGT+TGG 0.437382 8_4:-46730204 Msa1328740:five_prime_UTR
CTTTGATTCTTTGCCTCATA+GGG 0.441569 8_4:-46726886 Msa1328740:CDS
ATGGAGTTTGGAGCACTTGA+AGG 0.445231 8_4:-46728458 Msa1328740:five_prime_UTR
TTGTCCTCAGTTGAAGCTTG+TGG 0.449291 8_4:-46728254 Msa1328740:five_prime_UTR
TTTGCCAGACTTAACATCAA+TGG 0.449960 8_4:-46729173 Msa1328740:five_prime_UTR
TTATCCATTGATGTTAAGTC+TGG 0.455056 8_4:+46729169 None:intergenic
CAGATTTCATCAGTAACCTT+CGG 0.457646 8_4:-46728217 Msa1328740:five_prime_UTR
CAAACTTTATTGGTTGGACT+TGG 0.459716 8_4:-46730198 Msa1328740:five_prime_UTR
CTCGACAGAAATTTCTTGAC+AGG 0.462573 8_4:-46729357 Msa1328740:five_prime_UTR
GTTTAGGTTGTTGCTGATGT+TGG 0.466159 8_4:+46727668 None:intergenic
TTTGATGGAAATGATTTAAG+TGG 0.468175 8_4:-46729534 Msa1328740:five_prime_UTR
TGCTAAGAGAAGCTCCTTTG+TGG 0.476122 8_4:+46726945 None:intergenic
CATCTTGCTCCCTTCAATTG+TGG 0.476674 8_4:+46726679 None:intergenic
CTAGCACTCTTTCCACCAAC+AGG 0.477246 8_4:-46727385 Msa1328740:CDS
TGGAGGTGCACCACAATTGA+AGG 0.479997 8_4:-46726689 Msa1328740:CDS
GGCAGTAATTTGTATTAGAG+AGG 0.480070 8_4:+46727689 None:intergenic
CCTTCCCAAGGTGCTCCACA+AGG 0.483361 8_4:+46734964 None:intergenic
GGAAATGCAAGGGAGTAATA+GGG 0.484156 8_4:+46727280 None:intergenic
GCACCAAGTGGCAAGGATAG+TGG 0.485901 8_4:-46726709 Msa1328740:CDS
ACTATTATTGGGATAACAGC+TGG 0.490606 8_4:-46726917 Msa1328740:CDS
AATGTCAACCATGGGCCTGA+AGG 0.493136 8_4:-46731881 Msa1328740:five_prime_UTR
TTAGCCAAGCTAGTGGAATA+GGG 0.493882 8_4:+46727643 None:intergenic
TCCACTAGCTTGGCTAATTG+TGG 0.494049 8_4:-46727637 Msa1328740:five_prime_UTR
TGCATGTATTTCAGTCTCAT+AGG 0.494467 8_4:-46727733 Msa1328740:intron
CAATTACTTACACATAATTG+AGG 0.496345 8_4:+46729146 None:intergenic
GTTACAGTTGCTCCTTCCCA+AGG 0.500054 8_4:+46734952 None:intergenic
CCTCCACTATCCTTGCCACT+TGG 0.500842 8_4:+46726706 None:intergenic
TTGGCTGGTTGCAGCTTCAG+TGG 0.503624 8_4:-46730597 Msa1328740:five_prime_UTR
GAACTGGGCTTTGGTGGCTA+TGG 0.512748 8_4:-46726605 Msa1328740:CDS
GTTTCAACCTCCACTACCCC+TGG 0.517536 8_4:-46730146 Msa1328740:five_prime_UTR
CATATACAGCTAACCCTATG+AGG 0.520137 8_4:+46726873 None:intergenic
AGCAATGAACTGGGCTTTGG+TGG 0.522725 8_4:-46726611 Msa1328740:CDS
AAATGGTCTACTTATTCCAA+TGG 0.523796 8_4:+46726820 None:intergenic
CTATTAAAATATTGTCCTGT+TGG 0.526939 8_4:+46727370 None:intergenic
GCTAAGAGAAGCTCCTTTGT+GGG 0.528985 8_4:+46726946 None:intergenic
TAATTCACCCTTCAGGCCCA+TGG 0.534372 8_4:+46731873 None:intergenic
AAGCGCGCGGAGAAAGCCAT+TGG 0.538675 8_4:-46726836 Msa1328740:CDS
AAGACCCTTGTGGAGCACCT+TGG 0.543343 8_4:-46734969 Msa1328740:five_prime_UTR
GCAGTAATTTGTATTAGAGA+GGG 0.549491 8_4:+46727690 None:intergenic
GTCTAAGCCAGGGGTAGTGG+AGG 0.549615 8_4:+46730139 None:intergenic
GTATGTGCCTATCCATATCA+AGG 0.551615 8_4:-46727565 Msa1328740:five_prime_UTR
ACAATTCGGTGATGTTGCTA+AGG 0.552842 8_4:+46729310 None:intergenic
ATGTCAACCATGGGCCTGAA+GGG 0.558337 8_4:-46731880 Msa1328740:five_prime_UTR
ATTATTTCAGATTCCCACAA+AGG 0.562188 8_4:-46726959 Msa1328740:intron
TTTAAAAGGAGGTCTAAGCC+AGG 0.566974 8_4:+46730128 None:intergenic
TTCTCTGGAAGCAATGAACT+GGG 0.568890 8_4:-46726620 Msa1328740:CDS
GAATTAAGTGGAGATATTGG+TGG 0.572045 8_4:-46731856 Msa1328740:five_prime_UTR
ACAGCCCTATTCCACTAGCT+TGG 0.572577 8_4:-46727647 Msa1328740:five_prime_UTR
GGTTCTATCTCTCCAGAACT+GGG 0.574112 8_4:-46730742 Msa1328740:five_prime_UTR
GAAAAGCATAAGGAAATGCA+AGG 0.577688 8_4:+46727269 None:intergenic
GAACATTCCTTGATATGGAT+AGG 0.585002 8_4:+46727558 None:intergenic
GCAATATTCCAGATAGATTG+GGG 0.585469 8_4:-46730575 Msa1328740:five_prime_UTR
CAAGGAATGTTCTACTTCAG+AGG 0.585819 8_4:-46727547 Msa1328740:exon
GAGAGGGTAGCAATGCACAC+TGG 0.587274 8_4:+46727706 None:intergenic
ATCCTGGGCACCAAGTGGCA+AGG 0.602466 8_4:-46726716 Msa1328740:CDS
TAAGGTTGCTGAGATTTGAA+GGG 0.604275 8_4:+46729328 None:intergenic
AGGACTAGTTCAAACAGTTG+AGG 0.605903 8_4:-46729493 Msa1328740:five_prime_UTR
TTAAAAGGAGGTCTAAGCCA+GGG 0.606971 8_4:+46730129 None:intergenic
GGGTAGTGGAGGTTGAAACT+GGG 0.607453 8_4:+46730150 None:intergenic
GGCCTGAAGGGTGAATTAAG+TGG 0.607843 8_4:-46731868 Msa1328740:five_prime_UTR
AAAGGAGCTTCTCTTAGCAT+AGG 0.609822 8_4:-46726941 Msa1328740:CDS
CAGAAATTTCTTGACAGGAG+AGG 0.611083 8_4:-46729352 Msa1328740:five_prime_UTR
CAATACTTAATGTGAACCGA+AGG 0.612624 8_4:+46728201 None:intergenic
TCCACAATTAGCCAAGCTAG+TGG 0.612857 8_4:+46727636 None:intergenic
ATTGATGTTAAGTCTGGCAA+AGG 0.612909 8_4:+46729175 None:intergenic
GGGCTTTGGTGGCTATGGCA+AGG 0.616909 8_4:-46726600 Msa1328740:intron
CCTTGTGGAGCACCTTGGGA+AGG 0.616949 8_4:-46734964 Msa1328740:five_prime_UTR
TATAGGGGAATGTCAACCAT+GGG 0.619920 8_4:-46731889 Msa1328740:intron
CTTCCCAAGGTGCTCCACAA+GGG 0.620407 8_4:+46734965 None:intergenic
ACTAGCTTGGCTAATTGTGG+AGG 0.620620 8_4:-46727634 Msa1328740:five_prime_UTR
AGTGCTTAGCCTTTAAAAGG+AGG 0.620658 8_4:+46730117 None:intergenic
CACAATTGAAGGGAGCAAGA+TGG 0.621235 8_4:-46726678 Msa1328740:CDS
AGTAACCTGCAACAAATCAA+GGG 0.624299 8_4:-46732021 Msa1328740:five_prime_UTR
TTAGACAATTCTCTGAACAA+AGG 0.634740 8_4:+46727523 None:intergenic
CACAAATCAGAAGACCCTTG+TGG 0.636147 8_4:-46734979 Msa1328740:five_prime_UTR
GGAGGTGCACCACAATTGAA+GGG 0.640406 8_4:-46726688 Msa1328740:CDS
TAGGGTCCAAATTCATGTGG+AGG 0.646839 8_4:+46727298 None:intergenic
TAATAGGGTCCAAATTCATG+TGG 0.648181 8_4:+46727295 None:intergenic
GTGGAGGTTGAAACTGGGAG+AGG 0.652232 8_4:+46730155 None:intergenic
CCAGCATCCTGGGCACCAAG+TGG 0.659733 8_4:-46726721 Msa1328740:intron
ATATAGGGGAATGTCAACCA+TGG 0.661799 8_4:-46731890 Msa1328740:intron
CCAAGTGGCAAGGATAGTGG+AGG 0.671319 8_4:-46726706 Msa1328740:CDS
TAAAAGGAGGTCTAAGCCAG+GGG 0.676024 8_4:+46730130 None:intergenic
AAATCCACAAGCTTCAACTG+AGG 0.685212 8_4:+46728250 None:intergenic
AAAAGCATAAGGAAATGCAA+GGG 0.698244 8_4:+46727270 None:intergenic
AATCCTGCAAAAGAAGCGCG+CGG 0.706831 8_4:-46726849 Msa1328740:CDS
CAATATTCCAGATAGATTGG+GGG 0.728079 8_4:-46730574 Msa1328740:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATAATATTTTTATAAATT+TGG + chr8_4:46728277-46728296 None:intergenic 0.0%
!!! ACCAATTTTTATTTTAAATT+CGG - chr8_4:46726979-46726998 Msa1328740:intron 10.0%
!! ATATTATTTATTAGAATATG+AGG + chr8_4:46727666-46727685 None:intergenic 10.0%
!!! ATAGATATATATTTGTTATT+TGG + chr8_4:46727715-46727734 None:intergenic 10.0%
!!! ATATTTTTTAAATTAGTAGT+AGG + chr8_4:46728044-46728063 None:intergenic 10.0%
!! ACTACTAATTTAAAAAATAT+AGG - chr8_4:46728044-46728063 Msa1328740:intron 10.0%
!! CTACTAATTTAAAAAATATA+GGG - chr8_4:46728045-46728064 Msa1328740:intron 10.0%
!! TACTAATTTAAAAAATATAG+GGG - chr8_4:46728046-46728065 Msa1328740:intron 10.0%
!! AATTTAAAAGATGAAAATTA+TGG + chr8_4:46731622-46731641 None:intergenic 10.0%
!! TTAAAAAAAAAAATACTGTT+TGG + chr8_4:46731904-46731923 None:intergenic 10.0%
!! AATTAAGAAATTTCTATGTT+GGG + chr8_4:46725034-46725053 None:intergenic 15.0%
!! TAATTAAGAAATTTCTATGT+TGG + chr8_4:46725035-46725054 None:intergenic 15.0%
!!! TTATTCCATTTATGATTTTA+AGG + chr8_4:46725102-46725121 None:intergenic 15.0%
!! AGATATGATTAATGAATTAT+AGG + chr8_4:46725519-46725538 None:intergenic 15.0%
!!! AAATAAAAATTGGTATTGAT+CGG + chr8_4:46726973-46726992 None:intergenic 15.0%
!!! TCCGAATTTAAAATAAAAAT+TGG + chr8_4:46726983-46727002 None:intergenic 15.0%
!! TATTATAAATATAGAAGCTT+AGG + chr8_4:46727558-46727577 None:intergenic 15.0%
!!! TATTTTGTTATGTTATATGT+TGG + chr8_4:46727770-46727789 None:intergenic 15.0%
!! TATTTATATGATGTATATGA+GGG + chr8_4:46727855-46727874 None:intergenic 15.0%
!! ATATTTATATGATGTATATG+AGG + chr8_4:46727856-46727875 None:intergenic 15.0%
!!! TCTCTTTTTTTTTTTCTTTT+CGG + chr8_4:46728955-46728974 None:intergenic 15.0%
!! AAAAAAAAAAGAGACTAAAT+TGG - chr8_4:46728961-46728980 Msa1328740:intron 15.0%
!!! AACTTTTAGTAATTTTCATA+AGG - chr8_4:46729305-46729324 Msa1328740:intron 15.0%
!! AAAGAAAGAAAAAAAAAAAC+TGG + chr8_4:46729868-46729887 None:intergenic 15.0%
!!! ATTTGAAACAATTAACAAAA+AGG + chr8_4:46730560-46730579 None:intergenic 15.0%
!! ATCATATCATATCATATTAA+AGG + chr8_4:46731247-46731266 None:intergenic 15.0%
!!! AATTTTCATCTTTTAAATTC+AGG - chr8_4:46731623-46731642 Msa1328740:intron 15.0%
!!! CAAATAACATTAACTTTTTA+TGG - chr8_4:46732112-46732131 Msa1328740:intron 15.0%
!! ATCAAACAATAAAAGAAAAA+TGG + chr8_4:46733679-46733698 None:intergenic 15.0%
!! ATCAAACAATAAAAGAAAAA+TGG + chr8_4:46733679-46733698 None:intergenic 15.0%
!! TCTTTCCTTAAAATCATAAA+TGG - chr8_4:46725094-46725113 Msa1328740:intron 20.0%
!!! TTATGTTGAATGATTTTTGA+AGG + chr8_4:46725137-46725156 None:intergenic 20.0%
!! AAGAATAATGATACTAGTTA+AGG + chr8_4:46725556-46725575 None:intergenic 20.0%
!! ATTAAGATGCTATGATTAAA+AGG + chr8_4:46725666-46725685 None:intergenic 20.0%
!! TGATATATAATGTTATGAGA+TGG + chr8_4:46725733-46725752 None:intergenic 20.0%
!! ATTGTTTGTGATTATGTTTA+TGG + chr8_4:46725757-46725776 None:intergenic 20.0%
!!! ATGTTTGATTTTGTTTATGA+TGG + chr8_4:46725908-46725927 None:intergenic 20.0%
!!! ATATTAAAACCTGTATTGAT+CGG + chr8_4:46727166-46727185 None:intergenic 20.0%
!!! CAGGTTTTAATATCAAAATT+CGG - chr8_4:46727173-46727192 Msa1328740:intron 20.0%
!!! AGGTTTTAATATCAAAATTC+GGG - chr8_4:46727174-46727193 Msa1328740:intron 20.0%
!!! TTATAAATTTGGAACTGAAT+TGG + chr8_4:46728266-46728285 None:intergenic 20.0%
!!! TTATAAATTTGGAACTGAAT+TGG + chr8_4:46728266-46728285 None:intergenic 20.0%
!!! CAGATTTTGTTTTAAATAGA+GGG - chr8_4:46728790-46728809 Msa1328740:intron 20.0%
!!! AGATTTTGTTTTAAATAGAG+GGG - chr8_4:46728791-46728810 Msa1328740:intron 20.0%
!!! AAGTATTGTAATTGTGATTA+TGG + chr8_4:46729045-46729064 None:intergenic 20.0%
!!! TTTTATGACTAAAACTAAGT+TGG + chr8_4:46729092-46729111 None:intergenic 20.0%
!! TAATATGCAAATACATTGTA+TGG + chr8_4:46729134-46729153 None:intergenic 20.0%
!! TCCTTTAATAAAGGTTTAAT+GGG - chr8_4:46729187-46729206 Msa1328740:five_prime_UTR 20.0%
!!! GTTACTGATGTTTTAAAAAT+TGG - chr8_4:46729447-46729466 Msa1328740:intron 20.0%
!!! AAAGCTTGTTTTTATTGAAA+TGG + chr8_4:46730034-46730053 None:intergenic 20.0%
!!! TTAAGCTTTTTATCCAAATA+GGG - chr8_4:46730325-46730344 Msa1328740:intron 20.0%
!! TTCAGTATAATGAAAATAAC+TGG + chr8_4:46730521-46730540 None:intergenic 20.0%
!!! GGATTTTATAATAACATCAA+TGG - chr8_4:46730696-46730715 Msa1328740:intron 20.0%
!! ATGAAAATCATTTCTCTTAT+AGG + chr8_4:46730857-46730876 None:intergenic 20.0%
!!! GTTAATTAAGTCCATATTTT+TGG - chr8_4:46731071-46731090 Msa1328740:intron 20.0%
!! AACTTCATTAACCAAAAATA+TGG + chr8_4:46731085-46731104 None:intergenic 20.0%
!! ATCAATAGATAATGTTATGT+AGG - chr8_4:46731298-46731317 Msa1328740:intron 20.0%
!! TCAATAGATAATGTTATGTA+GGG - chr8_4:46731299-46731318 Msa1328740:intron 20.0%
!! TAAGTATAAACTACAAACAT+TGG - chr8_4:46731587-46731606 Msa1328740:intron 20.0%
!!! GTTTTTAATCTAACATACTT+AGG - chr8_4:46731771-46731790 Msa1328740:intron 20.0%
!! GAAATAGATAAAGTTATCAA+AGG + chr8_4:46732026-46732045 None:intergenic 20.0%
!!! TATTGTATTTTTATCTTACC+TGG + chr8_4:46732706-46732725 None:intergenic 20.0%
!!! AACCACTTTTTTTTTTTACA+GGG - chr8_4:46733648-46733667 Msa1328740:intron 20.0%
!! AACAATAAAAGAAAAATGGT+TGG + chr8_4:46733675-46733694 None:intergenic 20.0%
!!! CCACTTTTTTTTTTTTTACA+GGG - chr8_4:46733704-46733723 Msa1328740:intron 20.0%
!! AACAATAAAAGAAAAATGGT+TGG + chr8_4:46733675-46733694 None:intergenic 20.0%
!! TTAAACAATTTAACTCTGTA+AGG - chr8_4:46734316-46734335 Msa1328740:intron 20.0%
!!! AATTAACTTGGTTGTTTATA+TGG - chr8_4:46734603-46734622 Msa1328740:intron 20.0%
!! TTCAACTGAATAAAACAAAA+TGG - chr8_4:46734894-46734913 Msa1328740:intron 20.0%
! AAATTTCTATGTTGGGAAAA+CGG + chr8_4:46725027-46725046 None:intergenic 25.0%
!!! CAGAGTTTTTCAACATAAAA+CGG - chr8_4:46725061-46725080 Msa1328740:intron 25.0%
! AACATCATAGAAATAGTCTT+TGG - chr8_4:46725188-46725207 Msa1328740:intron 25.0%
! GAGAATTATAATGAAGTTGT+CGG + chr8_4:46725272-46725291 None:intergenic 25.0%
! TCTCATAAAAACAATACGTA+AGG - chr8_4:46725288-46725307 Msa1328740:intron 25.0%
! ATGAAGTATATGACTAATGT+AGG + chr8_4:46725579-46725598 None:intergenic 25.0%
!! ATTTTCATGATGATCAAAGA+TGG + chr8_4:46726106-46726125 None:intergenic 25.0%
! TTTGACATGAAAATATGTTG+TGG + chr8_4:46726690-46726709 None:intergenic 25.0%
! GTTATGATGAAAATACTACA+GGG + chr8_4:46726852-46726871 None:intergenic 25.0%
! AGTTATGATGAAAATACTAC+AGG + chr8_4:46726853-46726872 None:intergenic 25.0%
! GATTTATAGAACTTGAGTTA+TGG + chr8_4:46727061-46727080 None:intergenic 25.0%
! ATAATCCATAGGATGATTAT+TGG + chr8_4:46727260-46727279 None:intergenic 25.0%
! TTGTGAGAATTTGAGAATTA+GGG + chr8_4:46727355-46727374 None:intergenic 25.0%
! TTTGTGAGAATTTGAGAATT+AGG + chr8_4:46727356-46727375 None:intergenic 25.0%
! TAGATTACATCTAACAAGTT+GGG + chr8_4:46727384-46727403 None:intergenic 25.0%
! TTAGATTACATCTAACAAGT+TGG + chr8_4:46727385-46727404 None:intergenic 25.0%
! ATAAATATAGAAGCTTAGGT+TGG + chr8_4:46727554-46727573 None:intergenic 25.0%
! TATTCTTCCCAAATCTATTT+AGG - chr8_4:46727584-46727603 Msa1328740:five_prime_UTR 25.0%
! AGAAAGAAGAATAAGTTGTT+GGG + chr8_4:46727610-46727629 None:intergenic 25.0%
! TAGAAAGAAGAATAAGTTGT+TGG + chr8_4:46727611-46727630 None:intergenic 25.0%
! TTATTATTCCTTGTGAACTT+TGG - chr8_4:46727983-46728002 Msa1328740:intron 25.0%
! TTAATATACCAAAGTTCACA+AGG + chr8_4:46727994-46728013 None:intergenic 25.0%
! GACAAATTCGATATACTTTA+AGG - chr8_4:46728524-46728543 Msa1328740:intron 25.0%
!!! GCAGATTTTGTTTTAAATAG+AGG - chr8_4:46728789-46728808 Msa1328740:intron 25.0%
!!! GATTTTGTTTTAAATAGAGG+GGG - chr8_4:46728792-46728811 Msa1328740:intron 25.0%
!!! CTAAAACTAAGTTGGTATTA+TGG + chr8_4:46729084-46729103 None:intergenic 25.0%
! GTCCTTTAATAAAGGTTTAA+TGG - chr8_4:46729186-46729205 Msa1328740:five_prime_UTR 25.0%
! ACCCATTAAACCTTTATTAA+AGG + chr8_4:46729191-46729210 None:intergenic 25.0%
!! GATTTAAAATTAACCGTTTC+AGG - chr8_4:46729327-46729346 Msa1328740:five_prime_UTR 25.0%
!! ACGTCTTATTGAATTATTCA+GGG - chr8_4:46729674-46729693 Msa1328740:intron 25.0%
! TTAAATTCAAACAACTTCAC+TGG - chr8_4:46729699-46729718 Msa1328740:intron 25.0%
! TTCAATAAAAACAAGCTTTC+TGG - chr8_4:46730035-46730054 Msa1328740:intron 25.0%
!! AAGTTTACATTTTCGATGTT+TGG - chr8_4:46730108-46730127 Msa1328740:intron 25.0%
! CAAGAAGAAAAACTCAAATA+AGG + chr8_4:46730138-46730157 None:intergenic 25.0%
!! GTTAAGCTTTTTATCCAAAT+AGG - chr8_4:46730324-46730343 Msa1328740:intron 25.0%
! AAGCTTATAAAAACCTCAAA+TGG + chr8_4:46730351-46730370 None:intergenic 25.0%
! TTTGATGGAAATGATTTAAG+TGG - chr8_4:46730416-46730435 Msa1328740:intron 25.0%
! TGTTTCAAATTTATGACAGT+CGG - chr8_4:46730570-46730589 Msa1328740:five_prime_UTR 25.0%
! AAATCTAAGTTCTCACAATT+CGG + chr8_4:46730657-46730676 None:intergenic 25.0%
! CAATTACTTACACATAATTG+AGG + chr8_4:46730807-46730826 None:intergenic 25.0%
! CTCAATTATGTGTAAGTAAT+TGG - chr8_4:46730805-46730824 Msa1328740:intron 25.0%
! TCGTGAATATTGTTGAAATT+TGG + chr8_4:46730884-46730903 None:intergenic 25.0%
!! CTTAATTAACCTCAATTTTG+AGG + chr8_4:46731061-46731080 None:intergenic 25.0%
! GGTTAATGAAGTTATGTAAA+TGG - chr8_4:46731092-46731111 Msa1328740:intron 25.0%
! AGTTAATTAGGTTCAATGAT+TGG + chr8_4:46731144-46731163 None:intergenic 25.0%
! GTTATTTGCACAACAAAAAT+TGG + chr8_4:46731215-46731234 None:intergenic 25.0%
! GATAAAGTTGAAAACCAAAT+TGG + chr8_4:46731360-46731379 None:intergenic 25.0%
! TTTGTAAATTACTTACAGAG+TGG + chr8_4:46731391-46731410 None:intergenic 25.0%
!! TAGATTTGATAACTTGACAA+GGG + chr8_4:46731432-46731451 None:intergenic 25.0%
!! TTAGATTTGATAACTTGACA+AGG + chr8_4:46731433-46731452 None:intergenic 25.0%
! TCAAGTTATCAAATCTAACA+AGG - chr8_4:46731435-46731454 Msa1328740:intron 25.0%
! TCCATGATCTATTAGTATTA+TGG - chr8_4:46731473-46731492 Msa1328740:intron 25.0%
! TCCATAATACTAATAGATCA+TGG + chr8_4:46731477-46731496 None:intergenic 25.0%
! TCTATTAGTATTATGGAGTT+TGG - chr8_4:46731480-46731499 Msa1328740:intron 25.0%
! TAAAAACAATGCATGTCAAA+CGG + chr8_4:46731854-46731873 None:intergenic 25.0%
!! TCTTTTCCATAAAAGAAGTT+AGG - chr8_4:46731878-46731897 Msa1328740:five_prime_UTR 25.0%
!!! CTGACTTATTTTGGTATTAA+AGG + chr8_4:46732138-46732157 None:intergenic 25.0%
!!! TTACAAAACCCTTTTTTCAA+TGG - chr8_4:46732520-46732539 Msa1328740:intron 25.0%
! AATCATCACCATTGAAAAAA+GGG + chr8_4:46732531-46732550 None:intergenic 25.0%
! TAATCATCACCATTGAAAAA+AGG + chr8_4:46732532-46732551 None:intergenic 25.0%
! CTATTAAAATATTGTCCTGT+TGG + chr8_4:46732583-46732602 None:intergenic 25.0%
!!! CAACAGGACAATATTTTAAT+AGG - chr8_4:46732581-46732600 Msa1328740:intron 25.0%
! TTAGCATAGGTACTATTATT+GGG - chr8_4:46733022-46733041 Msa1328740:intron 25.0%
! ATATCAAGTGTCTATCTATT+TGG - chr8_4:46733497-46733516 Msa1328740:intron 25.0%
! CTGTAAAAAAAAAAAGTGGT+TGG + chr8_4:46733649-46733668 None:intergenic 25.0%
!!! CAACCACTTTTTTTTTTTAC+AGG - chr8_4:46733647-46733666 Msa1328740:intron 25.0%
!!! GCCACTTTTTTTTTTTTTAC+AGG - chr8_4:46733703-46733722 Msa1328740:intron 25.0%
! CCCTGTAAAAAAAAAAAAAG+TGG + chr8_4:46733707-46733726 None:intergenic 25.0%
!! GTTTTGTAATTCTCTACTAT+TGG - chr8_4:46733881-46733900 Msa1328740:intron 25.0%
! GTTTATGAATTTATCCCTAA+TGG - chr8_4:46734084-46734103 Msa1328740:intron 25.0%
! TTCACGAATAAAATTAGTGA+AGG - chr8_4:46734199-46734218 Msa1328740:intron 25.0%
! TTAAATTGTTTAACTATCGC+AGG + chr8_4:46734309-46734328 None:intergenic 25.0%
! TCATCTGCATATGATATAAT+AGG + chr8_4:46734463-46734482 None:intergenic 25.0%
!!! AAGTTTTTCAACATCAATCA+AGG - chr8_4:46734768-46734787 Msa1328740:intron 25.0%
!!! AGTTTTTCAACATCAATCAA+GGG - chr8_4:46734769-46734788 Msa1328740:intron 25.0%
AATTTCTATGTTGGGAAAAC+GGG + chr8_4:46725026-46725045 None:intergenic 30.0%
AGTATTTCAAAACTTTGCAG+CGG - chr8_4:46725156-46725175 Msa1328740:intron 30.0%
TTTATGAGACCTTTATGATG+AGG + chr8_4:46725222-46725241 None:intergenic 30.0%
CCTCGTGATTATATTTAAGA+TGG + chr8_4:46725780-46725799 None:intergenic 30.0%
CCATCTTAAATATAATCACG+AGG - chr8_4:46725777-46725796 Msa1328740:intron 30.0%
! AGCTTTTGCTCAATTATGTT+GGG + chr8_4:46726230-46726249 None:intergenic 30.0%
GCATACTCATTTAAAGATGA+GGG + chr8_4:46726354-46726373 None:intergenic 30.0%
TGCATACTCATTTAAAGATG+AGG + chr8_4:46726355-46726374 None:intergenic 30.0%
CATCTTTAAATGAGTATGCA+TGG - chr8_4:46726355-46726374 Msa1328740:intron 30.0%
TTTGACGTGAAAATGATGTT+TGG + chr8_4:46726882-46726901 None:intergenic 30.0%
! TAATTTTGTCAGCTTTCTAG+TGG + chr8_4:46726911-46726930 None:intergenic 30.0%
! TAGGTCACAGTGAATTTTTA+TGG + chr8_4:46727023-46727042 None:intergenic 30.0%
AAACACAAAAGTTGTAGGTA+TGG + chr8_4:46727122-46727141 None:intergenic 30.0%
!! GATTATTGGAAGTAGTTTTG+AGG + chr8_4:46727246-46727265 None:intergenic 30.0%
TACTTCCAATAATCATCCTA+TGG - chr8_4:46727252-46727271 Msa1328740:intron 30.0%
! ATCATCCTATGGATTATCTA+AGG - chr8_4:46727263-46727282 Msa1328740:intron 30.0%
AGATTACATCTAACAAGTTG+GGG + chr8_4:46727383-46727402 None:intergenic 30.0%
CTGATTCAGGAATTAATCTA+AGG + chr8_4:46727451-46727470 None:intergenic 30.0%
! TTATTAGTGTGAGTGGATTT+GGG + chr8_4:46727642-46727661 None:intergenic 30.0%
! ATTATTAGTGTGAGTGGATT+TGG + chr8_4:46727643-46727662 None:intergenic 30.0%
! TAGGAAAAGTGTGAGTAAAA+GGG + chr8_4:46728025-46728044 None:intergenic 30.0%
CACATAAAACAACACTTACA+AGG + chr8_4:46728137-46728156 None:intergenic 30.0%
! ATTCGATATACTTTAAGGAC+TGG - chr8_4:46728529-46728548 Msa1328740:intron 30.0%
AAAAATCCTGTGCATTTGTT+CGG + chr8_4:46728558-46728577 None:intergenic 30.0%
TTGGATGGAAATTGTTACTA+TGG - chr8_4:46728693-46728712 Msa1328740:intron 30.0%
!!! TTTTCTGGTTTTTAGTAGCA+GGG - chr8_4:46728749-46728768 Msa1328740:intron 30.0%
!!! TGCAATTTGTTTTGGATTGA+TGG - chr8_4:46728854-46728873 Msa1328740:intron 30.0%
AATGACATTGGGAAATTAAC+AGG + chr8_4:46729277-46729296 None:intergenic 30.0%
GTTTCACTTGAAATGACATT+GGG + chr8_4:46729288-46729307 None:intergenic 30.0%
AGTTTCACTTGAAATGACAT+TGG + chr8_4:46729289-46729308 None:intergenic 30.0%
! AATTAACCGTTTCAGGATTT+TGG - chr8_4:46729334-46729353 Msa1328740:five_prime_UTR 30.0%
TAAAAATTGGATGAACTAGC+TGG - chr8_4:46729460-46729479 Msa1328740:intron 30.0%
! AACTAGCTGGTTTAATAAGT+TGG - chr8_4:46729473-46729492 Msa1328740:intron 30.0%
TATAACAGGATCAAACCAAT+TGG + chr8_4:46729507-46729526 None:intergenic 30.0%
GATCCTGTTATATTGTAGAA+CGG - chr8_4:46729515-46729534 Msa1328740:five_prime_UTR 30.0%
ATATTGTAGAACGGTTGAAT+CGG - chr8_4:46729524-46729543 Msa1328740:five_prime_UTR 30.0%
!!! GAACGTTTTAAAAGCAGAAT+TGG + chr8_4:46729603-46729622 None:intergenic 30.0%
! CACGTCTTATTGAATTATTC+AGG - chr8_4:46729673-46729692 Msa1328740:intron 30.0%
GAAAACTGTCCAAACTTTAT+TGG - chr8_4:46729742-46729761 Msa1328740:intron 30.0%
!! ACATCTGTGAGTACTTTTTA+GGG - chr8_4:46729902-46729921 Msa1328740:five_prime_UTR 30.0%
CATCACAAAAATTGAGAGTT+GGG + chr8_4:46730379-46730398 None:intergenic 30.0%
ACATCACAAAAATTGAGAGT+TGG + chr8_4:46730380-46730399 None:intergenic 30.0%
TTTCCATCAAATAATCTGTC+AGG + chr8_4:46730407-46730426 None:intergenic 30.0%
! GGAAGTATACCTTATACAAT+AGG - chr8_4:46730437-46730456 Msa1328740:intron 30.0%
TGAACTAGTCCTATTGTATA+AGG + chr8_4:46730449-46730468 None:intergenic 30.0%
TTGAGACACGGATATATAAA+AGG - chr8_4:46730675-46730694 Msa1328740:intron 30.0%
TTATCCATTGATGTTAAGTC+TGG + chr8_4:46730784-46730803 None:intergenic 30.0%
TGCTTCATTAACCATGAATT+AGG - chr8_4:46731002-46731021 Msa1328740:intron 30.0%
TCATTAACCATGAATTAGGA+AGG - chr8_4:46731006-46731025 Msa1328740:intron 30.0%
CATTAACCATGAATTAGGAA+GGG - chr8_4:46731007-46731026 Msa1328740:intron 30.0%
ATTAACCATGAATTAGGAAG+GGG - chr8_4:46731008-46731027 Msa1328740:intron 30.0%
GTTCACATAAGCAGTTAATT+AGG + chr8_4:46731156-46731175 None:intergenic 30.0%
! TTTTGCGACAACAATATAAG+TGG + chr8_4:46731187-46731206 None:intergenic 30.0%
! CTTTTCAAAAAGAAGTTGAG+AGG - chr8_4:46731977-46731996 Msa1328740:intron 30.0%
!! CTATTTGGACTGACTTATTT+TGG + chr8_4:46732147-46732166 None:intergenic 30.0%
CAAATGAAAGAGGTTCTATT+TGG + chr8_4:46732162-46732181 None:intergenic 30.0%
! GCAGTAATTTGTATTAGAGA+GGG + chr8_4:46732263-46732282 None:intergenic 30.0%
AAGTAGAACATTCCTTGATA+TGG + chr8_4:46732400-46732419 None:intergenic 30.0%
TTAGACAATTCTCTGAACAA+AGG + chr8_4:46732430-46732449 None:intergenic 30.0%
!!! ATAAGCTCTTTTCAAGTGAA+TGG + chr8_4:46732465-46732484 None:intergenic 30.0%
ATTCACTTGAAAAGAGCTTA+TGG - chr8_4:46732464-46732483 Msa1328740:intron 30.0%
TTCACTTGAAAAGAGCTTAT+GGG - chr8_4:46732465-46732484 Msa1328740:intron 30.0%
! TTTTGTAAAGAAACTGAAGC+AGG + chr8_4:46732508-46732527 None:intergenic 30.0%
TTAAAATATTGTCCTGTTGG+TGG + chr8_4:46732580-46732599 None:intergenic 30.0%
! AAAAGCATAAGGAAATGCAA+GGG + chr8_4:46732683-46732702 None:intergenic 30.0%
GTAAATCACAATATCGCATT+AGG + chr8_4:46732815-46732834 None:intergenic 30.0%
ATTATTTCAGATTCCCACAA+AGG - chr8_4:46732991-46733010 Msa1328740:intron 30.0%
CTTAGCATAGGTACTATTAT+TGG - chr8_4:46733021-46733040 Msa1328740:intron 30.0%
AAATGGTCTACTTATTCCAA+TGG + chr8_4:46733133-46733152 None:intergenic 30.0%
ATTGGAATAAGTAGACCATT+TGG - chr8_4:46733132-46733151 Msa1328740:intron 30.0%
TGAGAACTTCAATTACCAAA+TGG + chr8_4:46733150-46733169 None:intergenic 30.0%
ATTGCTTCCAGAGAAATTAT+TGG + chr8_4:46733325-46733344 None:intergenic 30.0%
! TTTGTGTTAACATCTAGTTC+AGG - chr8_4:46733380-46733399 Msa1328740:intron 30.0%
TCATGGTTATCAATATCTTC+CGG - chr8_4:46733415-46733434 Msa1328740:intron 30.0%
GTCCCTGTAAAAAAAAAAAG+TGG + chr8_4:46733653-46733672 None:intergenic 30.0%
GTAGAGAATTACAAAACTCA+TGG + chr8_4:46733878-46733897 None:intergenic 30.0%
CAATTTCATTCTTGAACTCT+AGG + chr8_4:46733987-46734006 None:intergenic 30.0%
AAGTTAAGCTTACTCTCTAA+AGG - chr8_4:46734162-46734181 Msa1328740:intron 30.0%
AATTAGTGAAGGAACACTAA+AGG - chr8_4:46734210-46734229 Msa1328740:intron 30.0%
! ACTAAGACTTTCCTTGATTT+TGG - chr8_4:46734240-46734259 Msa1328740:intron 30.0%
! CTAAGACTTTCCTTGATTTT+GGG - chr8_4:46734241-46734260 Msa1328740:intron 30.0%
TAATCGAGTAAGCAAAATTG+CGG + chr8_4:46734637-46734656 None:intergenic 30.0%
TCGTTAGAATTACAATGGAA+AGG - chr8_4:46734793-46734812 Msa1328740:intron 30.0%
ATTTCTATGTTGGGAAAACG+GGG + chr8_4:46725025-46725044 None:intergenic 35.0%
CATGAAAATGCAAATGCATG+TGG - chr8_4:46726117-46726136 Msa1328740:intron 35.0%
! CTTTTGCTCAATTATGTTGG+GGG + chr8_4:46726228-46726247 None:intergenic 35.0%
! GCTTTTGCTCAATTATGTTG+GGG + chr8_4:46726229-46726248 None:intergenic 35.0%
! GAGCTTTTGCTCAATTATGT+TGG + chr8_4:46726231-46726250 None:intergenic 35.0%
ATAATTGAGCAAAAGCTCCT+AGG - chr8_4:46726233-46726252 Msa1328740:intron 35.0%
TAATTGAGCAAAAGCTCCTA+GGG - chr8_4:46726234-46726253 Msa1328740:intron 35.0%
CTTAGCATCATGACAACATA+TGG - chr8_4:46726501-46726520 Msa1328740:intron 35.0%
GAGGTCTTAGCAAAATTGTA+CGG + chr8_4:46726830-46726849 None:intergenic 35.0%
ATGATGAAAATACTACAGGG+AGG + chr8_4:46726849-46726868 None:intergenic 35.0%
GGTGTAAACACAAAAGTTGT+AGG + chr8_4:46727127-46727146 None:intergenic 35.0%
ACAGACCTTAGATAATCCAT+AGG + chr8_4:46727271-46727290 None:intergenic 35.0%
! CAGGAATTAATCTAAGGTGA+GGG + chr8_4:46727445-46727464 None:intergenic 35.0%
! TCAGGAATTAATCTAAGGTG+AGG + chr8_4:46727446-46727465 None:intergenic 35.0%
! TTCTCCTCTTTTCCAAAAAG+CGG - chr8_4:46727511-46727530 Msa1328740:CDS 35.0%
!!! TAAACCGCTTTTTGGAAAAG+AGG + chr8_4:46727518-46727537 None:intergenic 35.0%
! CTTTTCCAAAAAGCGGTTTA+AGG - chr8_4:46727518-46727537 Msa1328740:CDS 35.0%
!! GTTTACCTTAAACCGCTTTT+TGG + chr8_4:46727526-46727545 None:intergenic 35.0%
TGTTGGGCCTAAATAGATTT+GGG + chr8_4:46727594-46727613 None:intergenic 35.0%
TTGTTGGGCCTAAATAGATT+TGG + chr8_4:46727595-46727614 None:intergenic 35.0%
! TATTAGTGTGAGTGGATTTG+GGG + chr8_4:46727641-46727660 None:intergenic 35.0%
ATGAGGATTATTAGTGTGAG+TGG + chr8_4:46727649-46727668 None:intergenic 35.0%
AGTAACCTGCAACAAATCAA+GGG - chr8_4:46727929-46727948 Msa1328740:intron 35.0%
! GTAGGAAAAGTGTGAGTAAA+AGG + chr8_4:46728026-46728045 None:intergenic 35.0%
GGTGAATTAAGTGGAGATAT+TGG - chr8_4:46728091-46728110 Msa1328740:intron 35.0%
GAATTAAGTGGAGATATTGG+TGG - chr8_4:46728094-46728113 Msa1328740:intron 35.0%
GAAACCAAAGACTAGCATTA+TGG - chr8_4:46728172-46728191 Msa1328740:intron 35.0%
GAAACCAAAGACTAGCATTA+TGG - chr8_4:46728172-46728191 Msa1328740:intron 35.0%
! GAACAAATGCACAGGATTTT+TGG - chr8_4:46728557-46728576 Msa1328740:intron 35.0%
CAGAATGTATATCTGCTGTT+AGG - chr8_4:46728634-46728653 Msa1328740:intron 35.0%
! CCATCCAAAGCAATTTTTGA+CGG + chr8_4:46728681-46728700 None:intergenic 35.0%
! AATTGTTTGCTGCAGAATGT+AGG - chr8_4:46728716-46728735 Msa1328740:intron 35.0%
!!! GTAGGAGACTTTTAGTTTTC+TGG - chr8_4:46728734-46728753 Msa1328740:intron 35.0%
!!! GTTTTCTGGTTTTTAGTAGC+AGG - chr8_4:46728748-46728767 Msa1328740:intron 35.0%
!!! TTTCTGGTTTTTAGTAGCAG+GGG - chr8_4:46728750-46728769 Msa1328740:intron 35.0%
CTATATTGTAAACCACTGCA+CGG + chr8_4:46728820-46728839 None:intergenic 35.0%
TGTTCCTGAAAGTTGTAATG+TGG - chr8_4:46728887-46728906 Msa1328740:intron 35.0%
CAAACCACATTACAACTTTC+AGG + chr8_4:46728894-46728913 None:intergenic 35.0%
CTGAAAGTTGTAATGTGGTT+TGG - chr8_4:46728892-46728911 Msa1328740:intron 35.0%
GTATAGAGTAAACTAGCTCA+TGG + chr8_4:46728933-46728952 None:intergenic 35.0%
TGTCAATTCATGTAACTGCA+GGG - chr8_4:46729159-46729178 Msa1328740:five_prime_UTR 35.0%
AGGGACTTGTCCTTTAATAA+AGG - chr8_4:46729178-46729197 Msa1328740:five_prime_UTR 35.0%
TGGCAATATTCCAGATAGAT+TGG - chr8_4:46729373-46729392 Msa1328740:intron 35.0%
GGCAATATTCCAGATAGATT+GGG - chr8_4:46729374-46729393 Msa1328740:intron 35.0%
GCAATATTCCAGATAGATTG+GGG - chr8_4:46729375-46729394 Msa1328740:intron 35.0%
CAATATTCCAGATAGATTGG+GGG - chr8_4:46729376-46729395 Msa1328740:intron 35.0%
CAACCGTTCTACAATATAAC+AGG + chr8_4:46729521-46729540 None:intergenic 35.0%
TATTGTAGAACGGTTGAATC+GGG - chr8_4:46729525-46729544 Msa1328740:five_prime_UTR 35.0%
TGGAAAAATACCTCCTTCAT+TGG - chr8_4:46729719-46729738 Msa1328740:intron 35.0%
GGAAAAATACCTCCTTCATT+GGG - chr8_4:46729720-46729739 Msa1328740:intron 35.0%
ACTGTCCAAACTTTATTGGT+TGG - chr8_4:46729746-46729765 Msa1328740:intron 35.0%
CAAGTCCAACCAATAAAGTT+TGG + chr8_4:46729754-46729773 None:intergenic 35.0%
! CAAACTTTATTGGTTGGACT+TGG - chr8_4:46729752-46729771 Msa1328740:intron 35.0%
! ACAAGTGCTTAGCCTTTAAA+AGG + chr8_4:46729839-46729858 None:intergenic 35.0%
!! GACATCTGTGAGTACTTTTT+AGG - chr8_4:46729901-46729920 Msa1328740:five_prime_UTR 35.0%
!!! GCTGAAAAGTTTTGAAGGAA+TGG + chr8_4:46730063-46730082 None:intergenic 35.0%
! GTTAAAGTAAGCTGACTTAC+AGG + chr8_4:46730169-46730188 None:intergenic 35.0%
CTTCCTGACAGATTATTTGA+TGG - chr8_4:46730401-46730420 Msa1328740:intron 35.0%
TAAGGTTGCTGAGATTTGAA+GGG + chr8_4:46730625-46730644 None:intergenic 35.0%
! GAGAACTTAGATTTGAGACA+CGG - chr8_4:46730663-46730682 Msa1328740:intron 35.0%
ATTGATGTTAAGTCTGGCAA+AGG + chr8_4:46730778-46730797 None:intergenic 35.0%
TTTGCCAGACTTAACATCAA+TGG - chr8_4:46730777-46730796 Msa1328740:intron 35.0%
TGTAAGTAATTGGCATGAGT+TGG - chr8_4:46730815-46730834 Msa1328740:intron 35.0%
TATTCACGACAACATTTGAG+TGG - chr8_4:46730895-46730914 Msa1328740:intron 35.0%
AGTGGTTAGCACATTTCAAT+TGG - chr8_4:46730913-46730932 Msa1328740:intron 35.0%
CATGGTTAATGAAGCAATCA+TGG + chr8_4:46730998-46731017 None:intergenic 35.0%
GTTCAACTACCTCAAAATTG+AGG - chr8_4:46731049-46731068 Msa1328740:intron 35.0%
ATCCATCAAAAGCTCCAATT+TGG - chr8_4:46731343-46731362 Msa1328740:intron 35.0%
! AACCAAATTGGAGCTTTTGA+TGG + chr8_4:46731348-46731367 None:intergenic 35.0%
!!! CTGAATAGTTTTGATGGAAG+AGG + chr8_4:46731519-46731538 None:intergenic 35.0%
!! ACTTACACTTGCTGTATTTG+AGG + chr8_4:46731546-46731565 None:intergenic 35.0%
CAGATTTCATCAGTAACCTT+CGG - chr8_4:46731733-46731752 Msa1328740:intron 35.0%
CAATACTTAATGTGAACCGA+AGG + chr8_4:46731752-46731771 None:intergenic 35.0%
ATGTCTCACATCAATGTATC+TGG + chr8_4:46731800-46731819 None:intergenic 35.0%
CTTTCTAATCTCGCATACTT+AGG - chr8_4:46731826-46731845 Msa1328740:intron 35.0%
! GTTTGGCCTAACTTCTTTTA+TGG + chr8_4:46731887-46731906 None:intergenic 35.0%
TAGAACCTCTTTCATTTGCA+TGG - chr8_4:46732164-46732183 Msa1328740:intron 35.0%
AATTGCCATGCAAATGAAAG+AGG + chr8_4:46732172-46732191 None:intergenic 35.0%
TGCATGTATTTCAGTCTCAT+AGG - chr8_4:46732217-46732236 Msa1328740:intron 35.0%
! GGCAGTAATTTGTATTAGAG+AGG + chr8_4:46732264-46732283 None:intergenic 35.0%
GAACATTCCTTGATATGGAT+AGG + chr8_4:46732395-46732414 None:intergenic 35.0%
AAAGAGCTTATGGGAGAAAT+TGG - chr8_4:46732474-46732493 Msa1328740:intron 35.0%
AAGAGCTTATGGGAGAAATT+GGG - chr8_4:46732475-46732494 Msa1328740:intron 35.0%
AGGTCAGAAGTTCAAAGATT+TGG - chr8_4:46732601-46732620 Msa1328740:intron 35.0%
TAATAGGGTCCAAATTCATG+TGG + chr8_4:46732658-46732677 None:intergenic 35.0%
! GAAAAGCATAAGGAAATGCA+AGG + chr8_4:46732684-46732703 None:intergenic 35.0%
! ATCTTACCTGGAAAAGCATA+AGG + chr8_4:46732694-46732713 None:intergenic 35.0%
TTAGGCATACATCAATGTTG+TGG + chr8_4:46732797-46732816 None:intergenic 35.0%
TAATAACTGTGCACACAACA+AGG - chr8_4:46732855-46732874 Msa1328740:intron 35.0%
ACTATTATTGGGATAACAGC+TGG - chr8_4:46733033-46733052 Msa1328740:intron 35.0%
ACTTTGATTCTTTGCCTCAT+AGG - chr8_4:46733063-46733082 Msa1328740:intron 35.0%
CTTTGATTCTTTGCCTCATA+GGG - chr8_4:46733064-46733083 Msa1328740:intron 35.0%
AAGTGCACCAATAATTTCTC+TGG - chr8_4:46733315-46733334 Msa1328740:intron 35.0%
!! TCAGGAAGATGTTTTTGTCA+TGG - chr8_4:46733398-46733417 Msa1328740:intron 35.0%
TATCAATATCTTCCGGTTCA+TGG - chr8_4:46733422-46733441 Msa1328740:intron 35.0%
TCGAGAAAAGAATCGAGATT+CGG + chr8_4:46733557-46733576 None:intergenic 35.0%
!! AATTCTCTACTATTGGCTCT+TGG - chr8_4:46733888-46733907 Msa1328740:intron 35.0%
TTGCAACTATCTTTCCATCA+GGG + chr8_4:46733930-46733949 None:intergenic 35.0%
ATTGCAACTATCTTTCCATC+AGG + chr8_4:46733931-46733950 None:intergenic 35.0%
GTTCATCACAAGAATCTTGT+TGG - chr8_4:46734021-46734040 Msa1328740:intron 35.0%
TTATCCCTAATGGAACACTA+AGG - chr8_4:46734094-46734113 Msa1328740:intron 35.0%
TATCCCTAATGGAACACTAA+GGG - chr8_4:46734095-46734114 Msa1328740:intron 35.0%
! GGAAAAAGCATGTGGTTTAT+TGG - chr8_4:46734337-46734356 Msa1328740:intron 35.0%
! AGTGTTTCTTTCAAGAGTGT+CGG + chr8_4:46734397-46734416 None:intergenic 35.0%
ACACTCTTGAAAGAAACACT+TGG - chr8_4:46734397-46734416 Msa1328740:intron 35.0%
TGAATGTAGCATTACCAACA+AGG + chr8_4:46734434-46734453 None:intergenic 35.0%
! TCACACTAGAAGTCTTTTCA+CGG - chr8_4:46734510-46734529 Msa1328740:intron 35.0%
TGGTTGTTTATATGGTTGAC+CGG - chr8_4:46734611-46734630 Msa1328740:intron 35.0%
TTTGACATGAAATTGCGTTG+TGG - chr8_4:46734678-46734697 Msa1328740:intron 35.0%
TTGACATGAAATTGCGTTGT+GGG - chr8_4:46734679-46734698 Msa1328740:intron 35.0%
! CTGATTTTGCAGTTGTTAGT+TGG - chr8_4:46734707-46734726 Msa1328740:intron 35.0%
AGGGATCGTTAGAATTACAA+TGG - chr8_4:46734788-46734807 Msa1328740:intron 35.0%
ATGGAAAGGTTCAATTGACA+TGG - chr8_4:46734807-46734826 Msa1328740:intron 35.0%
ACTAGTCATATCTATCCAAG+AGG + chr8_4:46734836-46734855 None:intergenic 35.0%
AAGTTTAGACCATGTTGTTG+CGG + chr8_4:46734859-46734878 None:intergenic 35.0%
AGACCTTTATGATGAGGCTT+TGG + chr8_4:46725216-46725235 None:intergenic 40.0%
TTAGGTGCTCTGATACGTAA+CGG + chr8_4:46725342-46725361 None:intergenic 40.0%
TTTGAATGTTGCCCTTACGT+TGG + chr8_4:46725421-46725440 None:intergenic 40.0%
AATGCATGTGGTACCATTCT+AGG - chr8_4:46726129-46726148 Msa1328740:intron 40.0%
ATGCATGTGGTACCATTCTA+GGG - chr8_4:46726130-46726149 Msa1328740:intron 40.0%
TCATGTCAAACCAAAGCTAC+TGG - chr8_4:46726700-46726719 Msa1328740:CDS 40.0%
TCAAACCAAAGCTACTGGAA+AGG - chr8_4:46726705-46726724 Msa1328740:CDS 40.0%
TGATACCTTTCCAGTAGCTT+TGG + chr8_4:46726713-46726732 None:intergenic 40.0%
!! ATCGGTACAGAATTGGTCTT+AGG + chr8_4:46726955-46726974 None:intergenic 40.0%
!! GGTATTGATCGGTACAGAAT+TGG + chr8_4:46726962-46726981 None:intergenic 40.0%
ATGGTCAAATTACTGCACGT+AGG + chr8_4:46727042-46727061 None:intergenic 40.0%
!! TGTTAGCTTTCTAATGCCGT+TGG + chr8_4:46727098-46727117 None:intergenic 40.0%
! AAAACCTGTATTGATCGGTG+CGG + chr8_4:46727161-46727180 None:intergenic 40.0%
CCATGAGATTAGGTGAAACT+TGG + chr8_4:46727217-46727236 None:intergenic 40.0%
CCAAGTTTCACCTAATCTCA+TGG - chr8_4:46727214-46727233 Msa1328740:intron 40.0%
GAGGTTAGAACCATGAGATT+AGG + chr8_4:46727227-46727246 None:intergenic 40.0%
CAAGAAAGAAGAGAAGAGAG+AGG + chr8_4:46727491-46727510 None:intergenic 40.0%
! ATTAGTGTGAGTGGATTTGG+GGG + chr8_4:46727640-46727659 None:intergenic 40.0%
CAGTAACCTGCAACAAATCA+AGG - chr8_4:46727928-46727947 Msa1328740:intron 40.0%
!! AGTAACCCTTGATTTGTTGC+AGG + chr8_4:46727937-46727956 None:intergenic 40.0%
ATATAGGGGAATGTCAACCA+TGG - chr8_4:46728060-46728079 Msa1328740:intron 40.0%
TATAGGGGAATGTCAACCAT+GGG - chr8_4:46728061-46728080 Msa1328740:intron 40.0%
!! GCAACCATAATGCTAGTCTT+TGG + chr8_4:46728179-46728198 None:intergenic 40.0%
!! GCAACCATAATGCTAGTCTT+TGG + chr8_4:46728179-46728198 None:intergenic 40.0%
!!! AATGCACAGGATTTTTGGTC+AGG - chr8_4:46728562-46728581 Msa1328740:intron 40.0%
!!! ATGCACAGGATTTTTGGTCA+GGG - chr8_4:46728563-46728582 Msa1328740:intron 40.0%
! CAAAGCAATTTTTGACGGCA+TGG + chr8_4:46728676-46728695 None:intergenic 40.0%
CATGCCGTCAAAAATTGCTT+TGG - chr8_4:46728674-46728693 Msa1328740:intron 40.0%
! CCGTCAAAAATTGCTTTGGA+TGG - chr8_4:46728678-46728697 Msa1328740:intron 40.0%
!!! TTCTGGTTTTTAGTAGCAGG+GGG - chr8_4:46728751-46728770 Msa1328740:intron 40.0%
CAAAACAAATTGCACACGAG+TGG + chr8_4:46728848-46728867 None:intergenic 40.0%
!! CACTCGTGTGCAATTTGTTT+TGG - chr8_4:46728846-46728865 Msa1328740:intron 40.0%
! AGTTGTAATGTGGTTTGGAG+CGG - chr8_4:46728897-46728916 Msa1328740:intron 40.0%
GTGTCAATTCATGTAACTGC+AGG - chr8_4:46729158-46729177 Msa1328740:five_prime_UTR 40.0%
AACCAGCCAAAATCCTGAAA+CGG + chr8_4:46729343-46729362 None:intergenic 40.0%
GATCAAACCAATTGGCGAAT+TGG + chr8_4:46729499-46729518 None:intergenic 40.0%
! TTGGACAGTTTTCCCAATGA+AGG + chr8_4:46729735-46729754 None:intergenic 40.0%
TTGGCAGACAATCAACTTAC+TGG - chr8_4:46729771-46729790 Msa1328740:intron 40.0%
TTAAAAGGAGGTCTAAGCCA+GGG + chr8_4:46729824-46729843 None:intergenic 40.0%
TTTAAAAGGAGGTCTAAGCC+AGG + chr8_4:46729825-46729844 None:intergenic 40.0%
! TGGCTTAGACCTCCTTTTAA+AGG - chr8_4:46729824-46729843 Msa1328740:intron 40.0%
! AGTGCTTAGCCTTTAAAAGG+AGG + chr8_4:46729836-46729855 None:intergenic 40.0%
!! TGCGAGCTGAAAAGTTTTGA+AGG + chr8_4:46730068-46730087 None:intergenic 40.0%
! AAAACTTTTCAGCTCGCACA+TGG - chr8_4:46730070-46730089 Msa1328740:intron 40.0%
TATCCAAATAGGGCCATTTG+AGG - chr8_4:46730335-46730354 Msa1328740:intron 40.0%
AAACCTCAAATGGCCCTATT+TGG + chr8_4:46730341-46730360 None:intergenic 40.0%
!! AGGACTAGTTCAAACAGTTG+AGG - chr8_4:46730457-46730476 Msa1328740:intron 40.0%
CTCGACAGAAATTTCTTGAC+AGG - chr8_4:46730593-46730612 Msa1328740:five_prime_UTR 40.0%
CAGAAATTTCTTGACAGGAG+AGG - chr8_4:46730598-46730617 Msa1328740:five_prime_UTR 40.0%
CTAAGGTTGCTGAGATTTGA+AGG + chr8_4:46730626-46730645 None:intergenic 40.0%
! ACAATTCGGTGATGTTGCTA+AGG + chr8_4:46730643-46730662 None:intergenic 40.0%
!! ATACAGTGTCACTTCATTCC+AGG - chr8_4:46730725-46730744 Msa1328740:five_prime_UTR 40.0%
ACTGTTGTGTGCTAAATTCC+TGG + chr8_4:46730746-46730765 None:intergenic 40.0%
TTAGCACACAACAGTTTGTC+AGG - chr8_4:46730751-46730770 Msa1328740:five_prime_UTR 40.0%
GGTTAGCACATTTCAATTGG+TGG - chr8_4:46730916-46730935 Msa1328740:intron 40.0%
GGTTAATGAAGCAATCATGG+TGG + chr8_4:46730995-46731014 None:intergenic 40.0%
GTTAACCCCTTCCTAATTCA+TGG + chr8_4:46731016-46731035 None:intergenic 40.0%
!! TGGAGCTTTTGATGGATCAA+AGG + chr8_4:46731340-46731359 None:intergenic 40.0%
!!! GGACTGCTGAATAGTTTTGA+TGG + chr8_4:46731525-46731544 None:intergenic 40.0%
AAATCCACAAGCTTCAACTG+AGG + chr8_4:46731703-46731722 None:intergenic 40.0%
CGAAGGTTACTGATGAAATC+TGG + chr8_4:46731735-46731754 None:intergenic 40.0%
!! GTTTAGGTTGTTGCTGATGT+TGG + chr8_4:46732285-46732304 None:intergenic 40.0%
TTAGCCAAGCTAGTGGAATA+GGG + chr8_4:46732310-46732329 None:intergenic 40.0%
ATTAGCCAAGCTAGTGGAAT+AGG + chr8_4:46732311-46732330 None:intergenic 40.0%
TAGGCACATACACAACTTTC+TGG + chr8_4:46732376-46732395 None:intergenic 40.0%
GTATGTGCCTATCCATATCA+AGG - chr8_4:46732385-46732404 Msa1328740:intron 40.0%
CAAGGAATGTTCTACTTCAG+AGG - chr8_4:46732403-46732422 Msa1328740:intron 40.0%
TACAAGCCTCCACATGAATT+TGG - chr8_4:46732646-46732665 Msa1328740:intron 40.0%
GGAAATGCAAGGGAGTAATA+GGG + chr8_4:46732673-46732692 None:intergenic 40.0%
AGGAAATGCAAGGGAGTAAT+AGG + chr8_4:46732674-46732693 None:intergenic 40.0%
! GCATTTCCTTATGCTTTTCC+AGG - chr8_4:46732685-46732704 Msa1328740:intron 40.0%
AATTGCAACATCTATGCAGC+TGG - chr8_4:46732928-46732947 Msa1328740:intron 40.0%
AAAGGAGCTTCTCTTAGCAT+AGG - chr8_4:46733009-46733028 Msa1328740:intron 40.0%
CATATACAGCTAACCCTATG+AGG + chr8_4:46733080-46733099 None:intergenic 40.0%
!! ATCTATTTTTCCCAGCATCC+TGG - chr8_4:46733218-46733237 Msa1328740:intron 40.0%
!! TCTATTTTTCCCAGCATCCT+GGG - chr8_4:46733219-46733238 Msa1328740:intron 40.0%
! TTTCTCTGGAAGCAATGAAC+TGG - chr8_4:46733329-46733348 Msa1328740:intron 40.0%
! TTCTCTGGAAGCAATGAACT+GGG - chr8_4:46733330-46733349 Msa1328740:intron 40.0%
! CACTTGATATTCGTATCGAC+TGG + chr8_4:46733487-46733506 None:intergenic 40.0%
!! TATTGGCTCTTGGTGTACAA+AGG - chr8_4:46733898-46733917 Msa1328740:intron 40.0%
! ATTGGCTCTTGGTGTACAAA+GGG - chr8_4:46733899-46733918 Msa1328740:intron 40.0%
AGTTGCAATCAAAAGAGCTC+AGG - chr8_4:46733942-46733961 Msa1328740:intron 40.0%
!! AAGAATCTTGTTGGCCTTGT+GGG - chr8_4:46734030-46734049 Msa1328740:intron 40.0%
TCTCCCTTAGTGTTCCATTA+GGG + chr8_4:46734101-46734120 None:intergenic 40.0%
GTCAGGTAAGTTCATAGTGA+AGG - chr8_4:46734125-46734144 Msa1328740:intron 40.0%
CAAGAGAATGCCCAAAATCA+AGG + chr8_4:46734254-46734273 None:intergenic 40.0%
! CTTGATTTTGGGCATTCTCT+TGG - chr8_4:46734252-46734271 Msa1328740:intron 40.0%
!! CTATCGCAGGTTTTGATACA+TGG + chr8_4:46734296-46734315 None:intergenic 40.0%
! CTCTGTAAGGAAAAAGCATG+TGG - chr8_4:46734329-46734348 Msa1328740:intron 40.0%
ATGTGGTTTATTGGCAGACT+CGG - chr8_4:46734346-46734365 Msa1328740:intron 40.0%
!! TTTCTTTCAAGAGTGTCGGA+TGG + chr8_4:46734393-46734412 None:intergenic 40.0%
! CACACTAGAAGTCTTTTCAC+GGG - chr8_4:46734511-46734530 Msa1328740:intron 40.0%
!! GGTATATACTGTAGCTCTGA+AGG - chr8_4:46734553-46734572 Msa1328740:intron 40.0%
GTTAATTCCATCCTCATGGA+TGG + chr8_4:46734590-46734609 None:intergenic 40.0%
CCAAGTTAATTCCATCCTCA+TGG + chr8_4:46734594-46734613 None:intergenic 40.0%
CCATGAGGATGGAATTAACT+TGG - chr8_4:46734591-46734610 Msa1328740:intron 40.0%
GCACCAAAGCCTCATCATAA+AGG - chr8_4:46725210-46725229 Msa1328740:intron 45.0%
TAGGTGCTCTGATACGTAAC+GGG + chr8_4:46725341-46725360 None:intergenic 45.0%
CTCACAACAATAGCTAGTCC+TGG - chr8_4:46725381-46725400 Msa1328740:intron 45.0%
CGTAAGGGCAACATTCAAAC+AGG - chr8_4:46725422-46725441 Msa1328740:intron 45.0%
AAGGGCAACATTCAAACAGG+AGG - chr8_4:46725425-46725444 Msa1328740:intron 45.0%
AGGGCAACATTCAAACAGGA+GGG - chr8_4:46725426-46725445 Msa1328740:intron 45.0%
TGAGAGCTTATGCCCTAGAA+TGG + chr8_4:46726145-46726164 None:intergenic 45.0%
TTATGCTCAACCAGAGACGA+GGG + chr8_4:46726266-46726285 None:intergenic 45.0%
! TGTCAGCTTTCTAGTGGCTT+TGG + chr8_4:46726905-46726924 None:intergenic 45.0%
!! TCGTTTTGACGTGAGACCAA+CGG - chr8_4:46727079-46727098 Msa1328740:intron 45.0%
! TGTATTGATCGGTGCGGAAT+TGG + chr8_4:46727155-46727174 None:intergenic 45.0%
! AATTCCGCACCGATCAATAC+AGG - chr8_4:46727154-46727173 Msa1328740:intron 45.0%
CTCCACTTAATTCACCCTTC+AGG + chr8_4:46728087-46728106 None:intergenic 45.0%
TCTCTGACATCGTCATAGCA+TGG - chr8_4:46728463-46728482 Msa1328740:five_prime_UTR 45.0%
! CTGCTACTGCAGAATTTTGC+AGG + chr8_4:46728611-46728630 None:intergenic 45.0%
TATCTGCTGTTAGGCGACTT+TGG - chr8_4:46728643-46728662 Msa1328740:intron 45.0%
ATCTGCTGTTAGGCGACTTT+GGG - chr8_4:46728644-46728663 Msa1328740:intron 45.0%
! AGCAATTTTTGACGGCATGG+AGG + chr8_4:46728673-46728692 None:intergenic 45.0%
!!! TCTGGTTTTTAGTAGCAGGG+GGG - chr8_4:46728752-46728771 Msa1328740:intron 45.0%
GGTTCTATCTCTCCAGAACT+GGG - chr8_4:46729208-46729227 Msa1328740:intron 45.0%
TTGCTTAAGTCTCCCAGTTC+TGG + chr8_4:46729223-46729242 None:intergenic 45.0%
!! AACCGTTTCAGGATTTTGGC+TGG - chr8_4:46729338-46729357 Msa1328740:five_prime_UTR 45.0%
GAAAGATCCCCCAATCTATC+TGG + chr8_4:46729386-46729405 None:intergenic 45.0%
AAGTTGGCCAATTCGCCAAT+TGG - chr8_4:46729489-46729508 Msa1328740:five_prime_UTR 45.0%
! CATGGTTCAATCGGTTCAAC+CGG + chr8_4:46729557-46729576 None:intergenic 45.0%
GAACCGATTGAACCATGATC+CGG - chr8_4:46729560-46729579 Msa1328740:intron 45.0%
AAGCCGGATCATGGTTCAAT+CGG + chr8_4:46729566-46729585 None:intergenic 45.0%
AAACAGTGAAAGCCGGATCA+TGG + chr8_4:46729575-46729594 None:intergenic 45.0%
GGAGATCAAACAGTGAAAGC+CGG + chr8_4:46729582-46729601 None:intergenic 45.0%
! GACAGTTTTCCCAATGAAGG+AGG + chr8_4:46729732-46729751 None:intergenic 45.0%
TAAAAGGAGGTCTAAGCCAG+GGG + chr8_4:46729823-46729842 None:intergenic 45.0%
! ATGGAGTTTGGAGCACTTGA+AGG - chr8_4:46731492-46731511 Msa1328740:intron 45.0%
TTGTCCTCAGTTGAAGCTTG+TGG - chr8_4:46731696-46731715 Msa1328740:intron 45.0%
CTAGTGGAATAGGGCTGTTT+AGG + chr8_4:46732301-46732320 None:intergenic 45.0%
! TCCACTAGCTTGGCTAATTG+TGG - chr8_4:46732313-46732332 Msa1328740:intron 45.0%
TCCACAATTAGCCAAGCTAG+TGG + chr8_4:46732317-46732336 None:intergenic 45.0%
! ACTAGCTTGGCTAATTGTGG+AGG - chr8_4:46732316-46732335 Msa1328740:intron 45.0%
! GGACTGAGCTTTTGATCAGA+GGG + chr8_4:46732355-46732374 None:intergenic 45.0%
! TGGACTGAGCTTTTGATCAG+AGG + chr8_4:46732356-46732375 None:intergenic 45.0%
TAGGGTCCAAATTCATGTGG+AGG + chr8_4:46732655-46732674 None:intergenic 45.0%
GCTAAGAGAAGCTCCTTTGT+GGG + chr8_4:46733007-46733026 None:intergenic 45.0%
TGCTAAGAGAAGCTCCTTTG+TGG + chr8_4:46733008-46733027 None:intergenic 45.0%
CATCTTGCTCCCTTCAATTG+TGG + chr8_4:46733274-46733293 None:intergenic 45.0%
CACAATTGAAGGGAGCAAGA+TGG - chr8_4:46733272-46733291 Msa1328740:intron 45.0%
TCTTCCGGTTCATGGATACA+TGG - chr8_4:46733430-46733449 Msa1328740:intron 45.0%
GTCTCCATGTATCCATGAAC+CGG + chr8_4:46733437-46733456 None:intergenic 45.0%
! TTGGCTCTTGGTGTACAAAG+GGG - chr8_4:46733900-46733919 Msa1328740:intron 45.0%
GCAATCAAAAGAGCTCAGGA+AGG - chr8_4:46733946-46733965 Msa1328740:intron 45.0%
!! CAAGAATCTTGTTGGCCTTG+TGG - chr8_4:46734029-46734048 Msa1328740:intron 45.0%
GTTCAAAGCAGAATCCCACA+AGG + chr8_4:46734047-46734066 None:intergenic 45.0%
! GTGGGATTCTGCTTTGAACA+AGG - chr8_4:46734048-46734067 Msa1328740:intron 45.0%
CTCTCCCTTAGTGTTCCATT+AGG + chr8_4:46734102-46734121 None:intergenic 45.0%
ACACTAAGGGAGAGTTTGTC+AGG - chr8_4:46734108-46734127 Msa1328740:intron 45.0%
TGTGGTTTATTGGCAGACTC+GGG - chr8_4:46734347-46734366 Msa1328740:intron 45.0%
!! TGGACAGCTCTAAACCTTGT+TGG - chr8_4:46734417-46734436 Msa1328740:intron 45.0%
! ACTAGAAGTCTTTTCACGGG+AGG - chr8_4:46734514-46734533 Msa1328740:intron 45.0%
GGAGGTTGTGGATAGTAACT+TGG - chr8_4:46734532-46734551 Msa1328740:intron 45.0%
TTCTAAACCTGCCATCCATG+AGG - chr8_4:46734576-46734595 Msa1328740:intron 45.0%
CAATTGACATGGATGCCTCT+TGG - chr8_4:46734818-46734837 Msa1328740:intron 45.0%
! ATGACTAGTCCGCAACAACA+TGG - chr8_4:46734847-46734866 Msa1328740:intron 45.0%
!! AAAATAATTAAATAAAAAAG+AGG - chr8_4:46727899-46727918 Msa1328740:intron 5.0%
!! AAATAATTAAATAAAAAAGA+GGG - chr8_4:46727900-46727919 Msa1328740:intron 5.0%
!!! ATTTATCATTTTTATAAATT+TGG + chr8_4:46728406-46728425 None:intergenic 5.0%
!!! TATATTTTTTTATTGAAAAA+TGG + chr8_4:46732066-46732085 None:intergenic 5.0%
GTTACAGTTGCTCCTTCCCA+AGG + chr8_4:46725001-46725020 None:intergenic 50.0%
! CTCTGATACGTAACGGGATG+GGG + chr8_4:46725335-46725354 None:intergenic 50.0%
! GCTCTGATACGTAACGGGAT+GGG + chr8_4:46725336-46725355 None:intergenic 50.0%
! TGCTCTGATACGTAACGGGA+TGG + chr8_4:46725337-46725356 None:intergenic 50.0%
! TCAGAGCACCTAAGACGACA+CGG - chr8_4:46725349-46725368 Msa1328740:intron 50.0%
!! TTGGTAACGTGCAGGTAACC+AGG + chr8_4:46725402-46725421 None:intergenic 50.0%
ACCTGCACGTTACCAACGTA+AGG - chr8_4:46725406-46725425 Msa1328740:intron 50.0%
CCTGCACGTTACCAACGTAA+GGG - chr8_4:46725407-46725426 Msa1328740:intron 50.0%
GGGCAACATTCAAACAGGAG+GGG - chr8_4:46725427-46725446 Msa1328740:intron 50.0%
GCATAAGCTCTCATCGTCGT+GGG - chr8_4:46726152-46726171 Msa1328740:intron 50.0%
GAGCAAAAGCTTCATCGTCG+TGG - chr8_4:46726176-46726195 Msa1328740:intron 50.0%
GTGGTTGAGCAAAAGCTCCA+GGG - chr8_4:46726195-46726214 Msa1328740:intron 50.0%
CTTATGCTCAACCAGAGACG+AGG + chr8_4:46726267-46726286 None:intergenic 50.0%
! CTTTTGCTCAACCACGACGA+TGG + chr8_4:46726190-46726209 None:intergenic 50.0%
! CTTTTGCTCAACCACGACGA+TGG + chr8_4:46726190-46726209 None:intergenic 50.0%
GTGGTTGAGCAAAAGCTCCA+GGG - chr8_4:46726195-46726214 Msa1328740:intron 50.0%
!! ATCGGTGCGGAATTGGTCTT+AGG + chr8_4:46727148-46727167 None:intergenic 50.0%
!! AAGAACGCTGCTGCTGATTC+AGG + chr8_4:46727464-46727483 None:intergenic 50.0%
AATGTCAACCATGGGCCTGA+AGG - chr8_4:46728069-46728088 Msa1328740:intron 50.0%
ATGTCAACCATGGGCCTGAA+GGG - chr8_4:46728070-46728089 Msa1328740:intron 50.0%
TAATTCACCCTTCAGGCCCA+TGG + chr8_4:46728080-46728099 None:intergenic 50.0%
GGCCTGAAGGGTGAATTAAG+TGG - chr8_4:46728082-46728101 Msa1328740:intron 50.0%
TGGCTACCGAACAAATGCAC+AGG - chr8_4:46728549-46728568 Msa1328740:intron 50.0%
!!! CTGGTTTTTAGTAGCAGGGG+GGG - chr8_4:46728753-46728772 Msa1328740:intron 50.0%
GGGTTCTATCTCTCCAGAAC+TGG - chr8_4:46729207-46729226 Msa1328740:intron 50.0%
CGGTTGAATCGGGATTGAAC+CGG - chr8_4:46729535-46729554 Msa1328740:five_prime_UTR 50.0%
!! GGGTAGTGGAGGTTGAAACT+GGG + chr8_4:46729803-46729822 None:intergenic 50.0%
ACAGCCCTATTCCACTAGCT+TGG - chr8_4:46732303-46732322 Msa1328740:intron 50.0%
CTAGCACTCTTTCCACCAAC+AGG - chr8_4:46732565-46732584 Msa1328740:intron 50.0%
! AATCCTGCAAAAGAAGCGCG+CGG - chr8_4:46733101-46733120 Msa1328740:intron 50.0%
! TGGAGGTGCACCACAATTGA+AGG - chr8_4:46733261-46733280 Msa1328740:intron 50.0%
! GGAGGTGCACCACAATTGAA+GGG - chr8_4:46733262-46733281 Msa1328740:intron 50.0%
GGAAGCAATGAACTGGGCTT+TGG - chr8_4:46733336-46733355 Msa1328740:intron 50.0%
! AGCAATGAACTGGGCTTTGG+TGG - chr8_4:46733339-46733358 Msa1328740:intron 50.0%
!! TACAAAGGGGTGTTCCCTGA+TGG - chr8_4:46733913-46733932 Msa1328740:intron 50.0%
GCTCAGGAAGGATCAATGCA+AGG - chr8_4:46733958-46733977 Msa1328740:intron 50.0%
CAGGAAGGATCAATGCAAGG+AGG - chr8_4:46733961-46733980 Msa1328740:intron 50.0%
GTGGTTTATTGGCAGACTCG+GGG - chr8_4:46734348-46734367 Msa1328740:intron 50.0%
TGGTTTATTGGCAGACTCGG+GGG - chr8_4:46734349-46734368 Msa1328740:intron 50.0%
! AGTCTTTTCACGGGAGGTTG+TGG - chr8_4:46734520-46734539 Msa1328740:intron 50.0%
AAACCTGCCATCCATGAGGA+TGG - chr8_4:46734580-46734599 Msa1328740:intron 50.0%
ATTCCATCCTCATGGATGGC+AGG + chr8_4:46734586-46734605 None:intergenic 50.0%
CGAGTAAGCAAAATTGCGGC+CGG + chr8_4:46734633-46734652 None:intergenic 50.0%
! AAGACCCTTGTGGAGCACCT+TGG - chr8_4:46724981-46725000 Msa1328740:intron 55.0%
! AGACCCTTGTGGAGCACCTT+GGG - chr8_4:46724982-46725001 Msa1328740:intron 55.0%
! CTTCCCAAGGTGCTCCACAA+GGG + chr8_4:46724988-46725007 None:intergenic 55.0%
AATCTCCGCCGTGTCGTCTT+AGG + chr8_4:46725360-46725379 None:intergenic 55.0%
!! CCCTTACGTTGGTAACGTGC+AGG + chr8_4:46725410-46725429 None:intergenic 55.0%
GGCATAAGCTCTCATCGTCG+TGG - chr8_4:46726151-46726170 Msa1328740:intron 55.0%
CGTGGTTGAGCAAAAGCTCC+AGG - chr8_4:46726194-46726213 Msa1328740:intron 55.0%
GAGCATAAGCTCCATCGTCG+TGG - chr8_4:46726278-46726297 Msa1328740:intron 55.0%
GAGCAAAAGCTCCATCGTCG+TGG - chr8_4:46726303-46726322 Msa1328740:intron 55.0%
CGTGGTTGAGCAAAAGCTCC+AGG - chr8_4:46726194-46726213 Msa1328740:intron 55.0%
AAAGATGAGGGCTCATGCCC+TGG + chr8_4:46726342-46726361 None:intergenic 55.0%
! TTGGCTGGTTGCAGCTTCAG+TGG - chr8_4:46729353-46729372 Msa1328740:five_prime_UTR 55.0%
GTGGAGGTTGAAACTGGGAG+AGG + chr8_4:46729798-46729817 None:intergenic 55.0%
!! GGGGTAGTGGAGGTTGAAAC+TGG + chr8_4:46729804-46729823 None:intergenic 55.0%
GTTTCAACCTCCACTACCCC+TGG - chr8_4:46729804-46729823 Msa1328740:intron 55.0%
GAGAGGGTAGCAATGCACAC+TGG + chr8_4:46732247-46732266 None:intergenic 55.0%
GCACCAAGTGGCAAGGATAG+TGG - chr8_4:46733241-46733260 Msa1328740:intron 55.0%
CCTCCACTATCCTTGCCACT+TGG + chr8_4:46733247-46733266 None:intergenic 55.0%
! CCAAGTGGCAAGGATAGTGG+AGG - chr8_4:46733244-46733263 Msa1328740:intron 55.0%
! GAACTGGGCTTTGGTGGCTA+TGG - chr8_4:46733345-46733364 Msa1328740:intron 55.0%
! CCTTCCCAAGGTGCTCCACA+AGG + chr8_4:46724989-46725008 None:intergenic 60.0%
! CCTTGTGGAGCACCTTGGGA+AGG - chr8_4:46724986-46725005 Msa1328740:intron 60.0%
GAGCACCTAAGACGACACGG+CGG - chr8_4:46725352-46725371 Msa1328740:intron 60.0%
ATGTTGGGGGCTTGATGCCC+TGG + chr8_4:46726215-46726234 None:intergenic 60.0%
! GTCTAAGCCAGGGGTAGTGG+AGG + chr8_4:46729814-46729833 None:intergenic 60.0%
GAGGTCTAAGCCAGGGGTAG+TGG + chr8_4:46729817-46729836 None:intergenic 60.0%
! TCTCCGCGCGCTTCTTTTGC+AGG + chr8_4:46733107-46733126 None:intergenic 60.0%
AAGCGCGCGGAGAAAGCCAT+TGG - chr8_4:46733114-46733133 Msa1328740:intron 60.0%
!! CACTTGGTGCCCAGGATGCT+GGG + chr8_4:46733231-46733250 None:intergenic 60.0%
ATCCTGGGCACCAAGTGGCA+AGG - chr8_4:46733234-46733253 Msa1328740:intron 60.0%
!! ATCCTTGCCACTTGGTGCCC+AGG + chr8_4:46733239-46733258 None:intergenic 60.0%
! GGGCTTTGGTGGCTATGGCA+AGG - chr8_4:46733350-46733369 Msa1328740:intron 60.0%
TATTGGCAGACTCGGGGGCT+TGG - chr8_4:46734354-46734373 Msa1328740:intron 60.0%
GAGACGAGGGCTCATGCCCT+AGG + chr8_4:46726253-46726272 None:intergenic 65.0%
AGGGCATGAGCCCTCGTCTC+TGG - chr8_4:46726253-46726272 Msa1328740:intron 65.0%
AGTAGCAGGGGGGGATGCAC+TGG - chr8_4:46728762-46728781 Msa1328740:intron 65.0%
ATAGAGGGGGAGCCGTGCAG+TGG - chr8_4:46728805-46728824 Msa1328740:intron 65.0%
!! CCACTTGGTGCCCAGGATGC+TGG + chr8_4:46733232-46733251 None:intergenic 65.0%
CCAGCATCCTGGGCACCAAG+TGG - chr8_4:46733229-46733248 Msa1328740:intron 65.0%
GCAGACTCGGGGGCTTGGAA+TGG - chr8_4:46734359-46734378 Msa1328740:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 46724972 46735000 46724972 ID=Msa1328740;Name=Msa1328740
chr8_4 mRNA 46724972 46735000 46724972 ID=Msa1328740-mRNA-1;Parent=Msa1328740;Name=Msa1328740-mRNA-1;_AED=0.33;_eAED=0.35;_QI=1199|0.87|0.82|0.94|0.68|0.70|17|0|203
chr8_4 exon 46724972 46724993 46724972 ID=Msa1328740-mRNA-1:exon:13409;Parent=Msa1328740-mRNA-1
chr8_4 exon 46726601 46726739 46726601 ID=Msa1328740-mRNA-1:exon:13408;Parent=Msa1328740-mRNA-1
chr8_4 exon 46726819 46726971 46726819 ID=Msa1328740-mRNA-1:exon:13407;Parent=Msa1328740-mRNA-1
chr8_4 exon 46727266 46727741 46727266 ID=Msa1328740-mRNA-1:exon:13406;Parent=Msa1328740-mRNA-1
chr8_4 exon 46728193 46728327 46728193 ID=Msa1328740-mRNA-1:exon:13405;Parent=Msa1328740-mRNA-1
chr8_4 exon 46728413 46728484 46728413 ID=Msa1328740-mRNA-1:exon:13404;Parent=Msa1328740-mRNA-1
chr8_4 exon 46728578 46728652 46728578 ID=Msa1328740-mRNA-1:exon:13403;Parent=Msa1328740-mRNA-1
chr8_4 exon 46729157 46729225 46729157 ID=Msa1328740-mRNA-1:exon:13402;Parent=Msa1328740-mRNA-1
chr8_4 exon 46729312 46729383 46729312 ID=Msa1328740-mRNA-1:exon:13401;Parent=Msa1328740-mRNA-1
chr8_4 exon 46729489 46729560 46729489 ID=Msa1328740-mRNA-1:exon:13400;Parent=Msa1328740-mRNA-1
chr8_4 exon 46729867 46729941 46729867 ID=Msa1328740-mRNA-1:exon:13399;Parent=Msa1328740-mRNA-1
chr8_4 exon 46730116 46730277 46730116 ID=Msa1328740-mRNA-1:exon:13398;Parent=Msa1328740-mRNA-1
chr8_4 exon 46730552 46730623 46730552 ID=Msa1328740-mRNA-1:exon:13397;Parent=Msa1328740-mRNA-1
chr8_4 exon 46730718 46730792 46730718 ID=Msa1328740-mRNA-1:exon:13396;Parent=Msa1328740-mRNA-1
chr8_4 exon 46731835 46731906 46731835 ID=Msa1328740-mRNA-1:exon:13395;Parent=Msa1328740-mRNA-1
chr8_4 exon 46732011 46732041 46732011 ID=Msa1328740-mRNA-1:exon:13394;Parent=Msa1328740-mRNA-1
chr8_4 exon 46734962 46735000 46734962 ID=Msa1328740-mRNA-1:exon:13393;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46734962 46735000 46734962 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46732011 46732041 46732011 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46731835 46731906 46731835 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46730718 46730792 46730718 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46730552 46730623 46730552 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46730116 46730277 46730116 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46729867 46729941 46729867 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46729489 46729560 46729489 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46729312 46729383 46729312 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46729157 46729225 46729157 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46728578 46728652 46728578 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46728413 46728484 46728413 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46728193 46728327 46728193 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 five_prime_UTR 46727564 46727741 46727564 ID=Msa1328740-mRNA-1:five_prime_utr;Parent=Msa1328740-mRNA-1
chr8_4 CDS 46727266 46727563 46727266 ID=Msa1328740-mRNA-1:cds;Parent=Msa1328740-mRNA-1
chr8_4 CDS 46726819 46726971 46726819 ID=Msa1328740-mRNA-1:cds;Parent=Msa1328740-mRNA-1
chr8_4 CDS 46726601 46726739 46726601 ID=Msa1328740-mRNA-1:cds;Parent=Msa1328740-mRNA-1
chr8_4 CDS 46724972 46724993 46724972 ID=Msa1328740-mRNA-1:cds;Parent=Msa1328740-mRNA-1
Gene Sequence

>Msa1328740

ATGTTCTACTTCAGAGGACCTTTGTTCAGAGAATTGTCTAATATAACTATTTTCCATTCACTTGAAAAGAGCTTATGGGAGAAATTGGGTTTAACACCTGCTTCAGTTTCTTTACAAAACCCTTTTTTCAATGGTGATGATTATCTACAAATGCAACTAGCACTCTTTCCACCAACAGGACAATATTTTAATAGGTCAGAAGTTCAAAGATTTGGATTTTCATTGAGTAATCAAACTTACAAGCCTCCACATGAATTTGGACCCTATTACTCCCTTGCATTTCCTTATGCTTTTCCAGATTCCCACAAAGGAGCTTCTCTTAGCATAGGTACTATTATTGGGATAACAGCTGGAAGCACAACTTTGATTCTTTGCCTCATAGGGTTAGCTGTATATGCAATCCTGCAAAAGAAGCGCGCGGAGAAAGCCATTGGAATAAGTAGACCATTTGCATCCTGGGCACCAAGTGGCAAGGATAGTGGAGGTGCACCACAATTGAAGGGAGCAAGATGGTTCTCTTATGATGAACTCAAAAGTGCACCAATAATTTCTCTGGAAGCAATGAACTGGGCTTTGGTGGCTATGGCAAGTCATTATCATGATGAATGCTAA

Protein sequence

>Msa1328740

MFYFRGPLFRELSNITIFHSLEKSLWEKLGLTPASVSLQNPFFNGDDYLQMQLALFPPTGQYFNRSEVQRFGFSLSNQTYKPPHEFGPYYSLAFPYAFPDSHKGASLSIGTIIGITAGSTTLILCLIGLAVYAILQKKRAEKAIGISRPFASWAPSGKDSGGAPQLKGARWFSYDELKSAPIISLEAMNWALVAMASHYHDEC*