AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene70326


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70326.t1 MTR_2g066060 35.088 171 99 2 128 289 218 385 1.41e-21 94.0
MS.gene70326.t1 MTR_7g114070 28.931 159 100 3 144 291 178 334 2.46e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene70326.t1 AT2G21960 83.039 283 48 0 10 292 50 332 1.58e-173 483
MS.gene70326.t1 AT1G56180 32.143 168 105 1 133 291 217 384 2.95e-20 90.1
MS.gene70326.t1 AT5G27290 31.447 159 96 4 144 291 179 335 3.48e-14 72.4

Find 65 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 4.1:+9549950 MS.gene70326:CDS
CTTCGAGAGCTGACAACTTT+AGG 0.199826 4.1:+9548485 MS.gene70326:CDS
GTCGATCCATGAAGCCTTAA+TGG 0.219380 4.1:+9550760 MS.gene70326:CDS
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 4.1:+9548722 MS.gene70326:CDS
ATCCAGTGAATATCCCAAAA+TGG 0.251435 4.1:-9549964 None:intergenic
TTCGAGAGCTGACAACTTTA+GGG 0.257197 4.1:+9548486 MS.gene70326:CDS
AACTGGATTCTTGGGTATTC+TGG 0.263208 4.1:+9548706 MS.gene70326:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 4.1:+9547936 MS.gene70326:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 4.1:+9548723 MS.gene70326:CDS
TTGGGATATTCACTGGATAT+TGG 0.298796 4.1:+9549969 MS.gene70326:CDS
TTCTTTGTACCATACTTGAT+TGG 0.309773 4.1:+9549579 MS.gene70326:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 4.1:+9549603 MS.gene70326:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 4.1:-9547964 None:intergenic
TTTACTGTGGTTGGAACAAC+TGG 0.327694 4.1:+9548689 MS.gene70326:CDS
ATCTTTGCTGAGTTGTGGTT+TGG 0.340177 4.1:-9550548 None:intergenic
GGTTGGAACAACTGGATTCT+TGG 0.341417 4.1:+9548697 MS.gene70326:CDS
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 4.1:+9549936 MS.gene70326:intron
CTTTGCCATCGATGCCATTA+AGG 0.360946 4.1:-9550774 None:intergenic
GCAATCCTTTCCTGATAATC+AGG 0.364930 4.1:-9549772 None:intergenic
AGCAACAAAATCTCACTAGA+TGG 0.367508 4.1:+9550572 MS.gene70326:CDS
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 4.1:+9549602 MS.gene70326:CDS
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 4.1:+9549609 MS.gene70326:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 4.1:-9549588 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 4.1:+9549596 MS.gene70326:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 4.1:+9549580 MS.gene70326:CDS
TGTAATTGTTCCAACCTCAT+TGG 0.410517 4.1:-9547430 None:intergenic
CAGATTGGCTGTTGTATCAA+TGG 0.423423 4.1:+9550337 MS.gene70326:intron
TCGATGCCATTAAGGCTTCA+TGG 0.429892 4.1:-9550766 None:intergenic
TGTTGTATCAATGGCTGGAC+TGG 0.438705 4.1:+9550346 MS.gene70326:CDS
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 4.1:+9547952 MS.gene70326:CDS
TCCAGTGAATATCCCAAAAT+GGG 0.449171 4.1:-9549963 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 4.1:+9547605 MS.gene70326:CDS
TTAACATATGACAAGGTTGT+TGG 0.456845 4.1:+9550380 MS.gene70326:CDS
ATGTCAATCTCATTGATGAT+AGG 0.463698 4.1:+9550000 MS.gene70326:CDS
TGCTGATCTTTGCTGAGTTG+TGG 0.475443 4.1:-9550553 None:intergenic
GTTGGAACAACTGGATTCTT+GGG 0.483037 4.1:+9548698 MS.gene70326:CDS
CTTGAAAAGCTTCTCTATAG+TGG 0.485483 4.1:+9550023 MS.gene70326:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 4.1:+9548710 MS.gene70326:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 4.1:-9548733 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 4.1:+9547911 MS.gene70326:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 4.1:+9549624 MS.gene70326:CDS
TTGATGCTAAGGAGATAGAT+AGG 0.494421 4.1:+9550051 MS.gene70326:CDS
AATGGCATCGATGGCAAAGA+AGG 0.499709 4.1:+9550778 MS.gene70326:CDS
GTCGACACCAGGTGCAGCAG+AGG 0.506013 4.1:-9547612 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 4.1:-9547984 None:intergenic
TTGGCTGTTGTATCAATGGC+TGG 0.512860 4.1:+9550341 MS.gene70326:CDS
TGTTGACTGATGCAGGATTG+GGG 0.521890 4.1:+9549555 MS.gene70326:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 4.1:+9547983 MS.gene70326:CDS
TAGTGGTCAGCTTGATGCTA+AGG 0.529877 4.1:+9550040 MS.gene70326:CDS
ATCAACTGAGTGAAATTGGT+TGG 0.534376 4.1:+9547940 MS.gene70326:CDS
GCCTATACCCAATACCACTA+AGG 0.541332 4.1:-9549610 None:intergenic
TGAAGCCTTAATGGCATCGA+TGG 0.543498 4.1:+9550769 MS.gene70326:CDS
TCAACTGAGTGAAATTGGTT+GGG 0.547534 4.1:+9547941 MS.gene70326:CDS
AAAAGCTGCTAATAGCTGCT+TGG 0.552163 4.1:-9549738 None:intergenic
TTCTGACACTAGGAATTGCA+AGG 0.566777 4.1:-9548526 None:intergenic
GCAACAAAATCTCACTAGAT+GGG 0.575785 4.1:+9550573 MS.gene70326:CDS
TCTTGATTCTGCCATTGCCA+AGG 0.579069 4.1:+9547643 MS.gene70326:CDS
ATGGTCAATTACCTTGGCAA+TGG 0.596299 4.1:-9547654 None:intergenic
CTCACATCATTTCTGACACT+AGG 0.596674 4.1:-9548536 None:intergenic
ATGGCTGGACTGGCAGCAGA+AGG 0.600695 4.1:+9550356 MS.gene70326:CDS
AGAGTGTTGAGGTCGACACC+AGG 0.613261 4.1:-9547623 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 4.1:+9548724 MS.gene70326:CDS
GTATAGGCAGCACATCTCCT+GGG 0.621976 4.1:+9549625 MS.gene70326:CDS
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 4.1:-9547634 None:intergenic
AGAAGGTTTAACATATGACA+AGG 0.674545 4.1:+9550373 MS.gene70326:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG - chr4.1:9547524-9547543 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG - chr4.1:9547530-9547549 None:intergenic 10.0%
!! ACTTCAAATAAAAAATGTAA+TGG - chr4.1:9547676-9547695 None:intergenic 15.0%
!! GCATATGAATATTTAAATAT+GGG - chr4.1:9548417-9548436 None:intergenic 15.0%
!! GTAAAAATTATAATATGGTT+TGG - chr4.1:9547525-9547544 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG - chr4.1:9548418-9548437 None:intergenic 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG + chr4.1:9548303-9548322 MS.gene70326:intron 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG + chr4.1:9548302-9548321 MS.gene70326:intron 15.0%
!! AACATTTCCCTTTAAATATT+TGG - chr4.1:9548250-9548269 None:intergenic 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG + chr4.1:9548240-9548259 MS.gene70326:intron 20.0%
!! AGTTATATAAAAATTACACG+AGG + chr4.1:9547693-9547712 MS.gene70326:intron 20.0%
!! TACTTCTTCCAAATATTTAA+AGG + chr4.1:9548239-9548258 MS.gene70326:intron 20.0%
!! TCTAATTAATATGTTAGTGT+AGG + chr4.1:9549710-9549729 MS.gene70326:intron 20.0%
!! TTAACAAATGACTACAAATT+GGG - chr4.1:9550265-9550284 None:intergenic 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG + chr4.1:9549391-9549410 MS.gene70326:intron 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG + chr4.1:9548288-9548307 MS.gene70326:intron 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG - chr4.1:9548238-9548257 None:intergenic 20.0%
!!! TTCACATATTTTGAAAATAG+AGG - chr4.1:9550442-9550461 None:intergenic 20.0%
! ATTTCAAAAGCTCATATTTG+TGG + chr4.1:9550648-9550667 MS.gene70326:intron 25.0%
! CAGAACATCAACATTTATAA+TGG - chr4.1:9548016-9548035 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG + chr4.1:9548014-9548033 MS.gene70326:intron 25.0%
! CCTAAATAACAAAGTGAAAA+TGG + chr4.1:9549438-9549457 MS.gene70326:intron 25.0%
! CTTAAAAAGCTTATATTTGC+AGG + chr4.1:9550703-9550722 MS.gene70326:intron 25.0%
! CTTAACAAATGACTACAAAT+TGG - chr4.1:9550266-9550285 None:intergenic 25.0%
! GATAGATAGGTATATTTACT+AGG + chr4.1:9550064-9550083 MS.gene70326:intron 25.0%
! GTATCAAATGGAATTATACA+TGG + chr4.1:9548588-9548607 MS.gene70326:intron 25.0%
! TAGTGCATATTCTTAAATCA+CGG + chr4.1:9550093-9550112 MS.gene70326:intron 25.0%
! TATATGATATGACATGAACA+CGG + chr4.1:9550178-9550197 MS.gene70326:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG + chr4.1:9548499-9548518 MS.gene70326:CDS 25.0%
!! AAGTATATATTTTGCTACAG+AGG + chr4.1:9550512-9550531 MS.gene70326:intron 25.0%
!! AGATAAATTTGGAATTGGAA+TGG - chr4.1:9548916-9548935 None:intergenic 25.0%
!! ATATAGGAGTTTTCTAAACT+AGG - chr4.1:9550163-9550182 None:intergenic 25.0%
!! ATGGATTGAATACAATTTCA+CGG - chr4.1:9547810-9547829 None:intergenic 25.0%
!! CTGCAAATATAAGCTTTTTA+AGG - chr4.1:9550705-9550724 None:intergenic 25.0%
!! TAATTAGAGCATTAATGCTA+TGG - chr4.1:9549698-9549717 None:intergenic 25.0%
!! TACTCAGATAAATTTGGAAT+TGG - chr4.1:9548921-9548940 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG - chr4.1:9548927-9548946 None:intergenic 25.0%
!! TGAAAAAGGAAATTCCATTT+TGG - chr4.1:9549181-9549200 None:intergenic 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG - chr4.1:9549441-9549460 None:intergenic 25.0%
!!! TATTGCTTGTTTTTTCAGAT+TGG + chr4.1:9550322-9550341 MS.gene70326:intron 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG + chr4.1:9548576-9548595 MS.gene70326:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG + chr4.1:9549273-9549292 MS.gene70326:intron 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG + chr4.1:9549272-9549291 MS.gene70326:intron 25.0%
AAATGGTAGTTTATACCGTT+TGG + chr4.1:9547839-9547858 MS.gene70326:intron 30.0%
AAGTACCAATGTGAAGAAAT+AGG + chr4.1:9550290-9550309 MS.gene70326:intron 30.0%
AATATTTAACTAGTGCCCTA+AGG + chr4.1:9548375-9548394 MS.gene70326:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG + chr4.1:9547840-9547859 MS.gene70326:intron 30.0%
AATGTAATGGTCAATTACCT+TGG - chr4.1:9547663-9547682 None:intergenic 30.0%
ACATATAACACAGATCTTTG+TGG + chr4.1:9548649-9548668 MS.gene70326:intron 30.0%
ACTACCATTTCAATGAACAA+TGG - chr4.1:9547829-9547848 None:intergenic 30.0%
AGAAGGTTTAACATATGACA+AGG + chr4.1:9550373-9550392 MS.gene70326:CDS 30.0%
AGAGTTAAAAGAAGCCAAAA+TGG + chr4.1:9549164-9549183 MS.gene70326:intron 30.0%
AGTAAGAAGGTGAAAACTAT+TGG - chr4.1:9549496-9549515 None:intergenic 30.0%
AGTATTTCCTTAGTGGTATT+GGG + chr4.1:9549603-9549622 MS.gene70326:CDS 30.0%
ATATCAGCCATAAAAGCAAT+AGG - chr4.1:9549831-9549850 None:intergenic 30.0%
ATATTTAACTAGTGCCCTAA+GGG + chr4.1:9548376-9548395 MS.gene70326:intron 30.0%
CAATCCATTGTTCATTGAAA+TGG + chr4.1:9547822-9547841 MS.gene70326:intron 30.0%
CAATGTAACAATATGTGTTG+TGG - chr4.1:9548141-9548160 None:intergenic 30.0%
GACAAAAATGCATAAACTTG+AGG - chr4.1:9550683-9550702 None:intergenic 30.0%
GTAAGAAGGTGAAAACTATT+GGG - chr4.1:9549495-9549514 None:intergenic 30.0%
GTGTTCATGTCATATCATAT+AGG - chr4.1:9550179-9550198 None:intergenic 30.0%
GTTCAGTTATATTACCCAAA+CGG - chr4.1:9547857-9547876 None:intergenic 30.0%
TATCAGCCATAAAAGCAATA+GGG - chr4.1:9549830-9549849 None:intergenic 30.0%
TCTTTGTACCATACTTGATT+GGG + chr4.1:9549580-9549599 MS.gene70326:CDS 30.0%
TGGATTGAATACAATTTCAC+GGG - chr4.1:9547809-9547828 None:intergenic 30.0%
TGTCGAATTTCACAAAATCA+TGG - chr4.1:9550124-9550143 None:intergenic 30.0%
TTAACATATGACAAGGTTGT+TGG + chr4.1:9550380-9550399 MS.gene70326:CDS 30.0%
TTCTTTGTACCATACTTGAT+TGG + chr4.1:9549579-9549598 MS.gene70326:CDS 30.0%
! ATGTCAATCTCATTGATGAT+AGG + chr4.1:9550000-9550019 MS.gene70326:CDS 30.0%
! CTTTACCTATTTCTTCACAT+TGG - chr4.1:9550298-9550317 None:intergenic 30.0%
! TTTTTCCTGATTATCAGGAA+AGG + chr4.1:9549767-9549786 MS.gene70326:CDS 30.0%
!!! AGTTGTTTTTCCTGATTATC+AGG + chr4.1:9549762-9549781 MS.gene70326:CDS 30.0%
AAATGTTAACAAGTGCCCTT+GGG + chr4.1:9548263-9548282 MS.gene70326:intron 35.0%
AACACTTCACTTCAGATTGA+GGG + chr4.1:9548084-9548103 MS.gene70326:intron 35.0%
AAGTGTGGATATAGCATTCA+TGG + chr4.1:9548853-9548872 MS.gene70326:intron 35.0%
AATTTGATGTCGCAATGAAG+CGG - chr4.1:9548969-9548988 None:intergenic 35.0%
AGCAACAAAATCTCACTAGA+TGG + chr4.1:9550572-9550591 MS.gene70326:CDS 35.0%
ATCAACTGAGTGAAATTGGT+TGG + chr4.1:9547940-9547959 MS.gene70326:CDS 35.0%
ATCCAGTGAATATCCCAAAA+TGG - chr4.1:9549967-9549986 None:intergenic 35.0%
CAGAAGTTTAAGAATGTCCT+TGG + chr4.1:9549356-9549375 MS.gene70326:intron 35.0%
CTACAGCTTGAAATTATGAC+TGG + chr4.1:9549055-9549074 MS.gene70326:intron 35.0%
CTTGAAAAGCTTCTCTATAG+TGG + chr4.1:9550023-9550042 MS.gene70326:CDS 35.0%
CTTGATCAACTGAGTGAAAT+TGG + chr4.1:9547936-9547955 MS.gene70326:CDS 35.0%
GAAATACTCCCAATCAAGTA+TGG - chr4.1:9549591-9549610 None:intergenic 35.0%
GAGTATTTCCTTAGTGGTAT+TGG + chr4.1:9549602-9549621 MS.gene70326:CDS 35.0%
GCAACAAAATCTCACTAGAT+GGG + chr4.1:9550573-9550592 MS.gene70326:CDS 35.0%
GGATTGAATACAATTTCACG+GGG - chr4.1:9547808-9547827 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG - chr4.1:9549420-9549439 None:intergenic 35.0%
TAAAGATGATGAGTAAGGCA+TGG - chr4.1:9547501-9547520 None:intergenic 35.0%
TAACACTTCACTTCAGATTG+AGG + chr4.1:9548083-9548102 MS.gene70326:intron 35.0%
TAAGAACTACGCTTACAAGT+TGG + chr4.1:9549648-9549667 MS.gene70326:intron 35.0%
TAGCGATTGTTCAAAAGAAG+TGG - chr4.1:9549237-9549256 None:intergenic 35.0%
TCAAAAGCTCATATTTGTGG+AGG + chr4.1:9550651-9550670 MS.gene70326:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG + chr4.1:9547941-9547960 MS.gene70326:CDS 35.0%
TCCAGTGAATATCCCAAAAT+GGG - chr4.1:9549966-9549985 None:intergenic 35.0%
TTCTAAACTAGGTGTCTGTT+TGG - chr4.1:9550152-9550171 None:intergenic 35.0%
TTGATGCTAAGGAGATAGAT+AGG + chr4.1:9550051-9550070 MS.gene70326:CDS 35.0%
TTGGGATATTCACTGGATAT+TGG + chr4.1:9549969-9549988 MS.gene70326:CDS 35.0%
TTGGGTAAAGATGATGAGTA+AGG - chr4.1:9547506-9547525 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG - chr4.1:9547589-9547608 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG - chr4.1:9548758-9548777 None:intergenic 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG - chr4.1:9548757-9548776 None:intergenic 35.0%
! CACTTTTCACTTATCTACCA+AGG - chr4.1:9549376-9549395 None:intergenic 35.0%
! GTGAAGTGTTAGTGCTATAT+AGG - chr4.1:9548074-9548093 None:intergenic 35.0%
!! AGAGTTGATGAGAAGTAAGA+AGG - chr4.1:9549509-9549528 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG + chr4.1:9548838-9548857 MS.gene70326:intron 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG + chr4.1:9549936-9549955 MS.gene70326:intron 35.0%
!! TTTGGTGGTGATGATGATTA+TGG - chr4.1:9547547-9547566 None:intergenic 35.0%
AAAAGCTGCTAATAGCTGCT+TGG - chr4.1:9549741-9549760 None:intergenic 40.0%
AAATTGGTTGGGCCAAGAAA+TGG + chr4.1:9547952-9547971 MS.gene70326:CDS 40.0%
AACTAGGTGTCTGTTTGGAT+TGG - chr4.1:9550147-9550166 None:intergenic 40.0%
AACTGGATTCTTGGGTATTC+TGG + chr4.1:9548706-9548725 MS.gene70326:CDS 40.0%
AATGTTAACAAGTGCCCTTG+GGG + chr4.1:9548264-9548283 MS.gene70326:intron 40.0%
ACGAGGTTATACTCGATGAT+GGG + chr4.1:9547710-9547729 MS.gene70326:intron 40.0%
ACTTGTGATGCAGGTGAAAA+AGG - chr4.1:9549195-9549214 None:intergenic 40.0%
AGACAGCAATGCAGTTAAAG+AGG + chr4.1:9547911-9547930 MS.gene70326:CDS 40.0%
AGCTTGAAATTATGACTGGC+AGG + chr4.1:9549059-9549078 MS.gene70326:intron 40.0%
ATAGGGCAGTACTCAAAAAG+TGG - chr4.1:9549813-9549832 None:intergenic 40.0%
ATCTTTGCTGAGTTGTGGTT+TGG - chr4.1:9550551-9550570 None:intergenic 40.0%
ATGGTCAATTACCTTGGCAA+TGG - chr4.1:9547657-9547676 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG - chr4.1:9548539-9548558 None:intergenic 40.0%
CTTGTTAACCAATGCCCTTA+GGG - chr4.1:9548393-9548412 None:intergenic 40.0%
GAAAATAGAGGTCTCAAACC+TGG - chr4.1:9550430-9550449 None:intergenic 40.0%
GAAATGTTAACAAGTGCCCT+TGG + chr4.1:9548262-9548281 MS.gene70326:intron 40.0%
GATGATGTTCGCGTATGTAT+CGG + chr4.1:9548185-9548204 MS.gene70326:intron 40.0%
GCAATCCTTTCCTGATAATC+AGG - chr4.1:9549775-9549794 None:intergenic 40.0%
GCATTCATGGTTTCACATTG+TGG + chr4.1:9548866-9548885 MS.gene70326:intron 40.0%
GGTGTATCTTACATGTGTTG+TGG + chr4.1:9548105-9548124 MS.gene70326:intron 40.0%
GTAGACTAAACTTGTGATGC+AGG - chr4.1:9549204-9549223 None:intergenic 40.0%
GTTGGAACAACTGGATTCTT+GGG + chr4.1:9548698-9548717 MS.gene70326:CDS 40.0%
TAGGGCAGTACTCAAAAAGT+GGG - chr4.1:9549812-9549831 None:intergenic 40.0%
TATGACATGAACACGGAATG+TGG + chr4.1:9550185-9550204 MS.gene70326:intron 40.0%
TCTTGTTAACCAATGCCCTT+AGG - chr4.1:9548394-9548413 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG - chr4.1:9548465-9548484 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG - chr4.1:9547562-9547581 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG + chr4.1:9548486-9548505 MS.gene70326:CDS 40.0%
TTCTGACACTAGGAATTGCA+AGG - chr4.1:9548529-9548548 None:intergenic 40.0%
TTGCTTATTGCTATGTCCCT+TGG - chr4.1:9548047-9548066 None:intergenic 40.0%
TTTACTGTGGTTGGAACAAC+TGG + chr4.1:9548689-9548708 MS.gene70326:CDS 40.0%
! ATGTTCTGGATAGATGCCAA+GGG + chr4.1:9548028-9548047 MS.gene70326:intron 40.0%
! CAGATTGGCTGTTGTATCAA+TGG + chr4.1:9550337-9550356 MS.gene70326:intron 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG - chr4.1:9547590-9547609 None:intergenic 40.0%
! GCTTTTCTCTTTACTGTGGT+TGG + chr4.1:9548680-9548699 MS.gene70326:CDS 40.0%
! GGTAGGCTTGTAGTCTTTTA+TGG + chr4.1:9549092-9549111 MS.gene70326:intron 40.0%
! GGTTGATGTTGAAGCATGTT+TGG - chr4.1:9547565-9547584 None:intergenic 40.0%
! TAATGCTTGTTGACTGATGC+AGG + chr4.1:9549548-9549567 MS.gene70326:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG + chr4.1:9549609-9549628 MS.gene70326:CDS 40.0%
! TTGTTGACTGATGCAGGATT+GGG + chr4.1:9549554-9549573 MS.gene70326:intron 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG + chr4.1:9549596-9549615 MS.gene70326:CDS 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG + chr4.1:9549821-9549840 MS.gene70326:intron 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG + chr4.1:9549304-9549323 MS.gene70326:intron 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG + chr4.1:9549962-9549981 MS.gene70326:CDS 40.0%
AACACAGATCTTTGTGGTGC+AGG + chr4.1:9548655-9548674 MS.gene70326:intron 45.0%
ACCGTACGACGTGAAACATA+TGG - chr4.1:9547987-9548006 None:intergenic 45.0%
ACTTCTTAACAAGTGCCCCA+AGG - chr4.1:9548282-9548301 None:intergenic 45.0%
ATTATGACTGGCAGGCCATT+TGG + chr4.1:9549067-9549086 MS.gene70326:intron 45.0%
CACGAGGTTATACTCGATGA+TGG + chr4.1:9547709-9547728 MS.gene70326:intron 45.0%
CGAGGTTATACTCGATGATG+GGG + chr4.1:9547711-9547730 MS.gene70326:intron 45.0%
CTCTGGTTGTGAATTTAGGG+AGG - chr4.1:9547586-9547605 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG + chr4.1:9548485-9548504 MS.gene70326:CDS 45.0%
CTTCTTAACAAGTGCCCCAA+GGG - chr4.1:9548281-9548300 None:intergenic 45.0%
CTTTGCCATCGATGCCATTA+AGG - chr4.1:9550777-9550796 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG + chr4.1:9547983-9548002 MS.gene70326:CDS 45.0%
GCCTATACCCAATACCACTA+AGG - chr4.1:9549613-9549632 None:intergenic 45.0%
GCTATGGCAAACACTGAAGA+GGG - chr4.1:9549682-9549701 None:intergenic 45.0%
GGTTGGAACAACTGGATTCT+TGG + chr4.1:9548697-9548716 MS.gene70326:CDS 45.0%
GTCGATCCATGAAGCCTTAA+TGG + chr4.1:9550760-9550779 MS.gene70326:CDS 45.0%
TAGTGGTCAGCTTGATGCTA+AGG + chr4.1:9550040-9550059 MS.gene70326:CDS 45.0%
TCGATGCCATTAAGGCTTCA+TGG - chr4.1:9550769-9550788 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG - chr4.1:9548460-9548479 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG + chr4.1:9547643-9547662 MS.gene70326:CDS 45.0%
TGCTATGGCAAACACTGAAG+AGG - chr4.1:9549683-9549702 None:intergenic 45.0%
TGCTGATCTTTGCTGAGTTG+TGG - chr4.1:9550556-9550575 None:intergenic 45.0%
TGGCTGAGAACTCCATTTCT+TGG - chr4.1:9547967-9547986 None:intergenic 45.0%
TGTAAGCGTAGTTCTTACCC+AGG - chr4.1:9549645-9549664 None:intergenic 45.0%
TGTTGTATCAATGGCTGGAC+TGG + chr4.1:9550346-9550365 MS.gene70326:CDS 45.0%
TTGGCTGTTGTATCAATGGC+TGG + chr4.1:9550341-9550360 MS.gene70326:CDS 45.0%
! CTGCTTGGCTTACCCATTTT+GGG + chr4.1:9549951-9549970 MS.gene70326:CDS 45.0%
! CTTGTTGACTGATGCAGGAT+TGG + chr4.1:9549553-9549572 MS.gene70326:intron 45.0%
! GATGTTCTGGATAGATGCCA+AGG + chr4.1:9548027-9548046 MS.gene70326:intron 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG + chr4.1:9548676-9548695 MS.gene70326:intron 45.0%
! TCTGCTTGGCTTACCCATTT+TGG + chr4.1:9549950-9549969 MS.gene70326:CDS 45.0%
! TGAAGCCTTAATGGCATCGA+TGG + chr4.1:9550769-9550788 MS.gene70326:CDS 45.0%
! TGCTGATCTTTTCACTCTCC+AGG + chr4.1:9550409-9550428 MS.gene70326:CDS 45.0%
! TGTTGACTGATGCAGGATTG+GGG + chr4.1:9549555-9549574 MS.gene70326:intron 45.0%
!! AATGGCATCGATGGCAAAGA+AGG + chr4.1:9550778-9550797 MS.gene70326:CDS 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG + chr4.1:9549305-9549324 MS.gene70326:intron 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG - chr4.1:9547637-9547656 None:intergenic 45.0%
AGTGCAAGGGATACATACCC+CGG - chr4.1:9548744-9548763 None:intergenic 50.0%
CTACAAGCCTACCAGCCAAA+TGG - chr4.1:9549085-9549104 None:intergenic 50.0%
GGATTCTTGGGTATTCTGGC+TGG + chr4.1:9548710-9548729 MS.gene70326:CDS 50.0%
GTATAGGCAGCACATCTCCT+GGG + chr4.1:9549625-9549644 MS.gene70326:CDS 50.0%
TGAGCCCGTCAACTTCAAAG+AGG - chr4.1:9549312-9549331 None:intergenic 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG + chr4.1:9548382-9548401 MS.gene70326:intron 50.0%
!! CTCGATGATGGGGAACATGA+AGG + chr4.1:9547721-9547740 MS.gene70326:intron 50.0%
GGTATAGGCAGCACATCTCC+TGG + chr4.1:9549624-9549643 MS.gene70326:CDS 55.0%
GTGCAAGGGATACATACCCC+GGG - chr4.1:9548743-9548762 None:intergenic 55.0%
TGCAGCAGAGGAAGAAGCTC+TGG - chr4.1:9547603-9547622 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG - chr4.1:9547626-9547645 None:intergenic 55.0%
GCTTCTTCCTCTGCTGCACC+TGG + chr4.1:9547605-9547624 MS.gene70326:CDS 60.0%
GGATACATACCCCGGGAAGC+TGG - chr4.1:9548736-9548755 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG + chr4.1:9549071-9549090 MS.gene70326:intron 60.0%
TGGCAGGCCATTTGGCTGGT+AGG + chr4.1:9549075-9549094 MS.gene70326:intron 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG + chr4.1:9548722-9548741 MS.gene70326:CDS 60.0%
!! ATGGCTGGACTGGCAGCAGA+AGG + chr4.1:9550356-9550375 MS.gene70326:CDS 60.0%
GTCGACACCAGGTGCAGCAG+AGG - chr4.1:9547615-9547634 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG + chr4.1:9548723-9548742 MS.gene70326:CDS 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG + chr4.1:9548724-9548743 MS.gene70326:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 9547433 9550844 9547433 ID=MS.gene70326
chr4.1 mRNA 9547433 9550844 9547433 ID=MS.gene70326.t1;Parent=MS.gene70326
chr4.1 exon 9547433 9547437 9547433 ID=MS.gene70326.t1.exon1;Parent=MS.gene70326.t1
chr4.1 CDS 9547433 9547437 9547433 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9547604 9547664 9547604 ID=MS.gene70326.t1.exon2;Parent=MS.gene70326.t1
chr4.1 CDS 9547604 9547664 9547604 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9547909 9548004 9547909 ID=MS.gene70326.t1.exon3;Parent=MS.gene70326.t1
chr4.1 CDS 9547909 9548004 9547909 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9548479 9548553 9548479 ID=MS.gene70326.t1.exon4;Parent=MS.gene70326.t1
chr4.1 CDS 9548479 9548553 9548479 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9548677 9548745 9548677 ID=MS.gene70326.t1.exon5;Parent=MS.gene70326.t1
chr4.1 CDS 9548677 9548745 9548677 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9549570 9549646 9549570 ID=MS.gene70326.t1.exon6;Parent=MS.gene70326.t1
chr4.1 CDS 9549570 9549646 9549570 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9549732 9549820 9549732 ID=MS.gene70326.t1.exon7;Parent=MS.gene70326.t1
chr4.1 CDS 9549732 9549820 9549732 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9549943 9550072 9549943 ID=MS.gene70326.t1.exon8;Parent=MS.gene70326.t1
chr4.1 CDS 9549943 9550072 9549943 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9550340 9550430 9550340 ID=MS.gene70326.t1.exon9;Parent=MS.gene70326.t1
chr4.1 CDS 9550340 9550430 9550340 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9550532 9550597 9550532 ID=MS.gene70326.t1.exon10;Parent=MS.gene70326.t1
chr4.1 CDS 9550532 9550597 9550532 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
chr4.1 exon 9550725 9550844 9550725 ID=MS.gene70326.t1.exon11;Parent=MS.gene70326.t1
chr4.1 CDS 9550725 9550844 9550725 ID=cds.MS.gene70326.t1;Parent=MS.gene70326.t1
Gene Sequence

>MS.gene70326

ATGAGGTTGGAACAATTACAACGAATACAGATAACAAAGCGATAATAATATAATGTTGATCACAACCATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGGTAATTGACCATTACATTTTTTATTTGAAGTTATATAAAAATTACACGAGGTTATACTCGATGATGGGGAACATGAAGGTTTTCTAAATTTCAAGTTCAAGTTAGATATTTTTTTTGTTATATGCTTAAAATAAAATAATCCCCGTGAAATTGTATTCAATCCATTGTTCATTGAAATGGTAGTTTATACCGTTTGGGTAATATAACTGAACTAACAAGTATGTAAATAAATGTGTTTGTGCAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGGTTAGTGTCCATTATAAATGTTGATGTTCTGGATAGATGCCAAGGGACATAGCAATAAGCAATGCACCTATATAGCACTAACACTTCACTTCAGATTGAGGGTGTATCTTACATGTGTTGTGGACTGTCGTGTCCACAACACATATTGTTACATTGAATCAATTTTCTTAAATTTTTATCGATGATGTTCGCGTATGTATCGGTCTTTCTAGTCAAGTATATTATTTTGTCCAATACTTCTTCCAAATATTTAAAGGGAAATGTTAACAAGTGCCCTTGGGGCACTTGTTAAGAAGTTTAAAAAGGAAATTTTATCTTGGGAATGATTTATTCAGCACATTGAAAGTTTAAAAAGTAACTTTATCTACAAAATATTTAACTAGTGCCCTAAGGGCATTGGTTAACAAGACCCATATTTAAATATTCATATGCAAGCTTCGTTATTCGTTTAACCTCTCCAAATTTGTGCGACAGACATCACTTCGAGAGCTGACAACTTTAGGGATTAAAAATGCGGAGAACCTTGCAATTCCTAGTGTCAGAAATGATGTGAGTTTTCAGAATTTCTTTCTCTATTTTTGCAGTATCAAATGGAATTATACATGGCATATGACTTTCTTGAGAATTAAGTTTTTTCAAGTACAACATATAACACAGATCTTTGTGGTGCAGGCAGCTTTTCTCTTTACTGTGGTTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGTATGTATCCCTTGCACTCTTCTTTGTTACTTTGTATGTCTGTTTGATGATCTTGTGTATGATAATCTGTTTTTAGAAATATGATGAAGTCTAGTAGTGTTATTTGCAAGTGTGGATATAGCATTCATGGTTTCACATTGTGGTTGTAGTCAAGCACATTTGTATATCCATTCCAATTCCAAATTTATCTGAGTACTTTGAAGTCTGCATCAAAGTGCATCCGCTTCATTGCGACATCAAATTGTATATTTTTTCGTGATTTTCAAAAGCATCACAACGTGATACTGTAGACATATCGCTTAATGTAGTCTACAGCTTGAAATTATGACTGGCAGGCCATTTGGCTGGTAGGCTTGTAGTCTTTTATGGATTATAAATGATATCTTGATAATTAGAGTTTTTTTTTAAGAAGATAATTAGAGTTAAAAGAAGCCAAAATGGAATTTCCTTTTTCACCTGCATCACAAGTTTAGTCTACATACTATATTCCACTTCTTTTGAACAATCGCTAGCAATAGTGATAATTTTCTGCATTATGCTTTTTTTAGGGTTTAGAATTGTCTCCTCTTTGAAGTTGACGGGCTCATACATTTAGCTTATGACTATTAAACAGAAGTTTAAGAATGTCCTTGGTAGATAAGTGAAAAGTGTAAATATTTTAGAACTGGATTCCTTTTAACTTGCTTGTTATGCCTAAATAACAAAGTGAAAATGGAAAATAAGTTTTGTTTGAAAATAATTTTGCTCCCAATAGTTTTCACCTTCTTACTTCTCATCAACTCTCTCATTTATCATCTGTGATTAATGCTTGTTGACTGATGCAGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGGTAAGAACTACGCTTACAAGTTGGCAAGAATGCCCTCTTCAGTGTTTGCCATAGCATTAATGCTCTAATTAATATGTTAGTGTAGGCTTCTCCAAGCAGCTATTAGCAGCTTTTCAGTTGTTTTTCCTGATTATCAGGAAAGGATTGCTAGACATGAAGCAGCCCACTTTTTGAGTACTGCCCTATTGCTTTTATGGCTGATATTCATTCACAAAGTATCAGATATATCATATATGTCTTATCAATTTCATCATGACTCTAACTCAGCTTCTTCTTTTTGTTCATTCTATTTCTAGTTGCTTATCTGCTTGGCTTACCCATTTTGGGATATTCACTGGATATTGGAAAAGAGCATGTCAATCTCATTGATGATAGGCTTGAAAAGCTTCTCTATAGTGGTCAGCTTGATGCTAAGGAGATAGATAGGTATATTTACTAGGAAACTTTAGTGCATATTCTTAAATCACGGTAGCACCATGATTTTGTGAAATTCGACACCAATCCAAACAGACACCTAGTTTAGAAAACTCCTATATGATATGACATGAACACGGAATGTGGTGAAAATTAAAAATCATAAGACATGTCACAACTATAATAAAATGAAGAAATTATCCCAATTTGTAGTCATTTGTTAAGAACAAAGTACCAATGTGAAGAAATAGGTAAAGTTGTTATTGCTTGTTTTTTCAGATTGGCTGTTGTATCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTTGTTGGTCAATCTGCTGATCTTTTCACTCTCCAGGTTTGAGACCTCTATTTTCAAAATATGTGAATATTATTAAACTACTCACTAGTATTATTGAATCAAATAATAATTTTAAAAAAGTATATATTTTGCTACAGAGGTTTATAAACAGAACCAAACCACAACTCAGCAAAGATCAGCAACAAAATCTCACTAGATGGGCAGTAAGTTCTTCTATAACACAGAGCTAGACACAAATTAGCATTGCAGATATATTTCAAAAGCTCATATTTGTGGAGGTTTAGTCCTCAAGTTTATGCATTTTTGTCCTTAAAAAGCTTATATTTGCAGGTTTTGTTCGCTGCTTCTCTATTGAAAAACAACAAGTCGATCCATGAAGCCTTAATGGCATCGATGGCAAAGAAGGCAAGTGTACTCGAGTGCATTCAAACAATCGAAAGTGCATCATAG

Protein sequence

>MS.gene70326.t1

MRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVVGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGLLQAAISSFSVVFPDYQERIARHEAAHFLIAYLLGLPILGYSLDIGKEHVNLIDDRLEKLLYSGQLDAKEIDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKSIHEALMASMAKKASVLECIQTIESAS