AlfalfaGEDB | MS.gene93036

M. sativa cultivar XinJiangDaYe / MS.gene93036

KEGG: -
GO: -
PFAM: PF03788.17 PF04172.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93036.t1	XP_013446235.1	98.7	458	6	0	1	458	1	458	6.80E-242	846.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93036.t1	Q9FVQ4	78.2	455	97	1	6	458	58	512	6.5e-193	674.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93036.t1	A0A072TS64	98.7	458	6	0	1	458	1	458	4.9e-242	846.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene93036	0.801599	8.35E-49	-1.69E-46
MS.gene049171	MS.gene93036	0.929343	7.96E-93	-1.69E-46
MS.gene049173	MS.gene93036	0.880655	4.59E-70	-1.69E-46
MS.gene049217	MS.gene93036	0.895242	1.15E-75	-1.69E-46
MS.gene049222	MS.gene93036	0.935981	3.60E-97	-1.69E-46
MS.gene049232	MS.gene93036	0.904454	1.21E-79	-1.69E-46
MS.gene049285	MS.gene93036	0.951494	1.81E-109	-1.69E-46
MS.gene049312	MS.gene93036	-0.818654	1.75E-52	-1.69E-46
MS.gene049320	MS.gene93036	0.936864	8.76E-98	-1.69E-46
MS.gene04939	MS.gene93036	0.84541	4.13E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93036.t1	MTR_8g070830	98.690	458	6	0	1	458	1	458	0.0	898
MS.gene93036.t1	MTR_8g070830	96.718	457	15	0	2	458	56	512	0.0	871

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93036.t1	AT1G32080	78.462	455	96	2	6	458	58	512	0.0	702

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Find 100 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGAGACACAATACTGA+GGG	0.638521	8.2:+32388653	None:intergenic
AAAGAAGGAACATAGAACAA+AGG	0.555936	8.2:+32391521	None:intergenic
AAAGATATACCTGCTGCTTC+TGG	0.344354	8.2:-32391476	MS.gene93036:CDS
AAAGGCGACGGCTTTCCCAT+AGG	0.599962	8.2:+32390751	None:intergenic
AAATCAGCTGAAACTGATTC+TGG	0.238581	8.2:-32392092	MS.gene93036:CDS
AAATCCCATTAAAATGTCAC+CGG	0.587350	8.2:+32389539	None:intergenic
AACAAGACGTCCAACAAGGG+CGG	0.666041	8.2:+32388734	None:intergenic
AACAGCAGCATTGTCTGCCA+AGG	0.617766	8.2:-32387815	MS.gene93036:CDS
AACATATAGACTCACATTAT+GGG	0.426469	8.2:+32392052	None:intergenic
AACATCCCAAACAATGCACT+AGG	0.636833	8.2:+32391650	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGGAACATAGAACAA+AGG	+	chr8.2:32388342-32388361	None:intergenic	30.0%
AAAGATATATCATGCCGAAA+TGG	+	chr8.2:32390232-32390251	None:intergenic	30.0%
AAATCCCATTAAAATGTCAC+CGG	+	chr8.2:32390324-32390343	None:intergenic	30.0%
AAGAAAGGTAAACCATCTAT+AGG	-	chr8.2:32390388-32390407	MS.gene93036:intron	30.0%
AAGAAGGAACATAGAACAAA+GGG	+	chr8.2:32388341-32388360	None:intergenic	30.0%
AAGAGAATTAAGTCTGTACA+AGG	+	chr8.2:32390922-32390941	None:intergenic	30.0%
AAGCTATCATGTAGAACTTA+CGG	-	chr8.2:32390740-32390759	MS.gene93036:CDS	30.0%
AATTAGTCCACGTACAATAT+AGG	-	chr8.2:32390076-32390095	MS.gene93036:intron	30.0%
ACTCGTAACATAACTAGAAA+TGG	-	chr8.2:32391899-32391918	MS.gene93036:intron	30.0%
ACTTTGGTTGCTAATTAACT+AGG	-	chr8.2:32389834-32389853	MS.gene93036:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	32387702	32392180	32387702	ID=MS.gene93036
chr8.2	mRNA	32387702	32392180	32387702	ID=MS.gene93036.t1;Parent=MS.gene93036
chr8.2	exon	32392067	32392180	32392067	ID=MS.gene93036.t1.exon1;Parent=MS.gene93036.t1
chr8.2	CDS	32392067	32392180	32392067	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1
chr8.2	exon	32391453	32391768	32391453	ID=MS.gene93036.t1.exon2;Parent=MS.gene93036.t1
chr8.2	CDS	32391453	32391768	32391453	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1
chr8.2	exon	32390601	32390862	32390601	ID=MS.gene93036.t1.exon3;Parent=MS.gene93036.t1
chr8.2	CDS	32390601	32390862	32390601	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1
chr8.2	exon	32390099	32390214	32390099	ID=MS.gene93036.t1.exon4;Parent=MS.gene93036.t1
chr8.2	CDS	32390099	32390214	32390099	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1
chr8.2	exon	32389488	32389597	32389488	ID=MS.gene93036.t1.exon5;Parent=MS.gene93036.t1
chr8.2	CDS	32389488	32389597	32389488	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1
chr8.2	exon	32388649	32388826	32388649	ID=MS.gene93036.t1.exon6;Parent=MS.gene93036.t1
chr8.2	CDS	32388649	32388826	32388649	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1
chr8.2	exon	32388395	32388524	32388395	ID=MS.gene93036.t1.exon7;Parent=MS.gene93036.t1
chr8.2	CDS	32388395	32388524	32388395	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1
chr8.2	exon	32387702	32387852	32387702	ID=MS.gene93036.t1.exon8;Parent=MS.gene93036.t1
chr8.2	CDS	32387702	32387852	32387702	ID=cds.MS.gene93036.t1;Parent=MS.gene93036.t1

Gene Sequence

>MS.gene93036

ATGCTCAATTCCAGTTTCTTGCACAAGGGTTCTCAAGAAAATTCAAAAAGCAGACAGCTTTTACCTAAATCAGCTGAAACTGATTCTGGGAACACTTCTTCACTCACCCATAATGTGAGTCTATATGTTTCTATTCATTTTGGGAGAGCCAAAAATGATTATGAAGACTTAAAATAATTGATCAGATAGGATTAATAGCTTTTATGGTTCAAATTTATTATTCAATTCAGTTTCATGTGAATCTATCCAAACATAGATTATTTCACCCTAAACTCATTTTAACTAAACTGAATTTTGTACAAGTTTAATTCAATCAAAATCAATTTTCACCACTTAGAACCAAACCAAACACACACTACTACGTCAAATTTGTGATAAATTTGAGTTTTTATTTTTTGCTTCTAAATTTCAGGTGTTTGGGGTGTTACATTTGATTGTGTCTCTGGGACTTTTTCTTGCTACGGATAAGCTTTTGAAGAAAGCATTTGTGGCTGCTGCTATCAAGTTTCCTAGTGCATTGTTTGGGATGTTTTGTATATTCTCAGTTTTGATAATTCTTGATTCTACTGTGCCATCTGCAGCTACAGCAGTGATGAACTTCTTTGAGCCTGCTTTTATGTTCATTCAGAGATGGCTCCCTTTGTTCTATGTTCCTTCTTTGGTTGTCTTGCCTCTTTCTGTTAAAGATATACCTGCTGCTTCTGGCATCAAAATTTGTCTTATTGTAGGTTGGTGCATGTATTTCTTGGTTATTTATTTACTATTTATTTATTGTTGGATTGGCTAAGTTGCTCTGAGTTTGCATTGCGAGTGACCATCTTGAGTGAATCACCATTTTAGTCCTCGAAATGGTAGGGTAGGGAGGGATCGAGCAATTAGGTCTCTGAAACTAACGAAATTCCAAAATGATCCCTGATATTGAGAACTAAGAAGCACTGACACATACATAAACACCGGACAGACACTGACACGGATACACCCTTGGTAATTGGAGAAAACGGAAGTGGTTGACTGTAACCACACGTGTCAGTGTCATACAAGTGTTGGATACCGAACGTGTCGTGCACACCTTCAACCTGAAGTGTCAGTATTACATAGATTGATTGAGAACCCTCGATCAATAATTTATTTAAATTTGGGTATGCTGATCAATGGGTTATAGATGCTTAAATAATTAGATAGCCTCAGTGTTTTATTGACTTGAGTGACAAATCTTCTCTTCTCCAAGTTTTCTTTTCAAAATCTGCATCTCCTGTATGATGTGCATATTTTGGTGCATGTTTGATGTTTGGATACTGATGTTAATAATGTTGTTCAGTTGGAGGATGGCTAGCTACACTTTGTGTTGCTGGTTACACAGCTATAGCAGTACGAAAAGCTGTGAAAACAGAATTGATAGATGCCGAGCCTATGGGAAAGCCGTCGCCTTTTTCTCAAGTAGAAGTGTGGACATGGACTGGGATTCTCCTAACATCATTTGTTAGTGCAGTATTTTATCCAACATTACTGGGGACAAGTGCTAGAACATGCCTTCCGTTTTTGCTTGCAGCCACAGTGTTAGGCTACATGGTTGGTTCTGGGTAAAATATATTCGTTTTTACTACTGATATTCAAATTGACAATTGCTTTTTTCCTATTCACACAAGGTTTAAAATTGAAAAACAAGTATTCCTTTATGAGTTTAGCTTTTATATAATGCCAGTGTAAAACGTTTTACACTGTCAACAAATCAAAATCAATCATATGTGTGATTTTAGAAGTAGTTATGATTGAAGTCAAACATTTTTAATGTTATGACAAGTATGATTGATTGACAGTGTAAAAAATCTTTAAACTGACAGTGTATATGAATTAAGTCGTTCTTTATCACATGCTTATGCTATTGGAATTTTATTACCAACTGTTATGGTATGTAATTCAATTTTTTATTTGAGGTTGATTCATTGTTGCTGTTATTTTCTTTCAGGTTGCCATCAAATGTGAAGAAGGTCTTCCATCCTATAATTTGCTGTGCACTATCTGCAGTTTTGACAGCATTTGCTTTCGGGTATTTTTCAAAGTTAGGGCTTGATCCTGTTCTAGGTATGTTTGAAGATAACTATATAATTACTCTATCATGAAAGTTGGTGCCAACTTTGGTTGCTAATTAACTAGGAAAAGAAACTCAAGTTCATAAATAACAAGTTTGAAACTTCCTTCTGATTGCAAACACCGAATGACAAACAGTCAAGCATTTCAAATCTTCTGGCAAGTTACCTAAGGAAACCAGTTTTTCTTTGTCCCCAATGTCTTGAAATATGCAACTCGTTGATTTATTTTAGTCCCGATAATGTATATTTTTCGTTTTAGTTTGTGTAATATTTGATTTATGTTCAATTAGTCCACGTACAATATAGGGACTAAAAAAAAATAGTACCGACACTAATGAGAAATTAATATATGTTCAAGTCATTTTTTCTTTAGCTTTGCTTTCACATCACGGTTCCTCTTTCTCGACCACTATGCCTAGTAAATTTTATAGTCAAAGCCATTTCGGCATGATATATCTTTAGTTTTTGTTGACTCTTCTCTCAACATTCATAGGATATTACCTTACCAACACATCCGCCAATCCTGGAGCCGGTGACATTTTAATGGGATTTTTGGGATCTGTTATTCTCTCCTTTTCCTTCTCCATGTTCAAGCAAAGAAAGGTAAACCATCTATAGGTTTCCTCATGAAATAAATCTTATACTTCTGCTAAAAACTAAAGCAGACAAATACAACAATGTCTCGTTTGTTTTTACTGCATATTTTTTATTTACTTATTCTTTTTGTTCTTGGTAAATCATTGGGCTATTTAGAGTTTGATTTAAGTTGAAGGGCCCTGTTTGGATAAACAACTCAATTAGGCACTTATATTATAGCATAAACACTTATTATTTAAGTGGCTATGTATAAACTATTTTATAACAAAAGGCAAAATAAAGTCAAACTGTTTATGTAACCAAAAAAAAAAAAGTCAAACTGTTTCCATATAAGCTATAAGTTGTTTTCATAAGCTATCATGTAGAACTTACGGAAATAAGCTAAAATCAGTTTATGAACAGTTGATACGATGTTTCCATAAGCTTTCAATAACAGTCTTACAAATGCTTATGCCAGTAAATAAATTCAAAAATGTCAATCCAAACAGGATATGAATTCAAACTTGAAGAGCAGAGAATAGTGTACATATCCTTGTACAGACTTAATTCTCTTTCCAATCACTAACCAAATAAAAAACTTGTTTTCCAACATTTTTCTTTCTCATACCATAGTTAAACAGCGGCTAAACCGTTACTCATTAACCATTGATTTGTTTTCTATATTCAGCTTGTGAAAAGGCATGCAGCTGAGATTTTCACTTCTGTCATCATCTCAACAGTATTCTCACTGTACTCAACCGCCCTTGTTGGACGTCTTGTTCAATTAGAACCATCCTTAACCGTGTCCATTCTACCCAGATGTATAACAGTGGCATTGGCCCTCAGTATTGTGTCTCTGTTTGATGGTAAGTATCATGCCTGGACTGCAAACGTTCATCCCAATAATCATTAAATGGATGCTCTAAATTTTGATTTGTATTTGATTGTACTTTAGTTCCATCACTGAAAAATTCTATTTTCTGTGTACAGGTGCCAATCCATCTCTCACAGCAGCAGTGGTTGTAGTAACTGGTCTGGTTGGGGCGAATTTCGTGCAAGCAACTCTTGATAAACTCAGATTTAGTGATCCGATTGCTCGAGGAATAGCAACTGCTTCTAGGTATTTTTTCGCTAACCAATATTTTGTTCGCTTACCAAAAACCCTTTATCTTTGCATCACACACTGAAATTGCATTTGGATTATACACTCTGGTGGAGAGGTGTGGAGTCTTACAATTCCCATATCCCCGTTTTAATTTGGTCTATACGTAGTTTGTCTGTCAGGTAGTCTTAAAATTTAGGTTGGGTTGGTCTAACTCAACCCTACAAAACTGGCCTGTTAGATGAGAAATGTCAATGTAACTCTTAGCACATTCTCTCACGTCTAGGCTAGACATCTGGAGTGTGACTTGAGCAGCCCCAATAGGGGGTGGCCCATTGGATTTTAAACAGATTCTGATACCAGGTTGTAAGGTGAGGGATGCCTACCACTTATAAACTCATTTCCAGGTCATATTTCATCCAATGTGAAACTCGTAACATAACTAGAAATGGTATTGATAAGAAGAATTTTTATTGATTCTGGTAACATACAAGCATAGAAAAATATTTTCTTCTTCATGCATATGTGTGATTGTTTGCTCTTGAATAAATTTTGTACAGTGCTCATGGGCTTGGAACAGCAGCATTGTCTGCCAAGGAACCCGAGGCTCTCCCATTCTGTGCCATTGCGTATGCTTTGAATGGCATATTTGGATCTATACTATGTTCAATTCCAATTGTGAGACAAAGCTTGCTTGCAGTTATTGGCTGA

Protein sequence

>MS.gene93036.t1

MLNSSFLHKGSQENSKSRQLLPKSAETDSGNTSSLTHNVFGVLHLIVSLGLFLATDKLLKKAFVAAAIKFPSALFGMFCIFSVLIILDSTVPSAATAVMNFFEPAFMFIQRWLPLFYVPSLVVLPLSVKDIPAASGIKICLIVVGGWLATLCVAGYTAIAVRKAVKTELIDAEPMGKPSPFSQVEVWTWTGILLTSFVSAVFYPTLLGTSARTCLPFLLAATVLGYMVGSGLPSNVKKVFHPIICCALSAVLTAFAFGYFSKLGLDPVLGYYLTNTSANPGAGDILMGFLGSVILSFSFSMFKQRKLVKRHAAEIFTSVIISTVFSLYSTALVGRLVQLEPSLTVSILPRCITVALALSIVSLFDGANPSLTAAVVVVTGLVGANFVQATLDKLRFSDPIARGIATASSAHGLGTAALSAKEPEALPFCAIAYALNGIFGSILCSIPIVRQSLLAVIG