AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene95041


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95041.t1 MTR_4g134780 99.112 563 5 0 1 563 17 579 0.0 1154
MS.gene95041.t1 MTR_1g054965 31.681 565 319 21 17 550 42 570 2.22e-63 218
MS.gene95041.t1 MTR_1g054965 33.803 355 216 12 203 550 72 414 1.05e-50 181
MS.gene95041.t1 MTR_1g054965 29.880 502 285 21 17 488 42 506 5.77e-43 161
MS.gene95041.t1 MTR_1g054965 31.164 292 182 12 203 488 30 308 1.19e-30 122
MS.gene95041.t1 MTR_8g077580 24.315 584 327 26 24 534 4 545 1.22e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene95041.t1 AT1G57770 80.952 525 100 0 39 563 50 574 0.0 901
MS.gene95041.t1 AT1G06820 31.758 529 310 16 39 550 75 569 1.55e-65 224
MS.gene95041.t1 AT1G06820 31.758 529 310 16 39 550 75 569 2.09e-65 224
MS.gene95041.t1 AT1G06820 34.181 354 216 9 203 550 108 450 3.56e-53 188
MS.gene95041.t1 AT1G06820 29.501 461 276 15 39 483 75 502 1.17e-44 166
MS.gene95041.t1 AT5G49555 22.460 561 352 23 31 534 3 537 8.03e-14 74.7

Find 145 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAAGAGTCAAGTATT+TGG 0.236602 8.2:+134107 None:intergenic
ATTGCTCACAACAGCCTTCT+TGG 0.241353 8.2:+133357 None:intergenic
TGCTCAAGTTCTTGATGCTT+TGG 0.242947 8.2:-134455 MS.gene95041:CDS
TCAAGAATGGCAGAAGCTTT+TGG 0.272982 8.2:-134305 MS.gene95041:CDS
TTACTTTCTTTCTTGCTTGC+TGG 0.273947 8.2:-134052 MS.gene95041:CDS
TGCCATTCTTGAACAGCTTC+AGG 0.275584 8.2:+134316 None:intergenic
GAGTCAAGTATTTGGGAAAA+AGG 0.286218 8.2:+134115 None:intergenic
GCTCAAGTTCTTGATGCTTT+GGG 0.288521 8.2:-134454 MS.gene95041:CDS
TTCCAAAGTCTTACTCAAAT+AGG 0.312564 8.2:-133291 MS.gene95041:CDS
ATCATATAGTTGTAAATGAT+TGG 0.312848 8.2:-133104 MS.gene95041:CDS
AACTCAAATGGTTCAGTTCC+TGG 0.320765 8.2:+132976 None:intergenic
ATCTTTCATGCATCTCCATT+TGG 0.323021 8.2:-133245 MS.gene95041:CDS
CTGAGGACCCATTTGGAAAA+AGG 0.326579 8.2:+134168 None:intergenic
GCTGGTACAGATACCTTTCC+TGG 0.338263 8.2:-132669 MS.gene95041:CDS
TTGCAAAGAGTCAAGTATTT+GGG 0.338675 8.2:+134108 None:intergenic
AGCTTTAAGATTTCTGTATT+CGG 0.338946 8.2:+132927 None:intergenic
CTATCTGTTCGAGGAGATTT+CGG 0.340613 8.2:-134238 MS.gene95041:CDS
GTGTTACATGCTTATCTTCC+AGG 0.349073 8.2:-132994 MS.gene95041:CDS
CAACAATAAAGGTGTGGAAT+TGG 0.355420 8.2:+132636 None:intergenic
TCTTTCATGCATCTCCATTT+GGG 0.358441 8.2:-133244 MS.gene95041:CDS
TCCCAGCTGCTTGATGCAAT+TGG 0.358531 8.2:-132522 MS.gene95041:CDS
CCTGCGCTACTTATGATTCA+TGG 0.371994 8.2:-134420 MS.gene95041:CDS
GAAACAGATGTAATTGTGAT+TGG 0.389065 8.2:-134664 MS.gene95041:CDS
ATCCTATTTGAGTAAGACTT+TGG 0.389095 8.2:+133289 None:intergenic
TGGAGTCTCCACAACAATAA+AGG 0.393345 8.2:+132625 None:intergenic
AGAATCCTTTCATACGCAAT+TGG 0.397759 8.2:-134081 MS.gene95041:CDS
ACTCCTAATCTGGCACCTAC+TGG 0.397996 8.2:-133024 MS.gene95041:CDS
TTCCAATTGCATCAAGCAGC+TGG 0.400845 8.2:+132520 None:intergenic
CATTTCTCCCTGCTGAATCC+TGG 0.401568 8.2:+132774 None:intergenic
TCATATAGTTGTAAATGATT+GGG 0.417919 8.2:-133103 MS.gene95041:CDS
TAGTGTACTTACTCCTAATC+TGG 0.419014 8.2:-133034 MS.gene95041:CDS
AACTGAACCATTTGAGTTGT+GGG 0.419173 8.2:-132971 MS.gene95041:CDS
CAGGGTATACGCAGCGATCT+AGG 0.420176 8.2:-133132 MS.gene95041:CDS
TCCGGTCCATCATTATTCTC+TGG 0.421373 8.2:-134511 MS.gene95041:CDS
ATTGTGATTGGGAGTGGTAT+TGG 0.424946 8.2:-134652 MS.gene95041:CDS
GTCATAGTAATGGGAGGATT+AGG 0.428264 8.2:-134735 MS.gene95041:CDS
GTTGTAAATGATTGGGAAAG+AGG 0.432129 8.2:-133096 MS.gene95041:CDS
GAGCAGCCTGAGGACCCATT+TGG 0.432543 8.2:+134161 None:intergenic
TCACACATCAAAGGTTTCTT+CGG 0.434054 8.2:-132725 MS.gene95041:CDS
GTACGAGGACTAGAGAAGTT+TGG 0.436491 8.2:-133546 MS.gene95041:CDS
ATCATCATAGTCATAGTAAT+GGG 0.437707 8.2:-134744 MS.gene95041:CDS
CGTGACAAGAAATCAGCTTC+AGG 0.438051 8.2:+134385 None:intergenic
AAATCTCCTCGAACAGATAG+AGG 0.446661 8.2:+134241 None:intergenic
ACTGCAGGGACGCCAATGCC+AGG 0.458440 8.2:+132597 None:intergenic
AAATGTGAAGTGAAGTTAGT+TGG 0.458953 8.2:-132756 MS.gene95041:CDS
ACTTTGGAACAACTTCTTGA+GGG 0.464503 8.2:+133305 None:intergenic
GCACCACTGGCAGCAACTGC+AGG 0.466053 8.2:+132582 None:intergenic
TCTGTACCAGCTTGTATAGC+TGG 0.473355 8.2:+132681 None:intergenic
CAGTGGGACCAGGATTCAGC+AGG 0.478022 8.2:-132782 MS.gene95041:CDS
AGGTTTACATGTTTGCAGAA+TGG 0.481167 8.2:-133632 MS.gene95041:CDS
AAAGGCTATAAGTTTGATTC+CGG 0.484501 8.2:-134529 MS.gene95041:CDS
GATTAGGAAAGGTGGGGTTG+TGG 0.485581 8.2:-134719 MS.gene95041:CDS
ATTCCACACCTTTATTGTTG+TGG 0.492890 8.2:-132633 MS.gene95041:CDS
AAACAGATGTAATTGTGATT+GGG 0.492966 8.2:-134663 MS.gene95041:CDS
CATCATCATAGTCATAGTAA+TGG 0.495952 8.2:-134745 MS.gene95041:CDS
GTGGAGAGAGCAGTGGGACC+AGG 0.499060 8.2:-132792 MS.gene95041:CDS
ATGGGAGGATTAGGAAAGGT+GGG 0.499467 8.2:-134726 MS.gene95041:CDS
CAGCACCTCCAGCATGGTCG+TGG 0.499748 8.2:+134569 None:intergenic
CGGAGGAACAGAGGAACATA+TGG 0.499814 8.2:-132705 MS.gene95041:CDS
AGTCCTTCCCACAACTCAAA+TGG 0.501774 8.2:+132964 None:intergenic
CAATACCTGCAGCTCCATCA+AGG 0.503593 8.2:+133580 None:intergenic
TCCCTTGTCTACAGCTGCAA+TGG 0.505505 8.2:-134272 MS.gene95041:CDS
AGAAATCAGCTTCAGGTACA+TGG 0.506854 8.2:+134392 None:intergenic
CTCCTAATCTGGCACCTACT+GGG 0.508705 8.2:-133023 MS.gene95041:CDS
GCTTCTCAGCTTCACTCCAA+TGG 0.509152 8.2:+133467 None:intergenic
CCTCAGCATCAAATCCCAAA+TGG 0.511011 8.2:+133230 None:intergenic
CCATGAATCATAAGTAGCGC+AGG 0.513899 8.2:+134420 None:intergenic
GACGCCAATGCCAGGAAAAG+TGG 0.514468 8.2:+132605 None:intergenic
TAGTATATTGTCTGCAGAGA+TGG 0.518916 8.2:-134017 MS.gene95041:intron
TTCCCAGTAGGTGCCAGATT+AGG 0.527245 8.2:+133021 None:intergenic
ACCAGAGAATAATGATGGAC+CGG 0.531175 8.2:+134510 None:intergenic
GAACTGAACCATTTGAGTTG+TGG 0.531241 8.2:-132972 MS.gene95041:CDS
ATTAGCTACAATTGCACCAC+TGG 0.535074 8.2:+132569 None:intergenic
GACTTTGGAACAACTTCTTG+AGG 0.536940 8.2:+133304 None:intergenic
GTCCTGAAGCTGTTCAAGAA+TGG 0.537122 8.2:-134318 MS.gene95041:CDS
TCAATCCAATTGCGTATGAA+AGG 0.537955 8.2:+134076 None:intergenic
TGCAAACCAGAGAATAATGA+TGG 0.543994 8.2:+134505 None:intergenic
TTCGAAAGCCACGACCATGC+TGG 0.544052 8.2:-134577 MS.gene95041:CDS
TTCTCTGGTTTGCAGTCAAG+AGG 0.544317 8.2:-134496 MS.gene95041:CDS
AAGGACCTTCACAACTATGC+AGG 0.545742 8.2:-134340 MS.gene95041:CDS
CGCTACTTATGATTCATGGA+TGG 0.556127 8.2:-134416 MS.gene95041:CDS
GTCCCTGCAGTTGCTGCCAG+TGG 0.557851 8.2:-132585 MS.gene95041:CDS
AGCCATTGCAGCTGTAGACA+AGG 0.561564 8.2:+134270 None:intergenic
AATACCTGCAGCTCCATCAA+GGG 0.564396 8.2:+133581 None:intergenic
TCCAATTGCATCAAGCAGCT+GGG 0.566641 8.2:+132521 None:intergenic
GTGATTGGGAGTGGTATTGG+TGG 0.570399 8.2:-134649 MS.gene95041:CDS
GCATCAAGAACTTGAGCAAG+AGG 0.572179 8.2:+134460 None:intergenic
GTTGAAAATGACAGAGCCAT+TGG 0.574831 8.2:-133483 MS.gene95041:CDS
CCATTTGGGATTTGATGCTG+AGG 0.576837 8.2:-133230 MS.gene95041:intron
TTTGCAGTCAAGAGGTCCAC+AGG 0.577098 8.2:-134488 MS.gene95041:CDS
CACATCAAAGGTTTCTTCGG+AGG 0.578196 8.2:-132722 MS.gene95041:CDS
CAGGACCTGCATAGTTGTGA+AGG 0.579792 8.2:+134335 None:intergenic
AGAGCAGTGGAGAGAGCAGT+GGG 0.579813 8.2:-132798 MS.gene95041:CDS
GAAGTCCACTCACACATCAA+AGG 0.579934 8.2:-132734 MS.gene95041:CDS
GCAGTTCGTACATGCCAAGA+AGG 0.580617 8.2:-133371 MS.gene95041:intron
GAGAGCAGTGGAGAGAGCAG+TGG 0.581460 8.2:-132799 MS.gene95041:CDS
ATCATAAGTAGCGCAGGGGA+CGG 0.583077 8.2:+134426 None:intergenic
ACTGAGTTGTGCAGCACTGT+TGG 0.584888 8.2:-134626 MS.gene95041:CDS
AATGGGAGGATTAGGAAAGG+TGG 0.589689 8.2:-134727 MS.gene95041:CDS
GCCATTGCAGCTGTAGACAA+GGG 0.590322 8.2:+134271 None:intergenic
CGAGGACTAGAGAAGTTTGG+TGG 0.591605 8.2:-133543 MS.gene95041:CDS
CAAACAACAAATAGATAATG+TGG 0.592493 8.2:-132821 MS.gene95041:intron
GATGTAATTGTGATTGGGAG+TGG 0.593011 8.2:-134658 MS.gene95041:CDS
AATCTCCTCGAACAGATAGA+GGG 0.593766 8.2:+134242 None:intergenic
AGATTAGGAGTAAGTACACT+AGG 0.595451 8.2:+133036 None:intergenic
GCTGATTTCTTGTCACGCAT+AGG 0.597690 8.2:-134379 MS.gene95041:CDS
CACCACTGGCAGCAACTGCA+GGG 0.605933 8.2:+132583 None:intergenic
TGGAGTTGAATGTCCAGGAA+AGG 0.606615 8.2:+132656 None:intergenic
CATGAATCATAAGTAGCGCA+GGG 0.607675 8.2:+134421 None:intergenic
GAACCATTTGAGTTGTGGGA+AGG 0.609081 8.2:-132967 MS.gene95041:CDS
TTTGCAGAATGGTACAAACC+AGG 0.612324 8.2:-133621 MS.gene95041:CDS
TATGGACCAGCTATACAAGC+TGG 0.613740 8.2:-132687 MS.gene95041:CDS
TTGCAGAATGGTACAAACCA+GGG 0.620272 8.2:-133620 MS.gene95041:CDS
ATAGATAATGTGGAGAGCAG+TGG 0.622582 8.2:-132811 MS.gene95041:intron
GGAATTGGAGTTGAATGTCC+AGG 0.624562 8.2:+132651 None:intergenic
AGTAATGGGAGGATTAGGAA+AGG 0.625364 8.2:-134730 MS.gene95041:CDS
AGGTTTCTTCGGAGGAACAG+AGG 0.626999 8.2:-132714 MS.gene95041:CDS
GACTAGAGAAGTTTGGTGGG+CGG 0.629357 8.2:-133539 MS.gene95041:CDS
ATTGTTGATGCTCTTGTACG+AGG 0.629566 8.2:-133561 MS.gene95041:CDS
CATCAAGAACTTGAGCAAGA+GGG 0.633604 8.2:+134461 None:intergenic
ATTGGAGTGAAGCTGAGAAG+CGG 0.638801 8.2:-133465 MS.gene95041:CDS
AATGAGCAGCACCTCCAGCA+TGG 0.642493 8.2:+134563 None:intergenic
ATACCTGCAGCTCCATCAAG+GGG 0.643456 8.2:+133582 None:intergenic
TCTTAAAGCTCAAAGATCAG+AGG 0.643901 8.2:-132914 MS.gene95041:intron
TGCAGAATGGTACAAACCAG+GGG 0.644445 8.2:-133619 MS.gene95041:CDS
ATCTCCTCGAACAGATAGAG+GGG 0.646167 8.2:+134243 None:intergenic
ATCATAGTCATAGTAATGGG+AGG 0.651087 8.2:-134741 MS.gene95041:CDS
AAAAGGTGAGAGAAGTTGTG+TGG 0.652152 8.2:+134132 None:intergenic
TGTAACACATGTTTCCCAGT+AGG 0.652977 8.2:+133009 None:intergenic
TGAGCAAGAGGGTTAGCCTG+TGG 0.654171 8.2:+134472 None:intergenic
GATTTCTCTTCAAAGTCACG+TGG 0.656256 8.2:-133517 MS.gene95041:CDS
GAGGACTAGAGAAGTTTGGT+GGG 0.661720 8.2:-133542 MS.gene95041:CDS
TCTCCACAACAATAAAGGTG+TGG 0.665845 8.2:+132630 None:intergenic
AGAAACCTTTGATGTGTGAG+TGG 0.673422 8.2:+132729 None:intergenic
AGGTGCATATCTAGCAGCAG+CGG 0.676346 8.2:+134204 None:intergenic
GAAAGCCACGACCATGCTGG+AGG 0.682926 8.2:-134574 MS.gene95041:CDS
TGGGAGGATTAGGAAAGGTG+GGG 0.683293 8.2:-134725 MS.gene95041:CDS
AGTGGGACCAGGATTCAGCA+GGG 0.693423 8.2:-132781 MS.gene95041:CDS
TGTGAGCAATGCATCAATGT+GGG 0.699079 8.2:-133344 MS.gene95041:CDS
TTGTGAGCAATGCATCAATG+TGG 0.700183 8.2:-133345 MS.gene95041:CDS
TCTCCTCGAACAGATAGAGG+GGG 0.703760 8.2:+134244 None:intergenic
GTGGAACGAAGAGCAGCCTG+AGG 0.714071 8.2:+134151 None:intergenic
ATGAATCATAAGTAGCGCAG+GGG 0.721253 8.2:+134422 None:intergenic
GCAGAATGGTACAAACCAGG+GGG 0.746992 8.2:-133618 MS.gene95041:CDS
TACCTGCAGCTCCATCAAGG+GGG 0.749948 8.2:+133583 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAATTAATATACTTACT+TGG + chr8.2:133860-133879 None:intergenic 15.0%
!!! TGATTTTTAAGAAATGAAAT+TGG + chr8.2:133531-133550 None:intergenic 15.0%
!! ATAACACATAAATCTCTAAA+GGG - chr8.2:133448-133467 MS.gene95041:intron 20.0%
!! ATCATATAGTTGTAAATGAT+TGG - chr8.2:134195-134214 MS.gene95041:CDS 20.0%
!! TCATATAGTTGTAAATGATT+GGG - chr8.2:134196-134215 MS.gene95041:CDS 20.0%
! AAACAGATGTAATTGTGATT+GGG - chr8.2:132636-132655 MS.gene95041:CDS 25.0%
! ATCATCATAGTCATAGTAAT+GGG - chr8.2:132555-132574 MS.gene95041:CDS 25.0%
! CAAACAACAAATAGATAATG+TGG - chr8.2:134478-134497 MS.gene95041:CDS 25.0%
! CATAACACATAAATCTCTAA+AGG - chr8.2:133447-133466 MS.gene95041:intron 25.0%
!! TTCAATACCTTTTTCCAAAT+GGG - chr8.2:133124-133143 MS.gene95041:CDS 25.0%
!! TTTCAATACCTTTTTCCAAA+TGG - chr8.2:133123-133142 MS.gene95041:CDS 25.0%
!!! AAAAAGGTATTGAAAAGAGA+AGG + chr8.2:133118-133137 None:intergenic 25.0%
!!! AGCTTTAAGATTTCTGTATT+CGG + chr8.2:134375-134394 None:intergenic 25.0%
AAAGGCTATAAGTTTGATTC+CGG - chr8.2:132770-132789 MS.gene95041:CDS 30.0%
AAATGTGAAGTGAAGTTAGT+TGG - chr8.2:134543-134562 MS.gene95041:CDS 30.0%
AGGATAGAAACTAGTTATTG+TGG + chr8.2:133389-133408 None:intergenic 30.0%
ATCCTATTTGAGTAAGACTT+TGG + chr8.2:134013-134032 None:intergenic 30.0%
CATCATCATAGTCATAGTAA+TGG - chr8.2:132554-132573 MS.gene95041:CDS 30.0%
GAAACAGATGTAATTGTGAT+TGG - chr8.2:132635-132654 MS.gene95041:CDS 30.0%
TTCCAAAGTCTTACTCAAAT+AGG - chr8.2:134008-134027 MS.gene95041:intron 30.0%
TTGCAAAGAGTCAAGTATTT+GGG + chr8.2:133194-133213 None:intergenic 30.0%
ACCTAAAAGCAGCAGTTAAA+TGG - chr8.2:133550-133569 MS.gene95041:CDS 35.0%
ACTGTCTCTAAGTAAACAAC+AGG + chr8.2:133494-133513 None:intergenic 35.0%
AGAATCCTTTCATACGCAAT+TGG - chr8.2:133218-133237 MS.gene95041:intron 35.0%
AGATTAGGAGTAAGTACACT+AGG + chr8.2:134266-134285 None:intergenic 35.0%
AGGTTTACATGTTTGCAGAA+TGG - chr8.2:133667-133686 MS.gene95041:intron 35.0%
ATCTTTCATGCATCTCCATT+TGG - chr8.2:134054-134073 MS.gene95041:CDS 35.0%
ATTCCACACCTTTATTGTTG+TGG - chr8.2:134666-134685 MS.gene95041:CDS 35.0%
GAAAACTAACGAAATAGTGC+TGG - chr8.2:133576-133595 MS.gene95041:CDS 35.0%
GAATACTTCAAACAGATGCA+TGG + chr8.2:134134-134153 None:intergenic 35.0%
GAGTCAAGTATTTGGGAAAA+AGG + chr8.2:133187-133206 None:intergenic 35.0%
GTTGCAAAGAGTCAAGTATT+TGG + chr8.2:133195-133214 None:intergenic 35.0%
GTTGTAAATGATTGGGAAAG+AGG - chr8.2:134203-134222 MS.gene95041:CDS 35.0%
TAGTATATTGTCTGCAGAGA+TGG - chr8.2:133282-133301 MS.gene95041:CDS 35.0%
TAGTGTACTTACTCCTAATC+TGG - chr8.2:134265-134284 MS.gene95041:CDS 35.0%
TCAATCCAATTGCGTATGAA+AGG + chr8.2:133226-133245 None:intergenic 35.0%
TCACACATCAAAGGTTTCTT+CGG - chr8.2:134574-134593 MS.gene95041:CDS 35.0%
TCTGCACAAAAAAATGAGAG+AGG + chr8.2:133409-133428 None:intergenic 35.0%
TCTTAAAGCTCAAAGATCAG+AGG - chr8.2:134385-134404 MS.gene95041:CDS 35.0%
TCTTTCATGCATCTCCATTT+GGG - chr8.2:134055-134074 MS.gene95041:CDS 35.0%
TGCAAACCAGAGAATAATGA+TGG + chr8.2:132797-132816 None:intergenic 35.0%
TTACTTTCTTTCTTGCTTGC+TGG - chr8.2:133247-133266 MS.gene95041:CDS 35.0%
! AGGTCCTACTGAGTTTTTAA+AGG - chr8.2:132940-132959 MS.gene95041:CDS 35.0%
! AGGTCCTTTAAAAACTCAGT+AGG + chr8.2:132947-132966 None:intergenic 35.0%
! ATCATAGTCATAGTAATGGG+AGG - chr8.2:132558-132577 MS.gene95041:CDS 35.0%
! CAACAATAAAGGTGTGGAAT+TGG + chr8.2:134666-134685 None:intergenic 35.0%
! GCTCATTCTTTTGATGTCAA+AGG - chr8.2:132752-132771 MS.gene95041:CDS 35.0%
!! AACTGAACCATTTGAGTTGT+GGG - chr8.2:134328-134347 MS.gene95041:CDS 35.0%
!! ACTTTGGAACAACTTCTTGA+GGG + chr8.2:133997-134016 None:intergenic 35.0%
!!! TCCATTTAACTGCTGCTTTT+AGG + chr8.2:133554-133573 None:intergenic 35.0%
AAAAGGTGAGAGAAGTTGTG+TGG + chr8.2:133170-133189 None:intergenic 40.0%
AAACATGTAAACCTGAGGGA+AGG + chr8.2:133661-133680 None:intergenic 40.0%
AAATCTCCTCGAACAGATAG+AGG + chr8.2:133061-133080 None:intergenic 40.0%
AACATGTAAACCTGAGGGAA+GGG + chr8.2:133660-133679 None:intergenic 40.0%
AACTCAAATGGTTCAGTTCC+TGG + chr8.2:134326-134345 None:intergenic 40.0%
AATCTCCTCGAACAGATAGA+GGG + chr8.2:133060-133079 None:intergenic 40.0%
AGAAACCTTTGATGTGTGAG+TGG + chr8.2:134573-134592 None:intergenic 40.0%
AGAAATCAGCTTCAGGTACA+TGG + chr8.2:132910-132929 None:intergenic 40.0%
ATAGATAATGTGGAGAGCAG+TGG - chr8.2:134488-134507 MS.gene95041:CDS 40.0%
ATGAATCATAAGTAGCGCAG+GGG + chr8.2:132880-132899 None:intergenic 40.0%
ATTAGCTACAATTGCACCAC+TGG + chr8.2:134733-134752 None:intergenic 40.0%
ATTGTGATTGGGAGTGGTAT+TGG - chr8.2:132647-132666 MS.gene95041:CDS 40.0%
ATTGTTGATGCTCTTGTACG+AGG - chr8.2:133738-133757 MS.gene95041:intron 40.0%
CATCAAGAACTTGAGCAAGA+GGG + chr8.2:132841-132860 None:intergenic 40.0%
CATGAATCATAAGTAGCGCA+GGG + chr8.2:132881-132900 None:intergenic 40.0%
CGCTACTTATGATTCATGGA+TGG - chr8.2:132883-132902 MS.gene95041:intron 40.0%
CTATCTGTTCGAGGAGATTT+CGG - chr8.2:133061-133080 MS.gene95041:CDS 40.0%
CTGCAAACATGTAAACCTGA+GGG + chr8.2:133665-133684 None:intergenic 40.0%
GATGTAATTGTGATTGGGAG+TGG - chr8.2:132641-132660 MS.gene95041:CDS 40.0%
GATTTCTCTTCAAAGTCACG+TGG - chr8.2:133782-133801 MS.gene95041:intron 40.0%
GCTCAAGTTCTTGATGCTTT+GGG - chr8.2:132845-132864 MS.gene95041:intron 40.0%
GTGTTACATGCTTATCTTCC+AGG - chr8.2:134305-134324 MS.gene95041:CDS 40.0%
GTTGAAAATGACAGAGCCAT+TGG - chr8.2:133816-133835 MS.gene95041:intron 40.0%
TATTCAACATCGAGTGAGCA+GGG - chr8.2:134149-134168 MS.gene95041:CDS 40.0%
TCTCCACAACAATAAAGGTG+TGG + chr8.2:134672-134691 None:intergenic 40.0%
TCTGCAAACATGTAAACCTG+AGG + chr8.2:133666-133685 None:intergenic 40.0%
TGCTCAAGTTCTTGATGCTT+TGG - chr8.2:132844-132863 MS.gene95041:intron 40.0%
TGGAGTCTCCACAACAATAA+AGG + chr8.2:134677-134696 None:intergenic 40.0%
TGTAACACATGTTTCCCAGT+AGG + chr8.2:134293-134312 None:intergenic 40.0%
TGTGAGCAATGCATCAATGT+GGG - chr8.2:133955-133974 MS.gene95041:intron 40.0%
TTGCAGAATGGTACAAACCA+GGG - chr8.2:133679-133698 MS.gene95041:intron 40.0%
TTGTGAGCAATGCATCAATG+TGG - chr8.2:133954-133973 MS.gene95041:intron 40.0%
TTTGCAGAATGGTACAAACC+AGG - chr8.2:133678-133697 MS.gene95041:intron 40.0%
! AATGATTGCACGTTGATGAG+TGG + chr8.2:133340-133359 None:intergenic 40.0%
! AGTAATGGGAGGATTAGGAA+AGG - chr8.2:132569-132588 MS.gene95041:CDS 40.0%
! GTCATAGTAATGGGAGGATT+AGG - chr8.2:132564-132583 MS.gene95041:CDS 40.0%
! TCAAGAATGGCAGAAGCTTT+TGG - chr8.2:132994-133013 MS.gene95041:CDS 40.0%
!! ACCAGAGAATAATGATGGAC+CGG + chr8.2:132792-132811 None:intergenic 40.0%
!! GAACTGAACCATTTGAGTTG+TGG - chr8.2:134327-134346 MS.gene95041:CDS 40.0%
!! GACTTTGGAACAACTTCTTG+AGG + chr8.2:133998-134017 None:intergenic 40.0%
!! TGATGAGTGGTAATGGCAAT+TGG + chr8.2:133327-133346 None:intergenic 40.0%
AAGGACCTTCACAACTATGC+AGG - chr8.2:132959-132978 MS.gene95041:CDS 45.0%
AATACCTGCAGCTCCATCAA+GGG + chr8.2:133721-133740 None:intergenic 45.0%
AATGGGAGGATTAGGAAAGG+TGG - chr8.2:132572-132591 MS.gene95041:CDS 45.0%
AGTCCTTCCCACAACTCAAA+TGG + chr8.2:134338-134357 None:intergenic 45.0%
ATCTCCTCGAACAGATAGAG+GGG + chr8.2:133059-133078 None:intergenic 45.0%
ATGGGAGGATTAGGAAAGGT+GGG - chr8.2:132573-132592 MS.gene95041:CDS 45.0%
ATTGCTCACAACAGCCTTCT+TGG + chr8.2:133945-133964 None:intergenic 45.0%
ATTGGAGTGAAGCTGAGAAG+CGG - chr8.2:133834-133853 MS.gene95041:intron 45.0%
CACATCAAAGGTTTCTTCGG+AGG - chr8.2:134577-134596 MS.gene95041:CDS 45.0%
CCATGAATCATAAGTAGCGC+AGG + chr8.2:132882-132901 None:intergenic 45.0%
CCTCAGCATCAAATCCCAAA+TGG + chr8.2:134072-134091 None:intergenic 45.0%
CCTGCGCTACTTATGATTCA+TGG - chr8.2:132879-132898 MS.gene95041:intron 45.0%
CGTGACAAGAAATCAGCTTC+AGG + chr8.2:132917-132936 None:intergenic 45.0%
CTGAGGACCCATTTGGAAAA+AGG + chr8.2:133134-133153 None:intergenic 45.0%
GAAGTCCACTCACACATCAA+AGG - chr8.2:134565-134584 MS.gene95041:CDS 45.0%
GAGGACTAGAGAAGTTTGGT+GGG - chr8.2:133757-133776 MS.gene95041:intron 45.0%
GCATCAAGAACTTGAGCAAG+AGG + chr8.2:132842-132861 None:intergenic 45.0%
GGAATTGGAGTTGAATGTCC+AGG + chr8.2:134651-134670 None:intergenic 45.0%
GTACGAGGACTAGAGAAGTT+TGG - chr8.2:133753-133772 MS.gene95041:intron 45.0%
GTATTCAACATCGAGTGAGC+AGG - chr8.2:134148-134167 MS.gene95041:CDS 45.0%
GTCCTGAAGCTGTTCAAGAA+TGG - chr8.2:132981-133000 MS.gene95041:CDS 45.0%
TATGGACCAGCTATACAAGC+TGG - chr8.2:134612-134631 MS.gene95041:CDS 45.0%
TCCAATTGCATCAAGCAGCT+GGG + chr8.2:134781-134800 None:intergenic 45.0%
TCCGGTCCATCATTATTCTC+TGG - chr8.2:132788-132807 MS.gene95041:CDS 45.0%
TCTGTACCAGCTTGTATAGC+TGG + chr8.2:134621-134640 None:intergenic 45.0%
TGCAGAATGGTACAAACCAG+GGG - chr8.2:133680-133699 MS.gene95041:intron 45.0%
TGCCATTCTTGAACAGCTTC+AGG + chr8.2:132986-133005 None:intergenic 45.0%
TGGAGTTGAATGTCCAGGAA+AGG + chr8.2:134646-134665 None:intergenic 45.0%
TTCCAATTGCATCAAGCAGC+TGG + chr8.2:134782-134801 None:intergenic 45.0%
! CCATTTGGGATTTGATGCTG+AGG - chr8.2:134069-134088 MS.gene95041:CDS 45.0%
! CTTTTTCCAAATGGGTCCTC+AGG - chr8.2:133132-133151 MS.gene95041:CDS 45.0%
! GCTGATTTCTTGTCACGCAT+AGG - chr8.2:132920-132939 MS.gene95041:CDS 45.0%
! TGCACGTTGATGAGTGGTAA+TGG + chr8.2:133334-133353 None:intergenic 45.0%
! TTCTCTGGTTTGCAGTCAAG+AGG - chr8.2:132803-132822 MS.gene95041:CDS 45.0%
! TTGATGCTGAGGTGAGGTTT+TGG - chr8.2:134080-134099 MS.gene95041:CDS 45.0%
!! GAACCATTTGAGTTGTGGGA+AGG - chr8.2:134332-134351 MS.gene95041:CDS 45.0%
ACTCCTAATCTGGCACCTAC+TGG - chr8.2:134275-134294 MS.gene95041:CDS 50.0%
ACTGAGTTGTGCAGCACTGT+TGG - chr8.2:132673-132692 MS.gene95041:CDS 50.0%
AGCCATTGCAGCTGTAGACA+AGG + chr8.2:133032-133051 None:intergenic 50.0%
AGGTGCATATCTAGCAGCAG+CGG + chr8.2:133098-133117 None:intergenic 50.0%
AGGTTTCTTCGGAGGAACAG+AGG - chr8.2:134585-134604 MS.gene95041:CDS 50.0%
ATACCTGCAGCTCCATCAAG+GGG + chr8.2:133720-133739 None:intergenic 50.0%
ATCATAAGTAGCGCAGGGGA+CGG + chr8.2:132876-132895 None:intergenic 50.0%
CAATACCTGCAGCTCCATCA+AGG + chr8.2:133722-133741 None:intergenic 50.0%
CAGGACCTGCATAGTTGTGA+AGG + chr8.2:132967-132986 None:intergenic 50.0%
CATTTCTCCCTGCTGAATCC+TGG + chr8.2:134528-134547 None:intergenic 50.0%
CGAGGACTAGAGAAGTTTGG+TGG - chr8.2:133756-133775 MS.gene95041:intron 50.0%
CGGAGGAACAGAGGAACATA+TGG - chr8.2:134594-134613 MS.gene95041:CDS 50.0%
CTCCTAATCTGGCACCTACT+GGG - chr8.2:134276-134295 MS.gene95041:CDS 50.0%
GATTAGGAAAGGTGGGGTTG+TGG - chr8.2:132580-132599 MS.gene95041:CDS 50.0%
GCAGAATGGTACAAACCAGG+GGG - chr8.2:133681-133700 MS.gene95041:intron 50.0%
GCAGTTCGTACATGCCAAGA+AGG - chr8.2:133928-133947 MS.gene95041:intron 50.0%
GCCATTGCAGCTGTAGACAA+GGG + chr8.2:133031-133050 None:intergenic 50.0%
GCTGGTACAGATACCTTTCC+TGG - chr8.2:134630-134649 MS.gene95041:CDS 50.0%
GCTTCTCAGCTTCACTCCAA+TGG + chr8.2:133835-133854 None:intergenic 50.0%
TCCCAGCTGCTTGATGCAAT+TGG - chr8.2:134777-134796 MS.gene95041:CDS 50.0%
TCCCTTGTCTACAGCTGCAA+TGG - chr8.2:133027-133046 MS.gene95041:CDS 50.0%
TCTCCTCGAACAGATAGAGG+GGG + chr8.2:133058-133077 None:intergenic 50.0%
TGGGAGGATTAGGAAAGGTG+GGG - chr8.2:132574-132593 MS.gene95041:CDS 50.0%
TGGGATTTGATGCTGAGGTG+AGG - chr8.2:134074-134093 MS.gene95041:CDS 50.0%
TGTCTTGAGTACCCCCTTGA+TGG - chr8.2:133705-133724 MS.gene95041:intron 50.0%
TTCCCAGTAGGTGCCAGATT+AGG + chr8.2:134281-134300 None:intergenic 50.0%
TTTGCAGTCAAGAGGTCCAC+AGG - chr8.2:132811-132830 MS.gene95041:intron 50.0%
! GACTAGAGAAGTTTGGTGGG+CGG - chr8.2:133760-133779 MS.gene95041:intron 50.0%
! GTGATTGGGAGTGGTATTGG+TGG - chr8.2:132650-132669 MS.gene95041:CDS 50.0%
!! GACTCCACTTTTCCTGGCAT+TGG - chr8.2:134690-134709 MS.gene95041:CDS 50.0%
!! TGTGGAGACTCCACTTTTCC+TGG - chr8.2:134684-134703 MS.gene95041:CDS 50.0%
AATGAGCAGCACCTCCAGCA+TGG + chr8.2:132739-132758 None:intergenic 55.0%
AGAGCAGTGGAGAGAGCAGT+GGG - chr8.2:134501-134520 MS.gene95041:CDS 55.0%
AGTGGGACCAGGATTCAGCA+GGG - chr8.2:134518-134537 MS.gene95041:CDS 55.0%
CAGGGTATACGCAGCGATCT+AGG - chr8.2:134167-134186 MS.gene95041:CDS 55.0%
CTTCCCCCTCTATCTGTTCG+AGG - chr8.2:133052-133071 MS.gene95041:CDS 55.0%
GACGCCAATGCCAGGAAAAG+TGG + chr8.2:134697-134716 None:intergenic 55.0%
TACCTGCAGCTCCATCAAGG+GGG + chr8.2:133719-133738 None:intergenic 55.0%
TTCGAAAGCCACGACCATGC+TGG - chr8.2:132722-132741 MS.gene95041:CDS 55.0%
!! TGAGCAAGAGGGTTAGCCTG+TGG + chr8.2:132830-132849 None:intergenic 55.0%
CACCACTGGCAGCAACTGCA+GGG + chr8.2:134719-134738 None:intergenic 60.0%
CAGTGGGACCAGGATTCAGC+AGG - chr8.2:134517-134536 MS.gene95041:CDS 60.0%
CAGTTGCTCTCCCTTCCCTC+AGG - chr8.2:133647-133666 MS.gene95041:intron 60.0%
GAAAGCCACGACCATGCTGG+AGG - chr8.2:132725-132744 MS.gene95041:CDS 60.0%
GAGAGCAGTGGAGAGAGCAG+TGG - chr8.2:134500-134519 MS.gene95041:CDS 60.0%
GAGCAGCCTGAGGACCCATT+TGG + chr8.2:133141-133160 None:intergenic 60.0%
GTGGAACGAAGAGCAGCCTG+AGG + chr8.2:133151-133170 None:intergenic 60.0%
TACCCCCTTGATGGAGCTGC+AGG - chr8.2:133714-133733 MS.gene95041:intron 60.0%
ACTGCAGGGACGCCAATGCC+AGG + chr8.2:134705-134724 None:intergenic 65.0%
CAGCACCTCCAGCATGGTCG+TGG + chr8.2:132733-132752 None:intergenic 65.0%
GCACCACTGGCAGCAACTGC+AGG + chr8.2:134720-134739 None:intergenic 65.0%
GGGTACTCAAGACAGCCCCC+TGG + chr8.2:133699-133718 None:intergenic 65.0%
GTCCCTGCAGTTGCTGCCAG+TGG - chr8.2:134714-134733 MS.gene95041:CDS 65.0%
GTGGAGAGAGCAGTGGGACC+AGG - chr8.2:134507-134526 MS.gene95041:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 132515 134806 132515 ID=MS.gene95041
chr8.2 mRNA 132515 134806 132515 ID=MS.gene95041.t1;Parent=MS.gene95041
chr8.2 exon 134018 134806 134018 ID=MS.gene95041.t1.exon1;Parent=MS.gene95041.t1
chr8.2 CDS 134018 134806 134018 ID=cds.MS.gene95041.t1;Parent=MS.gene95041.t1
chr8.2 exon 133461 133652 133461 ID=MS.gene95041.t1.exon2;Parent=MS.gene95041.t1
chr8.2 CDS 133461 133652 133461 ID=cds.MS.gene95041.t1;Parent=MS.gene95041.t1
chr8.2 exon 133231 133389 133231 ID=MS.gene95041.t1.exon3;Parent=MS.gene95041.t1
chr8.2 CDS 133231 133389 133231 ID=cds.MS.gene95041.t1;Parent=MS.gene95041.t1
chr8.2 exon 132915 133151 132915 ID=MS.gene95041.t1.exon4;Parent=MS.gene95041.t1
chr8.2 CDS 132915 133151 132915 ID=cds.MS.gene95041.t1;Parent=MS.gene95041.t1
chr8.2 exon 132515 132829 132515 ID=MS.gene95041.t1.exon5;Parent=MS.gene95041.t1
chr8.2 CDS 132515 132829 132515 ID=cds.MS.gene95041.t1;Parent=MS.gene95041.t1
Gene Sequence

>MS.gene95041

ATGAGAGTGAGAAGATACTGTTCAAGAATTGATGATGATCATCATCATAGTCATAGTAATGGGAGGATTAGGAAAGGTGGGGTTGTGGTGCGAAACAGCAGCAACAAAGTAGATGAAACAGAAACAGATGTAATTGTGATTGGGAGTGGTATTGGTGGACTGAGTTGTGCAGCACTGTTGGCAAGATATGAACAAGATGTTGTCGTTTTCGAAAGCCACGACCATGCTGGAGGTGCTGCTCATTCTTTTGATGTCAAAGGCTATAAGTTTGATTCCGGTCCATCATTATTCTCTGGTTTGCAGTCAAGAGGTCCACAGGCTAACCCTCTTGCTCAAGTTCTTGATGCTTTGGGAGAGTCCGTCCCCTGCGCTACTTATGATTCATGGATGGTCCATGTACCTGAAGCTGATTTCTTGTCACGCATAGGTCCTACTGAGTTTTTAAAGGACCTTCACAACTATGCAGGTCCTGAAGCTGTTCAAGAATGGCAGAAGCTTTTGGATGCTGTACTTCCCTTGTCTACAGCTGCAATGGCTCTTCCCCCTCTATCTGTTCGAGGAGATTTCGGTGTTCTTTACACCGCTGCTGCTAGATATGCACCTTCTCTTTTCAATACCTTTTTCCAAATGGGTCCTCAGGCTGCTCTTCGTTCCACACAACTTCTCTCACCTTTTTCCCAAATACTTGACTCTTTGCAACTAAAGAATCCTTTCATACGCAATTGGATTGACTTACTTTCTTTCTTGCTTGCTGGTGTCAAATCTGATAGTATATTGTCTGCAGAGATGGTACTATATTTCACATATCTCCAATTGCCATTACCACTCATCAACGTGCAATCATTTATTTATATCATTACATTATTTACGACCACAATAACTAGTTTCTATCCTCTCTCATTTTTTTGTGCAGATAGATTATTAACAGTGTGCATAACACATAAATCTCTAAAGGGACTTTTGTTAAATTTTGATTCCTGTTGTTTACTTAGAGACAGTAGTAGACTAATTGACCAATTTCATTTCTTAAAAATCACCTAAAAGCAGCAGTTAAATGGATAGAAAACTAACGAAATAGTGCTGGTTGAAACATTAGTGAAACGTCATTGCTAATATTCTATTGATGACAAAACAGTTGCTCTCCCTTCCCTCAGGTTTACATGTTTGCAGAATGGTACAAACCAGGGGGCTGTCTTGAGTACCCCCTTGATGGAGCTGCAGGTATTGTTGATGCTCTTGTACGAGGACTAGAGAAGTTTGGTGGGCGGATTTCTCTTCAAAGTCACGTGGAAAAGATTGTTGTTGAAAATGACAGAGCCATTGGAGTGAAGCTGAGAAGCGGCCAAGTAAGTATATTAATTTTGAATGAATATTGATAAGAAAATATCGACTTTATCATGTGTTATGCTTGCTGCAGTTCGTACATGCCAAGAAGGCTGTTGTGAGCAATGCATCAATGTGGGATACTTTAAAATTGCTCCCTCAAGAAGTTGTTCCAAAGTCTTACTCAAATAGGATTAACACGACTAGTCAGTGTGAATCTTTCATGCATCTCCATTTGGGATTTGATGCTGAGGTGAGGTTTTGGTGATTAATTTTATTTAGTCTTTCACTTGCCATGCATCTGTTTGAAGTATTCAACATCGAGTGAGCAGGGTATACGCAGCGATCTAGGAATTCATCATATAGTTGTAAATGATTGGGAAAGAGGAGTTGACGCAGATCAGAATGTTGTGTTGATATCAGTTCCTAGTGTACTTACTCCTAATCTGGCACCTACTGGGAAACATGTGTTACATGCTTATCTTCCAGGAACTGAACCATTTGAGTTGTGGGAAGGACTTGATCGTAAGAGTGCCGAATACAGAAATCTTAAAGCTCAAAGATCAGAGGTATATATGAAATTGAATGAATGAATAACAGCAAGCAGCGTATATGCGTTTTTAATTAATGATTATTATTTCAAACAACAAATAGATAATGTGGAGAGCAGTGGAGAGAGCAGTGGGACCAGGATTCAGCAGGGAGAAATGTGAAGTGAAGTTAGTTGGAAGTCCACTCACACATCAAAGGTTTCTTCGGAGGAACAGAGGAACATATGGACCAGCTATACAAGCTGGTACAGATACCTTTCCTGGACATTCAACTCCAATTCCACACCTTTATTGTTGTGGAGACTCCACTTTTCCTGGCATTGGCGTCCCTGCAGTTGCTGCCAGTGGTGCAATTGTAGCTAATTCTCTAGTTTCAGTGTCTCAGCATTCCCAGCTGCTTGATGCAATTGGAATTTGA

Protein sequence

>MS.gene95041.t1

MRVRRYCSRIDDDHHHSHSNGRIRKGGVVVRNSSNKVDETETDVIVIGSGIGGLSCAALLARYEQDVVVFESHDHAGGAAHSFDVKGYKFDSGPSLFSGLQSRGPQANPLAQVLDALGESVPCATYDSWMVHVPEADFLSRIGPTEFLKDLHNYAGPEAVQEWQKLLDAVLPLSTAAMALPPLSVRGDFGVLYTAAARYAPSLFNTFFQMGPQAALRSTQLLSPFSQILDSLQLKNPFIRNWIDLLSFLLAGVKSDSILSAEMVYMFAEWYKPGGCLEYPLDGAAGIVDALVRGLEKFGGRISLQSHVEKIVVENDRAIGVKLRSGQFVHAKKAVVSNASMWDTLKLLPQEVVPKSYSNRINTTSQCESFMHLHLGFDAEGIRSDLGIHHIVVNDWERGVDADQNVVLISVPSVLTPNLAPTGKHVLHAYLPGTEPFELWEGLDRKSAEYRNLKAQRSEIMWRAVERAVGPGFSREKCEVKLVGSPLTHQRFLRRNRGTYGPAIQAGTDTFPGHSTPIPHLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSQLLDAIGI