AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64385


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64385.t1 MTR_2g055010 96.042 379 15 0 1 379 1 379 0.0 755
MS.gene64385.t1 MTR_2g054130 96.196 368 14 0 1 368 1 368 0.0 731
MS.gene64385.t1 MTR_4g019150 33.161 193 100 6 210 376 10 199 7.73e-19 84.3
MS.gene64385.t1 MTR_4g019130 37.640 178 85 6 211 363 11 187 1.01e-18 84.0
MS.gene64385.t1 MTR_7g104650 33.149 181 90 5 208 360 99 276 1.89e-17 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64385.t1 AT5G20140 73.885 314 81 1 56 368 51 364 9.77e-178 499
MS.gene64385.t1 AT5G20140 73.885 314 81 1 56 368 51 364 2.36e-177 498
MS.gene64385.t1 AT2G37970 34.211 190 86 6 210 360 41 230 4.14e-17 80.5
MS.gene64385.t1 AT3G10130 34.532 139 67 3 208 323 112 249 7.67e-15 75.1

Find 92 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTCACAGGTATATATT+TGG 0.154800 2.4:+35562064 MS.gene64385:intron
AAATCATCATGCTTAGTAAT+TGG 0.154857 2.4:-35559991 None:intergenic
CCTCAATTTCCTAGGACTTT+TGG 0.173770 2.4:+35561319 MS.gene64385:intron
CTACAACTTGCACCACTTTC+CGG 0.208753 2.4:+35559725 MS.gene64385:CDS
CAGACCATCTTTAATGATAT+TGG 0.210028 2.4:-35562620 None:intergenic
TTCAACTAAGCTCAGATTAA+TGG 0.251072 2.4:-35559839 None:intergenic
AAGCTAACTGTTTCTTGATT+AGG 0.251086 2.4:-35562505 None:intergenic
ACAAATGGAGACAAGCTATC+TGG 0.265343 2.4:+35561931 MS.gene64385:CDS
TGTCTGATGGAAGAACTATT+TGG 0.281044 2.4:-35562171 None:intergenic
ACTGTTTCTTGATTAGGATT+TGG 0.296904 2.4:-35562499 None:intergenic
AAACCAGAATTGGTCTTTAC+AGG 0.303338 2.4:+35561021 MS.gene64385:CDS
GTTCCTGTAAAGACCAATTC+TGG 0.315384 2.4:-35561024 None:intergenic
CTTTACAGGAACATCTGTTA+TGG 0.331343 2.4:+35561035 MS.gene64385:CDS
ATGGGTGTTAACCCAGAAAA+TGG 0.339771 2.4:+35561054 MS.gene64385:CDS
TCCCCACCTCTTTGATGATA+AGG 0.342854 2.4:+35559924 MS.gene64385:CDS
CCCCACCTCTTTGATGATAA+GGG 0.343146 2.4:+35559925 MS.gene64385:CDS
GATTTACAAGACACCAGATT+TGG 0.350699 2.4:+35561517 MS.gene64385:CDS
AACTATTTGGATTGAGACTT+TGG 0.355211 2.4:-35562158 None:intergenic
TACGGTGTCTCCGTGGTGGC+TGG 0.372285 2.4:-35559795 None:intergenic
CTCTTTGTTTCTTTGTCTGA+TGG 0.379732 2.4:-35562184 None:intergenic
TATTTGGGTGATTCCAAATC+TGG 0.380267 2.4:-35561530 None:intergenic
CATCTTGTAGTTATTTCATA+AGG 0.386402 2.4:-35560964 None:intergenic
AGCCTCAGTTTCAGTTGCAT+TGG 0.396587 2.4:+35560058 MS.gene64385:CDS
ACCGGCTTTAATGATGTTGC+TGG 0.397252 2.4:+35561958 MS.gene64385:CDS
TTTACAGGAACATCTGTTAT+GGG 0.408859 2.4:+35561036 MS.gene64385:CDS
GCCTCAGTTTCAGTTGCATT+GGG 0.419471 2.4:+35560059 MS.gene64385:CDS
GCTGCAGTAATAAAGTTTAG+TGG 0.421311 2.4:+35562550 MS.gene64385:CDS
AATCATCATGCTTAGTAATT+GGG 0.426244 2.4:-35559990 None:intergenic
TTTATTGGAAGTATTCAAAC+AGG 0.429041 2.4:+35561380 MS.gene64385:CDS
CGCTCCAATATCATTAAAGA+TGG 0.429781 2.4:+35562616 MS.gene64385:CDS
GCTTCCATGGAAACCAGAAT+TGG 0.431262 2.4:+35561011 MS.gene64385:CDS
TCGAACATGGTCCTTCATAA+TGG 0.440473 2.4:+35562687 MS.gene64385:CDS
GTGGTGCAAGTTGTAGGAAA+TGG 0.442861 2.4:-35559718 None:intergenic
GTTAGCTTGAGAAAGGTAGA+AGG 0.445389 2.4:+35562520 MS.gene64385:CDS
CGGAAAGTGGTGCAAGTTGT+AGG 0.450152 2.4:-35559724 None:intergenic
CTTGCCCGTTACAATGATCC+AGG 0.455438 2.4:+35562664 MS.gene64385:CDS
TCAGTTGCATTGGGTTAAAC+CGG 0.455907 2.4:+35560068 MS.gene64385:CDS
CCAAATATCAAATATTAAAA+CGG 0.467136 2.4:+35561546 MS.gene64385:CDS
TGAAATTCATGCTGCTTCCA+TGG 0.477688 2.4:+35560998 MS.gene64385:CDS
CAAATGGAGACAAGCTATCT+GGG 0.479821 2.4:+35561932 MS.gene64385:CDS
CATGCATATTCAAAATCAAA+TGG 0.484605 2.4:-35562737 None:intergenic
TTCGCGAACAATATCCTCCA+TGG 0.485927 2.4:-35562578 None:intergenic
AAGACCAATTCTGGTTTCCA+TGG 0.488831 2.4:-35561015 None:intergenic
GGAGGATATTGTTCGCGAAA+AGG 0.499867 2.4:+35562582 MS.gene64385:CDS
TGGTGCAAGTTGTAGGAAAT+GGG 0.500255 2.4:-35559717 None:intergenic
TTCGTAGTAGTAGAAACAAA+TGG 0.502411 2.4:+35561916 MS.gene64385:CDS
TTCGCAGCATACCATTATGA+AGG 0.511503 2.4:-35562698 None:intergenic
GACAAGCTATCTGGGAATAC+CGG 0.516068 2.4:+35561940 MS.gene64385:CDS
AGAAACAGTTAGCTTGAGAA+AGG 0.518821 2.4:+35562513 MS.gene64385:CDS
TTTGTTTCTACTACTACGAA+TGG 0.522785 2.4:-35561913 None:intergenic
TCGACCTGGATCATTGTAAC+GGG 0.527359 2.4:-35562668 None:intergenic
GGAGGTTGGTCGCCGGAAAG+TGG 0.531539 2.4:-35559737 None:intergenic
TCGATGGCTTGAGTGAATAC+AGG 0.531601 2.4:-35562124 None:intergenic
AGAGTAGTTGTGGATGTTGA+AGG 0.536229 2.4:-35559761 None:intergenic
ACCCTTATCATCAAAGAGGT+GGG 0.541717 2.4:-35559926 None:intergenic
GAAGAAGTGGAGAGTAGTTG+TGG 0.543985 2.4:-35559771 None:intergenic
TCGCGAACAATATCCTCCAT+GGG 0.547839 2.4:-35562577 None:intergenic
TACCCTTATCATCAAAGAGG+TGG 0.556746 2.4:-35559927 None:intergenic
CATCGGTATCTTCTCTGCTG+TGG 0.557509 2.4:-35562095 None:intergenic
CGTGGTGGCTGGAGAAGAAG+TGG 0.560248 2.4:-35559784 None:intergenic
ACCCAATGCAACTGAAACTG+AGG 0.565595 2.4:-35560060 None:intergenic
CCCAGCAACATCATTAAAGC+CGG 0.567439 2.4:-35561959 None:intergenic
CTTATGAAATAACTACAAGA+TGG 0.569482 2.4:+35560965 MS.gene64385:CDS
TGGATGTTGAAGGCGGAGGT+TGG 0.570197 2.4:-35559751 None:intergenic
GGAGAGAATGAAAGTGGCCA+TGG 0.571341 2.4:-35559692 None:intergenic
CCGGCTTTAATGATGTTGCT+GGG 0.579992 2.4:+35561959 MS.gene64385:CDS
TTCGACCTGGATCATTGTAA+CGG 0.580924 2.4:-35562669 None:intergenic
AAAGTTTAGTGGAAAACCCA+TGG 0.583126 2.4:+35562561 MS.gene64385:CDS
TCAAATGGCAACAATCATGA+AGG 0.583126 2.4:-35562722 None:intergenic
ACAATGATCCAGGTCGAACA+TGG 0.586299 2.4:+35562674 MS.gene64385:CDS
TGAAGGCGGAGGTTGGTCGC+CGG 0.586760 2.4:-35559744 None:intergenic
AAAACGGACAGCAAATTATG+AGG 0.586779 2.4:+35561562 MS.gene64385:CDS
CACTTCTTCTCCAGCCACCA+CGG 0.591236 2.4:+35559785 MS.gene64385:CDS
ATGAAGGACCATGTTCGACC+TGG 0.591864 2.4:-35562682 None:intergenic
TGCAAGTTGTAGGAAATGGG+TGG 0.597054 2.4:-35559714 None:intergenic
ACTAAGCATGATGATTTGAG+TGG 0.598452 2.4:+35559997 MS.gene64385:CDS
GCAAGTTGTAGGAAATGGGT+GGG 0.599564 2.4:-35559713 None:intergenic
GTTGTGGATGTTGAAGGCGG+AGG 0.602344 2.4:-35559755 None:intergenic
GTAGTTGTGGATGTTGAAGG+CGG 0.605157 2.4:-35559758 None:intergenic
GCAAGCAAACAACCAGGCTG+AGG 0.606063 2.4:-35562646 None:intergenic
CCCTTATCATCAAAGAGGTG+GGG 0.608453 2.4:-35559925 None:intergenic
CATCAGACAAAGAAACAAAG+AGG 0.609686 2.4:+35562185 MS.gene64385:CDS
GATGGTCTGAAACCTCAGCC+TGG 0.615097 2.4:+35562634 MS.gene64385:CDS
CAGCATGAATTTCATAACCA+TGG 0.617626 2.4:-35560989 None:intergenic
TTTGGACAAGTCAACATCGA+TGG 0.619340 2.4:-35562140 None:intergenic
GTGAATACAGGAGTAGTCAT+CGG 0.628384 2.4:-35562112 None:intergenic
TGGGTGGGAGAGAATGAAAG+TGG 0.629225 2.4:-35559698 None:intergenic
CAATACCCTTATCATCAAAG+AGG 0.646394 2.4:-35559930 None:intergenic
AGCTTGAGAAAGGTAGAAGG+AGG 0.657758 2.4:+35562523 MS.gene64385:CDS
TAACGGGCAAGCAAACAACC+AGG 0.667765 2.4:-35562652 None:intergenic
AATAACTACAAGATGGACCA+TGG 0.682550 2.4:+35560972 MS.gene64385:CDS
GTTTAGTGGAAAACCCATGG+AGG 0.746638 2.4:+35562564 MS.gene64385:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATCACATTAAAT+GGG + chr2.4:35559816-35559835 MS.gene64385:CDS 10.0%
!!! ATTTAATGTGATTTTTTTTA+CGG - chr2.4:35559816-35559835 None:intergenic 10.0%
!! ATAATATTGTATGAAAATCA+AGG - chr2.4:35560741-35560760 None:intergenic 15.0%
!! CCAAATATCAAATATTAAAA+CGG + chr2.4:35561546-35561565 MS.gene64385:CDS 15.0%
!! GTAAAAAAAATCACATTAAA+TGG + chr2.4:35559815-35559834 MS.gene64385:CDS 15.0%
!! TTGTTTGTATAAAATATCAT+AGG - chr2.4:35560548-35560567 None:intergenic 15.0%
!!! CGTTTTAATATTTGATATTT+GGG - chr2.4:35561548-35561567 None:intergenic 15.0%
!!! TGATTTTCATACAATATTAT+AGG + chr2.4:35560741-35560760 MS.gene64385:intron 15.0%
!!! TTATCTATGGTTTTAAATTT+TGG + chr2.4:35561123-35561142 MS.gene64385:intron 15.0%
!!! TTTTCAGCTTATTTATATAT+AGG + chr2.4:35560203-35560222 MS.gene64385:intron 15.0%
!! AATGTAATAATCACATATGT+TGG - chr2.4:35560712-35560731 None:intergenic 20.0%
!! ATATAAATAAGCTGAAAACA+TGG - chr2.4:35560201-35560220 None:intergenic 20.0%
!! ATATCAAAAGTTAACACAAA+AGG + chr2.4:35561748-35561767 MS.gene64385:intron 20.0%
!! TTAACCACTTATAGTATTAT+CGG - chr2.4:35560396-35560415 None:intergenic 20.0%
!!! AATGACTATTTTTCATTTGA+AGG + chr2.4:35561357-35561376 MS.gene64385:CDS 20.0%
!!! CCGTTTTAATATTTGATATT+TGG - chr2.4:35561549-35561568 None:intergenic 20.0%
!!! TGAATTCATTGTTTTTTTGA+TGG + chr2.4:35561867-35561886 MS.gene64385:intron 20.0%
!!! TTGAGTCATATTCATTTTTT+TGG + chr2.4:35560592-35560611 MS.gene64385:intron 20.0%
!!! TTTTTCATTTGAAGGTTTAT+TGG + chr2.4:35561365-35561384 MS.gene64385:CDS 20.0%
! AAATCATCATGCTTAGTAAT+TGG - chr2.4:35559994-35560013 None:intergenic 25.0%
! AACATATGCTTAGTAAAGAA+AGG + chr2.4:35562398-35562417 MS.gene64385:intron 25.0%
! AAGAAGAAAAAAAATGCCAA+AGG - chr2.4:35561434-35561453 None:intergenic 25.0%
! AATCATCATGCTTAGTAATT+GGG - chr2.4:35559993-35560012 None:intergenic 25.0%
! ACAAAAGGATGTATCTTATA+TGG + chr2.4:35561820-35561839 MS.gene64385:intron 25.0%
! ATTTATATATAGGCTCTGTT+TGG + chr2.4:35560213-35560232 MS.gene64385:intron 25.0%
! CTTATGAAATAACTACAAGA+TGG + chr2.4:35560965-35560984 MS.gene64385:CDS 25.0%
! GAAATCACAATAATGATAGA+TGG + chr2.4:35560235-35560254 MS.gene64385:intron 25.0%
! TAAATGAAGTGGTATTATGT+CGG + chr2.4:35561279-35561298 MS.gene64385:intron 25.0%
! TACTTCAAGTCAAAAACAAA+AGG + chr2.4:35561805-35561824 MS.gene64385:intron 25.0%
! TGTTAAAAATGTTCATTCAC+AGG + chr2.4:35562053-35562072 MS.gene64385:intron 25.0%
! TTAACCGATAATACTATAAG+TGG + chr2.4:35560389-35560408 MS.gene64385:intron 25.0%
! TTCATTCACAGGTATATATT+TGG + chr2.4:35562064-35562083 MS.gene64385:intron 25.0%
! TTCTTTACTAAGCATATGTT+TGG - chr2.4:35562398-35562417 None:intergenic 25.0%
!! ATTGGTGTTTATAAATGAAG+TGG + chr2.4:35561268-35561287 MS.gene64385:intron 25.0%
!! CATCTTGTAGTTATTTCATA+AGG - chr2.4:35560967-35560986 None:intergenic 25.0%
!! GTTAACTTTTGATATGTTTG+TGG - chr2.4:35561743-35561762 None:intergenic 25.0%
!!! GACTTGAAGTAGTTTTATAA+TGG - chr2.4:35561796-35561815 None:intergenic 25.0%
!!! TAATAGACTGAAACTTGTTT+TGG - chr2.4:35560432-35560451 None:intergenic 25.0%
!!! TGTTTTTTTGATGGTATAAC+AGG + chr2.4:35561876-35561895 MS.gene64385:intron 25.0%
!!! TTATGTCTTGTTTGTTCAAT+TGG + chr2.4:35560916-35560935 MS.gene64385:intron 25.0%
!!! TTGAAGTAGTTTTATAATGG+TGG - chr2.4:35561793-35561812 None:intergenic 25.0%
!!! TTTATTGGAAGTATTCAAAC+AGG + chr2.4:35561380-35561399 MS.gene64385:CDS 25.0%
!!! TTTTAAATTTTGGTTGCAGT+CGG + chr2.4:35561133-35561152 MS.gene64385:intron 25.0%
AACTATTTGGATTGAGACTT+TGG - chr2.4:35562161-35562180 None:intergenic 30.0%
AGAACATATAGAGACAACTT+AGG + chr2.4:35560167-35560186 MS.gene64385:intron 30.0%
AGAGGAAAAAAAGAGAGAAA+CGG - chr2.4:35560264-35560283 None:intergenic 30.0%
CAGACCATCTTTAATGATAT+TGG - chr2.4:35562623-35562642 None:intergenic 30.0%
CGATAAAAATAACCCTAAGA+CGG - chr2.4:35560116-35560135 None:intergenic 30.0%
GATAAAAATAACCCTAAGAC+GGG - chr2.4:35560115-35560134 None:intergenic 30.0%
GTTACTATGAGATATAGACA+CGG - chr2.4:35560796-35560815 None:intergenic 30.0%
TGTCTCTATATGTTCTTCTA+AGG - chr2.4:35560163-35560182 None:intergenic 30.0%
TTCAACTAAGCTCAGATTAA+TGG - chr2.4:35559842-35559861 None:intergenic 30.0%
TTCGTAGTAGTAGAAACAAA+TGG + chr2.4:35561916-35561935 MS.gene64385:CDS 30.0%
TTTACAGGAACATCTGTTAT+GGG + chr2.4:35561036-35561055 MS.gene64385:CDS 30.0%
! AAGCTAACTGTTTCTTGATT+AGG - chr2.4:35562508-35562527 None:intergenic 30.0%
! ACTGTTTCTTGATTAGGATT+TGG - chr2.4:35562502-35562521 None:intergenic 30.0%
! AGTAAAGAAAGGAAGTTTTG+TGG + chr2.4:35562409-35562428 MS.gene64385:intron 30.0%
! TAACAACTCACAGCAAATTT+TGG - chr2.4:35561468-35561487 None:intergenic 30.0%
!! TTTGTTTCTACTACTACGAA+TGG - chr2.4:35561916-35561935 None:intergenic 30.0%
!!! TACAAAACTTGCCATTTTCT+GGG - chr2.4:35561068-35561087 None:intergenic 30.0%
!!! TTTAAATTTTGGTTGCAGTC+GGG + chr2.4:35561134-35561153 MS.gene64385:intron 30.0%
AAAACGGACAGCAAATTATG+AGG + chr2.4:35561562-35561581 MS.gene64385:CDS 35.0%
AAAGTTTAGTGGAAAACCCA+TGG + chr2.4:35562561-35562580 MS.gene64385:CDS 35.0%
AAGTTCCAACTATTCAGTAC+TGG + chr2.4:35561098-35561117 MS.gene64385:intron 35.0%
AATAACTACAAGATGGACCA+TGG + chr2.4:35560972-35560991 MS.gene64385:CDS 35.0%
AATAGTTGGAACTTACCACA+TGG - chr2.4:35561092-35561111 None:intergenic 35.0%
AATTTGTCGCTCTCTATTTC+AGG + chr2.4:35562019-35562038 MS.gene64385:intron 35.0%
ACTAAGCATGATGATTTGAG+TGG + chr2.4:35559997-35560016 MS.gene64385:CDS 35.0%
CAAAAGGTAAACTCTACCTT+TGG + chr2.4:35561692-35561711 MS.gene64385:intron 35.0%
CAATACCCTTATCATCAAAG+AGG - chr2.4:35559933-35559952 None:intergenic 35.0%
CACAAACATGGAAAACAAAC+AGG - chr2.4:35562284-35562303 None:intergenic 35.0%
CACTATGTTCATGAATGAGA+AGG - chr2.4:35561592-35561611 None:intergenic 35.0%
CAGCATGAATTTCATAACCA+TGG - chr2.4:35560992-35561011 None:intergenic 35.0%
CATCAGACAAAGAAACAAAG+AGG + chr2.4:35562185-35562204 MS.gene64385:CDS 35.0%
CGATGACTAGTGTTATCAAT+TGG + chr2.4:35561250-35561269 MS.gene64385:intron 35.0%
CGCTCCAATATCATTAAAGA+TGG + chr2.4:35562616-35562635 MS.gene64385:CDS 35.0%
CTTTACAGGAACATCTGTTA+TGG + chr2.4:35561035-35561054 MS.gene64385:CDS 35.0%
GATTTACAAGACACCAGATT+TGG + chr2.4:35561517-35561536 MS.gene64385:CDS 35.0%
GCATGAATGCTCATATCAAA+AGG + chr2.4:35561676-35561695 MS.gene64385:intron 35.0%
GCTGCAGTAATAAAGTTTAG+TGG + chr2.4:35562550-35562569 MS.gene64385:CDS 35.0%
TAGGACACACTTAATGCTAT+TGG + chr2.4:35560472-35560491 MS.gene64385:intron 35.0%
TATTTGGGTGATTCCAAATC+TGG - chr2.4:35561533-35561552 None:intergenic 35.0%
TCAAATGGCAACAATCATGA+AGG - chr2.4:35562725-35562744 None:intergenic 35.0%
TGGTAGAACAAACGCTTATT+TGG + chr2.4:35560849-35560868 MS.gene64385:intron 35.0%
TGTCTGATGGAAGAACTATT+TGG - chr2.4:35562174-35562193 None:intergenic 35.0%
TTACTCTTGATGTATGCCTT+TGG + chr2.4:35561415-35561434 MS.gene64385:intron 35.0%
TTCGTATTCCTCAATTTCCT+AGG + chr2.4:35561311-35561330 MS.gene64385:intron 35.0%
! AACCCTTTATTTGTCTGAAG+CGG - chr2.4:35562335-35562354 None:intergenic 35.0%
! AGAAACAGTTAGCTTGAGAA+AGG + chr2.4:35562513-35562532 MS.gene64385:CDS 35.0%
! ATTGATAACACTAGTCATCG+AGG - chr2.4:35561250-35561269 None:intergenic 35.0%
! CTATGTGTCACTATCGTATT+CGG + chr2.4:35560767-35560786 MS.gene64385:intron 35.0%
! CTCAATTTCCTAGGACTTTT+GGG + chr2.4:35561320-35561339 MS.gene64385:intron 35.0%
! CTCTTTGTTTCTTTGTCTGA+TGG - chr2.4:35562187-35562206 None:intergenic 35.0%
! GATTTGACATTTTGCAGTTG+AGG + chr2.4:35561495-35561514 MS.gene64385:intron 35.0%
! TAACACCAGTACTGAATAGT+TGG - chr2.4:35561106-35561125 None:intergenic 35.0%
! TTGTGGTGCAGTTTTCATAA+AGG - chr2.4:35561726-35561745 None:intergenic 35.0%
!! AAACCAGAATTGGTCTTTAC+AGG + chr2.4:35561021-35561040 MS.gene64385:CDS 35.0%
!! AAATAAAGGGTTAGTTGCCT+CGG + chr2.4:35562343-35562362 MS.gene64385:intron 35.0%
!! AGTTGTTAAGCTAGCTTTAG+AGG - chr2.4:35560282-35560301 None:intergenic 35.0%
!! TTCAGTACTGGTGTTATCTA+TGG + chr2.4:35561110-35561129 MS.gene64385:intron 35.0%
!!! CTACAAAACTTGCCATTTTC+TGG - chr2.4:35561069-35561088 None:intergenic 35.0%
AAGCTAAGACGTGTATCACT+TGG - chr2.4:35562257-35562276 None:intergenic 40.0%
AAGGAAAGAGAGAAACAGAC+CGG - chr2.4:35560090-35560109 None:intergenic 40.0%
AATAACCCTAAGACGGGTAA+AGG - chr2.4:35560109-35560128 None:intergenic 40.0%
ACAAATGGAGACAAGCTATC+TGG + chr2.4:35561931-35561950 MS.gene64385:CDS 40.0%
ACCCTTATCATCAAAGAGGT+GGG - chr2.4:35559929-35559948 None:intergenic 40.0%
AGAGTAGTTGTGGATGTTGA+AGG - chr2.4:35559764-35559783 None:intergenic 40.0%
AGTGATACACGTCTTAGCTT+AGG + chr2.4:35562257-35562276 MS.gene64385:intron 40.0%
ATCTGACCCTACTGCAATTA+AGG - chr2.4:35561210-35561229 None:intergenic 40.0%
ATGCGACCTTAATTGCAGTA+GGG + chr2.4:35561201-35561220 MS.gene64385:intron 40.0%
ATGGGTGTTAACCCAGAAAA+TGG + chr2.4:35561054-35561073 MS.gene64385:CDS 40.0%
CAAATGGAGACAAGCTATCT+GGG + chr2.4:35561932-35561951 MS.gene64385:CDS 40.0%
CCAAAAGTCCTAGGAAATTG+AGG - chr2.4:35561322-35561341 None:intergenic 40.0%
CTTTAATGATGTTGCTGGGT+AGG + chr2.4:35561963-35561982 MS.gene64385:intron 40.0%
GTGAATACAGGAGTAGTCAT+CGG - chr2.4:35562115-35562134 None:intergenic 40.0%
GTTCCTGTAAAGACCAATTC+TGG - chr2.4:35561027-35561046 None:intergenic 40.0%
TACCCTTATCATCAAAGAGG+TGG - chr2.4:35559930-35559949 None:intergenic 40.0%
TAGTGAATCCCAAAAGTCCT+AGG - chr2.4:35561331-35561350 None:intergenic 40.0%
TCAGTTGCATTGGGTTAAAC+CGG + chr2.4:35560068-35560087 MS.gene64385:CDS 40.0%
TCCCGCTTCAGACAAATAAA+GGG + chr2.4:35562330-35562349 MS.gene64385:intron 40.0%
TCGAACATGGTCCTTCATAA+TGG + chr2.4:35562687-35562706 MS.gene64385:CDS 40.0%
TCTATTAACGCAAAGCGTGT+CGG + chr2.4:35560445-35560464 MS.gene64385:intron 40.0%
TCTTTCCTTTACCCGTCTTA+GGG + chr2.4:35560101-35560120 MS.gene64385:intron 40.0%
TGGTGCAAGTTGTAGGAAAT+GGG - chr2.4:35559720-35559739 None:intergenic 40.0%
TTCCCGCTTCAGACAAATAA+AGG + chr2.4:35562329-35562348 MS.gene64385:intron 40.0%
TTCGACCTGGATCATTGTAA+CGG - chr2.4:35562672-35562691 None:intergenic 40.0%
TTCGCAGCATACCATTATGA+AGG - chr2.4:35562701-35562720 None:intergenic 40.0%
TTTGGACAAGTCAACATCGA+TGG - chr2.4:35562143-35562162 None:intergenic 40.0%
! ACCCTTTATTTGTCTGAAGC+GGG - chr2.4:35562334-35562353 None:intergenic 40.0%
! CATAAAGGCACAATCACCAA+AGG - chr2.4:35561711-35561730 None:intergenic 40.0%
! CCTCAATTTCCTAGGACTTT+TGG + chr2.4:35561319-35561338 MS.gene64385:intron 40.0%
! CTGATTGAGTTGCTATAGAC+AGG + chr2.4:35560940-35560959 MS.gene64385:intron 40.0%
! GTTAGCTTGAGAAAGGTAGA+AGG + chr2.4:35562520-35562539 MS.gene64385:CDS 40.0%
! TATAAGTTGACGACTCTGCT+TGG - chr2.4:35560320-35560339 None:intergenic 40.0%
! TGAAATTCATGCTGCTTCCA+TGG + chr2.4:35560998-35561017 MS.gene64385:CDS 40.0%
!! AAGACCAATTCTGGTTTCCA+TGG - chr2.4:35561018-35561037 None:intergenic 40.0%
!! AATAAAGGGTTAGTTGCCTC+GGG + chr2.4:35562344-35562363 MS.gene64385:intron 40.0%
!! GACTTATGATCTCTGAAGCA+CGG - chr2.4:35560501-35560520 None:intergenic 40.0%
!!! TTTTTTTTACGGTGTCTCCG+TGG - chr2.4:35559805-35559824 None:intergenic 40.0%
AAGCGGGAAATCAGAGAGAT+AGG - chr2.4:35562318-35562337 None:intergenic 45.0%
ACAATGATCCAGGTCGAACA+TGG + chr2.4:35562674-35562693 MS.gene64385:CDS 45.0%
ACCCAATGCAACTGAAACTG+AGG - chr2.4:35560063-35560082 None:intergenic 45.0%
AGCCTCAGTTTCAGTTGCAT+TGG + chr2.4:35560058-35560077 MS.gene64385:CDS 45.0%
AGCTTGAGAAAGGTAGAAGG+AGG + chr2.4:35562523-35562542 MS.gene64385:CDS 45.0%
CCCAGCAACATCATTAAAGC+CGG - chr2.4:35561962-35561981 None:intergenic 45.0%
CCCTTATCATCAAAGAGGTG+GGG - chr2.4:35559928-35559947 None:intergenic 45.0%
CTACAACTTGCACCACTTTC+CGG + chr2.4:35559725-35559744 MS.gene64385:CDS 45.0%
CTATTCATTCTTGCATCCCG+AGG - chr2.4:35562363-35562382 None:intergenic 45.0%
CTCTTTCCTTTACCCGTCTT+AGG + chr2.4:35560100-35560119 MS.gene64385:intron 45.0%
GAAGAAGTGGAGAGTAGTTG+TGG - chr2.4:35559774-35559793 None:intergenic 45.0%
GACAAGCTATCTGGGAATAC+CGG + chr2.4:35561940-35561959 MS.gene64385:CDS 45.0%
GATGCGACCTTAATTGCAGT+AGG + chr2.4:35561200-35561219 MS.gene64385:intron 45.0%
GCAAGTTGTAGGAAATGGGT+GGG - chr2.4:35559716-35559735 None:intergenic 45.0%
GCCTCAGTTTCAGTTGCATT+GGG + chr2.4:35560059-35560078 MS.gene64385:CDS 45.0%
GCTTCCATGGAAACCAGAAT+TGG + chr2.4:35561011-35561030 MS.gene64385:CDS 45.0%
GGAGGATATTGTTCGCGAAA+AGG + chr2.4:35562582-35562601 MS.gene64385:CDS 45.0%
GTAGTTGTGGATGTTGAAGG+CGG - chr2.4:35559761-35559780 None:intergenic 45.0%
GTGGTGCAAGTTGTAGGAAA+TGG - chr2.4:35559721-35559740 None:intergenic 45.0%
GTTTAGTGGAAAACCCATGG+AGG + chr2.4:35562564-35562583 MS.gene64385:CDS 45.0%
TCGACCTGGATCATTGTAAC+GGG - chr2.4:35562671-35562690 None:intergenic 45.0%
TCGATGGCTTGAGTGAATAC+AGG - chr2.4:35562127-35562146 None:intergenic 45.0%
TCGCGAACAATATCCTCCAT+GGG - chr2.4:35562580-35562599 None:intergenic 45.0%
TGCAAGTTGTAGGAAATGGG+TGG - chr2.4:35559717-35559736 None:intergenic 45.0%
TTCGCGAACAATATCCTCCA+TGG - chr2.4:35562581-35562600 None:intergenic 45.0%
! ACCGGCTTTAATGATGTTGC+TGG + chr2.4:35561958-35561977 MS.gene64385:CDS 45.0%
! CCCCACCTCTTTGATGATAA+GGG + chr2.4:35559925-35559944 MS.gene64385:CDS 45.0%
! CCGGCTTTAATGATGTTGCT+GGG + chr2.4:35561959-35561978 MS.gene64385:CDS 45.0%
! TCCCCACCTCTTTGATGATA+AGG + chr2.4:35559924-35559943 MS.gene64385:CDS 45.0%
!! TGGCAAGTTTTGTAGCCATG+TGG + chr2.4:35561074-35561093 MS.gene64385:CDS 45.0%
!!! TTTATTGTATAATTTTTTTT+TGG + chr2.4:35560829-35560848 MS.gene64385:intron 5.0%
ATGAAGGACCATGTTCGACC+TGG - chr2.4:35562685-35562704 None:intergenic 50.0%
CATCGGTATCTTCTCTGCTG+TGG - chr2.4:35562098-35562117 None:intergenic 50.0%
CATTACCACGTGTCGTACAC+TGG - chr2.4:35560671-35560690 None:intergenic 50.0%
CGGAAAGTGGTGCAAGTTGT+AGG - chr2.4:35559727-35559746 None:intergenic 50.0%
CTTGCCCGTTACAATGATCC+AGG + chr2.4:35562664-35562683 MS.gene64385:CDS 50.0%
GGGAAATCAGAGAGATAGGC+AGG - chr2.4:35562314-35562333 None:intergenic 50.0%
TGGGTGGGAGAGAATGAAAG+TGG - chr2.4:35559701-35559720 None:intergenic 50.0%
! TAACGGGCAAGCAAACAACC+AGG - chr2.4:35562655-35562674 None:intergenic 50.0%
! TTTTTACGGTGTCTCCGTGG+TGG - chr2.4:35559802-35559821 None:intergenic 50.0%
CACTTCTTCTCCAGCCACCA+CGG + chr2.4:35559785-35559804 MS.gene64385:CDS 55.0%
CAGAGAGATAGGCAGGTGCA+CGG - chr2.4:35562307-35562326 None:intergenic 55.0%
CATGTCCAGTGTACGACACG+TGG + chr2.4:35560663-35560682 MS.gene64385:intron 55.0%
GCAAGCAAACAACCAGGCTG+AGG - chr2.4:35562649-35562668 None:intergenic 55.0%
GTTGTGGATGTTGAAGGCGG+AGG - chr2.4:35559758-35559777 None:intergenic 55.0%
TGGATGTTGAAGGCGGAGGT+TGG - chr2.4:35559754-35559773 None:intergenic 55.0%
! GATGGTCTGAAACCTCAGCC+TGG + chr2.4:35562634-35562653 MS.gene64385:CDS 55.0%
CGCAAAGCGTGTCGGACACT+AGG + chr2.4:35560453-35560472 MS.gene64385:intron 60.0%
CGTGGTGGCTGGAGAAGAAG+TGG - chr2.4:35559787-35559806 None:intergenic 60.0%
GCAGGTGCACGGCACAAACA+TGG - chr2.4:35562296-35562315 None:intergenic 60.0%
TACGGTGTCTCCGTGGTGGC+TGG - chr2.4:35559798-35559817 None:intergenic 65.0%
! GGAGGTTGGTCGCCGGAAAG+TGG - chr2.4:35559740-35559759 None:intergenic 65.0%
! TGAAGGCGGAGGTTGGTCGC+CGG - chr2.4:35559747-35559766 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 35559694 35562744 35559694 ID=MS.gene64385
chr2.4 mRNA 35559694 35562744 35559694 ID=MS.gene64385.t1;Parent=MS.gene64385
chr2.4 exon 35559694 35560089 35559694 ID=MS.gene64385.t1.exon1;Parent=MS.gene64385.t1
chr2.4 CDS 35559694 35560089 35559694 ID=cds.MS.gene64385.t1;Parent=MS.gene64385.t1
chr2.4 exon 35560958 35561095 35560958 ID=MS.gene64385.t1.exon2;Parent=MS.gene64385.t1
chr2.4 CDS 35560958 35561095 35560958 ID=cds.MS.gene64385.t1;Parent=MS.gene64385.t1
chr2.4 exon 35561333 35561401 35561333 ID=MS.gene64385.t1.exon3;Parent=MS.gene64385.t1
chr2.4 CDS 35561333 35561401 35561333 ID=cds.MS.gene64385.t1;Parent=MS.gene64385.t1
chr2.4 exon 35561512 35561583 35561512 ID=MS.gene64385.t1.exon4;Parent=MS.gene64385.t1
chr2.4 CDS 35561512 35561583 35561512 ID=cds.MS.gene64385.t1;Parent=MS.gene64385.t1
chr2.4 exon 35561898 35561980 35561898 ID=MS.gene64385.t1.exon5;Parent=MS.gene64385.t1
chr2.4 CDS 35561898 35561980 35561898 ID=cds.MS.gene64385.t1;Parent=MS.gene64385.t1
chr2.4 exon 35562075 35562206 35562075 ID=MS.gene64385.t1.exon6;Parent=MS.gene64385.t1
chr2.4 CDS 35562075 35562206 35562075 ID=cds.MS.gene64385.t1;Parent=MS.gene64385.t1
chr2.4 exon 35562495 35562744 35562495 ID=MS.gene64385.t1.exon7;Parent=MS.gene64385.t1
chr2.4 CDS 35562495 35562744 35562495 ID=cds.MS.gene64385.t1;Parent=MS.gene64385.t1
Gene Sequence

>MS.gene64385

ATGGCCACTTTCATTCTCTCCCACCCATTTCCTACAACTTGCACCACTTTCCGGCGACCAACCTCCGCCTTCAACATCCACAACTACTCTCCACTTCTTCTCCAGCCACCACGGAGACACCGTAAAAAAAATCACATTAAATGGGCCATTAATCTGAGCTTAGTTGAACAGAGTACACAAAAATCGAGTTTTGATTTGCAGCAACTTGTTGCGTTTCTTTACGACGATCTTCCCCACCTCTTTGATGATAAGGGTATTGATAAAAATGCTTATGATGAACGTGTCTTCTTTCGTGACCCAATTACTAAGCATGATGATTTGAGTGGTTATCTTTTCAACATTGCTCTTCTTAAGACAATCTTTAAGCCTCAGTTTCAGTTGCATTGGGTTAAACCGGTCTGTTTCTCTCTTTCCTTTACCCGTCTTAGGGTTATTTTTATCGACTTATTTGAACTTATCTATTGCACCTTAGAAGAACATATAGAGACAACTTAGGACATATGTCCATGTTTTCAGCTTATTTATATATAGGCTCTGTTTGGAAATCACAATAATGATAGATGGTGTCCGTTTCTCTCTTTTTTTCCTCTAAAGCTAGCTTAACAACTATCTGCTATTTTTTACCAAGCAGAGTCGTCAACTTATAAGAAAACAGTTTGACTTTATTTTATCTTTCGTTAAATAGCATAAGAATGTTAACCGATAATACTATAAGTGGTTAATTATGTTGCTTATCCAAAACAAGTTTCAGTCTATTAACGCAAAGCGTGTCGGACACTAGGACACACTTAATGCTATTGGTGTCCGTGCTTCAGAGATCATAAGTCTATATAATCTTATTTTAATAAGCTCCTATGATATTTTATACAAACAACTTTTCACTTTTATGTAAAGATAGTTGAGTCATATTCATTTTTTTGGTTAGAGAAATAAATTTATCTATGCAGCACAAGCACTTCATATCAATGACATGTCCAGTGTACGACACGTGGTAATGTTCGAAATCTACACGACACCAACATATGTGATTATTACATTCAATTACCTTGATTTTCATACAATATTATAGGTGTCTATGTGTCACTATCGTATTCGGTGTCCGTGTCTATATCTCATAGTAACTTAAACATAAAAATTTATTGTATAATTTTTTTTTGGTAGAACAAACGCTTATTTGGCAAGCATTTAATTAAATTGTTTAATAAAATTCATCTTAACTTTTTTATGTCTTGTTTGTTCAATTGGACTGATTGAGTTGCTATAGACAGGACCTTATGAAATAACTACAAGATGGACCATGGTTATGAAATTCATGCTGCTTCCATGGAAACCAGAATTGGTCTTTACAGGAACATCTGTTATGGGTGTTAACCCAGAAAATGGCAAGTTTTGTAGCCATGTGGTAAGTTCCAACTATTCAGTACTGGTGTTATCTATGGTTTTAAATTTTGGTTGCAGTCGGGTCATGATTTTTTCTATCATAGAAAAATGCAGTCAAATGTTGCTGATGCGACCTTAATTGCAGTAGGGTCAGATTGCAGACATATTAAAAACCTCGATGACTAGTGTTATCAATTGGTGTTTATAAATGAAGTGGTATTATGTCGGTAATTTAACTTCGTATTCCTCAATTTCCTAGGACTTTTGGGATTCACTAAAGAAAAATGACTATTTTTCATTTGAAGGTTTATTGGAAGTATTCAAACAGGTATCATTCTATTTTACTCTTGATGTATGCCTTTGGCATTTTTTTTCTTCTTTTGTAAGTCTTCCAAAATTTGCTGTGAGTTGTTACTATGAAGATTTGACATTTTGCAGTTGAGGATTTACAAGACACCAGATTTGGAATCACCCAAATATCAAATATTAAAACGGACAGCAAATTATGAGGTCAACCTTCTCATTCATGAACATAGTGTTTTTTGTATTGATATAATTAAAATTTATCTTTGTTCTGCTATTCTGTTATGCAATGAAATTTTGCATGAATGCTCATATCAAAAGGTAAACTCTACCTTTGGTGATTGTGCCTTTATGAAAACTGCACCACAAACATATCAAAAGTTAACACAAAAGGATTAAAATCATTCTTTTAGCCACCATTATAAAACTACTTCAAGTCAAAAACAAAAGGATGTATCTTATATGGCTGAGTACGAGATTGAATTTTTAATGAATTCATTGTTTTTTTGATGGTATAACAGGTTAGACAGTATGATCCATTCGTAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGAATACCGGCTTTAATGATGTTGCTGGGTAGGACTTTATACATCAAATAAATCTTTTGTTTATTTAATTTGTCGCTCTCTATTTCAGGTAATGCATACATGTTAAAAATGTTCATTCACAGGTATATATTTGGAAAGAATTCCACAGCAGAGAAGATACCGATGACTACTCCTGTATTCACTCAAGCCATCGATGTTGACTTGTCCAAAGTCTCAATCCAAATAGTTCTTCCATCAGACAAAGAAACAAAGAGGTATGTTTCTGAATTTCGCATGTTTTAAAAATTTGAACAACTTTGTTCCAAGTGATACACGTCTTAGCTTAGGACCTGTTTGTTTTCCATGTTTGTGCCGTGCACCTGCCTATCTCTCTGATTTCCCGCTTCAGACAAATAAAGGGTTAGTTGCCTCGGGATGCAAGAATGAATAGTGTACTATGTTACCAAACATATGCTTAGTAAAGAAAGGAAGTTTTGTGGAAGAATTAGAGCATATCTTTAGTTGAATTAAGATCTGCGCTTACTGTGTAATCTTTTTGACAGTTTACCAAATCCTAATCAAGAAACAGTTAGCTTGAGAAAGGTAGAAGGAGGCATTGCTGCAGTAATAAAGTTTAGTGGAAAACCCATGGAGGATATTGTTCGCGAAAAGGAGAAAATTTTACGCTCCAATATCATTAAAGATGGTCTGAAACCTCAGCCTGGTTGTTTGCTTGCCCGTTACAATGATCCAGGTCGAACATGGTCCTTCATAATGGTATGCTGCGAAACCTTCATGATTGTTGCCATTTGA

Protein sequence

>MS.gene64385.t1

MATFILSHPFPTTCTTFRRPTSAFNIHNYSPLLLQPPRRHRKKNHIKWAINLSLVEQSTQKSSFDLQQLVAFLYDDLPHLFDDKGIDKNAYDERVFFRDPITKHDDLSGYLFNIALLKTIFKPQFQLHWVKPTGPYEITTRWTMVMKFMLLPWKPELVFTGTSVMGVNPENGKFCSHVDFWDSLKKNDYFSFEGLLEVFKQLRIYKTPDLESPKYQILKRTANYEVRQYDPFVVVETNGDKLSGNTGFNDVAGYIFGKNSTAEKIPMTTPVFTQAIDVDLSKVSIQIVLPSDKETKSLPNPNQETVSLRKVEGGIAAVIKFSGKPMEDIVREKEKILRSNIIKDGLKPQPGCLLARYNDPGRTWSFIMVCCETFMIVAI